HHsearch results for GI: 254780891 and protein with PDBid: 1kij_A
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=96.13 E-value=0.015 Score=34.67 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC------CC
Q ss_conf 001234445676646876532--00111112355772047999878984402----------45-8874054------54
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG------NV 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~------~~ 172 (215)
..-+.+++.-+|.||++..-. ...|.|.+..++ .|+|+|+|+||+.+ |. |..+..+ .+
T Consensus 30 ~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg---~isV~ddGrGIPv~~h~~~~~~~~e~i~~~L~tg~nfd~~~~ 106 (390)
T 1kij_A 30 VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAY 106 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSC
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCC---EEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 87221788766685666743699966999996998---599998887266478667797101999989845676578875
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 5789987204999999999709879999877
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~ 203 (215)
....+.+|+|+.++--+ .=.+.|+...
T Consensus 107 k~sgG~nGvGa~l~Nal----S~~f~v~v~~ 133 (390)
T 1kij_A 107 KVSGGLHGVGASVVNAL----SEWTVVEVFR 133 (390)
T ss_dssp CCCSCSSTTSHHHHHHT----EEEEEEEEEE
T ss_pred CCCCCCCCCCCHHHHHC----CHHEEEEEEE
T ss_conf 30267576442765232----5203899980