HHSEARCH alignment of GI: 254780891 and SCOP domain: d1ixma_

Alignment
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=99.68  E-value=9.9e-17  Score=123.27  Aligned_cols=142  Identities=18%  Similarity=0.216  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             99774545422799999999999614430147898889999999986311001122320000000001344444322012
Q gi|254780891|r   18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD   97 (215)
Q Consensus        18 las~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (215)
                      +.+.++|||||||++|.+++++.+..    +..+.+.+................        ...  .............
T Consensus        12 ~l~~~~Hdl~npL~~I~g~l~L~~~~----~~~~~i~~i~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~   77 (179)
T d1ixma_          12 LLGHSRHDWMNKLQLIKGNLSLQKYD----RVFEMIEEMVIDAKHESKLSNLKT--------PHL--AFDFLTFNWKTHY   77 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHTTTC--------HHH--HHHHHHGGGSCCS
T ss_pred             HHHHHHHHHCCHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHCCCCCCCCCC--------CCC--CCCCCCHHHHCCC
T ss_conf             99985276468999999999804421----111578899986410100113332--------211--1212101333024


Q ss_pred             C--CCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf             2--332110000-001000123444567664687653200----111112355772047999878984402458874054
Q gi|254780891|r   98 K--RVQVSWTGE-KIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG  170 (215)
Q Consensus        98 ~--~~~~~~~~~-~~~~~~~~~qvl~NLi~NA~~a~~~gg----~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~  170 (215)
                      .  ......... ....+..+.|++.||+.||++|+...+    .|+|++...++++.|+|.|+|+||+ |+.+.++|.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~-~e~l~~if~~  156 (179)
T d1ixma_          78 MTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFAD-PSAFDDIRQN  156 (179)
T ss_dssp             SEEEEEEESSCCCCTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSC-GGGCC-----
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEECCCCCC-HHHHHHHHHH
T ss_conf             322233331210033323365789999999999975400111001021111456579999985899959-8999999985


Q ss_pred             CCCC
Q ss_conf             5457
Q gi|254780891|r  171 NVES  174 (215)
Q Consensus       171 ~~~~  174 (215)
                      ++..
T Consensus       157 ~y~~  160 (179)
T d1ixma_         157 GYED  160 (179)
T ss_dssp             ----
T ss_pred             CCCC
T ss_conf             4666


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Sporulation response regulatory protein Spo0B
superfamily: Sporulation response regulatory protein Spo0B
family: Sporulation response regulatory protein Spo0B
domain: Sporulation response regulatory protein Spo0B
species: Bacillus subtilis [TaxId: 1423]