Query gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 215 No_of_seqs 191 out of 11591 Neff 9.3 Searched_HMMs 13730 Date Wed Jun 1 10:44:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780891.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2c2aa2 d.122.1.3 (A:321-481) 99.9 2.4E-26 1.7E-30 184.4 10.9 133 82-215 12-158 (161) 2 d1gkza2 d.122.1.4 (A:186-378) 99.9 1.6E-25 1.2E-29 179.1 11.1 110 105-215 44-187 (193) 3 d1id0a_ d.122.1.3 (A:) Histidi 99.9 3.9E-25 2.9E-29 176.6 11.3 105 108-215 38-144 (146) 4 d1jm6a2 d.122.1.4 (A:1177-1366 99.9 5.9E-25 4.3E-29 175.5 12.2 107 108-215 54-178 (190) 5 d1ysra1 d.122.1.3 (A:299-446) 99.9 3.9E-25 2.8E-29 176.7 10.0 105 109-215 39-146 (148) 6 d1r62a_ d.122.1.3 (A:) Nitroge 99.9 1.1E-24 7.9E-29 173.8 9.5 128 85-214 12-153 (156) 7 d1bxda_ d.122.1.3 (A:) Histidi 99.9 1.1E-24 8.3E-29 173.7 7.8 104 108-214 41-148 (161) 8 d1ixma_ d.123.1.1 (A:) Sporula 99.7 9.9E-17 7.2E-21 123.3 10.2 142 18-174 12-160 (179) 9 d2hkja3 d.122.1.2 (A:10-228) T 99.5 6.7E-14 4.9E-18 105.3 11.4 99 112-211 20-132 (219) 10 d1th8a_ d.122.1.3 (A:) Anti-si 99.4 7.3E-13 5.3E-17 98.7 9.0 92 114-212 39-135 (139) 11 d1i58a_ d.122.1.3 (A:) Histidi 99.3 2.5E-14 1.8E-18 108.1 -2.9 92 117-214 91-187 (189) 12 d1y8oa2 d.122.1.4 (A:177-301) 98.9 8.7E-10 6.3E-14 79.2 5.2 60 108-168 58-125 (125) 13 d2c2aa1 a.30.2.1 (A:232-320) S 98.2 2.7E-06 2E-10 56.9 8.6 55 16-70 21-85 (89) 14 d1joya_ a.30.2.1 (A:) EnvZ his 98.2 7.4E-07 5.4E-11 60.5 5.3 49 16-66 13-61 (67) 15 d1h7sa2 d.122.1.2 (A:29-231) D 97.5 0.0002 1.4E-08 45.1 8.0 83 114-205 6-100 (203) 16 d1b63a2 d.122.1.2 (A:-2-216) D 97.2 0.0003 2.2E-08 44.0 5.6 59 114-176 24-82 (218) 17 d2gqpa1 d.122.1.1 (A:74-337) H 96.6 0.00063 4.6E-08 41.9 2.9 74 118-192 27-135 (227) 18 d1uyla_ d.122.1.1 (A:) HSP90 { 96.5 0.00052 3.8E-08 42.5 2.2 74 118-192 28-131 (208) 19 d2iwxa1 d.122.1.1 (A:2-214) HS 96.5 0.001 7.3E-08 40.7 3.5 75 117-192 28-132 (213) 20 d1ei1a2 d.122.1.2 (A:2-220) DN 96.3 0.014 9.9E-07 33.5 8.3 92 113-212 33-143 (219) 21 d1kija2 d.122.1.2 (A:9-220) DN 95.8 0.015 1.1E-06 33.2 6.8 85 113-204 25-128 (212) 22 d1pvga2 d.122.1.2 (A:7-245) DN 95.8 0.0075 5.4E-07 35.1 5.3 79 112-192 51-149 (239) 23 d1s14a_ d.122.1.2 (A:) Topoiso 95.5 0.044 3.2E-06 30.2 8.3 84 115-212 6-91 (168) 24 d1xn7a_ a.4.5.62 (A:) Hypothet 31.8 13 0.00093 14.6 2.6 25 18-42 18-42 (78) 25 d1jt6a2 a.121.1.1 (A:73-187) M 28.6 15 0.0011 14.2 6.9 51 11-64 4-55 (115) 26 d1tbfa_ a.211.1.2 (A:) cGMP-sp 26.0 10 0.00073 15.2 0.9 22 8-29 104-125 (326) 27 d1taza_ a.211.1.2 (A:) Catalyt 23.3 12 0.00089 14.7 0.9 28 8-35 102-142 (357) 28 d1y2ka1 a.211.1.2 (A:86-411) C 21.6 14 0.001 14.4 0.9 21 9-29 100-120 (326) 29 d3dy8a1 a.211.1.2 (A:182-505) 21.6 14 0.001 14.4 0.9 21 9-29 96-116 (324) 30 d1so2a_ a.211.1.2 (A:) cGMP-in 20.3 15 0.0011 14.1 0.9 30 7-36 146-188 (415) No 1 >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Probab=99.93 E-value=2.4e-26 Score=184.37 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=103.9 Q ss_pred CCCHHHHHHHHHHH-CCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCEEEEEEE Q ss_conf 00013444443220-122332110000----001000123444567664687653200---1111123557720479998 Q gi|254780891|r 82 GLGDIEQVIEDFIA-VDKRVQVSWTGE----KIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKI 153 (215) Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~~~~~~i~V~D 153 (215) .+.++...+..... +...+.++.+.+ ...++..+.|++.||+.||++|++.++ .|.+.+...++.+.|+|+| T Consensus 12 li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~~~~~~i~V~D 91 (161) T d2c2aa2 12 LVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVED 91 (161) T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEE T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEE T ss_conf 99999999999998779789998389998799988999999999999999996360797530467788559999999998 Q ss_pred CCCCCCCHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 78984402458874054545------789987204999999999709879999877992699999419 Q gi|254780891|r 154 NGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215) Q Consensus 154 ~G~Gi~~~e~~~~~~~~~~~------~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215) +|+||+ ++..+++|+||+. ++..|+|||||+|+.+++.|||+|+++|.+++|++|+++||+ T Consensus 92 ~G~GI~-~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt~f~i~lP~ 158 (161) T d2c2aa2 92 NGIGIP-DHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 158 (161) T ss_dssp CSSCCC-GGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC T ss_pred CCCCCC-HHHHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC T ss_conf 277779-8999886398487678887888934579999999999879989999649990699999985 No 2 >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=99.92 E-value=1.6e-25 Score=179.08 Aligned_cols=110 Identities=11% Similarity=0.023 Sum_probs=97.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 00000100012344456766468765320--------0111112355772047999878984402458874054545789 Q gi|254780891|r 105 TGEKIDLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 (215) Q Consensus 105 ~~~~~~~~~~~~qvl~NLi~NA~~a~~~g--------g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~ 176 (215) +.....++.++.|++.||+.||++|++.+ +.|.|++...++.+.|+|+|+|+||+ ++...++|+++++++. T Consensus 44 ~~~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~-~e~~~~iF~~f~tt~~ 122 (193) T d1gkza2 44 AARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIA-HKDLDRVMDYHFTTAE 122 (193) T ss_dssp TCCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCC-TTTTTTTTSTTCCCC- T ss_pred CCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCEEEEEEECCCCCCC-HHHHHHHCCCCEECCC T ss_conf 703556699999999999999998441570440356643999997058889999955999879-9999975677614455 Q ss_pred C--------------------------CCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 9--------------------------87204999999999709879999877992699999419 Q gi|254780891|r 177 D--------------------------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215) Q Consensus 177 ~--------------------------g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215) . |+||||++|+.+++.|||+|+++|.+|+||+|++.||| T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL~i~k~ive~~gG~i~v~S~~g~Gt~f~l~L~~ 187 (193) T d1gkza2 123 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH 187 (193) T ss_dssp ------------------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC T ss_conf 55544456432355443343334554567867899999999879989999449985699999889 No 3 >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Probab=99.92 E-value=3.9e-25 Score=176.62 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=93.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC--CCCCCCCHHHHH Q ss_conf 001000123444567664687653200111112355772047999878984402458874054545--789987204999 Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYY 185 (215) Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~--~~~~g~GlGl~~ 185 (215) ...++..+.|++.||+.||++|++.+ |+|++...++.+.|+|+|+|+||+ ++..+++|++|+. +...|+|||||+ T Consensus 38 ~~~d~~~l~~vl~NLl~NAik~~~~~--i~i~~~~~~~~~~i~V~D~G~Gi~-~~~~~~iF~~F~r~~~~~~G~GLGL~I 114 (146) T d1id0a_ 38 FVGEQNDFVEVMGNVLDNACKYCLEF--VEISARQTDEHLYIVVEDDGPGIP-LSKREVIFDRGQRVDTLRPGQGVGLAV 114 (146) T ss_dssp EESCHHHHHHHHHHHHHHHHHHCSSE--EEEEEEECSSCEEEEEEESSSCCC-GGGTTGGGSCCCCTTCCCTTCCSCHHH T ss_pred EEECHHHHHHHHHHHHHHHHHHHCCC--EEEEEEEECCEEEEEEEEECCCCC-HHHHHHHCCCCCCCCCCCCCEEHHHHH T ss_conf 99889999999999999999860098--899999609989999995079999-899999728963489998970379999 Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 999999709879999877992699999419 Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215) Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215) |+.+++.|||+|+++|.+++|++|++.||| T Consensus 115 ~k~iv~~h~G~i~~~s~~~~Gt~f~i~lP~ 144 (146) T d1id0a_ 115 AREITEQYEGKIVAGESMLGGARMEVIFGR 144 (146) T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEECC T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEC T ss_conf 999999859989999749984699999948 No 4 >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Probab=99.92 E-value=5.9e-25 Score=175.51 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=96.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCC-------CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC---- Q ss_conf 0010001234445676646876532001-------11112355772047999878984402458874054545789---- Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176 (215) Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~-------I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~---- 176 (215) ...++..+.|++.||+.||++|++.++. |.|++...++.+.|+|+|+|+||+ ++.+.++|++|++++. T Consensus 54 ~~~d~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~I~v~~~~~~~~~~i~V~D~G~GI~-~~~~~~iF~~f~~~~~~~~~ 132 (190) T d1jm6a2 54 MVYVPSHLYHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVP-LRKIERLFSYMYSTAPTPQP 132 (190) T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCCEEEEEEECSSEEEEEEEECSCCCC-GGGTTGGGCTTCCCSCCC-- T ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCC-HHHHHHHHCCCEECCCCCCC T ss_conf 99879999999999999999972526864432431899998177089999901699998-99999985756256776767 Q ss_pred -------CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf -------987204999999999709879999877992699999419 Q gi|254780891|r 177 -------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215) Q Consensus 177 -------~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215) .|+|||||+|+.+++.|||+|+++|.+++|++|+++||+ T Consensus 133 ~~~~~~~~G~GLGL~i~k~ive~hgG~I~v~s~~g~Gt~f~i~lP~ 178 (190) T d1jm6a2 133 GTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKA 178 (190) T ss_dssp -------CCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC T ss_conf 5544344888752999999999879989999549995499999858 No 5 >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=99.92 E-value=3.9e-25 Score=176.66 Aligned_cols=105 Identities=12% Similarity=-0.043 Sum_probs=94.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC---CCCCCCCHHHHH Q ss_conf 01000123444567664687653200111112355772047999878984402458874054545---789987204999 Q gi|254780891|r 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHDIQFYY 185 (215) Q Consensus 109 ~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~---~~~~g~GlGl~~ 185 (215) ..++..+.|++.||+.||++|++. +.|+|++...++.+.|+|+|+|+||+ ++...++|++|+. .+..|+|||||+ T Consensus 39 ~~d~~~l~~vl~NLl~NAiky~~~-~~I~i~~~~~~~~~~i~V~D~G~Gi~-~~~~~~ife~f~r~~~~~~~G~GLGL~i 116 (148) T d1ysra1 39 VGLPAGLRLAVDNAIANAVKHGGA-TLVQLSAVSSRAGVEIAIDDNGSGVP-EGERQVVFERFSRGSTASHSGSGLGLAL 116 (148) T ss_dssp EECHHHHHHHHHHHHHHHHHTTCC-SEEEEEEEEETTEEEEEEEESSSCCC-GGGHHHHHTSCC-----------CCCHH T ss_pred EECHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCEEEEEEEECCCCCC-HHHHHHHCCCCCCCCCCCCCCCCHHHHH T ss_conf 988999999999999998886699-48999997049999999997487989-7999975576344799998971579999 Q ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEEC Q ss_conf 999999709879999877992699999419 Q gi|254780891|r 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215) Q Consensus 186 ~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215) |+.+++.|||+|+++|.+++|++|++.||. T Consensus 117 ~~~iv~~hgG~i~~~s~~~~Gt~f~i~lP~ 146 (148) T d1ysra1 117 VAQQAQLHGGTASLENSPLGGARLVLRLPG 146 (148) T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEEEC T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEEC T ss_conf 999999849989999769983799999983 No 6 >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=99.91 E-value=1.1e-24 Score=173.82 Aligned_cols=128 Identities=12% Similarity=0.071 Sum_probs=100.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHCC-----------CCCCCCCCCCCEEEE Q ss_conf 13444443220122332110000---0010001234445676646876532001-----------111123557720479 Q gi|254780891|r 85 DIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGK-----------VTISVQDSKNENIFS 150 (215) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~gg~-----------I~i~~~~~~~~~~i~ 150 (215) ++..++......+.++..+.+.+ ...++..+.|+|.||+.||++|++.++. +.+.....+..+.|. T Consensus 12 ~v~~l~~~~~~~~i~i~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (156) T d1r62a_ 12 RVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARID 91 (156) T ss_dssp HHHHHHTTTCCTTEEEEEECCTTCCCEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEE T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCEEEEE T ss_conf 99999998766998999984999977998899999999999999998634389722200011320210012578558999 Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE Q ss_conf 9987898440245887405454578998720499999999970987999987799269999941 Q gi|254780891|r 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215) Q Consensus 151 V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215) |+|+|+||+ ++..+++|+||++++..|+|||||+|+.+++.|||+|+++|.++ |++|++.|| T Consensus 92 v~D~G~Gi~-~~~~~~iF~pf~s~k~~G~GLGL~i~~~iv~~hgG~i~v~s~~g-Gt~f~i~LP 153 (156) T d1r62a_ 92 VEDNGPGIP-PHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP 153 (156) T ss_dssp EEEECTTC---------------------CHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEE T ss_pred EECCCCCCC-HHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECC-CEEEEEEEE T ss_conf 813789989-89997516563023789998438999999998799899999599-589999999 No 7 >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Probab=99.90 E-value=1.1e-24 Score=173.70 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=92.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCC----CCCCCCHHH Q ss_conf 0010001234445676646876532001111123557720479998789844024588740545457----899872049 Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES----TIDSHDIQF 183 (215) Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~----~~~g~GlGl 183 (215) ...++..+.|++.||+.||++|+ ++.|.|++..+++.+.|+|+|+|+||+ ++..+++|++|+.. ...|+|||| T Consensus 41 v~~d~~~l~~vl~NLi~NAik~~--~~~i~i~~~~~~~~~~i~V~D~G~GI~-~e~~~~iF~~F~r~~~~~~~~g~GLGL 117 (161) T d1bxda_ 41 VKMHPLSIKRAVANMVVNAARYG--NGWIKVSSGTEPNRAWFQVEDDGPGIA-PEQRKHLFQPFVRGDSARTISGTGLGL 117 (161) T ss_dssp EEECHHHHHHHHHHHHHHHHTTC--CSCEEEEEEEETTEEEEEEEEESSCSC-TTGGGCSSCCCCCCSCCCCCCCCSCCC T ss_pred EEECHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECCEEEEEEEECCCCCC-HHHHHHHHCCCEECCCCCCCCCCCCHH T ss_conf 99889999999999999999857--983999999869999999998587889-999998747844887888589877459 Q ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEEEEE Q ss_conf 9999999970987999987799269999941 Q gi|254780891|r 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215) Q Consensus 184 ~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215) |+|+.|++.|||+|++++.+++|++|++.|| T Consensus 118 ~ivk~iv~~hgG~i~v~s~~~~Gt~f~v~lP 148 (161) T d1bxda_ 118 AIVQRIVDNHNGMLELGTSERGGLSIRAWLP 148 (161) T ss_dssp CTTHHHHHHHTSEEEEEEETTTEEEEEEEEC T ss_pred HHHHHHHHHCCCEEEEEECCCCCEEEEEEEE T ss_conf 9999999987998999972999189999998 No 8 >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Probab=99.68 E-value=9.9e-17 Score=123.27 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=86.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 99774545422799999999999614430147898889999999986311001122320000000001344444322012 Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97 (215) Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (215) +.+.++|||||||++|.+++++.+.. +..+.+.+................ ... ............. T Consensus 12 ~l~~~~Hdl~npL~~I~g~l~L~~~~----~~~~~i~~i~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~ 77 (179) T d1ixma_ 12 LLGHSRHDWMNKLQLIKGNLSLQKYD----RVFEMIEEMVIDAKHESKLSNLKT--------PHL--AFDFLTFNWKTHY 77 (179) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHTTTC--------HHH--HHHHHHGGGSCCS T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCC----CCHHHHHHHHHHHHCCCCCCCCCC--------CCC--CCCCCCHHHHCCC T ss_conf 99985276468999999999804421----111578899986410100113332--------211--1212101333024 Q ss_pred C--CCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC Q ss_conf 2--332110000-001000123444567664687653200----111112355772047999878984402458874054 Q gi|254780891|r 98 K--RVQVSWTGE-KIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170 (215) Q Consensus 98 ~--~~~~~~~~~-~~~~~~~~~qvl~NLi~NA~~a~~~gg----~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~ 170 (215) . ......... ....+..+.|++.||+.||++|+...+ .|+|++...++++.|+|.|+|+||+ |+.+.++|.+ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~qvl~Nll~NAi~~~~~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~-~e~l~~if~~ 156 (179) T d1ixma_ 78 MTLEYEVLGEIKDLSAYDQKLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFAD-PSAFDDIRQN 156 (179) T ss_dssp SEEEEEEESSCCCCTTTHHHHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSC-GGGCC----- T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEECCCCCC-HHHHHHHHHH T ss_conf 322233331210033323365789999999999975400111001021111456579999985899959-8999999985 Q ss_pred CCCC Q ss_conf 5457 Q gi|254780891|r 171 NVES 174 (215) Q Consensus 171 ~~~~ 174 (215) ++.. T Consensus 157 ~y~~ 160 (179) T d1ixma_ 157 GYED 160 (179) T ss_dssp ---- T ss_pred CCCC T ss_conf 4666 No 9 >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Probab=99.52 E-value=6.7e-14 Score=105.29 Aligned_cols=99 Identities=11% Similarity=0.072 Sum_probs=77.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCC---CCCCC--C-CCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC-------CCC Q ss_conf 001234445676646876532001---11112--3-5577204799987898440245887405454578-------998 Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRGGK---VTISV--Q-DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-------IDS 178 (215) Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~gg~---I~i~~--~-~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~-------~~g 178 (215) ...+.|++.||+.||++|+..+|. |.+.+ . ...+.+.|.|+|+|+||+ ++.+..+|.++++.+ .++ T Consensus 20 ~~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~~~~~~~i~V~DnG~Gi~-~~~~~~~f~~~~~s~~~~~~~~~G~ 98 (219) T d2hkja3 20 ARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIP-PQEVPNAFGRVLYSSKYVNRQTRGM 98 (219) T ss_dssp HHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEEECSCCCC-GGGHHHHHHCCCSSCCCCCSCCSCS T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCC-HHHHHHHCCCEEECCCCCCCCCCCC T ss_conf 789999999999999998871898523999999863899899999985898888-7898741032176023465326676 Q ss_pred CCHHHHHHHHHHHHCCCE-EEEEEECCCCEEEEE Q ss_conf 720499999999970987-999987799269999 Q gi|254780891|r 179 HDIQFYYVILLAHENKIR-LLPEIIDDHNVVLSA 211 (215) Q Consensus 179 ~GlGl~~~~~i~~~~gG~-i~v~~~~~~g~~f~~ 211 (215) +|+||++++.+++.|+|+ +.|++..++|.++.. T Consensus 99 ~GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~~~ 132 (219) T d2hkja3 99 YGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYT 132 (219) T ss_dssp CTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEE T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEE T ss_conf 1889999999999839927999988148984999 No 10 >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Probab=99.39 E-value=7.3e-13 Score=98.69 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=76.1 Q ss_pred HHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC--CCCCCHHHHHHHH Q ss_conf 12344456766468765---320011111235577204799987898440245887405454578--9987204999999 Q gi|254780891|r 114 ERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVIL 188 (215) Q Consensus 114 ~~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~--~~g~GlGl~~~~~ 188 (215) ++..++.+++.||++|. +.++.|.|++...++.+.|.|+|+|+||+ + ..+.|.|+++.. ..++|+||++++. T Consensus 39 di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~~l~i~i~D~G~gi~-~--~~~~~~~~~~~~~~~~~~GlGL~iv~~ 115 (139) T d1th8a_ 39 EIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP-D--IEEARQPLFTTKPELERSGMGFTIMEN 115 (139) T ss_dssp HHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS-C--HHHHTCCC-------CCCSCHHHHHHH T ss_pred HHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEECCEEEEEECCCCCCCC-C--CCCCCCCCCEECCCCCCCHHHHHHHHH T ss_conf 9999998864436541237899957999999806899999823666624-5--123356652113568975378999998 Q ss_pred HHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 999709879999877992699999 Q gi|254780891|r 189 LAHENKIRLLPEIIDDHNVVLSAL 212 (215) Q Consensus 189 i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215) + .+++.+++.+++|++|+++ T Consensus 116 l----~d~i~i~s~~~~Gt~v~i~ 135 (139) T d1th8a_ 116 F----MDEVIVESEVNKGTTVYLK 135 (139) T ss_dssp H----SSEEEEEEETTTEEEEEEE T ss_pred H----CCEEEEEECCCCCEEEEEE T ss_conf 4----9889999749993899999 No 11 >d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Probab=99.31 E-value=2.5e-14 Score=108.06 Aligned_cols=92 Identities=8% Similarity=-0.019 Sum_probs=62.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCC-----CCCCCCCHHHHHHHHHHH Q ss_conf 444567664687653200111112355772047999878984402458874054545-----789987204999999999 Q gi|254780891|r 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAH 191 (215) Q Consensus 117 qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~-----~~~~g~GlGl~~~~~i~~ 191 (215) +++.|+..|+..+.+....... .......+.|.+.+. .++...++|++++. ++.+|+|||||+|+.+++ T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~G~GLGLai~k~ive 164 (189) T d1i58a_ 91 NVVIEVEDDGRGIDKEKIIRKA-----IEKGLIDESKAATLS-DQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVE 164 (189) T ss_dssp EEEEEEEECSSCCCHHHHHHHH-----HHTTSSCHHHHTTCC-HHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHH T ss_pred EEEEEECCCCCCCCHHHHHCEE-----CCCEEEEECCCCCCH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 5999974784243601200000-----111023201455401-5566654401010003335667767428999999999 Q ss_pred HCCCEEEEEEECCCCEEEEEEEE Q ss_conf 70987999987799269999941 Q gi|254780891|r 192 ENKIRLLPEIIDDHNVVLSALLE 214 (215) Q Consensus 192 ~~gG~i~v~~~~~~g~~f~~~l~ 214 (215) .|||+|+++|.+|+||+|+++|| T Consensus 165 ~hgG~I~v~S~~g~GT~f~i~lP 187 (189) T d1i58a_ 165 SLNGSISIESEKDKGTKVTIRLP 187 (189) T ss_dssp HTTCEEEEEEETTTEEEEEEEEE T ss_pred HCCCEEEEEECCCCCEEEEEEEE T ss_conf 87998999953999779999995 No 12 >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Probab=98.89 E-value=8.7e-10 Score=79.17 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=51.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf 0010001234445676646876532--------001111123557720479998789844024588740 Q gi|254780891|r 108 KIDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168 (215) Q Consensus 108 ~~~~~~~~~qvl~NLi~NA~~a~~~--------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~ 168 (215) ....+.++.|++.||+.||++|++. ++.|.++....++.+.|+|+|+|+||+ ++...++| T Consensus 58 v~~d~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~-~e~~~~IF 125 (125) T d1y8oa2 58 VVYVPSHLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVP-LRKIDRLF 125 (125) T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCC-HHHHGGGG T ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCC-HHHHCCCC T ss_conf 862789999999999999998634232235777516888851489889999999288829-89980349 No 13 >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Probab=98.25 E-value=2.7e-06 Score=56.95 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=37.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--C----CCHHHHHHHHHHHHHHHHHH----HHHHCC Q ss_conf 9999774545422799999999999614--4----30147898889999999986----311001 Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEV--G----IEDEVMQLIRLSSMSAIIRL----KFMRLA 70 (215) Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~--~----~~~~~~~~i~~~~~~~~~l~----~~~r~~ 70 (215) .-+.+.+||||||||++|.+++++|.+. + ...++++.+...+.++..++ ++.+.. T Consensus 21 ~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li~~lLd~srle 85 (89) T d2c2aa1 21 TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLE 85 (89) T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999966999988999999999987400101689999877778999999999999999999987 No 14 >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Probab=98.23 E-value=7.4e-07 Score=60.54 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=36.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999977454542279999999999961443014789888999999998631 Q gi|254780891|r 16 ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66 (215) Q Consensus 16 allas~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~~~ 66 (215) ..+.+.|||||||||++|+++++++.++ .++..+.+.+.+.++..+++- T Consensus 13 ~~f~~~vsHeLRTPLt~i~~~~e~l~~~--~~~~~~~i~~~~~rm~~li~d 61 (67) T d1joya_ 13 TLLMAGVSHDLRTPLTRIRLATEMMSEQ--DGYLAESINKDIEECNAIIEQ 61 (67) T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHH T ss_conf 9999984488889999999998872333--699999999999999999999 No 15 >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Probab=97.55 E-value=0.0002 Score=45.14 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=53.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC------------CCCCH Q ss_conf 123444567664687653200111112355772047999878984402458874054545789------------98720 Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------------DSHDI 181 (215) Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~------------~g~Gl 181 (215) .+.+++.-|+.||++|- ...|.|.+.. .+.-.|.|+|+|.||+ ++++...+....+.+. +..|. T Consensus 6 ~~~~~v~ELi~NsiDA~--At~I~i~i~~-~g~~~i~V~DnG~Gi~-~~dl~~~~~~~~tsk~~~~~~~~~~~t~GfrGe 81 (203) T d1h7sa2 6 SLSTAVKELVENSLDAG--ATNIDLKLKD-YGVDLIEVSDNGCGVE-EENFEGLTLKHHTSKIQEFADLTQVETFGFRGE 81 (203) T ss_dssp CHHHHHHHHHHHHHHTT--CSEEEEEEEG-GGTSEEEEEECSCCCC-GGGSGGGGC----------CCTTCSEEESSSSS T ss_pred CHHHHHHHHHHHHHCCC--CCEEEEEEEC-CCEEEEEEEECCCCCC-HHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCH T ss_conf 57999999997787489--9889999986-9888999952871138-788532333132022345444333210276605 Q ss_pred HHHHHHHHHHHCCCEEEEEEECCC Q ss_conf 499999999970987999987799 Q gi|254780891|r 182 QFYYVILLAHENKIRLLPEIIDDH 205 (215) Q Consensus 182 Gl~~~~~i~~~~gG~i~v~~~~~~ 205 (215) +|+-...+ +++.+.+...+ T Consensus 82 aL~si~~~-----s~~~i~s~~~~ 100 (203) T d1h7sa2 82 ALSSLCAL-----SDVTISTCHAS 100 (203) T ss_dssp HHHHHHHH-----SEEEEEEECTT T ss_pred HHHHHHHC-----CCEEEEEECCC T ss_conf 56665405-----61478733389 No 16 >d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Probab=97.21 E-value=0.0003 Score=44.02 Aligned_cols=59 Identities=12% Similarity=0.218 Sum_probs=44.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC Q ss_conf 123444567664687653200111112355772047999878984402458874054545789 Q gi|254780891|r 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176 (215) Q Consensus 114 ~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~ 176 (215) ...+++--|+.||++|.. ..|.|.+.. ++.-.|.|.|+|.||+ ++++.-.+..+.+.+. T Consensus 24 ~~~~~vkELveNsiDA~A--t~I~V~i~~-~g~~~i~V~DnG~Gi~-~~d~~~~~~r~~TSKi 82 (218) T d1b63a2 24 RPASVVKELVENSLDAGA--TRIDIDIER-GGAKLIRIRDNGCGIK-KDELALALARHATSKI 82 (218) T ss_dssp SHHHHHHHHHHHHHHTTC--SEEEEEEEG-GGTSEEEEEECSCCCC-GGGHHHHHSTTCCSSC T ss_pred CHHHHHHHHHHHHHCCCC--CEEEEEEEC-CCCCEEEEEECCCCCC-HHHHHHHHHCCCCCCC T ss_conf 588999999864352799--889999985-9810899950777758-8888766754515566 No 17 >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Probab=96.56 E-value=0.00063 Score=41.93 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC----C---CCC-- Q ss_conf 445676646876532--------------00111112355772047999878984402458874054----5---457-- Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG----N---VES-- 174 (215) Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~----~---~~~-- 174 (215) .++-||+||.+|+.. .....|....+.+.-.+.|+|+|.||. .+.+.+.+.. . +.. T Consensus 27 flRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~i~i~~d~~~~~l~i~DnGiGMt-~~e~~~~lgtIa~Sgt~~f~~~~ 105 (227) T d2gqpa1 27 FLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMT-REELVKNLGTIAKSGTSEFLNKM 105 (227) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHHHHHCC------------ T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHHHCCHHHHHHHH T ss_conf 08888866999999999986549510124521332102577776899984575553-89999988877612618888752 Q ss_pred ---C---------CCCCCHHHHHHHHHHHH Q ss_conf ---8---------99872049999999997 Q gi|254780891|r 175 ---T---------IDSHDIQFYYVILLAHE 192 (215) Q Consensus 175 ---~---------~~g~GlGl~~~~~i~~~ 192 (215) + .+-.|+|+|-|..++.. T Consensus 106 ~~~~~~~~~~~~~IGqFGvGfyS~FmVad~ 135 (227) T d2gqpa1 106 TEAQEDGQSTSELIGQFGVGFYSAFLVADK 135 (227) T ss_dssp ---------CHHHHHHTTCGGGGGGGTEEE T ss_pred HHCCCCCCCCHHHHHHCCCCEEEEEEEEEE T ss_conf 201244343022333227541688864205 No 18 >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Probab=96.50 E-value=0.00052 Score=42.46 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=47.3 Q ss_pred HHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHC-------------- Q ss_conf 445676646876532--------------0011111235577204799987898440245887405-------------- Q gi|254780891|r 118 ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-------------- 169 (215) Q Consensus 118 vl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~-------------- 169 (215) .++-||+||.+|+.. +....|.+..+.+.-.+.|+|+|.||. .+.+.+.+. T Consensus 28 flRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~l~I~DnGiGMt-~~el~~~LgtIa~Sg~~~f~~~~ 106 (208) T d1uyla_ 28 FLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT-KADLINNLGTIAKSGTKAFMEAL 106 (208) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC-HHHHHTGGGSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEECCCCCEEEEECCCCCCC-HHHHHHHCCCCCCCCHHHHHHHH T ss_conf 68989852999999888886279202147864222775237764899972895454-99998651211323348899864 Q ss_pred -C-CCCCCCCCCCHHHHHHHHHHHH Q ss_conf -4-5457899872049999999997 Q gi|254780891|r 170 -G-NVESTIDSHDIQFYYVILLAHE 192 (215) Q Consensus 170 -~-~~~~~~~g~GlGl~~~~~i~~~ 192 (215) . ....-.+-.|+|+|-|..++.. T Consensus 107 ~~~~~~~~IGqFGVGFyS~FmVad~ 131 (208) T d1uyla_ 107 QAGADISMIGQFGVGFYSAYLVAEK 131 (208) T ss_dssp HTTCCGGGGGGGTCGGGGGGGTEEE T ss_pred HHCCCHHHHHHCCCCEEEEEECCCC T ss_conf 4012100220204425776522681 No 19 >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=96.48 E-value=0.001 Score=40.65 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHHHHHH--------------HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC-CCC-------- Q ss_conf 4445676646876532--------------00111112355772047999878984402458874054-545-------- Q gi|254780891|r 117 KILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVE-------- 173 (215) Q Consensus 117 qvl~NLi~NA~~a~~~--------------gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~-~~~-------- 173 (215) -.+.-|++||.+|... ...+.|.+..+.+.-.|.|+|+|.||.-++ +.+.+.. ..+ T Consensus 28 iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~l~i~DnGiGMt~~~-~~~~l~~ia~S~~~~~~~~ 106 (213) T d2iwxa1 28 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAE-LINNLGTIAKSGTKAFMEA 106 (213) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEGGGTEEEEEECSSCCCHHH-HHHHHTTCCCSTHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHH-HHHHHHHHHCCCCHHHHHH T ss_conf 778999870999999988764259300257754221223455665258842783035889-9888764400010677754 Q ss_pred -------CCCCCCCHHHHHHHHHHHH Q ss_conf -------7899872049999999997 Q gi|254780891|r 174 -------STIDSHDIQFYYVILLAHE 192 (215) Q Consensus 174 -------~~~~g~GlGl~~~~~i~~~ 192 (215) .-.+-.|+|+|-|..++.. T Consensus 107 ~~~~~~~~~IGqFGIGfyS~Fmvad~ 132 (213) T d2iwxa1 107 LSAGADVSMIGQFGVGFYSLFLVADR 132 (213) T ss_dssp HHHTCCGGGGGGGTCGGGGGGGTEEE T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCCC T ss_conf 10000133411146011001022361 No 20 >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Probab=96.27 E-value=0.014 Score=33.47 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC-CC-----C Q ss_conf 012344456766468765320--0111112355772047999878984402----------45-8874054-54-----5 Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG-NV-----E 173 (215) Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~-~~-----~ 173 (215) ..+..++..+|.||++..-.+ ..|.|.+..++ .|+|+|+|.||+.. +. |..+..+ .+ . T Consensus 33 ~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~dg---sIsV~ddGrGIPv~~h~~~~~~~~e~if~~l~tg~~fd~~~~~ 109 (219) T d1ei1a2 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYK 109 (219) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS---CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSSSSSCS T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC---EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCE T ss_conf 5203436767643556640797662047892898---1999978755223316766986564363424301588887632 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEE Q ss_conf 789987204999999999709879999877992699999 Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212 (215) Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215) ...+.+|+|+.++--+.+ .+.|+...+ |-.++.. T Consensus 110 ~sgG~nGvG~~~~NalS~----~f~v~~~r~-g~~y~q~ 143 (219) T d1ei1a2 110 VSGGLHGVGVSVVNALSQ----KLELVIQRE-GKIHRQI 143 (219) T ss_dssp SCSCCSSCHHHHHHHTEE----EEEEEEEET-TEEEEEE T ss_pred EECCCCCCCEEEEEEEEE----EEEEEEEEC-CEEEEEE T ss_conf 476756646247787613----899999989-9999999 No 21 >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Probab=95.83 E-value=0.015 Score=33.23 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=52.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEECCCCCCCH----------HH-HHHHHCC------CCC Q ss_conf 012344456766468765320--0111112355772047999878984402----------45-8874054------545 Q gi|254780891|r 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFP----------EK-FTQIVDG------NVE 173 (215) Q Consensus 113 ~~~~qvl~NLi~NA~~a~~~g--g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e~-~~~~~~~------~~~ 173 (215) .-+.+++.-++.||++..-.+ ..|.+.+..++ .|+|+|+|.||+.+ |. |..+..+ .+. T Consensus 25 ~Gl~~l~~Eil~Na~De~~~~~~~~i~v~~~~dg---~i~V~ddG~GIpv~~h~~~~~~~~e~if~~l~~~~~~d~~~~~ 101 (212) T d1kija2 25 EGYHHLFKEILDNAVDEALAGYATEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYK 101 (212) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEESGGGGSSCC T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC---CEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCE T ss_conf 5156554644433410002037864888990898---0999988843120111346960479999887034566677733 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEECC Q ss_conf 7899872049999999997098799998779 Q gi|254780891|r 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204 (215) Q Consensus 174 ~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~ 204 (215) .....+|+|+.++--+.+ .+.|+...+ T Consensus 102 ~sgG~hGvGa~vvNalS~----~~~v~v~r~ 128 (212) T d1kija2 102 VSGGLHGVGASVVNALSE----WTVVEVFRE 128 (212) T ss_dssp CCSCSSTTSHHHHHHTEE----EEEEEEEET T ss_pred ECCCCCCCCCEEEEEECC----CEEEEEEEE T ss_conf 237776534347899636----129999991 No 22 >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=95.82 E-value=0.0075 Score=35.12 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=48.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCEEEEEEECCCCCCCH----------H-HHHHHHCC-CCC--- Q ss_conf 0012344456766468765320---0111112355772047999878984402----------4-58874054-545--- Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFP----------E-KFTQIVDG-NVE--- 173 (215) Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~g---g~I~i~~~~~~~~~~i~V~D~G~Gi~~~----------e-~~~~~~~~-~~~--- 173 (215) ..-+..++.-+|.||++..-.+ ..|.|.+.. +.-.|+|.|+|.||+.+ | .|..+..+ .+. T Consensus 51 ~~gl~ki~dEil~Na~D~~~r~~~~~~I~v~i~~--~~~si~V~d~GrGIPv~~h~~~~~~~~e~ift~l~ag~nfd~~~ 128 (239) T d1pvga2 51 VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA--EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 128 (239) T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET--TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS T ss_pred CCCCEEECCEEEECCCCHHHHCCCCCEEEEEEEC--CCCEEEEEECCCCEEEEECCCCCCCHHHEEEEEECCCCCCCCCC T ss_conf 1020000441123202112312456569999817--99989998567541440024553110030047621354334554 Q ss_pred --CCCCCCCHHHHHHHHHHHH Q ss_conf --7899872049999999997 Q gi|254780891|r 174 --STIDSHDIQFYYVILLAHE 192 (215) Q Consensus 174 --~~~~g~GlGl~~~~~i~~~ 192 (215) ...+.+|+|+.++-.+.+. T Consensus 129 ~k~sgGlnGvG~~vvNalS~~ 149 (239) T d1pvga2 129 KKVTGGRNGYGAKLCNIFSTE 149 (239) T ss_dssp CCCCSCCSSCHHHHHHHTEEE T ss_pred CEEECCEECCCEEEHHHHHHH T ss_conf 222077023010100022476 No 23 >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Probab=95.53 E-value=0.044 Score=30.21 Aligned_cols=84 Identities=7% Similarity=0.025 Sum_probs=56.4 Q ss_pred HHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 234445676646876532--001111123557720479998789844024588740545457899872049999999997 Q gi|254780891|r 115 RAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192 (215) Q Consensus 115 ~~qvl~NLi~NA~~a~~~--gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~ 192 (215) +.-++.-++.||++=.-. +..|.|.+..++. ++|+|+|.||+.+ ..+ +.+.+++.+.++...+.. T Consensus 6 lhHlv~EivDNsiDEa~aG~~~~I~V~l~~D~s---i~V~D~GRGIPvd--------~h~--~~~~~~~e~v~t~SVVNA 72 (168) T d1s14a_ 6 PNHLGQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVD--------IHP--EEGVPAVELILCISVVNA 72 (168) T ss_dssp THHHHHHHHHHHHHHHHTTSCSEEEEEECTTSC---EEEEECSSCCCCS--------BCT--TTCSBHHHHHHHTSHHHH T ss_pred CCEEEEEEEECHHHHHHCCCCCEEEEEEECCCE---EEEEEEECCCCEE--------EEC--CCCCCHHHCCCCEEEEEE T ss_conf 751886552068989971899789999968984---9999984565356--------613--479724542575059262 Q ss_pred CCCEEEEEEECCCCEEEEEE Q ss_conf 09879999877992699999 Q gi|254780891|r 193 NKIRLLPEIIDDHNVVLSAL 212 (215) Q Consensus 193 ~gG~i~v~~~~~~g~~f~~~ 212 (215) ..-.+.++...++ -+.... T Consensus 73 LS~~l~v~v~RdG-k~~~q~ 91 (168) T d1s14a_ 73 LSKRVEVNVRRDG-QVYNIA 91 (168) T ss_dssp HEEEEEEEEEETT-EEEEEE T ss_pred CCCEEEEEEEECC-EEEEEE T ss_conf 6675999999999-999999 No 24 >d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]} Probab=31.81 E-value=13 Score=14.56 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9977454542279999999999961 Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSLELLDE 42 (215) Q Consensus 18 las~IaHdlrtPL~~I~~~~elL~~ 42 (215) =+.-+||.|.+|+--|...++-|.. T Consensus 18 da~qlS~qL~~P~Plv~AMLerL~a 42 (78) T d1xn7a_ 18 EAAQISQTLNTPQPMINAMLQQLES 42 (78) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 3999988874884799999999997 No 25 >d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=28.56 E-value=15 Score=14.21 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=30.7 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 7687999997-74545422799999999999614430147898889999999986 Q gi|254780891|r 11 SMDLVALLCS-RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64 (215) Q Consensus 11 ~~~laallas-~IaHdlrtPL~~I~~~~elL~~~~~~~~~~~~i~~~~~~~~~l~ 64 (215) ..||.++ |- .+.||+..||... ..++.......++..+.|.+..++-..+. T Consensus 4 ~~klyg~-a~~~~~~~~~~Pl~~a--~~EF~~~~~~~~e~~~~i~~lr~~y~~~~ 55 (115) T d1jt6a2 4 REKFYLY-NELSLTTEYYYPLQNA--IIEFYTEYYKTNSINEKMNKLENKYIDAY 55 (115) T ss_dssp HHHHHHH-HHHHHHHHHTCTTHHH--HHHHHTTTTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 8999819-9999999740779999--99999833059999999999999999999 No 26 >d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Probab=26.04 E-value=10 Score=15.25 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9967687999997745454227 Q gi|254780891|r 8 NLSSMDLVALLCSRICHDIISP 29 (215) Q Consensus 8 ~~~~~~laallas~IaHdlrtP 29 (215) .++..+..+++.|.++||+.-| T Consensus 104 ~l~~~e~~alliAal~HDv~Hp 125 (326) T d1tbfa_ 104 KLTDLEILALLIAALSHDLDHP 125 (326) T ss_dssp GSCHHHHHHHHHHHHHTTTTCC T ss_pred CCCHHHHHHHHHHHHHHCCCCC T ss_conf 6988999999999887516899 No 27 >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Probab=23.26 E-value=12 Score=14.71 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHH Q ss_conf 99676879999977454542-------------27999999 Q gi|254780891|r 8 NLSSMDLVALLCSRICHDII-------------SPIGAIHN 35 (215) Q Consensus 8 ~~~~~~laallas~IaHdlr-------------tPL~~I~~ 35 (215) .++.++..+++.|.++||+. +||+.+.+ T Consensus 102 ~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYn 142 (357) T d1taza_ 102 CLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYN 142 (357) T ss_dssp GSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCC T ss_conf 38999999999999988248899635799863887888639 No 28 >d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Probab=21.64 E-value=14 Score=14.38 Aligned_cols=21 Identities=19% Similarity=0.536 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 967687999997745454227 Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISP 29 (215) Q Consensus 9 ~~~~~laallas~IaHdlrtP 29 (215) ++..+..+++.|.++||+.-| T Consensus 100 l~~~e~~alliAal~HDv~Hp 120 (326) T d1y2ka1 100 FTDLEILAAIFASAIHDVDHP 120 (326) T ss_dssp SCHHHHHHHHHHHHHTTTTCC T ss_pred CCHHHHHHHHHHHHHHCCCCC T ss_conf 799999999999998645878 No 29 >d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Probab=21.63 E-value=14 Score=14.38 Aligned_cols=21 Identities=38% Similarity=0.820 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 967687999997745454227 Q gi|254780891|r 9 LSSMDLVALLCSRICHDIISP 29 (215) Q Consensus 9 ~~~~~laallas~IaHdlrtP 29 (215) ++..+..+++.|.++||+.-| T Consensus 96 l~~~e~~alliAal~HD~~Hp 116 (324) T d3dy8a1 96 FSQTDILILMTAAICHDLDHP 116 (324) T ss_dssp SCHHHHHHHHHHHHHTTTTCC T ss_pred CCHHHHHHHHHHHHHHCCCCC T ss_conf 473999999999999726899 No 30 >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Probab=20.32 E-value=15 Score=14.10 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH Q ss_conf 999676879999977454542-------------279999999 Q gi|254780891|r 7 FNLSSMDLVALLCSRICHDII-------------SPIGAIHNS 36 (215) Q Consensus 7 ~~~~~~~laallas~IaHdlr-------------tPL~~I~~~ 36 (215) ..++.+++.+++.|.++||+- +||+.+.+. T Consensus 146 ~~l~~lE~~alliAAl~HDvdHpG~nN~Flv~t~~pLA~lYnd 188 (415) T d1so2a_ 146 SNIPALELMALYVAAAMHDYDHPGRTNAFLVATNAPQAVLYND 188 (415) T ss_dssp GTSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHTTT T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHCC T ss_conf 4089999999999999722699996688998718878998589 Done!