HHsearch results for GI: 254780891 and protein with PDBid: 1r62_A

>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=99.91  E-value=8.9e-25  Score=175.88  Aligned_cols=134  Identities=11%  Similarity=0.031  Sum_probs=103.3

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCCCCC
Q ss_conf             00000013444443220122332110000---00100012344456766468765320011-----------11123557
Q gi|254780891|r   79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKV-----------TISVQDSK  144 (215)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I-----------~i~~~~~~  144 (215)
                      ....+.++.++++.....+.++..+.+..   ...++..+.|++.||+.||++|++.++.+           .+.....+
T Consensus        10 l~evi~~~~~l~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (160)
T 1r62_A           10 IHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYR   89 (160)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCC
T ss_conf             99999999999998755998999983999977998899999999999999998503689616886410230343023568


Q ss_pred             CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf             7204799987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r  145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE  214 (215)
Q Consensus       145 ~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~  214 (215)
                      ..+.|.|+|+|+||+ ++..+++|+||++++..|+||||++|+.|++.|||+|+++|.++ |++|+++||
T Consensus        90 ~~v~i~V~D~G~GI~-~~~~~~iF~pf~t~k~~G~GLGL~i~~~iv~~h~G~i~v~s~~g-Gt~F~i~lP  157 (160)
T 1r62_A           90 LAARIDVEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP  157 (160)
T ss_dssp             EEEEEEEEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred             CEEEEEECCCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE
T ss_conf             468999787889779-89999727872204889986619999999998699899999489-789999998