HHsearch alignment for GI: 254780891 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=5.1e-36 Score=248.70 Aligned_cols=210 Identities=17% Similarity=0.170 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHH----HHHHHHHHCCC
Q ss_conf 15999996768799----999774545422799999999999614430---14789888999999----99863110011
Q gi|254780891|r 3 KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA----IIRLKFMRLAF 71 (215)
Q Consensus 3 ~~~~~~~~~~~laa----llas~IaHdlrtPL~~I~~~~elL~~~~~~---~~~~~~i~~~~~~~----~~l~~~~r~~~ 71 (215)
T Consensus 489 ~~H~kAR~~AE~AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL~d~~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEa 568 (1052)
T TIGR02956 489 LNHAKARAEAEEANRAKSAFLATMSHEIRTPLNGILGTLELLGDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEA 568 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 87999999999974887688741351132011368999975058998888999999998622789999846754677610
Q ss_pred C--CCCCCCCCCCCCHHHHHHHHHHHC---CCCCCCCCC----CCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 2--232000000000134444432201---223321100----0000--1000123444567664687653200111112
Q gi|254780891|r 72 G--YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISV 140 (215)
Q Consensus 72 ~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~--~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~ 140 (215)
T Consensus 569 GGthl~i~~~~fd~~~L~~dv~~Lm~sRA~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgNaIKFT~~G-sv~l~~ 647 (1052)
T TIGR02956 569 GGTHLSISPRPFDLNKLLEDVHHLMESRAQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGNAIKFTDRG-SVVLRV 647 (1052)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHCCCEECCCC-EEEEEE
T ss_conf 8746534556778888999999999987740372567427654278875366134476765441320043452-699998
Q ss_pred CCCCCC------EEEEEEECCCCCCCHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHHHCCCE---EEEEEECCCC
Q ss_conf 355772------047999878984402458874054545-----78998720499999999970987---9999877992
Q gi|254780891|r 141 QDSKNE------NIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIR---LLPEIIDDHN 206 (215)
Q Consensus 141 ~~~~~~------~~i~V~D~G~Gi~~~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~~~gG~---i~v~~~~~~g 206 (215)
T Consensus 648 ~l~~~~~~gdsel~F~V~DtG~GIa-e~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G 726 (1052)
T TIGR02956 648 SLNDDSSSGDSELLFEVEDTGVGIA-EEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG 726 (1052)
T ss_pred EECCCCCCCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 8558889866347888862477998-799985433101210137313776506899999999708887650166645875
Q ss_pred EEEEEEEE
Q ss_conf 69999941
Q gi|254780891|r 207 VVLSALLE 214 (215)
Q Consensus 207 ~~f~~~l~ 214 (215)
T Consensus 727 ScF~F~lp 734 (1052)
T TIGR02956 727 SCFWFTLP 734 (1052)
T ss_pred CEEEEECC
T ss_conf 02212423