HHsearch alignment of GI: 254780891 and MMDB domain: 1ysr_A_

>1ysr_A (A:) Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis}
Probab=99.92  E-value=8.4e-25  Score=177.03  Aligned_cols=109  Identities=13%  Similarity=-0.051  Sum_probs=97.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC---CCCCCCCH
Q ss_conf             000001000123444567664687653200111112355772047999878984402458874054545---78998720
Q gi|254780891|r  105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHDI  181 (215)
Q Consensus       105 ~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~---~~~~g~Gl  181 (215)
                      ......++..+.|++.||+.||++|++ ++.|.|++..+++.+.|.|+|+|+||+ ++..+++|++|+.   .+..|+||
T Consensus        37 ~~~v~~d~~~l~~il~NLl~NAik~~~-~~~I~i~~~~~~~~i~i~V~D~G~Gi~-~e~~~~iFe~F~r~~~~~~~G~GL  114 (150)
T 1ysr_A           37 TCIIVGLPAGLRLAVDNAIANAVKHGG-ATLVQLSAVSSRAGVEIAIDDNGSGVP-EGERQVVFERFSRGSTASHSGSGL  114 (150)
T ss_dssp             CCEEEECHHHHHHHHHHHHHHHHHTTC-CSEEEEEEEEETTEEEEEEEESSSCCC-GGGHHHHHTSCC-----------C
T ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             967998899999999999999998579-948999998249989999998587879-899998626321589999896077


Q ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             4999999999709879999877992699999419
Q gi|254780891|r  182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       182 Gl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
                      ||++|+.+++.|||+|++++.+++|++|+++||.
T Consensus       115 GL~i~k~i~~~hgG~i~v~s~~~~Gt~f~i~lP~  148 (150)
T 1ysr_A          115 GLALVAQQAQLHGGTASLENSPLGGARLVLRLPG  148 (150)
T ss_dssp             CCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred             HHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf             9999999999859989999669981699999984