HHsearch results for GI: 254780891 and protein with PDBid: 1r62_A
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=99.91 E-value=8.9e-25 Score=175.88 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=103.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCCCCC
Q ss_conf 00000013444443220122332110000---00100012344456766468765320011-----------11123557
Q gi|254780891|r 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKV-----------TISVQDSK 144 (215)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I-----------~i~~~~~~ 144 (215)
....+.++.++++.....+.++..+.+.. ...++..+.|++.||+.||++|++.++.+ .+.....+
T Consensus 10 l~evi~~~~~l~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (160)
T 1r62_A 10 IHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYR 89 (160)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCC
T ss_conf 99999999999998755998999983999977998899999999999999998503689616886410230343023568
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 7204799987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 145 ~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
..+.|.|+|+|+||+ ++..+++|+||++++..|+||||++|+.|++.|||+|+++|.++ |++|+++||
T Consensus 90 ~~v~i~V~D~G~GI~-~~~~~~iF~pf~t~k~~G~GLGL~i~~~iv~~h~G~i~v~s~~g-Gt~F~i~lP 157 (160)
T 1r62_A 90 LAARIDVEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP 157 (160)
T ss_dssp EEEEEEEEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred CEEEEEECCCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE
T ss_conf 468999787889779-89999727872204889986619999999998699899999489-789999998