HHsearch alignment for GI: 254780891 and conserved domain: smart00387
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.87 E-value=6.2e-22 Score=159.22 Aligned_cols=104 Identities=17% Similarity=0.197 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-----CCCCCHHHHH
Q ss_conf 00012344456766468765320011111235577204799987898440245887405454578-----9987204999
Q gi|254780891|r 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSHDIQFYY 185 (215)
Q Consensus 111 ~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~-----~~g~GlGl~~ 185 (215)
T Consensus 2 d~~~l~~il~Nli~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~-~~~~~~if~~f~~~~~~~~~~~g~GlGL~i 80 (111)
T smart00387 2 DPDRLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIP-PEDLEKIFEPFFRTDGRSRKIGGTGLGLSI 80 (111)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHCCCCCEECCCCCCCCCCCCHHHHH
T ss_conf 8899999999999999996779978999999839999999998899739-899964269947779999887976648999
Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 999999709879999877992699999419
Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 81 ~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~ 110 (111)
T smart00387 81 VKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 999999879989999659981899999981