HHsearch results for GI: 254780891 and protein with PDBid: 1b3q_A
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
Probab=99.88 E-value=2.6e-22 Score=160.27 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCC
Q ss_conf 745454227999999999996144301478988899999999863110011223200000000013444443220-1223
Q gi|254780891|r 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKR 99 (215)
Q Consensus 21 ~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 99 (215)
+++||+.++.+.+.. .+++. . .+.+.+...++.++.+.++.........+.......+...+..... ..+.
T Consensus 16 n~~gEL~~~~~~l~~---~~~~~-~----~~~l~~~~~~l~~l~~~L~~~~~~~r~~~l~~~~~~~~~~v~~~a~~~~~~ 87 (379)
T 1b3q_A 16 DLMGELVIARSRILE---TLKKY-N----IKELDESLSHLSRITLDLQNVVMKIRMVPISFVFNRFPRMVRDLAKKMNKE 87 (379)
T ss_dssp HHHHHHHHHHHHHHH---TTSSC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHEEETHHHHTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH---HHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 999879998988899---98876-7----999999999999999999998757250119999999999999999971996
Q ss_pred CCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH------------CCCCCCCCCCCCCEEEEEEECCCCCCC---
Q ss_conf 3211000000----100012344456766468765320------------011111235577204799987898440---
Q gi|254780891|r 100 VQVSWTGEKI----DLSRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKINGNLARF--- 160 (215)
Q Consensus 100 ~~~~~~~~~~----~~~~~~~qvl~NLi~NA~~a~~~g------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~--- 160 (215)
+++....+.. .....+.+++.||+.||++|++.+ |.+.+.+...++.+.+.++|+|.|+.+
T Consensus 88 v~l~~~~~~~~~~~~~~~~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~~~ 167 (379)
T 1b3q_A 88 VNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCC
T ss_conf 99997588732560029999999999987777643478628988640355530379997498799999406877664344
Q ss_pred --------------------HHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf --------------------245887405454578-----9987204999999999709879999877992699999419
Q gi|254780891|r 161 --------------------PEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 161 --------------------~e~~~~~~~~~~~~~-----~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
++.++.+|.++++++ .+|+||||++|+.++++|||+|+++|.+|+||+|+++||.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~s~~~~~~~~~G~GLGL~ivk~ive~hgG~I~V~S~~G~GTtF~i~lP~ 247 (379)
T 1b3q_A 168 IRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPL 247 (379)
T ss_dssp HHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEE
T ss_conf 12589840222323455467899776532464434320137999614999999999838879999618988899999964