HHsearch alignment for GI: 254780891 and conserved domain: cd00082
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.12 E-value=4.7e-06 Score=58.32 Aligned_cols=51 Identities=24% Similarity=0.388 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99977454542279999999999961443----0147898889999999986311
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFM 67 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~----~~~~~~~i~~~~~~~~~l~~~~ 67 (215)
T Consensus 6 ~~~a~iaHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~lv~~~ 60 (65)
T cd00082 6 EFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDL 60 (65)
T ss_pred HHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999872987048888860148988566886999999999999999999999999