HHsearch alignment of GI: 254780891 and MMDB domain: 1r62_A_
>1r62_A (A:) Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12}
Probab=99.92 E-value=2.3e-25 Score=180.55 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCC----------CCCCC
Q ss_conf 0000134444432201223321100000---0100012344456766468765-32001111123----------55772
Q gi|254780891|r 81 IGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASL-PRGGKVTISVQ----------DSKNE 146 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~-~~gg~I~i~~~----------~~~~~ 146 (215)
....++...+......+..+........ ..++..+.|++.||+.||++|+ +.++.+.+... ..++.
T Consensus 12 ~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~~l~qvl~NLl~NAik~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (160)
T 1r62_A 12 KVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLA 91 (160)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEECCCCCCCCE
T ss_conf 99999999999875699899998299997799889999999999999999853478953788752033100023356857
Q ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 04799987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 147 NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 147 ~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+.|+|+|+|+||+ ++..+++|+||++++.+|+|||||+|+.+++.|||+|+++|.++ |++|++.||
T Consensus 92 v~i~V~D~G~GI~-~~~~~~iFe~F~ttk~~GtGLGL~i~~~iv~~~~G~i~v~s~~~-Gt~f~i~lP 157 (160)
T 1r62_A 92 ARIDVEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP 157 (160)
T ss_dssp EEEEEEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred EEEEECCCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE
T ss_conf 9999868999879-89999738880436899898419999999998699899999499-789999999