HHSEARCH alignment of GI: 254780891 and SCOP domain: d1gkza2

Alignment
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.92  E-value=1.6e-25  Score=179.08  Aligned_cols=110  Identities=11%  Similarity=0.023  Sum_probs=97.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             00000100012344456766468765320--------0111112355772047999878984402458874054545789
Q gi|254780891|r  105 TGEKIDLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI  176 (215)
Q Consensus       105 ~~~~~~~~~~~~qvl~NLi~NA~~a~~~g--------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~  176 (215)
                      +.....++.++.|++.||+.||++|++.+        +.|.|++...++.+.|+|+|+|+||+ ++...++|+++++++.
T Consensus        44 ~~~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~-~e~~~~iF~~f~tt~~  122 (193)
T d1gkza2          44 AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIA-HKDLDRVMDYHFTTAE  122 (193)
T ss_dssp             TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCC-TTTTTTTTSTTCCCC-
T ss_pred             CCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCEEEEEEECCCCCCC-HHHHHHHCCCCEECCC
T ss_conf             703556699999999999999998441570440356643999997058889999955999879-9999975677614455


Q ss_pred             C--------------------------CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             9--------------------------87204999999999709879999877992699999419
Q gi|254780891|r  177 D--------------------------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       177 ~--------------------------g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
                      .                          |+||||++|+.+++.|||+|+++|.+|+||+|++.|||
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~i~k~ive~~gG~i~v~S~~g~Gt~f~l~L~~  187 (193)
T d1gkza2         123 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH  187 (193)
T ss_dssp             ------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf             55544456432355443343334554567867899999999879989999449985699999889


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK)
species: Rat (Rattus norvegicus) [TaxId: 10116]