HHsearch results for GI: 254780891 and protein with PDBid: 1pvg_A
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.09 E-value=0.013 Score=35.19 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CC----
Q ss_conf 0012344456766468765320---0111112355772047999878984402----------45-8874054-54----
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NV---- 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g---g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~---- 172 (215)
..-+.+++.-+|.||++..-.| ..|.|.+..++ -.|+|+|+|.||+.+ |. |..+..+ .+
T Consensus 62 ~~Gl~~l~~EildNavDe~~~g~~~~~I~V~i~~~d--gsisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~ 139 (418)
T 1pvg_A 62 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE--HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT--TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred CCEEEEEEEEEEECHHHHHHCCCCCCEEEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 660024656899980247651688877999996799--889999699014610436678641157887740355445775
Q ss_pred -CCCCCCCCHHHHHHHHHHH
Q ss_conf -5789987204999999999
Q gi|254780891|r 173 -ESTIDSHDIQFYYVILLAH 191 (215)
Q Consensus 173 -~~~~~g~GlGl~~~~~i~~ 191 (215)
....+.||+|..++-.+-+
T Consensus 140 yk~SGGlhGvGasvvNalS~ 159 (418)
T 1pvg_A 140 KKVTGGRNGYGAKLCNIFST 159 (418)
T ss_dssp CCCCSCCSSCHHHHHHHTEE
T ss_pred CEECCCCCCCCHHHHHHHHH
T ss_conf 30407875526402276635