Query gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 191 out of 11591
Neff 9.3
Searched_HMMs 23785
Date Tue May 31 22:07:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780891.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d36_A Sporulation kinase B; G 100.0 1.3E-40 5.6E-45 276.4 14.1 205 9-215 6-224 (244)
2 2c2a_A Sensor histidine kinase 100.0 8E-38 3.4E-42 258.8 19.0 199 16-215 21-247 (258)
3 3a0r_A Sensor protein; four he 100.0 2E-38 8.3E-43 262.6 13.0 204 10-215 125-344 (349)
4 3jz3_A Sensor protein QSEC; he 100.0 5.5E-34 2.3E-38 234.4 9.3 193 18-215 5-216 (222)
5 1gkz_A [3-methyl-2-oxobutanoat 100.0 2.7E-28 1.1E-32 198.2 18.4 198 17-215 123-372 (388)
6 2btz_A Pyruvate dehydrogenase 100.0 9.3E-27 3.9E-31 188.5 19.0 107 108-215 225-349 (394)
7 2e0a_A Pyruvate dehydrogenase 100.0 9.2E-27 3.9E-31 188.5 18.2 107 108-215 224-349 (394)
8 3a0y_A Sensor protein; ATP-LID 99.9 2.7E-26 1.1E-30 185.5 11.2 133 81-215 10-147 (152)
9 1y8o_A [pyruvate dehydrogenase 99.9 5.5E-24 2.3E-28 170.9 20.3 107 108-215 247-373 (419)
10 2q8g_A [pyruvate dehydrogenase 99.9 2.6E-24 1.1E-28 173.0 18.5 107 108-215 237-362 (407)
11 1id0_A PHOQ histidine kinase; 99.9 4.8E-25 2E-29 177.6 11.3 105 108-215 38-144 (152)
12 1ysr_A Sensor-type histidine k 99.9 2.8E-25 1.2E-29 179.1 9.9 105 109-215 41-148 (150)
13 1r62_A Nitrogen regulation pro 99.9 8.9E-25 3.8E-29 175.9 9.6 134 79-214 10-157 (160)
14 1bxd_A ENVZ(290-450), protein 99.9 1.2E-24 4.8E-29 175.2 7.9 103 109-214 42-148 (161)
15 1b3q_A Protein (chemotaxis pro 99.9 2.6E-22 1.1E-26 160.3 12.6 187 21-215 16-247 (379)
16 3ehh_A Sensor kinase (YOCF pro 99.8 3.1E-17 1.3E-21 127.9 16.9 177 20-215 29-215 (218)
17 1ixm_A SPO0B, protein (sporula 99.7 6.8E-19 2.9E-23 138.5 0.7 140 17-173 23-171 (192)
18 2zbk_B Type 2 DNA topoisomeras 99.4 2.4E-12 1E-16 96.9 10.1 101 113-214 30-144 (530)
19 1th8_A Anti-sigma F factor; SP 99.4 2.7E-12 1.1E-16 96.6 9.0 93 114-213 39-136 (145)
20 1mu5_A Type II DNA topoisomera 99.3 9.5E-12 4E-16 93.1 10.4 95 113-208 31-139 (471)
21 3ehg_A Sensor kinase (YOCF pro 99.3 2E-11 8.3E-16 91.1 10.6 86 114-215 40-125 (128)
22 1i58_A Chemotaxis protein CHEA 99.3 2.1E-13 9E-18 103.6 -0.6 93 116-214 90-187 (189)
23 3ke6_A Protein RV1364C/MT1410; 98.3 9E-07 3.8E-11 61.5 6.4 83 115-214 298-384 (399)
24 1joy_A Protein (ENVZ_ecoli); h 98.2 1.5E-06 6.3E-11 60.1 5.3 48 16-65 13-60 (67)
25 2q2e_B Type 2 DNA topoisomeras 97.7 0.0003 1.3E-08 45.5 8.9 90 113-203 36-138 (621)
26 2cg9_A ATP-dependent molecular 97.5 8.8E-05 3.7E-09 48.9 5.0 73 119-192 31-133 (677)
27 3h4l_A DNA mismatch repair pro 97.4 0.00059 2.5E-08 43.6 7.7 82 114-204 25-118 (367)
28 1h7s_A PMS1 protein homolog 2; 97.4 0.00063 2.6E-08 43.5 7.7 80 114-202 34-125 (365)
29 2o1u_A Endoplasmin; GRP94, HSP 97.2 0.00015 6.5E-09 47.3 3.3 73 119-192 50-157 (666)
30 3na3_A DNA mismatch repair pro 97.2 0.00044 1.9E-08 44.4 5.0 59 114-176 28-86 (348)
31 3ied_A Heat shock protein; HSP 97.2 0.00043 1.8E-08 44.5 4.8 80 134-214 117-240 (272)
32 3peh_A Endoplasmin homolog; st 97.1 0.00055 2.3E-08 43.8 5.2 74 118-192 50-154 (281)
33 1b63_A MUTL; DNA mismatch repa 97.1 0.00072 3E-08 43.1 5.6 60 114-177 24-83 (333)
34 1y4s_A Chaperone protein HTPG; 96.9 0.00082 3.5E-08 42.7 4.5 72 119-191 32-135 (559)
35 2ioq_A Chaperone protein HTPG; 96.9 0.00071 3E-08 43.1 4.0 73 118-191 31-135 (624)
36 1ei1_A DNA gyrase B, GYRB; ATP 96.9 0.0055 2.3E-07 37.5 8.4 92 113-212 33-143 (391)
37 2wer_A ATP-dependent molecular 96.9 0.00074 3.1E-08 43.0 3.8 75 118-193 30-134 (220)
38 2ior_A Chaperone protein HTPG; 96.7 0.00059 2.5E-08 43.7 2.2 74 117-191 50-155 (235)
39 1qy5_A Endoplasmin; GRP94, NEC 96.6 0.00034 1.4E-08 45.2 0.6 74 118-192 32-140 (269)
40 3cwv_A DNA gyrase, B subunit, 96.6 0.0095 4E-07 36.0 7.7 83 113-204 29-119 (369)
41 1zxm_A TOPO IIA ATPase, DNA to 96.6 0.013 5.5E-07 35.1 8.4 83 113-201 51-153 (400)
42 2gqp_A Endoplasmin; GRP94, HSP 96.4 0.0011 4.7E-08 41.9 2.4 74 118-192 36-144 (236)
43 3g7e_A DNA gyrase subunit B; i 96.3 0.012 5.2E-07 35.3 7.2 91 113-211 20-129 (203)
44 1yc1_A HSP 86, heat shock prot 96.2 0.0031 1.3E-07 39.1 3.6 75 118-192 72-175 (264)
45 1kij_A DNA gyrase subunit B; t 96.1 0.015 6.4E-07 34.7 6.8 85 112-203 30-133 (390)
46 1pvg_A DNA topoisomerase II; G 96.1 0.013 5.3E-07 35.2 6.2 78 112-191 62-159 (418)
47 1s16_A Topoisomerase IV subuni 95.8 0.028 1.2E-06 33.0 7.1 90 114-211 31-139 (390)
48 3g75_A DNA gyrase subunit B; a 95.2 0.087 3.6E-06 29.9 7.6 86 113-212 19-106 (184)
49 1uyl_A HSP 86, heat shock prot 95.1 0.021 9E-07 33.7 4.4 74 118-192 44-147 (236)
50 3fv5_A DNA topoisomerase 4 sub 95.1 0.053 2.2E-06 31.2 6.4 91 114-212 17-126 (201)
51 3n0r_A Response regulator; sig 89.8 0.032 1.4E-06 32.6 -1.0 13 114-126 33-45 (286)
52 1xn7_A Hypothetical protein YH 41.5 15 0.00061 15.7 2.6 25 18-42 18-42 (78)
53 2k02_A Ferrous iron transport 28.7 25 0.0011 14.2 2.6 26 18-43 18-43 (87)
54 2our_A CAMP and CAMP-inhibited 26.1 17 0.00072 15.3 0.9 20 9-28 103-122 (331)
55 3ibj_A CGMP-dependent 3',5'-cy 22.7 22 0.00092 14.6 0.9 12 119-130 201-212 (691)
56 1zkl_A HCP1, TM22, high-affini 22.6 21 0.0009 14.7 0.8 22 8-29 107-128 (353)
57 3dyn_A High affinity CGMP-spec 22.6 30 0.0013 13.7 1.6 23 7-29 98-120 (329)
58 2r8q_A Class I phosphodiestera 22.5 22 0.00094 14.6 0.9 27 8-34 124-163 (359)
59 3itu_A CGMP-dependent 3',5'-cy 22.3 23 0.00095 14.5 0.9 21 9-29 107-127 (345)
60 1tbf_A CGMP-specific 3',5'-cyc 22.0 23 0.00097 14.5 0.9 22 8-29 125-146 (347)
61 1f0j_A PDE4B, phosphodiesteras 21.9 23 0.00098 14.4 0.9 22 8-29 107-128 (377)
62 3ecm_A High affinity CAMP-spec 21.1 25 0.001 14.3 0.9 22 8-29 99-120 (338)
63 1taz_A Calcium/calmodulin-depe 20.8 25 0.0011 14.2 0.9 28 8-35 106-146 (365)
No 1
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.3e-40 Score=276.40 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=154.0
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHH----HHHCCCCCCCCCC
Q ss_conf 967687999--997745454227999999999996144301----478988899999999863----1100112232000
Q gi|254780891|r 9 LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVD 78 (215)
Q Consensus 9 ~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~~~~----~~~~~i~~~~~~~~~l~~----~~r~~~~~~~~~~ 78 (215)
+++.||+++ |+|+|||||||||++|.+++++|.+..... ++.+.+.+.+.++..+++ +.+.........+
T Consensus 6 ~qaekl~alg~l~a~isHElrtPLt~I~~~~~ll~~~~~~~~~~~~~~~~i~~~~~rl~~li~~ll~~~~~~~~~~~~~~ 85 (244)
T 3d36_A 6 IRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPETPEKLN 85 (244)
T ss_dssp EC---------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 99999999999999999998679999999999997789986999999999999999999999999987276878971664
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 00000013444443220122332110000---001000123444567664687653200111112355772047999878
Q gi|254780891|r 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155 (215)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G 155 (215)
....+.++...+..... ...+.+..+.+ ...++..+.|++.||+.||++|+|.+|.|+|.+..+++++.|.|+|+|
T Consensus 86 l~~~i~~~~~~~~~~~~-~~~i~~~~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~~~~i~i~~~~~~~~v~i~V~D~G 164 (244)
T 3d36_A 86 VKLEIERVIDILRPLAN-MSCVDIQATLAPFSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTG 164 (244)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHH-HCCEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEEECC
T ss_conf 99999999999999975-16859995079846997799999999999999998676897689999960888999999868
Q ss_pred CCCCCHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 984402458874054545789-987204999999999709879999877992699999419
Q gi|254780891|r 156 NLARFPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 156 ~Gi~~~e~~~~~~~~~~~~~~-~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+||+ ++..+++|+||++++. +|+|||||+|+.|++.|||+|+++|.+++|++|+++||.
T Consensus 165 ~GI~-~e~~~~iFepF~~tk~~~GtGLGL~i~k~iv~~hgG~I~v~S~~~~Gt~f~i~lP~ 224 (244)
T 3d36_A 165 VGMT-KEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPL 224 (244)
T ss_dssp SCCC-HHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCC-HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 8989-89999866998658999964768999999999889979999669996699999878
No 2
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=8e-38 Score=258.77 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHH----HHHHHCCCCCCCCCCCCCCCCH
Q ss_conf 99997745454227999999999996144------3014789888999999998----6311001122320000000001
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGD 85 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~------~~~~~~~~i~~~~~~~~~l----~~~~r~~~~~~~~~~~~~~~~~ 85 (215)
.-+.+.|||||||||++|.+++++|.+.. ...++++.|...+.++..+ +++.+...+.........++.+
T Consensus 21 ~~f~a~isHELrtPL~~I~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lL~~sr~e~~~~~l~~~~~~l~~ 100 (258)
T 2c2a_A 21 TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCD 100 (258)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHH
T ss_conf 99999979998589999999999997145569999999999999999999999999999998442799874215876999
Q ss_pred HHH----HHHHHH-HCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCEEEEEEE
Q ss_conf 344----444322-0122332110000----001000123444567664687653200---1111123557720479998
Q gi|254780891|r 86 IEQ----VIEDFI-AVDKRVQVSWTGE----KIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKI 153 (215)
Q Consensus 86 ~~~----~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~~~~~~i~V~D 153 (215)
+.+ .+.... .++..+.++.+.+ ...++..+.|++.||+.||++|++.|| .|.+.+...++.+.|+|+|
T Consensus 101 l~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~D~~~l~qvl~NLl~NAik~t~~g~~~~~i~v~~~~~~~~~~i~V~D 180 (258)
T 2c2a_A 101 LVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVED 180 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEE
T ss_conf 99999999999999769789997089986699987999999999999999985535898248999996059989999998
Q ss_pred CCCCCCCHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 78984402458874054545------789987204999999999709879999877992699999419
Q gi|254780891|r 154 NGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 154 ~G~Gi~~~e~~~~~~~~~~~------~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+|+||+ ++...++|+||+. ++..|+|||||+|+.|++.|||+|+++|.+|+|++|+++||+
T Consensus 181 ~G~GI~-~e~~~~iF~~F~r~~~~~~~~~~G~GLGL~i~k~iv~~hgG~I~v~S~~g~Gt~f~i~lP~ 247 (258)
T 2c2a_A 181 NGIGIP-DHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 247 (258)
T ss_dssp CSSCCC-GGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 289889-8999987459882888888999940489999999999839989999559992699999618
No 3
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transferase, two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=2e-38 Score=262.63 Aligned_cols=204 Identities=15% Similarity=0.105 Sum_probs=152.8
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCC
Q ss_conf 67687999--997745454227999999999996144----301478988899999999863110-01122320000000
Q gi|254780891|r 10 SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMR-LAFGYTGSVDSLIG 82 (215)
Q Consensus 10 ~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~~----~~~~~~~~i~~~~~~~~~l~~~~r-~~~~~~~~~~~~~~ 82 (215)
+..+++++ +++.+||||||||++|.+++++|.... ...++.+.|.+.++++..+++.+. .............+
T Consensus 125 ~~e~~~~l~~~~~~iaHelrnPL~~I~~~~~~l~~~~~~~~~~~~~l~~i~~~~~rl~~li~~ll~~~~~~~~~~~~~~~ 204 (349)
T 3a0r_A 125 RRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKERQVLEFTEFN 204 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 99999999999997655502426799999999971479979999999999999999999998899873443335667657
Q ss_pred CCH----HHHHHHHHHH-CCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 001----3444443220-122332110000---00100012344456766468765320011111235577204799987
Q gi|254780891|r 83 LGD----IEQVIEDFIA-VDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154 (215)
Q Consensus 83 ~~~----~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~ 154 (215)
+.+ +...++.... ++..+.++.+.+ ...++..+.|++.||+.||++|++.+|+|+|++...++.+.|.|+|+
T Consensus 205 l~~~i~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~d~~~l~qvl~NLl~NAi~~~~~~g~I~v~~~~~~~~v~i~V~D~ 284 (349)
T 3a0r_A 205 LNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNS 284 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCCEEEESCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEEC
T ss_conf 99999999999999998669189997278870899857899999999999999976799669999995354899999978
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 8984402458874054545789987204999999999-709879999877992699999419
Q gi|254780891|r 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 155 G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~-~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+||+ |+..+++|+||++++.+|+|||||+|+.|++ .|||.|++++. ++||+|+++||+
T Consensus 285 G~Gi~-~~~~~~iFepF~ttk~~GtGLGL~i~k~iv~~~hgG~i~~~s~-~~Gt~F~i~lP~ 344 (349)
T 3a0r_A 285 GPPIP-EELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPK 344 (349)
T ss_dssp SCCCC-GGGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEEC-SSEEEEEEEEES
T ss_pred CCCCC-HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECC
T ss_conf 99989-8999872699631898973557999999999848998999977-997799999359
No 4
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.5e-34 Score=234.40 Aligned_cols=193 Identities=16% Similarity=0.129 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH-
Q ss_conf 997745454227999999999996144301----47898----889999999986311001122320000000001344-
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQL----IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ- 88 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~~~~~----~~~~~----i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~- 88 (215)
+.+.|||||||||++|.++++++......+ +++.. +.+..+.+++++++.+...+............++..
T Consensus 5 F~a~iSHELrTPLt~I~~~~ell~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lL~~sr~~~~~~~~~~~~~~l~~~~~~ 84 (222)
T 3jz3_A 5 FTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQS 84 (222)
T ss_dssp -----------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHH
T ss_conf 99999999828999999999998547999899999999999999999999999999987630556465444428999999
Q ss_pred HHHHHH----HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCH
Q ss_conf 444322----0122332110000---001000123444567664687653200111112355772047999878984402
Q gi|254780891|r 89 VIEDFI----AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161 (215)
Q Consensus 89 ~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~ 161 (215)
.+..+. .....+.+..+.+ ...++..+.|++.||+.||++|+|.++.|.|++... .+.|+|+|+||+ +
T Consensus 85 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~~l~~vl~NLl~NAikys~~~~~I~i~~~~~----~~~v~D~G~GI~-~ 159 (222)
T 3jz3_A 85 SVMDIYHTAQQAKIDVRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNAD----NFIVRDNGPGVT-P 159 (222)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEECSS----EEEEECSCC-----
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE----EEEECCCCCCCC-H
T ss_conf 99999999997495799970776646832699999999999999998689996799999742----499835899989-9
Q ss_pred HHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 458874054545---789987204999999999709879999877992699999419
Q gi|254780891|r 162 EKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 162 e~~~~~~~~~~~---~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+...++|+||+. ++.+|+|||||+|+.|++.|||+|+++|.+++|++|+++.++
T Consensus 160 e~~~~iFe~F~r~~~~~~~G~GLGL~Ivk~iv~~hgG~I~v~s~~~~Gt~f~i~F~E 216 (222)
T 3jz3_A 160 EALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLE 216 (222)
T ss_dssp ----------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 999986179741899999952678999999999839989999779898799999773
No 5
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.96 E-value=2.7e-28 Score=198.20 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHH----HHHHHHCCCCCCCCCCCCCCCCHHH-
Q ss_conf 99977454542279999999999961443014----78988899999999----8631100112232000000000134-
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIE- 87 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~----~~~~i~~~~~~~~~----l~~~~r~~~~~~~~~~~~~~~~~~~- 87 (215)
-+.+.+.|+.+||++.|...++.+.+....++ .++.+..+...+.. ++.+.+...+..+.........++.
T Consensus 123 ~~l~~il~~~~~~l~~la~gl~e~~~~~~~~~~~~~~Ld~~~~s~~~~~~li~~~L~l~~~~~~~vg~i~~~~~l~~vi~ 202 (388)
T 1gkz_A 123 QLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIE 202 (388)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEECHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999987016499999999999985178669999999999997878999999999850247886553278899999999
Q ss_pred ---HHHHHHHH----CCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--------CCCCCCCCCCCCEEEE
Q ss_conf ---44443220----12233211--0000001000123444567664687653200--------1111123557720479
Q gi|254780891|r 88 ---QVIEDFIA----VDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFS 150 (215)
Q Consensus 88 ---~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~qvl~NLi~NA~~a~~~gg--------~I~i~~~~~~~~~~i~ 150 (215)
+.+...+. ....+.+. .+.....+|..+.|++.||+.||++|++.++ .|.|++...++.+.|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~dp~~L~~il~NLL~NAikat~e~~~~~~~~~p~I~v~i~~~~~~v~I~ 282 (388)
T 1gkz_A 203 KWVDFARRLCEHKYGNAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIR 282 (388)
T ss_dssp HHHHHHHHHHHHHHSCCCCEEEEESTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEE
T ss_conf 99999999999853887403434788736147889999999999999999977167555777884799997158869999
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 99878984402458874054545789--------------------------9872049999999997098799998779
Q gi|254780891|r 151 LKINGNLARFPEKFTQIVDGNVESTI--------------------------DSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 151 V~D~G~Gi~~~e~~~~~~~~~~~~~~--------------------------~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
|+|+|+||+ ++..+++|+++++++. .|+|+||++||.+|+.|||.|++.|.+|
T Consensus 283 I~D~G~GIp-~e~l~~IF~~fyTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~isr~~ae~~GG~I~v~S~~G 361 (388)
T 1gkz_A 283 ISDRGGGIA-HKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp EECCSCCCC-TTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred EEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 986999879-9999876275524676555554333321211113556678988870449999999998699789995479
Q ss_pred CCEEEEEEEEC
Q ss_conf 92699999419
Q gi|254780891|r 205 HNVVLSALLEK 215 (215)
Q Consensus 205 ~g~~f~~~l~~ 215 (215)
.||+|++.|||
T Consensus 362 ~GT~~~l~L~~ 372 (388)
T 1gkz_A 362 IGTDVYLRLRH 372 (388)
T ss_dssp TEEEEEEEEEC
T ss_pred CCEEEEEEECC
T ss_conf 64699999789
No 6
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.95 E-value=9.3e-27 Score=188.47 Aligned_cols=107 Identities=10% Similarity=0.034 Sum_probs=96.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC---
Q ss_conf 0010001234445676646876532001-------111123557720479998789844024588740545457899---
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--- 177 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~--- 177 (215)
...++..+.|++.||+.||++|++.++. |.|.+...++.+.|.|+|+|+||+ ++..+++|++|++++..
T Consensus 225 ~~~dp~~L~qIl~NLl~NAikat~e~~~~~~~~~~I~V~i~~~~~~v~I~V~D~G~GI~-~e~l~~IF~~fytt~~~~~~ 303 (394)
T 2btz_A 225 MVYVPSHLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVP-LRKIERLFSYMYSTAPTPQP 303 (394)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHHHHTCTTTTCCC----
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCC
T ss_conf 98679999999999999999987620356888870799998579789999988999989-89999873876216787777
Q ss_pred --------CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf --------87204999999999709879999877992699999419
Q gi|254780891|r 178 --------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 178 --------g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+||||+|||.+|+.|||.|+++|.+|.||+|++.|||
T Consensus 304 ~~~~~~~~G~GLGL~isk~~~~~hgG~I~v~S~~G~GT~f~i~Lp~ 349 (394)
T 2btz_A 304 GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA 349 (394)
T ss_dssp ----------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 7788888981501999999999869989999608961699999708
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.95 E-value=9.2e-27 Score=188.51 Aligned_cols=107 Identities=11% Similarity=0.024 Sum_probs=96.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH-------HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC---
Q ss_conf 00100012344456766468765-------32001111123557720479998789844024588740545457899---
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--- 177 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~-------~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~--- 177 (215)
...+|.++.|+|.||+.||++|+ +..+.|+|.+...++.+.|+|+|+|+||+ ++...++|+++++++..
T Consensus 224 ~~~dp~~L~~il~NLl~NAikat~e~~~~~~~~~~I~v~v~~~~~~v~I~VsD~G~GI~-~e~l~~IF~~fytt~~~~~~ 302 (394)
T 2e0a_A 224 IVYVPSHLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVP-LRIIDRLFSYTYSTAPTPVM 302 (394)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCC-GGGHHHHTSTTCCSSCCC--
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCC
T ss_conf 99889999999999999999999863877898872899996279979999996699989-89998761655207875656
Q ss_pred ---------CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ---------87204999999999709879999877992699999419
Q gi|254780891|r 178 ---------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 178 ---------g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+|+||++|+.+++.|||+|+++|.+|.||+|++.|||
T Consensus 303 ~~s~~~~~~GtGlGL~isr~i~~~hgG~I~v~S~~G~GT~f~l~Lp~ 349 (394)
T 2e0a_A 303 DNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKA 349 (394)
T ss_dssp ----CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 65556898961376999999999879979999427984599999848
No 8
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.94 E-value=2.7e-26 Score=185.51 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHH-CCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 000013444443220-122332110000---0010001234445676646876532001111123557720479998789
Q gi|254780891|r 81 IGLGDIEQVIEDFIA-VDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156 (215)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~ 156 (215)
..+.++...+..... ....+.++.+.. ...++..+.|++.||+.||++|++.+|+|.|++...++.+.|+|+|+|+
T Consensus 10 ~~i~~~~~~~~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~~~~~~~~I~i~~~~~~~~v~i~V~D~G~ 89 (152)
T 3a0y_A 10 ELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGP 89 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEECCCC
T ss_conf 99999999999999878989999808988799987999999999999999998149977999999659889999970899
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 84402458874054545789987204999999999-709879999877992699999419
Q gi|254780891|r 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 157 Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~-~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
||+ ++...++|+||++++.+|+|||||+|+.+++ .|||.+++++. ++|++|++.||+
T Consensus 90 Gi~-~e~~~~iFe~F~t~k~~GtGLGL~i~k~iv~~~hgg~i~~~~~-~~Gt~f~i~lP~ 147 (152)
T 3a0y_A 90 PIP-EELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENR-ENGVVFIFEIPK 147 (152)
T ss_dssp CCC-GGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTTSCEEEEEEE-TTEEEEEEEEES
T ss_pred CCC-HHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEEECC
T ss_conf 989-9999871699518898950679999999999958999999966-994799999529
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.93 E-value=5.5e-24 Score=170.89 Aligned_cols=107 Identities=11% Similarity=-0.015 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC--------CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC---
Q ss_conf 001000123444567664687653200--------111112355772047999878984402458874054545789---
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--- 176 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg--------~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--- 176 (215)
...++..+.|+|.||+.||++|++.++ .|.|.+...++.+.|+|+|+|+||+ ++..+++|++++++..
T Consensus 247 ~~~dp~~L~qIL~NLL~NAikat~e~~~~~~~~~P~I~V~i~~~~~~v~I~IsD~G~GI~-~e~~~~IF~~fytt~~~~~ 325 (419)
T 1y8o_A 247 VVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVP-LRKIDRLFNYMYSTAPRPS 325 (419)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHGGGGCTTTC------
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCC
T ss_conf 996799999999999998999888652346788870799998569689999987999989-8999877075762688776
Q ss_pred ---------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf ---------987204999999999709879999877992699999419
Q gi|254780891|r 177 ---------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 177 ---------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.|+|+||++||.+|+.|||+|+++|.+|.||.|++.|||
T Consensus 326 ~~~~~~~~~~G~GlGL~isk~~ae~~gG~i~v~S~~G~GT~~~l~L~~ 373 (419)
T 1y8o_A 326 LEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKA 373 (419)
T ss_dssp -------CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 555566898964141999999999869989999647963699999728
No 10
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.93 E-value=2.6e-24 Score=172.98 Aligned_cols=107 Identities=8% Similarity=0.015 Sum_probs=95.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC----
Q ss_conf 00100012344456766468765320-------0111112355772047999878984402458874054545789----
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~g-------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~---- 176 (215)
...+|..+.+++.||+.||++|+..+ +.|.|.+...++.+.|+|+|+|+||+ ++...++|++++++..
T Consensus 237 ~~~~p~~L~~il~nLLkNA~ratve~~~~~~~~p~I~V~i~~~~~~v~I~IsD~G~GI~-~e~l~~IF~~fytT~~~~~~ 315 (407)
T 2q8g_A 237 VVYVPSHLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVP-LRKIDRLFNYMYSTAPRPRV 315 (407)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHGGGGCTTTTCCCCCCS
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHHCCCCCCCCCCCC
T ss_conf 99539999999999999999998833766899873899998478479999998998979-89998771554327786665
Q ss_pred --------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf --------987204999999999709879999877992699999419
Q gi|254780891|r 177 --------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 177 --------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
.|+|+||++||.+|+.|||.|+++|.+|.||+|++.|||
T Consensus 316 d~~~~~~~~G~GlGL~isr~~ae~~gG~I~v~S~~G~GTd~~l~Lp~ 362 (407)
T 2q8g_A 316 ETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKA 362 (407)
T ss_dssp SCCSCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
T ss_conf 55566898971154999999999879979999647962599999708
No 11
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.92 E-value=4.8e-25 Score=177.60 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC--CCCCCCHHHHH
Q ss_conf 0010001234445676646876532001111123557720479998789844024588740545457--89987204999
Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES--TIDSHDIQFYY 185 (215)
Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~--~~~g~GlGl~~ 185 (215)
...++..+.|++.||+.||++|++.+ |+|++...++.+.|+|+|+|+||+ ++..+++|++|+.. ...|+|||||+
T Consensus 38 ~~~d~~~l~~vl~NLl~NAiky~~~~--i~I~~~~~~~~~~i~V~D~G~Gi~-~~~~~~iF~~F~r~~~~~~G~GLGL~i 114 (152)
T 1id0_A 38 FVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQTDEHLYIVVEDDGPGIP-LSKREVIFDRGQRVDTLRPGQGVGLAV 114 (152)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHCSSE--EEEEEEECSSCEEEEEEESSSCCC-GGGTTGGGSCCCCTTCCCTTCCSCHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCC--EEEEEEEECCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 99889999999999999999977998--899999979999999998899989-899998728970489998971479999
Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 999999709879999877992699999419
Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+.+++.|||+|++++.+++|++|+++|||
T Consensus 115 ~k~iv~~h~G~I~~~s~~~~G~~f~i~lP~ 144 (152)
T 1id0_A 115 AREITEQYEGKIVAGESMLGGARMEVIFGR 144 (152)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEECC
T ss_conf 999999859989999759985799999879
No 12
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.92 E-value=2.8e-25 Score=179.06 Aligned_cols=105 Identities=12% Similarity=-0.043 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC---CCCCCCCHHHHH
Q ss_conf 01000123444567664687653200111112355772047999878984402458874054545---789987204999
Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHDIQFYY 185 (215)
Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~---~~~~g~GlGl~~ 185 (215)
..++..+.|++.||+.||++|++. +.|+|++...++.+.|.|+|+|+||+ ++...++|++|+. .+..|+|||||+
T Consensus 41 ~~d~~~l~~vl~NLl~NAiky~~~-~~I~i~~~~~~~~v~i~V~D~G~GI~-~~~~~~iF~~F~r~~~~~~~G~GLGL~i 118 (150)
T 1ysr_A 41 VGLPAGLRLAVDNAIANAVKHGGA-TLVQLSAVSSRAGVEIAIDDNGSGVP-EGERQVVFERFSRGSTASHSGSGLGLAL 118 (150)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEEETTEEEEEEEESSSCCC-GGGHHHHHTSCC-----------CCCHH
T ss_pred EECHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEECCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 989999999999999999974899-78999999809999999998487979-8999985576341799998960779999
Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 999999709879999877992699999419
Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
|+.+++.|||+|+++|.+++|++|++.||.
T Consensus 119 ~k~i~~~hgG~i~v~s~~~~Gt~f~i~lP~ 148 (150)
T 1ysr_A 119 VAQQAQLHGGTASLENSPLGGARLVLRLPG 148 (150)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 999999859989999669981699999984
No 13
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transferase; 1.60A {Escherichia coli K12} SCOP: d.122.1.3
Probab=99.91 E-value=8.9e-25 Score=175.88 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=103.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCCCCC
Q ss_conf 00000013444443220122332110000---00100012344456766468765320011-----------11123557
Q gi|254780891|r 79 SLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKV-----------TISVQDSK 144 (215)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~I-----------~i~~~~~~ 144 (215)
....+.++.++++.....+.++..+.+.. ...++..+.|++.||+.||++|++.++.+ .+.....+
T Consensus 10 l~evi~~~~~l~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (160)
T 1r62_A 10 IHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYR 89 (160)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEECCCCC
T ss_conf 99999999999998755998999983999977998899999999999999998503689616886410230343023568
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 7204799987898440245887405454578998720499999999970987999987799269999941
Q gi|254780891|r 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 145 ~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
..+.|.|+|+|+||+ ++..+++|+||++++..|+||||++|+.|++.|||+|+++|.++ |++|+++||
T Consensus 90 ~~v~i~V~D~G~GI~-~~~~~~iF~pf~t~k~~G~GLGL~i~~~iv~~h~G~i~v~s~~g-Gt~F~i~lP 157 (160)
T 1r62_A 90 LAARIDVEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP 157 (160)
T ss_dssp EEEEEEEEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE
T ss_pred CEEEEEECCCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE
T ss_conf 468999787889779-89999727872204889986619999999998699899999489-789999998
No 14
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.91 E-value=1.2e-24 Score=175.18 Aligned_cols=103 Identities=16% Similarity=0.129 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC----CCCCCCHHHH
Q ss_conf 010001234445676646876532001111123557720479998789844024588740545457----8998720499
Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES----TIDSHDIQFY 184 (215)
Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~----~~~g~GlGl~ 184 (215)
..++..+.|++.||+.||++|+ ++.|+|++..+++.+.|.|+|+|+||+ ++..+++|+||+.. ..+|+|||||
T Consensus 42 ~~d~~~l~~vl~NLi~NAik~~--~~~I~i~~~~~~~~~~i~V~D~G~GI~-~e~~~~iF~~F~r~~~~~~~~G~GLGL~ 118 (161)
T 1bxd_A 42 KMHPLSIKRAVANMVVNAARYG--NGWIKVSSGTEPNRAWFQVEDDGPGIA-PEQRKHLFQPFVRGDSARTISGTGLGLA 118 (161)
T ss_dssp EECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEEETTEEEEEEEEESSCSC-TTGGGCSSCCCCCCSCCCCCCCCSCCCC
T ss_pred EECHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECCEEEEEEEECCCCCC-HHHHHHHHCCCEECCCCCCCCCCCHHHH
T ss_conf 9889999999999999999747--985999999966989999998675559-9999886588358878886888660799
Q ss_pred HHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 999999970987999987799269999941
Q gi|254780891|r 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 185 ~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+|+.|++.|||+|+++|.+++|++|++.||
T Consensus 119 i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lP 148 (161)
T 1bxd_A 119 IVQRIVDNHNGMLELGTSERGGLSIRAWLP 148 (161)
T ss_dssp TTHHHHHHHTSEEEEEEETTTEEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEEE
T ss_conf 999999987998999973999189999998
No 15
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi- domains protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A*
Probab=99.88 E-value=2.6e-22 Score=160.27 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCCC
Q ss_conf 745454227999999999996144301478988899999999863110011223200000000013444443220-1223
Q gi|254780891|r 21 RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKR 99 (215)
Q Consensus 21 ~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 99 (215)
+++||+.++.+.+.. .+++. . .+.+.+...++.++.+.++.........+.......+...+..... ..+.
T Consensus 16 n~~gEL~~~~~~l~~---~~~~~-~----~~~l~~~~~~l~~l~~~L~~~~~~~r~~~l~~~~~~~~~~v~~~a~~~~~~ 87 (379)
T 1b3q_A 16 DLMGELVIARSRILE---TLKKY-N----IKELDESLSHLSRITLDLQNVVMKIRMVPISFVFNRFPRMVRDLAKKMNKE 87 (379)
T ss_dssp HHHHHHHHHHHHHHH---TTSSC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHEEETHHHHTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHH---HHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 999879998988899---98876-7----999999999999999999998757250119999999999999999971996
Q ss_pred CCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH------------CCCCCCCCCCCCCEEEEEEECCCCCCC---
Q ss_conf 3211000000----100012344456766468765320------------011111235577204799987898440---
Q gi|254780891|r 100 VQVSWTGEKI----DLSRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKINGNLARF--- 160 (215)
Q Consensus 100 ~~~~~~~~~~----~~~~~~~qvl~NLi~NA~~a~~~g------------g~I~i~~~~~~~~~~i~V~D~G~Gi~~--- 160 (215)
+++....+.. .....+.+++.||+.||++|++.+ |.+.+.+...++.+.+.++|+|.|+.+
T Consensus 88 v~l~~~~~~~~~~~~~~~~l~~~l~~Ll~Na~~~~~e~~~~r~~~~~~~~~~i~~~~~~~~~~i~i~~~d~g~g~~~~~~ 167 (379)
T 1b3q_A 88 VNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKI 167 (379)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHH
T ss_pred EEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCCCCCCCCC
T ss_conf 99997588732560029999999999987777643478628988640355530379997498799999406877664344
Q ss_pred --------------------HHHHHHHHCCCCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf --------------------245887405454578-----9987204999999999709879999877992699999419
Q gi|254780891|r 161 --------------------PEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 161 --------------------~e~~~~~~~~~~~~~-----~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
++.++.+|.++++++ .+|+||||++|+.++++|||+|+++|.+|+||+|+++||.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~s~~~~~~~~~G~GLGL~ivk~ive~hgG~I~V~S~~G~GTtF~i~lP~ 247 (379)
T 1b3q_A 168 IRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPL 247 (379)
T ss_dssp HHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEEE
T ss_conf 12589840222323455467899776532464434320137999614999999999838879999618988899999964
No 16
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.77 E-value=3.1e-17 Score=127.95 Aligned_cols=177 Identities=10% Similarity=-0.019 Sum_probs=109.6
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 774545----4227999999999996144--3014789888999999998631100112232000000000134444432
Q gi|254780891|r 20 SRICHD----IISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93 (215)
Q Consensus 20 s~IaHd----lrtPL~~I~~~~elL~~~~--~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
.+|||| +.++|++|...++++.... ........+......+.......+.................. ....
T Consensus 29 ~ria~~lHd~v~~~Lt~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 105 (218)
T 3ehh_A 29 QRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSMKGIRLKDELINI---KQIL 105 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHH---HHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHH
T ss_conf 9999984533545999999999999975305879999999999999999999999877530232057789999---9999
Q ss_pred HHCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC
Q ss_conf 201223321100000----0100012344456766468765320011111235577204799987898440245887405
Q gi|254780891|r 94 IAVDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169 (215)
Q Consensus 94 ~~~~~~~~~~~~~~~----~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~ 169 (215)
........+...... ......+.+++.|++.||++|.+. ..|.+.+...++.+.+.|+|+|+|++ ++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~il~ell~Na~kh~~~-~~v~i~~~~~~~~~~i~v~Dng~g~~-~~------- 176 (218)
T 3ehh_A 106 EAADIMFIYEEEKWPENISLLNENILSMCLKEAVTNVVKHSQA-KTCRVDIQQLWKEVVITVSDDGTFKG-EE------- 176 (218)
T ss_dssp HHTTCEEECCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC-SEEEEEEEEETTEEEEEEEESSCCCC----------
T ss_pred HHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCCEEEEECCCCCCCCC-CC-------
T ss_conf 8638848998357764457047999999999999711211455-05898741432034322147987667-77-------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 4545789987204999999999709879999877992699999419
Q gi|254780891|r 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 170 ~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
+..|+|+||++++.+++.|||++++++. .|++|+++||+
T Consensus 177 -----~~~~~GlGL~~v~~~i~~~gG~i~~~s~--~Gt~~~i~lP~ 215 (218)
T 3ehh_A 177 -----NSFSKGHGLLGMRERLEFANGSLHIDTE--NGTKLTMAIPN 215 (218)
T ss_dssp -----------CHHHHHHHHHHHTTCEEEEECS--SSEEEEEEEEC
T ss_pred -----CCCCCCCHHHHHHHHHHHCCCEEEEECC--CCEEEEEEECC
T ss_conf -----8999982199999999988988999869--98799999719
No 17
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=99.71 E-value=6.8e-19 Score=138.52 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 9997745454227999999999996144301478988899999999863110011223200000000013444443----
Q gi|254780891|r 17 LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---- 92 (215)
Q Consensus 17 llas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---- 92 (215)
.+.+.++|||||||++|.++++++......+.....+... .+...+. ... ...+......
T Consensus 23 ~~l~~~~HdlrnpLt~I~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~---~~~------------~~~~~~~~~~~~~~ 86 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDA-KHESKLS---NLK------------TPHLAFDFLTFNWK 86 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHH---TTT------------CHHHHHHHHHGGGS
T ss_pred HHHHHCCHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHH------------HHHHHHHHHHHHHH
T ss_conf 9998566332475778754102421001111011233322-3567776---323------------56778777778999
Q ss_pred HHHCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 22012233211000----00010001234445676646876532-00111112355772047999878984402458874
Q gi|254780891|r 93 FIAVDKRVQVSWTG----EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 (215)
Q Consensus 93 ~~~~~~~~~~~~~~----~~~~~~~~~~qvl~NLi~NA~~a~~~-gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~ 167 (215)
.........+.... .....+.++.+++.|++.||++|.+. ++.|+|.+..+++.+.|+|+|+|+||+ |+.+.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~il~nli~NAi~~~~~~~~~I~i~~~~~~~~~~i~i~D~G~gi~-~~~l~~i 165 (192)
T 1ixm_A 87 THYMTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFAD-PSAFDDI 165 (192)
T ss_dssp CCSSEEEEEEESSCCCCTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSC-GGGCC--
T ss_pred HHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHH
T ss_conf 886333432124776300121139999999999999988742789866999999679999999997688568-8999998
Q ss_pred HCCCCC
Q ss_conf 054545
Q gi|254780891|r 168 VDGNVE 173 (215)
Q Consensus 168 ~~~~~~ 173 (215)
|.+++.
T Consensus 166 ~~~~~~ 171 (192)
T 1ixm_A 166 RQNGYE 171 (192)
T ss_dssp ------
T ss_pred HHCCCC
T ss_conf 761137
No 18
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.39 E-value=2.4e-12 Score=96.92 Aligned_cols=101 Identities=10% Similarity=0.038 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCCCC---CCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-------CCCC
Q ss_conf 0123444567664687653200---11111235---577204799987898440245887405454578-------9987
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRGG---KVTISVQD---SKNENIFSLKINGNLARFPEKFTQIVDGNVEST-------IDSH 179 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~---~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~-------~~g~ 179 (215)
..+.+++.+|+.||++|...++ .|.|.+.. ..+...|.|+|+|.||+ ++.+..+|..+.+.+ .+++
T Consensus 30 ~~l~~~vkELi~Na~DA~a~~~~~~~i~v~I~~~~~~~~~~~i~V~DnGiGms-~e~l~~~f~~f~~s~~~~~~~~~G~~ 108 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQTRGMY 108 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCC-GGGSHHHHTSCCCSCCCCCSCCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 56999999999999988872589883599999834899578999996289899-99999986420347764532447865
Q ss_pred CHHHHHHHHHHHHC-CCEEEEEEECCCCEEEEEEEE
Q ss_conf 20499999999970-987999987799269999941
Q gi|254780891|r 180 DIQFYYVILLAHEN-KIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 180 GlGl~~~~~i~~~~-gG~i~v~~~~~~g~~f~~~l~ 214 (215)
|+||.+++.++..+ |+.++|.+..++|++|+..++
T Consensus 109 GlGl~~~~~~s~~~~g~~v~v~S~~~~~s~~~~~~~ 144 (530)
T 2zbk_B 109 GLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKL 144 (530)
T ss_dssp SSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEE
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEC
T ss_conf 445899999999805975999994589964899833
No 19
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.36 E-value=2.7e-12 Score=96.58 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--CCCCCHHHHHHHH
Q ss_conf 123444567664687653---20011111235577204799987898440245887405454578--9987204999999
Q gi|254780891|r 114 ERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVIL 188 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~---~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--~~g~GlGl~~~~~ 188 (215)
++..++.+++.||++|.- +++.|.|++..+++.+.|.|+|+|+||+ + ..+.|.|++++. ..++|+||++++.
T Consensus 39 di~lav~E~~~NaI~Ha~~~~~~~~I~i~~~~~~~~l~i~V~D~G~Gi~-~--~~~~~~~~~~~~~~~~~~GlGL~ii~~ 115 (145)
T 1th8_A 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D--IEEARQPLFTTKPELERSGMGFTIMEN 115 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C--HHHHTCCC-------CCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCC-C--HHHCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999999999999884348999908999999937899999996478958-5--775378775446799957368999999
Q ss_pred HHHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 9997098799998779926999994
Q gi|254780891|r 189 LAHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 189 i~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
+ .+++.+++.+++|++|+++-
T Consensus 116 l----~d~i~i~s~~~~Gt~v~l~K 136 (145)
T 1th8_A 116 F----MDEVIVESEVNKGTTVYLKK 136 (145)
T ss_dssp H----SSEEEEEEETTTEEEEEEEE
T ss_pred H----CCEEEEEECCCCCEEEEEEE
T ss_conf 6----99999998399969999998
No 20
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.33 E-value=9.5e-12 Score=93.12 Aligned_cols=95 Identities=9% Similarity=0.056 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCCCC---CCCCEEEEEEECCCCCCCHHHHHHHHCCCCC------CCCCCC-
Q ss_conf 0123444567664687653200---11111235---5772047999878984402458874054545------789987-
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRGG---KVTISVQD---SKNENIFSLKINGNLARFPEKFTQIVDGNVE------STIDSH- 179 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~---~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~------~~~~g~- 179 (215)
..+.+++.||+.||++|++.+| .|.|.+.. .++.+.|.|+|+|+||+ ++.+.++|..++. ....|.
T Consensus 31 ~~l~~~v~ElV~NAiDa~~~~g~~p~I~I~I~~~~~~~~~~~I~V~DNG~GI~-~e~i~~iF~r~~~~sk~~~~~~~G~~ 109 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQTRGMY 109 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCC-GGGHHHHHHCCCCC-CCCCSCCSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 16999999999999997885599871699999736888689999996289999-99999986502625676650368962
Q ss_pred CHHHHHHHHHHHHCCCE-EEEEEECCCCEE
Q ss_conf 20499999999970987-999987799269
Q gi|254780891|r 180 DIQFYYVILLAHENKIR-LLPEIIDDHNVV 208 (215)
Q Consensus 180 GlGl~~~~~i~~~~gG~-i~v~~~~~~g~~ 208 (215)
||||+.+..+++.|+|. +.|.|..+++.+
T Consensus 110 GlGl~~~~~~s~~~~G~~i~V~S~~~~~~~ 139 (471)
T 1mu5_A 110 GLGVKAAVLYSQMHQDKPIEIETSPVNSKR 139 (471)
T ss_dssp TTTHHHHHHHHHHHCCCCEEEEEECTTCSE
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEECCCCCE
T ss_conf 134899999999737946999994489973
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.30 E-value=2e-11 Score=91.11 Aligned_cols=86 Identities=9% Similarity=-0.002 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 12344456766468765320011111235577204799987898440245887405454578998720499999999970
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~ 193 (215)
.+.+++.+++.||++|.. ++.|+|++..+++.+.+.|+|+|+|++ ++ ...+.|+||...+.-++.+
T Consensus 40 ~l~~ii~E~ltNa~kHa~-a~~v~v~l~~~~~~~~l~V~DnG~g~~-~~------------~~~~~G~GL~~~~~Rv~~~ 105 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQ-AKTCRVDIQQLWKEVVITVSDDGTFKG-EE------------NSFSKGHGLLGMRERLEFA 105 (128)
T ss_dssp HHHHHHHHHHHHHHHHTC-CSEEEEEEEEETTEEEEEEEESSCCCS-CS------------SCCCTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEEEEEEECCEEEEEEEECCCCCC-CC------------CCCCCCCCHHHHHHHHHHC
T ss_conf 999999999999998479-967999999879999999997994543-45------------5789986699999999987
Q ss_pred CCEEEEEEECCCCEEEEEEEEC
Q ss_conf 9879999877992699999419
Q gi|254780891|r 194 KIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 194 gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
||++.+++ +.|++|++.||.
T Consensus 106 gG~l~i~s--~~Gt~v~i~iPl 125 (128)
T 3ehg_A 106 NGSLHIDT--ENGTKLTMAIPN 125 (128)
T ss_dssp TCEEEEEC--SSSEEEEEEEEC
T ss_pred CCEEEEEC--CCCEEEEEEEEC
T ss_conf 99999987--999899999979
No 22
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.28 E-value=2.1e-13 Score=103.59 Aligned_cols=93 Identities=8% Similarity=-0.004 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHH
Q ss_conf 3444567664687653200111112355772047999878984402458874054545-----78998720499999999
Q gi|254780891|r 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLA 190 (215)
Q Consensus 116 ~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~ 190 (215)
.++..|+..|+..+.+........ ......+.|.|+++. .+.+.++|++++. +...|+|||||+|+.++
T Consensus 90 ~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~g~GLGL~ivk~iv 163 (189)
T 1i58_A 90 NNVVIEVEDDGRGIDKEKIIRKAI-----EKGLIDESKAATLSD-QEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVV 163 (189)
T ss_dssp TEEEEEEEECSSCCCHHHHHHHHH-----HTTSSCHHHHTTCCH-HHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHH
T ss_pred CEEEEEECCCCCCCCCHHCCHHHE-----EEEECCCCCCCCCCH-HHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 839999758865546101001000-----122012244556302-43343031102212442356898837499999999
Q ss_pred HHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 970987999987799269999941
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
+.|||+|+++|.+|+||+|++.||
T Consensus 164 e~hgG~I~v~S~~g~GTtf~i~lP 187 (189)
T 1i58_A 164 ESLNGSISIESEKDKGTKVTIRLP 187 (189)
T ss_dssp HHTTCEEEEEEETTTEEEEEEEEE
T ss_pred HHCCCEEEEEECCCCCEEEEEEEE
T ss_conf 987998999961899779999995
No 23
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.33 E-value=9e-07 Score=61.54 Aligned_cols=83 Identities=6% Similarity=-0.132 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---CC-CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2344456766468765320---01-1111235577204799987898440245887405454578998720499999999
Q gi|254780891|r 115 RAKILLNLFMVAHASLPRG---GK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~~g---g~-I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~ 190 (215)
+.-++..++.||++|...+ +. +.+.....++.+.++|+|+|+|+.+++ ....+|.||+|++.++
T Consensus 298 ~~l~v~E~~~Nav~Hg~~~~~~~~~~~~~~~~~~~~l~i~v~D~G~g~~~~~------------~~~~~GrGl~lv~~l~ 365 (399)
T 3ke6_A 298 IVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHRD------------GARGRGRGLAMAEALV 365 (399)
T ss_dssp HHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC------------------------CHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCC------------CCCCCCCHHHHHHHHH
T ss_conf 9999999999899836788899719999999439999999998989989899------------9999965799999998
Q ss_pred HHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 970987999987799269999941
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
. ++.+++.++ |+++++..+
T Consensus 366 d----~~~~~~~~~-G~~v~l~~~ 384 (399)
T 3ke6_A 366 S----EARIMHGAG-GTTATLTHR 384 (399)
T ss_dssp S----EEEEEEETT-EEEEEEEEE
T ss_pred H----CEEEEECCC-CEEEEEEEE
T ss_conf 5----777899999-499999998
No 24
>1joy_A Protein (ENVZ_ecoli); histidine kinase, sensory transduction, osmolarity sensor protein, inner membrane, phosphorylation, transferase; NMR {Escherichia coli} SCOP: a.30.2.1
Probab=98.21 E-value=1.5e-06 Score=60.10 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997745454227999999999996144301478988899999999863
Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65 (215)
Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~ 65 (215)
..+.+.|||||||||++|.++++++.++ .++..+.+.+.+.++..+++
T Consensus 13 ~~f~a~iSHeLRTPLt~i~~~~e~l~~~--~~~~~~~i~~~~~~m~~lv~ 60 (67)
T 1joy_A 13 TLLMAGVSHDLRTPLTRIRLATEMMSEQ--DGYLAESINKDIEECNAIIE 60 (67)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 9999875276256898999999871346--89999999999999999999
No 25
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.65 E-value=0.0003 Score=45.47 Aligned_cols=90 Identities=11% Similarity=0.034 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC---CCCCCCCC-CCCCEEEEEEECCCCCCCHHHHHHHHCCC-CC-------CCCCCCC
Q ss_conf 0123444567664687653200---11111235-57720479998789844024588740545-45-------7899872
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRGG---KVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGN-VE-------STIDSHD 180 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~-~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~-~~-------~~~~g~G 180 (215)
..+..++.-|+.||++|...-| .|.|.+.. +++...|+|+|+|.||+ .+.+...|..- .+ .-.+-+|
T Consensus 36 ~~L~~~v~Elv~Na~Da~~~~g~~~~I~v~i~~~~~~~~~i~V~DnG~Gm~-~d~~~~~l~~l~~sgK~~~~~~s~G~~G 114 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIV-REQIPKVFAKLLYGSRFHALKQSRGQQG 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCC-GGGHHHHHSCCCCC--CCCCC-CCSSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCC-HHHHHHHHHEECCCCCCCCCCCCCCCCC
T ss_conf 178998999997188689763999825999996899646999998489999-8999998608466778766511799766
Q ss_pred HHHHHHHHHHHHC-CCEEEEEEEC
Q ss_conf 0499999999970-9879999877
Q gi|254780891|r 181 IQFYYVILLAHEN-KIRLLPEIID 203 (215)
Q Consensus 181 lGl~~~~~i~~~~-gG~i~v~~~~ 203 (215)
+|...+-.+.... +..+.|.+..
T Consensus 115 vG~~gv~~~S~~~va~~v~V~s~~ 138 (621)
T 2q2e_B 115 IGISAAVLYAQMTAGRHTKILSKT 138 (621)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEEC
T ss_pred CCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 567688887686428638999961
No 26
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.55 E-value=8.8e-05 Score=48.88 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC--------------
Q ss_conf 45676646876532--------------00111112355772047999878984402458874054--------------
Q gi|254780891|r 119 LLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-------------- 170 (215)
Q Consensus 119 l~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~-------------- 170 (215)
++-||+||.+|+.. .+.+.|.+..+.+.-.|+|+|+|.||. .+.+..++..
T Consensus 31 lRELisNa~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~D~GiGMt-~~e~~~~lgtIa~Sgt~~f~~~~~ 109 (677)
T 2cg9_A 31 LRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMT-KAELINNLGTIAKSGTKAFMEALS 109 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSCCCC-HHHHHGGGSSSSSCTTHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988862999999999885369121167886069999758889899995188889-999999877771142599999854
Q ss_pred -CC-CCCCCCCCHHHHHHHHHHHH
Q ss_conf -54-57899872049999999997
Q gi|254780891|r 171 -NV-ESTIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 171 -~~-~~~~~g~GlGl~~~~~i~~~ 192 (215)
.. ..-.+-.|+|+|-|..+|..
T Consensus 110 ~~~~~~~IGqFGvGfyS~FmVad~ 133 (677)
T 2cg9_A 110 AGADVSMIGQFGVGFYSLFLVADR 133 (677)
T ss_dssp SSCCCCCCCCTTCTTGGGGGTEEE
T ss_pred CCCCCCHHCCCCCCCEEEEEEECE
T ss_conf 578601230476101467886163
No 27
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00059 Score=43.62 Aligned_cols=82 Identities=11% Similarity=0.059 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC------------CCCH
Q ss_conf 1234445676646876532001111123557720479998789844024588740545457899------------8720
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID------------SHDI 181 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~------------g~Gl 181 (215)
...+++--|+.||++|. ...|.|.+.. ++.-.|.|.|+|.||. ++++...+....+.|.. -.|-
T Consensus 25 ~p~svvkELveNsiDA~--At~I~v~i~~-~g~~~i~V~DnG~Gi~-~~d~~~~~~r~~TSK~~~~~dl~~~~t~GfRGe 100 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDAN--ANQIEIIFKD-YGLESIECSDNGDGID-PSNYEFLALKHYTSKIAKFQDVAKVQTLGFRGE 100 (367)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEET-TTTSEEEEEECSCCCC-GGGTTTTTCCEEC---------CCCCEEEETTH
T ss_pred CHHHHHHHHHHHHHCCC--CCEEEEEEEC-CCEEEEEEEECCCCCC-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 88999999997776489--5989999987-9846999998999889-789987654205875553223311246664407
Q ss_pred HHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 49999999997098799998779
Q gi|254780891|r 182 QFYYVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 182 Gl~~~~~i~~~~gG~i~v~~~~~ 204 (215)
+|+-...+ +++.+.+...
T Consensus 101 AL~sI~~v-----s~l~I~S~~~ 118 (367)
T 3h4l_A 101 ALSSLCGI-----AKLSVITTTS 118 (367)
T ss_dssp HHHHHHHS-----SEEEEEEESS
T ss_pred HHHHHHHH-----CCEEEEEEEC
T ss_conf 89988752-----5647998505
No 28
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=97.38 E-value=0.00063 Score=43.46 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC------------CCCCH
Q ss_conf 123444567664687653200111112355772047999878984402458874054545789------------98720
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------------DSHDI 181 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~------------~g~Gl 181 (215)
...+++.-|+.||++|. -..|.|.+.. ++.-.|.|.|+|.||+ ++++........+.+. +-.|.
T Consensus 34 ~~~svvkELieNSiDA~--At~I~I~v~~-~g~~~I~V~DnG~Gi~-~~dl~~~~~~~~tsk~~~~~d~~~~~t~GfRGe 109 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAG--ATNIDLKLKD-YGVDLIEVSDNGCGVE-EENFEGLTLKHHTSKIQEFADLTQVETFGFRGE 109 (365)
T ss_dssp CHHHHHHHHHHHHHHTT--CSEEEEEEEG-GGTSEEEEEECSCCCC-GGGSGGGGC----------CCTTCSEEESSSSS
T ss_pred CHHHHHHHHHHHHHCCC--CCEEEEEEEC-CCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 88899999997787289--8889999987-9843899998998759-899864542023677662336533455774227
Q ss_pred HHHHHHHHHHHCCCEEEEEEE
Q ss_conf 499999999970987999987
Q gi|254780891|r 182 QFYYVILLAHENKIRLLPEII 202 (215)
Q Consensus 182 Gl~~~~~i~~~~gG~i~v~~~ 202 (215)
+|+-...+ +++.+.+.
T Consensus 110 aL~si~~~-----s~~~i~S~ 125 (365)
T 1h7s_A 110 ALSSLCAL-----SDVTISTC 125 (365)
T ss_dssp HHHHHHHH-----SEEEEEEE
T ss_pred HHHHHHHH-----CCEEEEEE
T ss_conf 88888862-----45158884
No 29
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.25 E-value=0.00015 Score=47.34 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC------------
Q ss_conf 45676646876532--------------0011111235577204799987898440245887405454------------
Q gi|254780891|r 119 LLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------------ 172 (215)
Q Consensus 119 l~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~------------ 172 (215)
++-||.||.+|+.. +....|.+..+.+.-.|.|+|+|.|+. .+.+.+++..-.
T Consensus 50 lRELisNA~DAi~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~i~DnGIGMt-~~El~~~LgtIa~Sgt~~fl~~~~ 128 (666)
T 2o1u_A 50 LRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMT-REELVKNLGTIAKSGTSEFLNKMT 128 (666)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHTTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9989874999999999986358200278888469998659899899995388889-999998723230132899999987
Q ss_pred --------CCC-CCCCCHHHHHHHHHHHH
Q ss_conf --------578-99872049999999997
Q gi|254780891|r 173 --------EST-IDSHDIQFYYVILLAHE 192 (215)
Q Consensus 173 --------~~~-~~g~GlGl~~~~~i~~~ 192 (215)
... .+-.|+|+|=|..++.+
T Consensus 129 ~~~~~~~~~~~~IGqFGvGfyS~FmVad~ 157 (666)
T 2o1u_A 129 EAQEDGQSTSELIGQFGVGFYSAFLVADK 157 (666)
T ss_dssp -----------------CTTGGGGGTEEE
T ss_pred HHHHCCCCHHHHHCCCCCCCEEEEEEEEE
T ss_conf 42101231033340577451134278679
No 30
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=97.17 E-value=0.00044 Score=44.43 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 123444567664687653200111112355772047999878984402458874054545789
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~ 176 (215)
...+++--|+.||++|. ...|.|.+.. ++.-.|.|.|+|.||+ ++++...+....+.+.
T Consensus 28 ~~~s~vkELieNsiDA~--At~I~i~i~~-~g~~~I~V~DnG~Gi~-~~dl~~~~~~~~tSK~ 86 (348)
T 3na3_A 28 RPANAIKEMIENCLDAK--STSIQVIVKE-GGLKLIQIQDNGTGIR-KEDLDIVCERFTTSKL 86 (348)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEEG-GGTSEEEEEECSCCCC-GGGGGTTTSTTCCSSC
T ss_pred CHHHHHHHHHHHHHCCC--CCEEEEEEEC-CCEEEEEEEECCCCCC-HHHHHHHHHCCCCCCC
T ss_conf 88999999986554489--9889999998-9878999998998889-8999999752457677
No 31
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structural genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum 3D7}
Probab=97.15 E-value=0.00043 Score=44.50 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC----------------CCCC-CCCCCCCHHHHHHHHHHHH----
Q ss_conf 011111235577204799987898440245887405----------------4545-7899872049999999997----
Q gi|254780891|r 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----------------GNVE-STIDSHDIQFYYVILLAHE---- 192 (215)
Q Consensus 134 g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~----------------~~~~-~~~~g~GlGl~~~~~i~~~---- 192 (215)
....|.+..+.+.-.|.|+|+|.||.-++. .+.+. +... .-.+..|+|+|-|..++.+
T Consensus 117 ~~~~I~I~~Dk~~~tltI~DnGIGMt~~el-~~~LgTIa~Sgt~~F~~~l~~~~~~~~lIGqFGVGFySaFmVAdkV~V~ 195 (272)
T 3ied_A 117 KKLIIKIKPDKEKKTLTITDNGIGMDKSEL-INNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVY 195 (272)
T ss_dssp GGCCEEEEEETTTTEEEEEECSCCCCHHHH-HHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCEEECHHHH-HHHHCCCCCCCHHHHHHHHHCCCCCCCHHCCCCCCEEEEEEECCEEEEE
T ss_conf 673499887587898999943323428999-8773555646539999864214443220123575417888760689999
Q ss_pred -------------CCCEEEEEEE----------CCCCEEEEEEEE
Q ss_conf -------------0987999987----------799269999941
Q gi|254780891|r 193 -------------NKIRLLPEII----------DDHNVVLSALLE 214 (215)
Q Consensus 193 -------------~gG~i~v~~~----------~~~g~~f~~~l~ 214 (215)
-.|..++... .+.||.+++.|.
T Consensus 196 Tk~~~~~~~W~S~g~g~y~i~~~~~~~~~~~~~~~rGT~I~L~Lk 240 (272)
T 3ied_A 196 TKKEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLK 240 (272)
T ss_dssp EESSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEEC
T ss_pred ECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 757884168875599856886443345555677999708999989
No 32
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.14 E-value=0.00055 Score=43.81 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHH--------------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC--------------
Q ss_conf 44567664687653--------------20011111235577204799987898440245887405--------------
Q gi|254780891|r 118 ILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-------------- 169 (215)
Q Consensus 118 vl~NLi~NA~~a~~--------------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~-------------- 169 (215)
-|+-||+||.+|+. ..+.+.|.+..+.+.-.|.|+|+|.||.-++ +...+.
T Consensus 50 FLRELIsNAsDA~~K~r~~~~~~~~~~~~~~~~~I~i~~D~~~~~l~I~DnGIGMt~~e-l~~~LgtIa~Sgt~~f~~~~ 128 (281)
T 3peh_A 50 FLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVD-LINNLGTIAKSGTSNFLEAI 128 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH-HHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCHHH-HHHHHHHHCCCCHHHHHHHH
T ss_conf 17778867999999999997369211178876269988739999899997981567899-99775331343438888764
Q ss_pred --C-CCCCCCCCCCHHHHHHHHHHHH
Q ss_conf --4-5457899872049999999997
Q gi|254780891|r 170 --G-NVESTIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 170 --~-~~~~~~~g~GlGl~~~~~i~~~ 192 (215)
. ....-.+-.|+|+|-|..+++.
T Consensus 129 ~~~~~d~~lIGqFGVGFySaFmVAdk 154 (281)
T 3peh_A 129 SKSGGDMSLIGQFGVGFYSAFLVADK 154 (281)
T ss_dssp HHTTCCSTTTTTTTCGGGGGGGTEEE
T ss_pred HHCCCCHHHHHHCCCCEEEEEEECCE
T ss_conf 41255233443203122677640677
No 33
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.12 E-value=0.00072 Score=43.08 Aligned_cols=60 Identities=12% Similarity=0.214 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 1234445676646876532001111123557720479998789844024588740545457899
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~ 177 (215)
...+++--|+.||++|. -..|.|.+.. ++.-.|.|.|+|.||+ ++++........+.|..
T Consensus 24 ~~~~~vkELveNSiDA~--At~I~I~v~~-~g~~~I~V~DnG~GI~-~~dl~~~~~r~~TSK~~ 83 (333)
T 1b63_A 24 RPASVVKELVENSLDAG--ATRIDIDIER-GGAKLIRIRDNGCGIK-KDELALALARHATSKIA 83 (333)
T ss_dssp SHHHHHHHHHHHHHHTT--CSEEEEEEEG-GGTSEEEEEECSCCCC-GGGHHHHHSTTCCSSCC
T ss_pred CHHHHHHHHHHHHCCCC--CCEEEEEEEC-CCEEEEEEEECCCCCC-HHHHHHHHHHHCCCCCC
T ss_conf 78999999986302789--8989999987-9765999998996768-76888876641057789
No 34
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=96.93 E-value=0.00082 Score=42.71 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHH--------------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC----C---------
Q ss_conf 4567664687653--------------200111112355772047999878984402458874054----5---------
Q gi|254780891|r 119 LLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG----N--------- 171 (215)
Q Consensus 119 l~NLi~NA~~a~~--------------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~----~--------- 171 (215)
+.-||.||.+|+. .++.+.|.+..+.+.-.|+|+|+|.||.-+ .+.+.+.. .
T Consensus 32 lRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~-el~~~lgtIa~Sgt~~f~~~~~ 110 (559)
T 1y4s_A 32 LRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRD-EVIDHLGTIAKSGTKSFLESLG 110 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTTEEEEEECSSCCCHH-HHHHHHSCCSCCCCCCTTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH-HHHHHHHHHEEHHHHHHHHHHH
T ss_conf 888887299999999998614931007898827999973889989999628889999-9998511325351899999845
Q ss_pred --CC---CCCCCCCHHHHHHHHHHH
Q ss_conf --45---789987204999999999
Q gi|254780891|r 172 --VE---STIDSHDIQFYYVILLAH 191 (215)
Q Consensus 172 --~~---~~~~g~GlGl~~~~~i~~ 191 (215)
.. .-.+-.|+|+|=|..++.
T Consensus 111 ~~~~~~~~~iGqFGvGfyS~FmVa~ 135 (559)
T 1y4s_A 111 SDQAKDSQLIGQFGVGFYSAFIVAD 135 (559)
T ss_dssp ------CCCCSSCCCSGGGHHHHEE
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 3125544545532100124554466
No 35
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=96.90 E-value=0.00071 Score=43.11 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHH--------------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC----CCC-------
Q ss_conf 44567664687653--------------20011111235577204799987898440245887405----454-------
Q gi|254780891|r 118 ILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GNV------- 172 (215)
Q Consensus 118 vl~NLi~NA~~a~~--------------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~----~~~------- 172 (215)
-+.-||+||.+|+. .++.+.|.+..+.+.-.|+|+|+|.||.-+| +...+. ...
T Consensus 31 flRELisNa~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~tl~i~DnGiGMt~~e-l~~~LgtIa~Sgt~~f~~~~ 109 (624)
T 2ioq_A 31 FLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE-VIDHLGTIAKSGTKSFLESL 109 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH-HHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 69999872999999999987159131078888469999759889899995388889999-99876676024179999986
Q ss_pred ----CCC---CCCCCHHHHHHHHHHH
Q ss_conf ----578---9987204999999999
Q gi|254780891|r 173 ----EST---IDSHDIQFYYVILLAH 191 (215)
Q Consensus 173 ----~~~---~~g~GlGl~~~~~i~~ 191 (215)
... .+-.|+|+|=|..++.
T Consensus 110 ~~~~~~~~~~IGqFGvGfyS~FmVad 135 (624)
T 2ioq_A 110 GSDQAKDSQLIGQFGVGFYSAFIVAD 135 (624)
T ss_dssp -----CCTTHHHHHHHHHHHHHHHEE
T ss_pred HHHCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 64102443435423212000133378
No 36
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.89 E-value=0.0055 Score=37.45 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCCC-CC-----
Q ss_conf 01234445676646876532--00111112355772047999878984402----------45-88740545-45-----
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDGN-VE----- 173 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~~-~~----- 173 (215)
.-+.+++.-++.||++.... ...|.|++..++ .|+|+|+|+||+++ |. |..+..+. +.
T Consensus 33 ~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dg---sisV~ddGrGIPv~~h~~~~~~~~Elif~~L~tg~nfd~~~~~ 109 (391)
T 1ei1_A 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 109 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS---CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCS
T ss_pred CCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCE
T ss_conf 7220688888884323521499867999992798---2999979986767776666851008999997136777998743
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 789987204999999999709879999877992699999
Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
...+.+|+|+.++--+-+ .+.++...+ |-.+...
T Consensus 110 ~sgG~nGvGakl~NalS~----~f~v~~~~~-gk~~~q~ 143 (391)
T 1ei1_A 110 VSGGLHGVGVSVVNALSQ----KLELVIQRE-GKIHRQI 143 (391)
T ss_dssp SCSCCSSCHHHHHHHTEE----EEEEEEEET-TEEEEEE
T ss_pred EECCCCCCCEEEEEEEEC----CEEEEEEEC-CEEEEEE
T ss_conf 316887654279999615----559999969-9899999
No 37
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, cytoplasm, ATP-binding, phosphoprotein, stress response, nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2akp_A
Probab=96.86 E-value=0.00074 Score=43.01 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHH--------------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC----------
Q ss_conf 44567664687653--------------200111112355772047999878984402458874054545----------
Q gi|254780891|r 118 ILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---------- 173 (215)
Q Consensus 118 vl~NLi~NA~~a~~--------------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~---------- 173 (215)
.+.-|++||.+|+. .++.+.|.+..+++.-.+.|+|+|.||. .+.+.+.+..-..
T Consensus 30 flRELisNa~DA~~k~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt-~~el~~~L~ti~~S~t~~~~~~~ 108 (220)
T 2wer_A 30 FLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMT-KAELINNLGTIAKSGTKAFMEAL 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCC-HHHHHHHTTTSCCTTHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCEEEEECCCCEEC-HHHHHHHHHHHHCCCCHHHHHHC
T ss_conf 18788867999999999986459501125788458998538887799961873113-89987654434033437777530
Q ss_pred ------CCCCCCCHHHHHHHHHHHHC
Q ss_conf ------78998720499999999970
Q gi|254780891|r 174 ------STIDSHDIQFYYVILLAHEN 193 (215)
Q Consensus 174 ------~~~~g~GlGl~~~~~i~~~~ 193 (215)
.-.+-.|+|+|-+..++..-
T Consensus 109 ~~~~~~~~IGqFGIGfyS~FmVad~V 134 (220)
T 2wer_A 109 SAGADVSMIGQFGVGFYSLFLVADRV 134 (220)
T ss_dssp TTTCCGGGGGGGTCGGGGGGGTEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEEEECCEE
T ss_conf 13654130353100477888631769
No 38
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.69 E-value=0.00059 Score=43.65 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC---------
Q ss_conf 4445676646876532--------------00111112355772047999878984402458874054545---------
Q gi|254780891|r 117 KILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--------- 173 (215)
Q Consensus 117 qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~--------- 173 (215)
-.+.-||.||.+|+.. ...+.|.+..+.+.-.|.|+|+|.||..++ +...|.....
T Consensus 50 ifLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~~e-l~~~l~tia~S~~~~f~~~ 128 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDE-VIDHLGTIAKSGTKSFLES 128 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTTEEEEEECSSCCCHHH-HHHHHTTCCCTTHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 453108765999999999987159501058877436888648998899997773324788-6666502202323889875
Q ss_pred --C-------CCCCCCHHHHHHHHHHH
Q ss_conf --7-------89987204999999999
Q gi|254780891|r 174 --S-------TIDSHDIQFYYVILLAH 191 (215)
Q Consensus 174 --~-------~~~g~GlGl~~~~~i~~ 191 (215)
. -.+..|+|+|-+..++.
T Consensus 129 ~~~~~~~~~~~IGqFGIGf~S~FmVad 155 (235)
T 2ior_A 129 LGSDQAKDSQLIGQFGVGFYSAFIVAD 155 (235)
T ss_dssp CCSCHHHHHHHHTTCCCCGGGGGGTEE
T ss_pred HHHCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 331133441100234500255533067
No 39
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.61 E-value=0.00034 Score=45.17 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC----------
Q ss_conf 445676646876532--------------00111112355772047999878984402458874054545----------
Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---------- 173 (215)
Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~---------- 173 (215)
-++-||+||.+|+.. ...+.|.+..+.+.-.|.|+|+|.||.-.+ +.+.+.....
T Consensus 32 flRELisNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~e-l~~~LgtIa~Sgt~~f~~~~ 110 (269)
T 1qy5_A 32 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREE-LVKNLGTIAKSGTSEFLNKM 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHH-HHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCHHH-HHHHHHHHHCCCHHHHHHHH
T ss_conf 18889876999999999985549522368888358841268874899982763335999-99887766310179999863
Q ss_pred --------CC---CCCCCHHHHHHHHHHHH
Q ss_conf --------78---99872049999999997
Q gi|254780891|r 174 --------ST---IDSHDIQFYYVILLAHE 192 (215)
Q Consensus 174 --------~~---~~g~GlGl~~~~~i~~~ 192 (215)
.. .+-.|+|+|-+..++..
T Consensus 111 ~~~~~~~~~~~~~iGqFGvGfyS~FmVAd~ 140 (269)
T 1qy5_A 111 TEAQEDGQSTSELIGQFGVGFYSAFLVADK 140 (269)
T ss_dssp HHHHHHTCCCHHHHHHTTCGGGGGGGTEEE
T ss_pred HHCCCCCCCCHHHHHHCCCCEEEEEEEEEE
T ss_conf 421234431022353257421788986248
No 40
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622}
Probab=96.56 E-value=0.0095 Score=35.97 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHH-HHH-HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC-CCCCC-----CCCCCHHHH
Q ss_conf 0123444567664687-653-200111112355772047999878984402458874054-54578-----998720499
Q gi|254780891|r 113 RERAKILLNLFMVAHA-SLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVEST-----IDSHDIQFY 184 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~-a~~-~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~-~~~~~-----~~g~GlGl~ 184 (215)
.-+..++.-++.||++ |+. ....|.|.+..++ .|+|+|+|+||+ -+....++.+ .+..+ .+-+| |..
T Consensus 29 ~gl~hlv~EivdNsvDEa~aG~~~~I~V~i~~Dg---~IsV~dnGrGIP-v~~~~~l~~g~~f~~~~~~~~gG~~G-g~s 103 (369)
T 3cwv_A 29 YGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG---SIALFCTSRTVT-AENLVRVATGAGFLGRPPGDGWGWDS-MLV 103 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---CEEEEEEESSCC-HHHHHHHHTTTTGGGSSCCCSTTTTS-SHH
T ss_pred CCCEEEEEEEEECCHHHHHCCCCCEEEEEECCCC---CEEEEECCCCCE-EEEEEEEEECCCCCCCCCCCCCCCCC-EEE
T ss_conf 8655899888653220764488877999999999---699992899952-20778874102336877766534665-399
Q ss_pred HHHHHHHHCCCEEEEEEECC
Q ss_conf 99999997098799998779
Q gi|254780891|r 185 YVILLAHENKIRLLPEIIDD 204 (215)
Q Consensus 185 ~~~~i~~~~gG~i~v~~~~~ 204 (215)
++....-.+.|+...+
T Consensus 104 ----vvNalS~~~~Vev~r~ 119 (369)
T 3cwv_A 104 ----VSLALSSRYQVDIWAD 119 (369)
T ss_dssp ----HHHHTEEEEEEEEEET
T ss_pred ----EEEEEEEEEEEEEEEC
T ss_conf ----9999820899999979
No 41
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=96.56 E-value=0.013 Score=35.06 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCEEEEEEECCCCCCCH---H----HHHHHH----CC-CCC----
Q ss_conf 012344456766468765320---0111112355772047999878984402---4----588740----54-545----
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFP---E----KFTQIV----DG-NVE---- 173 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~g---g~I~i~~~~~~~~~~i~V~D~G~Gi~~~---e----~~~~~~----~~-~~~---- 173 (215)
.-+.+++.-++.||++..-.| ..|.|++..+ .-.|+|+|+|.||+.+ + ..+-+| .+ .|.
T Consensus 51 ~GL~~l~~EildNavDe~~~g~~~~~I~V~i~~d--~~sitV~DnGrGIPv~~h~~~~~~~~e~i~t~Lhaggkfd~~~y 128 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE--NNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEK 128 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT--TTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGGGC
T ss_pred CEEEEEEEEEEECHHHHHHHCCCCCEEEEEEECC--CCEEEEEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 7005899899996554886557984799999779--99899998996532002156673210246778413156689862
Q ss_pred -CCCCCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf -7899872049999999997098799998
Q gi|254780891|r 174 -STIDSHDIQFYYVILLAHENKIRLLPEI 201 (215)
Q Consensus 174 -~~~~g~GlGl~~~~~i~~~~gG~i~v~~ 201 (215)
...+.||+|..+|-.+-+ .+.|+.
T Consensus 129 k~sgGlhGVG~svvNalS~----~~~Vev 153 (400)
T 1zxm_A 129 KVTGGRNGYGAKLCNIFST----KFTVET 153 (400)
T ss_dssp CCCSCCSSCHHHHHHHTEE----EEEEEE
T ss_pred EEECCCCCCCHHHHHHCCH----HHEEEE
T ss_conf 3634644525255511034----114556
No 42
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 2esa_A*
Probab=96.44 E-value=0.0011 Score=41.86 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC----CC---CCCC-
Q ss_conf 445676646876532--------------0011111235577204799987898440245887405----45---4578-
Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GN---VEST- 175 (215)
Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~----~~---~~~~- 175 (215)
.++-||.||.+|+.. ...+.|.+..+.+.-.+.|+|+|.||. .+.+.+.+. .. +..+
T Consensus 36 fLRELiqNa~DA~~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt-~~el~~~lgtIa~Sgt~~f~~~~ 114 (236)
T 2gqp_A 36 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMT-REELVKNLGTIAKSGTSEFLNKM 114 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 09999878999999999996649410046777169997658888899984552215-99998876766621428888765
Q ss_pred -------------CCCCCHHHHHHHHHHHH
Q ss_conf -------------99872049999999997
Q gi|254780891|r 176 -------------IDSHDIQFYYVILLAHE 192 (215)
Q Consensus 176 -------------~~g~GlGl~~~~~i~~~ 192 (215)
.+-.|+|+|=|..++..
T Consensus 115 ~~~~~~~~~~~~lIGqFGVGFyS~FmVAd~ 144 (236)
T 2gqp_A 115 TEAQEDGQSTSELIGQFGVGFYSAFLVADK 144 (236)
T ss_dssp ---------CHHHHHHTTCGGGGGGGTEEE
T ss_pred HHHHCCCCCCHHHHHHCCCCCEEEEEEECE
T ss_conf 532003453111353257230576733055
No 43
>3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A*
Probab=96.34 E-value=0.012 Score=35.26 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCCC-CC-----
Q ss_conf 012344456766468765320--0111112355772047999878984402----------45-88740545-45-----
Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDGN-VE----- 173 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~~-~~----- 173 (215)
..+.+++.-++.||++..-.+ ..|.+.+..++ .|+|+|+|+||++. +. |..+..+. +.
T Consensus 20 ~gl~~i~~Eil~NavDe~~~~~~~~i~v~i~~dg---~isV~ddG~GIPv~~h~~~~~~~~elif~~l~tg~nyd~~~~~ 96 (203)
T 3g7e_A 20 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 96 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS---CEEEEECSSCCCCSCCTTTCCCHHHHHHHSTTCCSEECTTCCE
T ss_pred CCCEEEEEEEEEEHHHHHCCCCCCEEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCE
T ss_conf 7274899988883445631599976899996799---7999989977456445766982206899898404778888613
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf 78998720499999999970987999987799269999
Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 (215)
Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~ 211 (215)
...+.+|+|+.++--+.+. +.++...+ |-.++.
T Consensus 97 ~~gG~nG~G~kl~N~~S~~----f~v~~~~~-gk~~~q 129 (203)
T 3g7e_A 97 VSGGLHGVGVSVVNALSQK----LELVIQRE-GKIHRQ 129 (203)
T ss_dssp ESCCCCSSCHHHHHHTEEE----EEEEEEET-TEEEEE
T ss_pred ECCCCCCCCCEEEEEEEEE----EEEEEEEC-CEEEEE
T ss_conf 1167578672898986218----99999989-999999
No 44
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.22 E-value=0.0031 Score=39.07 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHH--------------HHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC---CC---------
Q ss_conf 44567664687653--------------20011111235577204799987898440245887405---45---------
Q gi|254780891|r 118 ILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD---GN--------- 171 (215)
Q Consensus 118 vl~NLi~NA~~a~~--------------~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~---~~--------- 171 (215)
.|+-||+||.+|+. ....+.|.+..+.+.-.+.|+|+|.||.-++....+-. ..
T Consensus 72 FLRELIsNAsDAi~k~r~~~~~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt~~el~~~lgtIa~Sg~~~f~~~~~ 151 (264)
T 1yc1_A 72 FLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQ 151 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCHHCCCCHHHHHHHH
T ss_conf 08888857999999999986539522467987369998768888899996898777999997616500146388898754
Q ss_pred --CC-CCCCCCCHHHHHHHHHHHH
Q ss_conf --45-7899872049999999997
Q gi|254780891|r 172 --VE-STIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 172 --~~-~~~~g~GlGl~~~~~i~~~ 192 (215)
.. .-.+-.|+|+|-|..++..
T Consensus 152 ~~~d~~~IGqFGVGFyS~FMVAdk 175 (264)
T 1yc1_A 152 AGADISMIGQFGVGFYSAYLVAEK 175 (264)
T ss_dssp TTCCGGGGGGGTCGGGGHHHHEEE
T ss_pred HCCCCCEECCCCCCEEEECCCCCE
T ss_conf 025644000015221220234775
No 45
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=96.13 E-value=0.015 Score=34.67 Aligned_cols=85 Identities=11% Similarity=0.113 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC------CC
Q ss_conf 001234445676646876532--00111112355772047999878984402----------45-8874054------54
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG------NV 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~------~~ 172 (215)
..-+.+++.-+|.||++..-. ...|.|.+..++ .|+|+|+|+||+.+ |. |..+..+ .+
T Consensus 30 ~~gl~~i~~Eil~Na~De~~~~~~~~I~V~i~~dg---~isV~ddGrGIPv~~h~~~~~~~~e~i~~~L~tg~nfd~~~~ 106 (390)
T 1kij_A 30 VEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAY 106 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSC
T ss_pred CCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCC---EEEEEECCCCEECCCCCCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 87221788766685666743699966999996998---599998887266478667797101999989845676578875
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 5789987204999999999709879999877
Q gi|254780891|r 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203 (215)
Q Consensus 173 ~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~ 203 (215)
....+.+|+|+.++--+ .=.+.|+...
T Consensus 107 k~sgG~nGvGa~l~Nal----S~~f~v~v~~ 133 (390)
T 1kij_A 107 KVSGGLHGVGASVVNAL----SEWTVVEVFR 133 (390)
T ss_dssp CCCSCSSTTSHHHHHHT----EEEEEEEEEE
T ss_pred CCCCCCCCCCCHHHHHC----CHHEEEEEEE
T ss_conf 30267576442765232----5203899980
No 46
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.09 E-value=0.013 Score=35.19 Aligned_cols=78 Identities=13% Similarity=0.179 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CC----
Q ss_conf 0012344456766468765320---0111112355772047999878984402----------45-8874054-54----
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NV---- 172 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g---g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~---- 172 (215)
..-+.+++.-+|.||++..-.| ..|.|.+..++ -.|+|+|+|.||+.+ |. |..+..+ .+
T Consensus 62 ~~Gl~~l~~EildNavDe~~~g~~~~~I~V~i~~~d--gsisV~DnGrGIPv~~h~~~~~~~~E~i~t~LhaGgkfd~~~ 139 (418)
T 1pvg_A 62 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEE--HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTT--TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred CCEEEEEEEEEEECHHHHHHCCCCCCEEEEEEECCC--CEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 660024656899980247651688877999996799--889999699014610436678641157887740355445775
Q ss_pred -CCCCCCCCHHHHHHHHHHH
Q ss_conf -5789987204999999999
Q gi|254780891|r 173 -ESTIDSHDIQFYYVILLAH 191 (215)
Q Consensus 173 -~~~~~g~GlGl~~~~~i~~ 191 (215)
....+.||+|..++-.+-+
T Consensus 140 yk~SGGlhGvGasvvNalS~ 159 (418)
T 1pvg_A 140 KKVTGGRNGYGAKLCNIFST 159 (418)
T ss_dssp CCCCSCCSSCHHHHHHHTEE
T ss_pred CEECCCCCCCCHHHHHHHHH
T ss_conf 30407875526402276635
No 47
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=95.85 E-value=0.028 Score=32.99 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CC-----CC
Q ss_conf 1234445676646876532--00111112355772047999878984402----------45-8874054-54-----57
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NV-----ES 174 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~-----~~ 174 (215)
.+..++.-++.||++-.-. ...|.|++..++ .|+|.|+|+||+++ |. |..+..+ .+ ..
T Consensus 31 gl~~~~~EildNavDe~~~~~~~~I~V~i~~dg---~isV~dnGrGIPv~~h~~~~~~~~elif~~L~tg~nfd~~~~k~ 107 (390)
T 1s16_A 31 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ---SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 107 (390)
T ss_dssp STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS---CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCSSSSSCSS
T ss_pred CCCEEEEEEEECCHHHHHCCCCCEEEEEECCCC---EEEEEECCCCEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCE
T ss_conf 852078699874650674299967999991898---69999889950004565668771388898760367678877423
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf 8998720499999999970987999987799269999
Q gi|254780891|r 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 (215)
Q Consensus 175 ~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~ 211 (215)
..+.+|+|+.++--+-+. +.++...+ |-+++.
T Consensus 108 sgG~nGvGakl~NalS~~----f~v~v~~~-~~~~~q 139 (390)
T 1s16_A 108 SGGLHGVGISVVNALSKR----VEVNVRRD-GQVYNI 139 (390)
T ss_dssp CSCCSSCHHHHHHHTEEE----EEEEEEET-TEEEEE
T ss_pred ECCCCCCCEEEEEECCCE----EEEEEEEC-CEEEEE
T ss_conf 067576245898962410----79999864-676899
No 48
>3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A*
Probab=95.16 E-value=0.087 Score=29.86 Aligned_cols=86 Identities=6% Similarity=0.078 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHH-HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 01234445676646876-532-0011111235577204799987898440245887405454578998720499999999
Q gi|254780891|r 113 RERAKILLNLFMVAHAS-LPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190 (215)
Q Consensus 113 ~~~~qvl~NLi~NA~~a-~~~-gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~ 190 (215)
.-+.+++.-++.||++= +.. +..|.|.+..++. ++|.|+|.||+.+.. .+.+-.++.+.+...++
T Consensus 19 ~Gl~~l~~EiidNsvDE~~~g~~~~I~v~~~~d~s---i~V~D~GRGIPvd~h----------~~~~~~~~e~i~t~svv 85 (184)
T 3g75_A 19 RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNW---IKVTDNGRGIPVDIQ----------EKMGRPAVEVILTSSVV 85 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCEEEEEECGGGC---EEEEECSSCCCCCBC----------TTTSCBHHHHHHTTCHH
T ss_pred CCCEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCC---EEEEEECCCCCCCCC----------CCCCCCHHHEEEEEEEE
T ss_conf 52223310111356658755977545999968996---999993577511102----------45797513188768994
Q ss_pred HHCCCEEEEEEECCCCEEEEEE
Q ss_conf 9709879999877992699999
Q gi|254780891|r 191 HENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 191 ~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
....=.+.++...++ -+++..
T Consensus 86 NALS~~l~v~v~rdg-k~~~q~ 106 (184)
T 3g75_A 86 NALSQDLEVYVHRNE-TIYHQA 106 (184)
T ss_dssp HHTEEEEEEEEEETT-EEEEEE
T ss_pred EECCCEEEEEEEECC-EEEEEE
T ss_conf 716884999999899-999999
No 49
>1uyl_A HSP 86, heat shock protein HSP 90-alpha; ATPase, chaperone, ATP-binding; 1.4A {Homo sapiens} SCOP: d.122.1.1 PDB: 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* 2vcj_A* 2wi1_A* 2wi2_A* 2wi3_A* 2wi4_A* 2wi5_A* ...
Probab=95.13 E-value=0.021 Score=33.72 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC-------------
Q ss_conf 445676646876532--------------00111112355772047999878984402458874054-------------
Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG------------- 170 (215)
Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~------------- 170 (215)
.++-||+||.+|+.. +..+.|.+..+.+.-.|.|+|+|.||. .+.+.+.+..
T Consensus 44 FLRELIsNAsDA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~tl~I~DnGiGMt-~~el~~~LgtIa~Sgt~~f~~~~ 122 (236)
T 1uyl_A 44 FLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT-KADLINNLGTIAKSGTKAFMEAL 122 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 19999867999999999997459400156777379999869887899996897757-89999872234303619999875
Q ss_pred --CCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf --545-7899872049999999997
Q gi|254780891|r 171 --NVE-STIDSHDIQFYYVILLAHE 192 (215)
Q Consensus 171 --~~~-~~~~g~GlGl~~~~~i~~~ 192 (215)
... .-.+-.|+|+|=|..+++.
T Consensus 123 ~~~~d~~~IGqFGVGFyS~FmVad~ 147 (236)
T 1uyl_A 123 QAGADISMIGQFGVGFYSAYLVAEK 147 (236)
T ss_dssp HTTCCGGGGGGGTCGGGGGGGTEEE
T ss_pred HHCCCCCHHHHCCCCEEEECCCCCE
T ss_conf 5015612221115213540234676
No 50
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=95.10 E-value=0.053 Score=31.25 Aligned_cols=91 Identities=11% Similarity=0.106 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CCC-----C
Q ss_conf 1234445676646876532--00111112355772047999878984402----------45-8874054-545-----7
Q gi|254780891|r 114 ERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NVE-----S 174 (215)
Q Consensus 114 ~~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~~-----~ 174 (215)
.+..++.-++.||++-.-. +..|.|.+..++. ++|.|+|.||+.+ +. |..+..+ .+. .
T Consensus 17 gl~hl~~EildNaiDe~~~g~~~~i~v~~~~d~s---itV~d~GrGIPv~~h~~~~~~~~e~i~t~l~ag~~fd~~~~k~ 93 (201)
T 3fv5_A 17 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 93 (201)
T ss_dssp STHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSC---EEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------------
T ss_pred CCCEEEEEEEECCHHHHHCCCCCEEEEEEECCCC---EEEEECCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 8770786888813548754898379999918980---9999978964685867789714599999970357678876411
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 89987204999999999709879999877992699999
Q gi|254780891|r 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 175 ~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
..+.+|+|+.++--+-+ .+.++...+ |-+++..
T Consensus 94 sgG~~GvG~~~vNalS~----~~~v~v~r~-g~~~~q~ 126 (201)
T 3fv5_A 94 SGGLHGVGISVVNALSK----RVEVNVRRD-GQVYNIA 126 (201)
T ss_dssp --------CHHHHHTEE----EEEEEEEET-TEEEEEE
T ss_pred CCCCCCCCCEEEEEECC----CEEEEEECC-CEEEEEE
T ss_conf 37757605234476516----169999418-9899999
No 51
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides}
Probab=89.79 E-value=0.032 Score=32.60 Aligned_cols=13 Identities=8% Similarity=-0.309 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1234445676646
Q gi|254780891|r 114 ERAKILLNLFMVA 126 (215)
Q Consensus 114 ~~~qvl~NLi~NA 126 (215)
.++|++.||+.||
T Consensus 33 rLRQil~nLvGNA 45 (286)
T 3n0r_A 33 YIRRYARALTGDQ 45 (286)
T ss_dssp HHHHHHHHHHSCH
T ss_pred HHHHHHHHHHCCC
T ss_conf 8999999984682
No 52
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=41.46 E-value=15 Score=15.74 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9977454542279999999999961
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDE 42 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~ 42 (215)
=+..+||.+.+|+.-|...++-|..
T Consensus 18 da~qlS~~L~~P~plv~AMLerL~~ 42 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 3999998867987899999999997
No 53
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=28.72 E-value=25 Score=14.23 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99774545422799999999999614
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEV 43 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~ 43 (215)
=+..+||.|.+|+--|...++-|..-
T Consensus 18 da~qLS~~L~~PlPlv~AMLerL~aM 43 (87)
T 2k02_A 18 EAKQLSARLQTPQPLIDAMLERMEAM 43 (87)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 09999988679878999999999873
No 54
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* 3lxg_A*
Probab=26.13 E-value=17 Score=15.27 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 96768799999774545422
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIIS 28 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrt 28 (215)
++..+..+++.|.++||+.-
T Consensus 103 l~~~e~~alliAal~HDv~H 122 (331)
T 2our_A 103 FTDLERKGLLIACLCHDLDH 122 (331)
T ss_dssp SCHHHHHHHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHHHHHHCCC
T ss_conf 99899999999999843699
No 55
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=22.70 E-value=22 Score=14.60 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 456766468765
Q gi|254780891|r 119 LLNLFMVAHASL 130 (215)
Q Consensus 119 l~NLi~NA~~a~ 130 (215)
+..++..+.+.+
T Consensus 201 l~~I~~~~~~ll 212 (691)
T 3ibj_A 201 LQEIITEARNLS 212 (691)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999983
No 56
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=22.58 E-value=21 Score=14.66 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9967687999997745454227
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlrtP 29 (215)
.++.++..+++.|.++||+.-|
T Consensus 107 ~l~~~e~~alliAal~HDv~Hp 128 (353)
T 1zkl_A 107 SVTPWDILLSLIAAATHDLDHP 128 (353)
T ss_dssp TCCHHHHHHHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 0899999999999997326899
No 57
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
Probab=22.57 E-value=30 Score=13.72 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99967687999997745454227
Q gi|254780891|r 7 FNLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 7 ~~~~~~~laallas~IaHdlrtP 29 (215)
..++..+..+++.|.++||+.-|
T Consensus 98 ~~l~~~e~~alliAAl~HDv~Hp 120 (329)
T 3dyn_A 98 EKFSQTDILILMTAAICHDLDHP 120 (329)
T ss_dssp HHSCHHHHHHHHHHHHHTTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 56898999999999998048999
No 58
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=22.48 E-value=22 Score=14.56 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHH
Q ss_conf 99676879999977454542-------------2799999
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDII-------------SPIGAIH 34 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlr-------------tPL~~I~ 34 (215)
.++.++..+++.|.++||+. +||+.+.
T Consensus 124 ~l~~~e~~alliAAl~HDv~HpG~nN~fli~~~~~LA~lY 163 (359)
T 2r8q_A 124 LLTELECYVLLVTALVHDLDHMGVNNSFYLKTDSPLGILS 163 (359)
T ss_dssp GSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHH
T ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHH
T ss_conf 0898999999999997257999998189997188999874
No 59
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=22.35 E-value=23 Score=14.53 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 967687999997745454227
Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 9 ~~~~~laallas~IaHdlrtP 29 (215)
++..+..+++.|.++||+.-|
T Consensus 107 l~~~e~~alliAal~HDv~Hp 127 (345)
T 3itu_A 107 LEDIEIFALFISCMCHDLDHR 127 (345)
T ss_dssp SCHHHHHHHHHHHHHTTTTCC
T ss_pred CCHHHHHHHHHHHHHCCCCCC
T ss_conf 898999999999997256899
No 60
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3hc8_A* 3hdz_A* 1t9r_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* 3jwq_A* 3jwr_A*
Probab=22.04 E-value=23 Score=14.47 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9967687999997745454227
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlrtP 29 (215)
.++.++..+++.|.++||+.-|
T Consensus 125 ~ls~~E~~alliAal~HDv~Hp 146 (347)
T 1tbf_A 125 KLTDLEILALLIAALSHDLDHP 146 (347)
T ss_dssp GSCHHHHHHHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 3999999999999986157999
No 61
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=21.92 E-value=23 Score=14.44 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9967687999997745454227
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlrtP 29 (215)
.++..+..+++.|.++||+.-|
T Consensus 107 ~l~~~e~~alliAal~HD~~Hp 128 (377)
T 1f0j_A 107 VFTDLEILAAIFAAAIHDVDHP 128 (377)
T ss_dssp TSCHHHHHHHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 0898999999999998204899
No 62
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Probab=21.14 E-value=25 Score=14.28 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9967687999997745454227
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISP 29 (215)
Q Consensus 8 ~~~~~~laallas~IaHdlrtP 29 (215)
.++..+..+++.|.++||+.-|
T Consensus 99 ~l~~~e~~alliAal~HDv~Hp 120 (338)
T 3ecm_A 99 TLDPIDEVAALIAATIHDVDHP 120 (338)
T ss_dssp TSCHHHHHHHHHHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 1998999999999998147999
No 63
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=20.78 E-value=25 Score=14.20 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q ss_conf 9967687999997745454-------------227999999
Q gi|254780891|r 8 NLSSMDLVALLCSRICHDI-------------ISPIGAIHN 35 (215)
Q Consensus 8 ~~~~~~laallas~IaHdl-------------rtPL~~I~~ 35 (215)
.++.++..+++.|.++||+ ++||+.+.+
T Consensus 106 ~l~~~e~~alliAAl~HD~~HpG~~N~fli~t~~~LA~~Yn 146 (365)
T 1taz_A 106 CLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYN 146 (365)
T ss_dssp GSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHCC
T ss_conf 18999999999999981358999985588636877888649
Done!