BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780891|ref|YP_003065304.1| hypothetical protein
CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040568|gb|ACT57364.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 215

 Score =  434 bits (1115), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA
Sbjct: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL
Sbjct: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD
Sbjct: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK
Sbjct: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215


>gi|315122692|ref|YP_004063181.1| hypothetical protein CKC_04720 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496094|gb|ADR52693.1| hypothetical protein CKC_04720 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 215

 Score =  292 bits (748), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 143/215 (66%), Positives = 174/215 (80%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  N+ F+LSSMDL ALLCSRICHDIISPIGAIHNSLELLDE GIEDE +QLIRLSSM+A
Sbjct: 1   MVNNLSFSLSSMDLSALLCSRICHDIISPIGAIHNSLELLDEEGIEDEAIQLIRLSSMNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           I RLKF+RLAF YTGSV SL+GL +I+Q+I DFIA+D R+ V W  E+ DL R+++K+LL
Sbjct: 61  IARLKFIRLAFCYTGSVHSLVGLDEIKQIIRDFIAIDNRITVFWVSEETDLFRKKSKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLFM+A+ASL +GG++ IS++DS  +NIFSLKINGN  R PEKF QI+  +V+  IDSH 
Sbjct: 121 NLFMIAYASLLKGGEIIISIKDSTADNIFSLKINGNRVRLPEKFIQIMAQDVDLEIDSHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +Q YY  LLA EN ++L  EIIDD NVVLS L +K
Sbjct: 181 VQLYYTALLADENDVKLSYEIIDDQNVVLSVLTKK 215


>gi|222086835|ref|YP_002545369.1| hypothetical protein Arad_3506 [Agrobacterium radiobacter K84]
 gi|221724283|gb|ACM27439.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 215

 Score =  211 bits (536), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 136/197 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    L+  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLTGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +VSWTG +  + + R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAAAEKKAEVSWTGPRAIIPKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA+ S+PRGG + + +++   +  F++   G L R P KF +I  G +E  +D+H 
Sbjct: 121 NLFLVAYGSIPRGGNIDVVLENPDLDAKFTITTKGRLMRVPPKFAEICSGTLEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E+ + L
Sbjct: 181 IQPYYTVLLADESGMEL 197


>gi|307300490|ref|ZP_07580270.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C]
 gi|307318355|ref|ZP_07597790.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83]
 gi|306896037|gb|EFN26788.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83]
 gi|306904656|gb|EFN35240.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C]
          Length = 220

 Score =  208 bits (529), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 135/192 (70%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ S+PRGG + I++++ + + IF+L   G + R P K  +++ G  E  +D+H 
Sbjct: 121 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 180

Query: 181 IQFYYVILLAHE 192
           IQ YY +LLA E
Sbjct: 181 IQPYYTVLLAEE 192


>gi|15966473|ref|NP_386826.1| hypothetical protein SMc00652 [Sinorhizobium meliloti 1021]
 gi|15075744|emb|CAC47299.1| ChpT histidine phosphotransferase [Sinorhizobium meliloti 1021]
          Length = 221

 Score =  208 bits (529), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 135/192 (70%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 2   MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 62  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 121

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ S+PRGG + I++++ + + IF+L   G + R P K  +++ G  E  +D+H 
Sbjct: 122 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 181

Query: 181 IQFYYVILLAHE 192
           IQ YY +LLA E
Sbjct: 182 IQPYYTVLLAEE 193


>gi|150397806|ref|YP_001328273.1| hypothetical protein Smed_2608 [Sinorhizobium medicae WSM419]
 gi|150029321|gb|ABR61438.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 220

 Score =  207 bits (527), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 91/192 (47%), Positives = 135/192 (70%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVTWNGPRAIIAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ S+PRGG + I++++ + + +F+L   G + R P K  +++ G  E  +D+H 
Sbjct: 121 NLFLIAYGSIPRGGIIDITLENPEFDALFTLSAKGRMMRVPPKLVELISGTPEEAVDAHS 180

Query: 181 IQFYYVILLAHE 192
           IQ YY +LLA E
Sbjct: 181 IQPYYTVLLAEE 192


>gi|227823289|ref|YP_002827261.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234]
 gi|227342290|gb|ACP26508.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234]
          Length = 215

 Score =  207 bits (527), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 135/192 (70%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 2   MAKNPNLTLTGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W+G +  + + R K+LL
Sbjct: 62  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAAAEKKTEVNWSGPRAIIGKNRVKLLL 121

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ ++PRGG + I++++ + + +F+L   G + R P K  +++ G  E  +D+H 
Sbjct: 122 NLFLIAYGAIPRGGSIDITLENPEFDAVFTLVAKGRMMRVPPKLMELLSGTPEEAVDAHS 181

Query: 181 IQFYYVILLAHE 192
           IQ YY +LLA E
Sbjct: 182 IQPYYTVLLAEE 193


>gi|15889709|ref|NP_355390.1| hypothetical protein Atu2438 [Agrobacterium tumefaciens str. C58]
 gi|15157619|gb|AAK88175.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 215

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 139/205 (67%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M   +   LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A
Sbjct: 1   MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GS  + I  G+ E+  +DF A +K+ +VSW+G +  + + R K+LL
Sbjct: 61  SVRLKFARLAFGASGSAGASIDTGEAEKAAQDFAAAEKKAEVSWSGPRAIVPKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA+ ++PRGG V + +++ + +  F + + G + R P KF +I +G +E  +D+H 
Sbjct: 121 NLFLVAYGAIPRGGNVDVLLENPEGDARFEIAVKGRMMRVPAKFVEIYEGRLEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDH 205
           +Q YY +LLA E  + +  ++ DD 
Sbjct: 181 VQPYYTLLLAEEANMTVEYKVHDDR 205


>gi|222149590|ref|YP_002550547.1| hypothetical protein Avi_3529 [Agrobacterium vitis S4]
 gi|221736572|gb|ACM37535.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 216

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 87/197 (44%), Positives = 139/197 (70%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M KN+   L+  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MLKNVNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+ ++DF A +K+ +++W G +  +++ R K+L+
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAVKDFAAAEKKTEITWNGPRAIIAKNRVKLLM 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL +VA+ ++PRGG + +++++ + +  F++   G + R P KF +I +G +E  +D+H 
Sbjct: 121 NLMLVAYGAIPRGGSLDVTLENPEYDAKFTIVAKGRMLRVPPKFAEICNGQMEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E+ + L
Sbjct: 181 IQPYYTVLLADESSMEL 197


>gi|325293788|ref|YP_004279652.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3]
 gi|325061641|gb|ADY65332.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3]
          Length = 215

 Score =  206 bits (523), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 87/192 (45%), Positives = 134/192 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M   +   LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A
Sbjct: 1   MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GS  + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSAGASIDTGEAEKAAKDFAAAEKKAEVTWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+V+++++PRGG V + ++D + +  F + + G + R P KF +I +G +E  +D+H 
Sbjct: 121 NLFLVSYSAIPRGGNVDVVLEDPEGDAKFEITVKGKMMRIPAKFAEIYEGRLEEAVDAHS 180

Query: 181 IQFYYVILLAHE 192
           +Q YY +LLA E
Sbjct: 181 VQPYYTLLLAEE 192


>gi|190893162|ref|YP_001979704.1| hypothetical protein RHECIAT_CH0003580 [Rhizobium etli CIAT 652]
 gi|218516916|ref|ZP_03513756.1| hypothetical protein Retl8_26701 [Rhizobium etli 8C-3]
 gi|190698441|gb|ACE92526.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 215

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 136/197 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++S+PRGG + +++++ + +  F+L   G + R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 181 IQPYYTVLLAEECGMTL 197


>gi|86358934|ref|YP_470826.1| hypothetical protein RHE_CH03336 [Rhizobium etli CFN 42]
 gi|86283036|gb|ABC92099.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 215

 Score =  205 bits (522), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 136/197 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAIAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F+L   G L R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFTLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 181 IQPYYAVLLAEECGMTL 197


>gi|218675161|ref|ZP_03524830.1| hypothetical protein RetlG_28959 [Rhizobium etli GR56]
          Length = 232

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 136/197 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 18  MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 77

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 78  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 137

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++S+PRGG + +++++ + +  F+L   G + R P KF +I  G +E  ID+H 
Sbjct: 138 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGAIEEAIDAHS 197

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 198 IQPYYAVLLAEECGMTL 214


>gi|209550657|ref|YP_002282574.1| hypothetical protein Rleg2_3081 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536413|gb|ACI56348.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 216

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 136/197 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN+   L+  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNLNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 181 IQPYYTVLLAQECGMTL 197


>gi|218682347|ref|ZP_03529948.1| hypothetical protein RetlC8_26202 [Rhizobium etli CIAT 894]
          Length = 243

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 135/197 (68%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 29  MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 88

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 89  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 148

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 149 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGAIEEAIDAHS 208

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 209 IQPYYTVLLAQECGMTL 225


>gi|241206028|ref|YP_002977124.1| hypothetical protein Rleg_3338 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859918|gb|ACS57585.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 215

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 135/197 (68%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 181 IQPYYTVLLAQECGMTL 197


>gi|116253501|ref|YP_769339.1| hypothetical protein RL3760 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258149|emb|CAK09250.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 216

 Score =  204 bits (519), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 93/197 (47%), Positives = 135/197 (68%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 2   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 62  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 121

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 122 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 181

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E  + L
Sbjct: 182 IQPYYTVLLAQECGMTL 198


>gi|163758755|ref|ZP_02165842.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43]
 gi|162284045|gb|EDQ34329.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43]
          Length = 218

 Score =  200 bits (509), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 91/197 (46%), Positives = 136/197 (69%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M LIR S+++A
Sbjct: 1   MAKNKNLTLAGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+ + D+++ DK+ +V W+G +  + + + K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAVLDYVSADKKTEVKWSGPRAIIPKNQVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA+ ++PRGG++ + ++    +  F L   G + R P KF +I  G ++  ID+H 
Sbjct: 121 NLFLVAYGAIPRGGEIDVILETLDTDPKFRLVSRGRMVRVPPKFLEIHSGELDEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRL 197
           IQ YY +LLA E+ + L
Sbjct: 181 IQPYYTVLLADESGMAL 197


>gi|319781796|ref|YP_004141272.1| hypothetical protein Mesci_2070 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167684|gb|ADV11222.1| Protein of unknown function DUF2328 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 209

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 130/187 (69%), Gaps = 2/187 (1%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMKLIRQSARNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS   LI  GD E V   F+  +++ +++W G +  L + + K+LLNL +VA
Sbjct: 65  ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGPRALLPKNKVKLLLNLILVA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYY 185
           +A++PRGGK+++++++ + E  F+L   G + R P KF ++  G+  E  ID+H +Q YY
Sbjct: 124 NAAIPRGGKLSVTLENLETEPRFALTSAGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183

Query: 186 VILLAHE 192
            +LLA E
Sbjct: 184 TLLLARE 190


>gi|13472495|ref|NP_104062.1| hypothetical protein mlr2813 [Mesorhizobium loti MAFF303099]
 gi|14023241|dbj|BAB49848.1| mlr2813 [Mesorhizobium loti MAFF303099]
          Length = 209

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 129/187 (68%), Gaps = 2/187 (1%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS   LI  GD E V   F+  +++ +++W G +  L + + K+LLNL +VA
Sbjct: 65  ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGARALLPKNKVKLLLNLILVA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYY 185
           +A++PRGGK+ +++++ + E   SL  +G + R P KF ++  G+  E  ID+H +Q YY
Sbjct: 124 NAAIPRGGKLVVTLENLETEPRISLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183

Query: 186 VILLAHE 192
            +LLA E
Sbjct: 184 TLLLARE 190


>gi|153008901|ref|YP_001370116.1| hypothetical protein Oant_1571 [Ochrobactrum anthropi ATCC 49188]
 gi|239832475|ref|ZP_04680804.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|151560789|gb|ABS14287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
 gi|239824742|gb|EEQ96310.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 209

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 124/191 (64%), Gaps = 2/191 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  RL+F 
Sbjct: 6   TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFA 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ ++ +
Sbjct: 66  RIAFGAAGSAGVQIDTGDAQNVATEYFK-NEKPEFTWEGTRVLLPKNKVKLLLNMLLIGN 124

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
           A++PRGG + + ++    E  F + + G + R P KF ++  G   E  ID+H +Q YY 
Sbjct: 125 AAIPRGGSLAVRLEGGDTEPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQPYYT 184

Query: 187 ILLAHENKIRL 197
           +LLA E  +++
Sbjct: 185 LLLAEEAGMKI 195


>gi|62290478|ref|YP_222271.1| hypothetical protein BruAb1_1585 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700401|ref|YP_414975.1| hypothetical protein BAB1_1613 [Brucella melitensis biovar Abortus
           2308]
 gi|189024705|ref|YP_001935473.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19]
 gi|237815986|ref|ZP_04594983.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689778|ref|ZP_05153032.1| hypothetical protein Babob68_06304 [Brucella abortus bv. 6 str.
           870]
 gi|254694267|ref|ZP_05156095.1| hypothetical protein Babob3T_06314 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697922|ref|ZP_05159750.1| hypothetical protein Babob28_09475 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730812|ref|ZP_05189390.1| hypothetical protein Babob42_06334 [Brucella abortus bv. 4 str.
           292]
 gi|256258030|ref|ZP_05463566.1| hypothetical protein Babob9C_11918 [Brucella abortus bv. 9 str.
           C68]
 gi|260547009|ref|ZP_05822748.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260755310|ref|ZP_05867658.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758531|ref|ZP_05870879.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260762355|ref|ZP_05874698.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884327|ref|ZP_05895941.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261214574|ref|ZP_05928855.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|297248861|ref|ZP_06932579.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196]
 gi|62196610|gb|AAX74910.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616502|emb|CAJ11569.1| conserved hypothetical protein [Brucella melitensis biovar Abortus
           2308]
 gi|189020277|gb|ACD72999.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19]
 gi|237789284|gb|EEP63495.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|260096059|gb|EEW79936.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668849|gb|EEX55789.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672787|gb|EEX59608.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675418|gb|EEX62239.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873855|gb|EEX80924.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916181|gb|EEX83042.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|297176030|gb|EFH35377.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196]
          Length = 209

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 126/195 (64%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++ + ++PRGG + + ++ S  +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGSDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY +LLA E  +++
Sbjct: 181 PYYTLLLAEEAGMKI 195


>gi|306843048|ref|ZP_07475673.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2]
 gi|306286778|gb|EFM58324.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2]
          Length = 207

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 123/191 (64%), Gaps = 2/191 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  RL+F 
Sbjct: 4   TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFA 63

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ ++ +
Sbjct: 64  RIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNMLLIGN 122

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
            ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H IQ YY 
Sbjct: 123 GAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSIQPYYT 182

Query: 187 ILLAHENKIRL 197
           +LLA E  +++
Sbjct: 183 LLLAEEAGMKI 193


>gi|110634560|ref|YP_674768.1| hypothetical protein Meso_2211 [Mesorhizobium sp. BNC1]
 gi|110285544|gb|ABG63603.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 209

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 127/188 (67%), Gaps = 2/188 (1%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ MQLIR S+++A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGTDEDAMQLIRASAVNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS    I  GD E V   FI  +++  + W G +  L + R K+LLNL ++A
Sbjct: 65  ARIAFGAAGSAGMQIDTGDAEAVATAFIR-NEKPDLEWIGGRAFLPKNRVKLLLNLLLIA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185
           +A++PRGGK+T+ +++     +F++  +G + R P KF  +  G  ++  ID+H +QFYY
Sbjct: 124 NAAIPRGGKLTVRLENLDASPLFTITAHGPMVRVPAKFLDLHAGRQLDEAIDAHSVQFYY 183

Query: 186 VILLAHEN 193
            +LLA E 
Sbjct: 184 TLLLARET 191


>gi|254710629|ref|ZP_05172440.1| hypothetical protein BpinB_10236 [Brucella pinnipedialis B2/94]
 gi|261318201|ref|ZP_05957398.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261297424|gb|EEY00921.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
          Length = 209

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 126/195 (64%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY++LLA E  +++
Sbjct: 181 PYYMLLLAEEAGMKI 195


>gi|294852910|ref|ZP_06793583.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026]
 gi|294821499|gb|EFG38498.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026]
          Length = 209

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY +LLA E  +++
Sbjct: 181 PYYTLLLAEEAGMKI 195


>gi|148560434|ref|YP_001259465.1| hypothetical protein BOV_1541 [Brucella ovis ATCC 25840]
 gi|163843847|ref|YP_001628251.1| hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445]
 gi|225628032|ref|ZP_03786068.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|254702315|ref|ZP_05164143.1| hypothetical protein Bsuib55_15846 [Brucella suis bv. 5 str. 513]
 gi|254714813|ref|ZP_05176624.1| hypothetical protein BcetM6_16034 [Brucella ceti M644/93/1]
 gi|254717873|ref|ZP_05179684.1| hypothetical protein BcetM_16001 [Brucella ceti M13/05/1]
 gi|254719623|ref|ZP_05181434.1| hypothetical protein Bru83_08780 [Brucella sp. 83/13]
 gi|256032122|ref|ZP_05445736.1| hypothetical protein BpinM2_16003 [Brucella pinnipedialis
           M292/94/1]
 gi|256061644|ref|ZP_05451783.1| hypothetical protein Bneo5_14955 [Brucella neotomae 5K33]
 gi|256160318|ref|ZP_05458012.1| hypothetical protein BcetM4_15031 [Brucella ceti M490/95/1]
 gi|256255523|ref|ZP_05461059.1| hypothetical protein BcetB_14808 [Brucella ceti B1/94]
 gi|256370011|ref|YP_003107522.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915]
 gi|260169257|ref|ZP_05756068.1| hypothetical protein BruF5_13023 [Brucella sp. F5/99]
 gi|261219719|ref|ZP_05934000.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261222733|ref|ZP_05937014.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261322608|ref|ZP_05961805.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325654|ref|ZP_05964851.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752881|ref|ZP_05996590.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261758770|ref|ZP_06002479.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265984634|ref|ZP_06097369.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265989234|ref|ZP_06101791.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265998695|ref|ZP_06111252.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|306837742|ref|ZP_07470610.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653]
 gi|306844598|ref|ZP_07477185.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1]
 gi|148371691|gb|ABQ61670.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|163674570|gb|ABY38681.1| Hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445]
 gi|225617195|gb|EEH14241.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|256000174|gb|ACU48573.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915]
 gi|260921317|gb|EEX87970.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260924808|gb|EEX91376.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261295298|gb|EEX98794.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261301634|gb|EEY05131.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261738754|gb|EEY26750.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261742634|gb|EEY30560.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|262553319|gb|EEZ09153.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264661431|gb|EEZ31692.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264663226|gb|EEZ33487.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306275042|gb|EFM56805.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1]
 gi|306407198|gb|EFM63409.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653]
          Length = 209

 Score =  164 bits (416), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 125/195 (64%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY +LLA E  +++
Sbjct: 181 PYYTLLLAEEAGMKI 195


>gi|23502461|ref|NP_698588.1| hypothetical protein BR1598 [Brucella suis 1330]
 gi|161619538|ref|YP_001593425.1| hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365]
 gi|254704843|ref|ZP_05166671.1| hypothetical protein Bsuib36_13174 [Brucella suis bv. 3 str. 686]
 gi|260565915|ref|ZP_05836385.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261755539|ref|ZP_05999248.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|23348452|gb|AAN30503.1| conserved hypothetical protein [Brucella suis 1330]
 gi|161336349|gb|ABX62654.1| Hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365]
 gi|260155433|gb|EEW90513.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261745292|gb|EEY33218.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 209

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 125/195 (64%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ ++ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSNARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY +LLA E  +++
Sbjct: 181 PYYTLLLAEEAGMKI 195


>gi|225853071|ref|YP_002733304.1| hypothetical protein BMEA_A1650 [Brucella melitensis ATCC 23457]
 gi|256045214|ref|ZP_05448112.1| hypothetical protein Bmelb1R_12036 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114166|ref|ZP_05454920.1| hypothetical protein Bmelb3E_15252 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263446|ref|ZP_05465978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260565188|ref|ZP_05835672.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991647|ref|ZP_06104204.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995485|ref|ZP_06108042.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225641436|gb|ACO01350.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260151256|gb|EEW86350.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262766598|gb|EEZ12387.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002431|gb|EEZ15006.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093454|gb|EEZ17504.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409614|gb|ADZ66679.1| conserved hypothetical protein [Brucella melitensis M28]
 gi|326539317|gb|ADZ87532.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 209

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 124/195 (63%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E   +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY +LLA E  +++
Sbjct: 181 PYYTLLLAEEAGMKI 195


>gi|17986707|ref|NP_539341.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M]
 gi|17982330|gb|AAL51605.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M]
          Length = 207

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 122/191 (63%), Gaps = 2/191 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            LS++DL ALLCSRICHDIISP+GAI+N LELL+E   +++ M LI+ S+ +A  RL+F 
Sbjct: 4   TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASARLQFA 63

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ ++ +
Sbjct: 64  RIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNMLLIGN 122

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
            ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q YY 
Sbjct: 123 GAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQPYYT 182

Query: 187 ILLAHENKIRL 197
           +LLA E  +++
Sbjct: 183 LLLAEEAGMKI 193


>gi|260462504|ref|ZP_05810711.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031700|gb|EEW32969.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 209

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 129/187 (68%), Gaps = 2/187 (1%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS   +I  GD E V   F+  +++ ++ W G +  L + + K+LLNL +VA
Sbjct: 65  ARIAFGAAGSAGMMIDTGDAEAVAIAFLK-NEKPELVWNGIRALLPKNKVKLLLNLLLVA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYY 185
           +A++PRGGK+ +++++ + E  FSL  +G + R P KF ++  G+  E  ID+H +Q YY
Sbjct: 124 NAAIPRGGKLVVTLENLETEPRFSLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183

Query: 186 VILLAHE 192
            +LLA E
Sbjct: 184 TLLLARE 190


>gi|163868752|ref|YP_001609969.1| hypothetical protein Btr_1642 [Bartonella tribocorum CIP 105476]
 gi|161018416|emb|CAK01974.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 212

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 129/208 (62%), Gaps = 7/208 (3%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +L  MDL ALLCSRICHD+ISP+GAI N++EL D+ G E+E +QL+RLS +SA  RL+F 
Sbjct: 6   SLKPMDLAALLCSRICHDLISPVGAIQNAMELYDDGGAEEEALQLVRLSVVSASARLQFA 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG+ G+    I     EQV + ++  +K   + W      L ++  K+LLNL ++A+
Sbjct: 66  RLAFGFAGASGGQIDTRAAEQVAQQYMQQEK-ATLKWQAPSFLLQKDEVKLLLNLLLIAN 124

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
           A++ RGG++   +   +N+  F  +I G   R P  F  +  G V E  ID+H IQFYY 
Sbjct: 125 ATVSRGGEIVFMIVQQENKRSFRFEIFGKTLRIPPHFLALYHGEVKEELIDAHVIQFYYT 184

Query: 187 ILLAHENKIRLLPEIID--DHNVVLSAL 212
           +LL+   ++++    ID  DH +VL ++
Sbjct: 185 MLLSQRTEMKI---NIDEKDHCIVLESV 209


>gi|319408929|emb|CBI82586.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 212

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 124/199 (62%), Gaps = 2/199 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +L   DL ALLCSRICHD+ISPIGAI N++EL DE G+E++ +QL+R S   A   L+F 
Sbjct: 6   SLKFADLTALLCSRICHDLISPIGAIQNAMELYDEGGVEEDALQLVRSSVSKASACLQFF 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG +GSVDS I     EQV + ++A ++R  + W    + L +   K+LLNL ++A+
Sbjct: 66  RLAFGASGSVDSQIDTRFAEQVAQQYMA-EERAILKWQAPTLLLPKNEVKLLLNLLLIAN 124

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186
            ++ RGG++ +++    N   F  +I G + R P +F ++ +   +E TID+H IQFYY 
Sbjct: 125 TTISRGGEIVVTIAQDINTRSFRFEICGQILRIPPRFVELYNKKALEETIDAHAIQFYYT 184

Query: 187 ILLAHENKIRLLPEIIDDH 205
           ILLA    + L     D H
Sbjct: 185 ILLAELTGMTLNIYETDSH 203


>gi|121602758|ref|YP_989298.1| hypothetical protein BARBAKC583_1020 [Bartonella bacilliformis
           KC583]
 gi|120614935|gb|ABM45536.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
          Length = 212

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 122/199 (61%), Gaps = 2/199 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +L S DL ALLCSR+CHD+ISPIGAI N++EL DE   +++ +QL+R+S   A  RL+F 
Sbjct: 6   SLKSTDLAALLCSRLCHDLISPIGAIQNAMELYDEGCADEDALQLVRISVAKASARLQFA 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GSV   I    +EQV + ++A +++  + W    + L ++  K LLNL  +A+
Sbjct: 66  RLAFGNAGSVGCQIDTSFVEQVAQQYMA-EEKATLKWQAPSLLLPKDEVKFLLNLLFIAN 124

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
           A++PRGG++ + +    +   F  +I G + +    F ++ +G + E  +D+H IQ YY 
Sbjct: 125 ATVPRGGEIAMMILQDADTRSFRFEIYGKILKISPYFIELNNGKLPEEPVDAHTIQLYYT 184

Query: 187 ILLAHENKIRLLPEIIDDH 205
            LLA  + +++     +DH
Sbjct: 185 ALLAEISAMKVSIHETNDH 203


>gi|240850929|ref|YP_002972329.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup]
 gi|240268052|gb|ACS51640.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup]
          Length = 212

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 132/207 (63%), Gaps = 5/207 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +L+  DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+RLS  SA  RL+F 
Sbjct: 6   SLNPTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRLSVASAAARLQFA 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG+ G+    I     EQV + ++  +++  + W    + L ++  K+LLNL ++A+
Sbjct: 66  RLAFGFAGASGGQIDTRAAEQVAQQYMK-EEKATLKWQASSLLLPKDEVKLLLNLLLIAN 124

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
           A++ RGG++ + +   +N+  F  ++ G   R P  F  +  G V E  ID+H IQFYY 
Sbjct: 125 ATVSRGGEIVVMILQEENKRSFRFEVFGKTLRIPPHFLALFRGEVQEELIDAHVIQFYYT 184

Query: 187 ILLAHENKIRL-LPEIIDDHNVVLSAL 212
           +LL+   ++++ + E  +DH +VL ++
Sbjct: 185 MLLSQMTEMKINIDE--NDHCIVLESV 209


>gi|49475925|ref|YP_033966.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1]
 gi|49238733|emb|CAF27989.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1]
          Length = 212

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 123/195 (63%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+R S  SA  R
Sbjct: 2   TLAVSLESTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRWSVASASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG+ G+    I    +EQV + ++  +++  + W    + L +   K+LLNL 
Sbjct: 62  LQFARLAFGFAGTSRGQIDTRSVEQVAQQYMK-EEKATLKWQIPALLLPKNEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ RGG++ + +   +N++ F  +I G   R P  F  + +G + E  ID+H IQ
Sbjct: 121 LIANATVSRGGEIVVMIVQGENQHSFRFEICGKTLRIPSHFIALYNGEIQEEFIDAHVIQ 180

Query: 183 FYYVILLAHENKIRL 197
           FYY +LLA    +++
Sbjct: 181 FYYTMLLAQMTGMKI 195


>gi|49474505|ref|YP_032547.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse]
 gi|49240009|emb|CAF26424.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse]
          Length = 212

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 117/189 (61%), Gaps = 2/189 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISP+GAI N++EL DE G +++ +QL+R +  SA  R
Sbjct: 2   TLAVSLKSTDLAALLCSRICHDLISPVGAIQNAMELYDEGGTDEDTLQLVRWAVASASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F+RLAFG++G+  S +     EQV + ++  +++  + W    + L +   K+LLNL 
Sbjct: 62  LQFLRLAFGFSGAAGSQVDTRSAEQVAQQYMK-EEKATLKWQAPALLLPKNEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+ +  RGG++ + +   + +  F  +I G   R P  F  + +G + E  ID+  IQ
Sbjct: 121 LIANTTASRGGEIVVMILQDEYKRSFRFEICGKTLRIPAHFVALYNGRIQEELIDAQVIQ 180

Query: 183 FYYVILLAH 191
           FYY +LLA 
Sbjct: 181 FYYTMLLAE 189


>gi|319403799|emb|CBI77383.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 212

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/189 (40%), Positives = 120/189 (63%), Gaps = 2/189 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE   +++V+QL+RLS  +A  R
Sbjct: 2   TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G V+  +     EQV + ++  +K + + W      L ++  K+LLNL 
Sbjct: 62  LQFARLAFGAVGGVEDKVDTIFAEQVSQQYMKEEKAI-LKWQAASFLLPKDEIKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ +GG++ + +  + ++ +F  +I G + R P  F ++ +G + E  ID+   Q
Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFEIRGKILRIPSHFIELYNGKMPEELIDARIAQ 180

Query: 183 FYYVILLAH 191
           FYY ILLA 
Sbjct: 181 FYYTILLAE 189


>gi|319406805|emb|CBI80438.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 212

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 123/196 (62%), Gaps = 2/196 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE   +++V+QL+RLS  +A  R
Sbjct: 2   TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G V+  I     EQV + ++  +K + + W      L ++  K+LLNL 
Sbjct: 62  LQFARLAFGAIGGVEDKIDTIFAEQVSQQYMKEEKAI-LKWQAASFLLPKDEIKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ +GG++ + +  + ++ +F   I G + R P  F ++ +G + E  ID+   Q
Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFDIRGKILRVPSHFIELYNGKMPEELIDARIAQ 180

Query: 183 FYYVILLAHENKIRLL 198
           FYY ILLA    ++++
Sbjct: 181 FYYTILLAEITAMKII 196


>gi|319898470|ref|YP_004158563.1| hypothetical protein BARCL_0294 [Bartonella clarridgeiae 73]
 gi|319402434|emb|CBI75975.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 212

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 2/189 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE G +++ +QL+RLS  +A  R
Sbjct: 2   TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGGADEDALQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G V+  I     +Q+ + ++  +++  + W    + L ++  K+LLNL 
Sbjct: 62  LQFARLAFGSAGGVEDKIDTDFAKQISQQYMK-EEKATLKWQASSLLLQKDEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+  +   G++++ +    N+ +F  +I G + R P +F ++ +G + E  ID+H +Q
Sbjct: 121 LIANTIVSHNGEISVIILQDTNKRVFRFEICGKILRTPSRFIELYNGQMSEELIDAHVVQ 180

Query: 183 FYYVILLAH 191
            YY ILLA 
Sbjct: 181 LYYTILLAE 189


>gi|296444665|ref|ZP_06886629.1| Protein of unknown function DUF2328 [Methylosinus trichosporium
           OB3b]
 gi|296257933|gb|EFH04996.1| Protein of unknown function DUF2328 [Methylosinus trichosporium
           OB3b]
          Length = 228

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 118/202 (58%), Gaps = 9/202 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           F L  MDL ALL SR+CHD+ISP+GAI N LE+L+E     +    + LI+ S+  A  R
Sbjct: 4   FALDPMDLAALLSSRVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSAAEASSR 63

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  GS  + I  GD E V    +A D+R ++ W+  ++ +S+ + K+LLNL 
Sbjct: 64  LQFCRLAFGAAGSKGAAIDTGDAEHVTRQLLA-DERTRLEWSVPRVLMSKNKVKLLLNLC 122

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182
           ++A A++PRGG +++S    +++  F++   G  AR       ++ G  E   +D+  IQ
Sbjct: 123 LIADATIPRGGVISVSSAGGEDDLSFTIVAKGTNARVAAAIPALLAGTPEDGAVDARAIQ 182

Query: 183 FYYVILLAH----ENKIRLLPE 200
            YY  L+A     E +I  +PE
Sbjct: 183 AYYAGLVAEASGLEVEISTIPE 204


>gi|27377302|ref|NP_768831.1| hypothetical protein blr2191 [Bradyrhizobium japonicum USDA 110]
 gi|27350445|dbj|BAC47456.1| blr2191 [Bradyrhizobium japonicum USDA 110]
          Length = 237

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 111/194 (57%), Gaps = 6/194 (3%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDE--VMQLIRLSSMSAIIRLKFMR 68
           ++L ALLCSR+CHD+ISP+GAI N LE+LD+    ED    + LIR S+ +A  RL+F R
Sbjct: 36  LELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPEDREFALDLIRKSAKTASARLQFCR 95

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           LAFG  GS  + I LGD + +    I  D +  ++W   ++ L + R K+LLN+ +VA  
Sbjct: 96  LAFGAAGSSGAQIDLGDAQTMARGHIE-DGKCTITWNLPRLLLPKNRVKLLLNMLVVAQH 154

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++PRGG +TI          F +   G+ AR P+   +++ G      D+H IQ YY  L
Sbjct: 155 TIPRGGTLTIDPVGEGETMSFRITATGHNARLPQNIAELLSGERGPAADAHAIQPYYTRL 214

Query: 189 LAHEN--KIRLLPE 200
           LA      + L PE
Sbjct: 215 LAQACGLTVTLAPE 228


>gi|170742948|ref|YP_001771603.1| hypothetical protein M446_4839 [Methylobacterium sp. 4-46]
 gi|168197222|gb|ACA19169.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 215

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/177 (38%), Positives = 107/177 (60%), Gaps = 5/177 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L   D+ G+ D  + LIR S+  A  RL+F R+AFG  G
Sbjct: 16  CSRVCHDVISPVGAIVNGLEVLEDEDDPGMRDFAIDLIRKSAKQASARLQFARIAFGAAG 75

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           SV + I L D E V     + D++ +++W+  +    + + K+LLNL ++A  ++PRGG 
Sbjct: 76  SVGATIDLADAESVARGLFS-DEKTKLAWSAPRALFPKNKVKLLLNLVVIAVTTIPRGGL 134

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAH 191
           + ++V       +F L   G+ AR P     ++ G+ ES T+D+H +Q YY  L+A 
Sbjct: 135 IDVAVTGEAEAPVFVLTCRGSHARIPAHVEALIAGSPESGTVDAHGVQPYYAGLVAR 191


>gi|220921682|ref|YP_002496983.1| hypothetical protein Mnod_1690 [Methylobacterium nodulans ORS 2060]
 gi|219946288|gb|ACL56680.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 215

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 108/183 (59%), Gaps = 5/183 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L+   + G+ D  + LIR S+  A  RL+F R+AFG  G
Sbjct: 16  CSRVCHDVISPVGAIVNGLEVLEDENDAGMRDFAIDLIRKSARQASARLQFARIAFGAAG 75

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           SV + I L D E V       D++ +++W+  +    + + K+LLNL ++A  ++PRGG 
Sbjct: 76  SVGATIDLADAEGVARGLFG-DEKTKLTWSAPRALFPKNKVKLLLNLVIIAVTAIPRGGV 134

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENK 194
           + ++V       +F L   G+ AR P     ++ G  ES T+D+H +Q YY  L+A    
Sbjct: 135 IDVAVTGEAEAPVFVLTCKGSHARIPAHVEALMAGTPESGTVDAHGVQPYYAGLVARAAG 194

Query: 195 IRL 197
           +++
Sbjct: 195 MQV 197


>gi|319405235|emb|CBI78840.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 212

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE   +++ +QL+RLS  +A  R
Sbjct: 2   TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDALQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  G ++  I     EQV + ++  +K V + W      L ++  K+LLNL 
Sbjct: 62  LQFARMAFGSIGGIEDKIDTSFAEQVSQQYMKEEKAV-LKWQAASFLLPKDEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ +GG++ + +    ++ +F  KI G + R P  F ++ +G + +  +D+   Q
Sbjct: 121 LIANATVVQGGEIGVVILQDTDQRLFRFKICGKMLRVPSHFIELYNGTMPKELVDARVAQ 180

Query: 183 FYYVILLAHENKIRL 197
            YY +LLA    +++
Sbjct: 181 LYYTVLLAEITAMKI 195


>gi|85713641|ref|ZP_01044631.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A]
 gi|85699545|gb|EAQ37412.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A]
          Length = 215

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 4/183 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+    D+    + LIR S+ +A  RL+F 
Sbjct: 13  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDNPKPDDREFALDLIRKSAKTASARLQFC 72

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GSV + I LGD + +       D ++ ++W   ++ L + R K+LLNL ++A 
Sbjct: 73  RLAFGAAGSVGAQIDLGDAQNMARGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIAQ 131

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +T+          F +   G  AR P+     +       +D+H +Q YY  
Sbjct: 132 QTIPRGGVLTVDPLGEGEAMGFRITAAGQNARVPQPIADRLATGSSGVVDAHAVQPYYTR 191

Query: 188 LLA 190
           LLA
Sbjct: 192 LLA 194


>gi|158422707|ref|YP_001523999.1| hypothetical protein AZC_1083 [Azorhizobium caulinodans ORS 571]
 gi|158329596|dbj|BAF87081.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 221

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 121/215 (56%), Gaps = 6/215 (2%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
              +   +S +DL ALLCSR+CHD+ISP+GAI N LE+L   D   + +  + LI  S+ 
Sbjct: 7   GSTVTLKVSPLDLAALLCSRVCHDVISPVGAIVNGLEVLEDEDAPDMREVALDLISKSAR 66

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            A  RL+F RLAFG  GS  + I LGD E V+   +  D R ++ W   +  L + R K+
Sbjct: 67  QASARLQFTRLAFGAAGSARATIDLGDAENVVRGMME-DARTKIDWMLPRELLPKNRVKL 125

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTID 177
           LLNL ++A  ++PRGG + ++   +  +  FS+   G  AR P+    ++DG   E  +D
Sbjct: 126 LLNLMLLAGMTVPRGGVIQVAAVGAAPDMGFSIASTGVSARIPQAILPLLDGVPPEGGLD 185

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +H +Q +Y  LLA +  + +L    D   V LSAL
Sbjct: 186 AHAVQPFYAGLLAQDCGL-VLGFSQDGETVTLSAL 219


>gi|75674717|ref|YP_317138.1| hypothetical protein Nwi_0519 [Nitrobacter winogradskyi Nb-255]
 gi|74419587|gb|ABA03786.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 215

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 4/188 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+    D+    + LIR S+ +A  RL+F 
Sbjct: 13  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSARTASARLQFC 72

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GSV + I LGD + + +     D ++ ++W   ++ L + R K+LLNL ++A 
Sbjct: 73  RLAFGAAGSVSAQIDLGDAQNIAKGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIAQ 131

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +TI          F +   G  AR  +   +++       + +H +Q YY  
Sbjct: 132 QTIPRGGVLTIDPLGEGEAMGFQITAAGLNARVSQPVAELLASGSTGAVYAHAVQPYYTR 191

Query: 188 LLAHENKI 195
           LLA    I
Sbjct: 192 LLAEACGI 199


>gi|304394503|ref|ZP_07376424.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130]
 gi|303293413|gb|EFL87792.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130]
          Length = 211

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 126/207 (60%), Gaps = 5/207 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL 64
            LS +DL AL+ SR+CHDIISP+GA+ N LE+L+E     ++   M+LI  S+ +A  +L
Sbjct: 6   KLSPLDLAALIASRVCHDIISPVGALANGLEVLEEEDSEEMKAFAMELIHKSAKTASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           KF R+AFG +GS  S I  G+ E+++  ++  +K  + +W G +  + + R K+LLNL +
Sbjct: 66  KFCRIAFGASGSAGSSIDTGEAEEMVGLYMNSEK-AEYTWEGSRSFVPKNRVKLLLNLLL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           ++  ++PRGG V + +        F+L+  G  AR P  F  +++G VE  I +H +Q Y
Sbjct: 125 ISLGAIPRGGNVGVQIHGEGETATFTLRCVGPKARVPADFVDMMNGTVEGDITAHAVQPY 184

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211
           Y ++LA +  +  L  +++  +VV +A
Sbjct: 185 YTVMLAQDCGLE-LGAVLEGEDVVFTA 210


>gi|254473075|ref|ZP_05086473.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
 gi|211957796|gb|EEA92998.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
          Length = 218

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 120/187 (64%), Gaps = 4/187 (2%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK 65
           LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L+
Sbjct: 7   LSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGNEDMADFAMDLIRKSARQASAKLQ 66

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F RLAFG  GS  + I LGD ++V   +++ +++  + WT  ++ L + + K++LNL ++
Sbjct: 67  FARLAFGAAGSAGASIDLGDAQEVAVGYMS-NEKANLEWTMPRLLLPKNQVKLILNLLLL 125

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
            +  +PRGG +TIS++  ++   F LK  G  AR P+  ++I+ G     +D+H +Q  Y
Sbjct: 126 MNQCVPRGGTITISMEGDESAPNFLLKAEGTNARIPQVVSEILSGQEPERVDAHTVQPIY 185

Query: 186 VILLAHE 192
            +LLA E
Sbjct: 186 AVLLAGE 192


>gi|146338552|ref|YP_001203600.1| putative Signal transduction histidine kinase [Bradyrhizobium sp.
           ORS278]
 gi|146191358|emb|CAL75363.1| Conserved hypothetical protein; putative Signal transduction
           histidine kinase [Bradyrhizobium sp. ORS278]
          Length = 220

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDE--VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCS++CHD+ISP+GAI N LE+LD+    ED    ++LIR S+ +A  RL+F 
Sbjct: 18  TLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQFC 77

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    I  D +  ++W   ++ L + R K+LLN+ +VA 
Sbjct: 78  RLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVAQ 136

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +TI          F +   G  AR P+    ++ G ++STID+H +Q YY  
Sbjct: 137 QTIPRGGVLTIDPIGEGESMSFRVSATGLNARLPQNIVNLLGGELQSTIDAHAVQPYYTR 196

Query: 188 LLA 190
           LLA
Sbjct: 197 LLA 199


>gi|254708257|ref|ZP_05170085.1| hypothetical protein BpinM_15194 [Brucella pinnipedialis
           M163/99/10]
 gi|261315758|ref|ZP_05954955.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261304784|gb|EEY08281.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
          Length = 192

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 94/136 (69%), Gaps = 1/136 (0%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  RL+F 
Sbjct: 6   TLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARLQFA 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ ++ +
Sbjct: 66  RIAFGAAGSAGVQIDTGDAQNVATEYFR-NEKPEFTWEGARVLLPKNKVKLLLNMLLIGN 124

Query: 128 ASLPRGGKVTISVQDS 143
            ++PRGG + + ++ +
Sbjct: 125 GAIPRGGSLAVRLEGA 140


>gi|148257789|ref|YP_001242374.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1]
 gi|146409962|gb|ABQ38468.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1]
          Length = 220

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 111/183 (60%), Gaps = 4/183 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDE--VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCS++CHD+ISP+GAI N LE+LD+    ED    ++LIR S+ +A  RL+F 
Sbjct: 18  TLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQFC 77

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    I  D +  ++W   ++ L + R K+LLN+ +VA 
Sbjct: 78  RLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVAQ 136

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +T+          F +   G  AR P+    ++ G  +STID+H +Q YY  
Sbjct: 137 QTIPRGGVLTVDPIGEGETMSFRVAATGLNARLPQNIVNLLAGAQQSTIDAHAVQPYYTR 196

Query: 188 LLA 190
           LLA
Sbjct: 197 LLA 199


>gi|209886231|ref|YP_002290088.1| hypothetical protein OCAR_7117 [Oligotropha carboxidovorans OM5]
 gi|209874427|gb|ACI94223.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 212

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 116/204 (56%), Gaps = 4/204 (1%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDE--VMQLIRLSSMSAIIRLKFM 67
           ++DL ALL SR+CHD+I+P+GAI N LE++D     ED+   + LIR S++S   RL+F 
Sbjct: 10  ALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQFC 69

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+A+G  GS  + I LGD ++V    +  D + +++W    + L + R K+LLN+ ++A 
Sbjct: 70  RIAYGAAGSAGTQIDLGDAQKVARGHLE-DAKTKITWNLPHMLLPKNRVKLLLNMMVIAQ 128

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG++ I          F ++  G  AR P    + ++    +++ +H +Q YY  
Sbjct: 129 QAIPRGGELVIDPLGEGETMGFRIRAVGQNAREPHGIAEQLNPENAASVTAHAVQPYYTA 188

Query: 188 LLAHENKIRLLPEIIDDHNVVLSA 211
           LLA     ++     DD  V+ +A
Sbjct: 189 LLAQACGFKVSMTKEDDAVVIATA 212


>gi|154252620|ref|YP_001413444.1| hypothetical protein Plav_2173 [Parvibaculum lavamentivorans DS-1]
 gi|154156570|gb|ABS63787.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 222

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 111/188 (59%), Gaps = 5/188 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64
           ++S+++L AL+CSR+CHD+ISP+GAI N LE+L   D+  ++   M+LI  S+  A  +L
Sbjct: 8   DVSALELAALMCSRVCHDVISPVGAIINGLEVLADDDDPEMKAHAMELITKSAAQASAKL 67

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RL FG  GS  + + L D + V E  + + +R  ++W      + ++  K+LLN+ +
Sbjct: 68  QFARLCFGAAGSASAELDLQDAKAVAEGLM-MGERAALTWNAPAATIGKDYVKLLLNMIL 126

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183
           +  A++PRGG+V +SV     +    ++  G  AR PE+  + + G + +  +D+   Q 
Sbjct: 127 IGMAAIPRGGEVAVSVDGELAKPTLRIRSTGQAARIPEETAKFLGGRSPDRFLDARAAQP 186

Query: 184 YYVILLAH 191
           Y+  L+A 
Sbjct: 187 YFTGLVAR 194


>gi|115526278|ref|YP_783189.1| hypothetical protein RPE_4285 [Rhodopseudomonas palustris BisA53]
 gi|115520225|gb|ABJ08209.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 6/195 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           S++L ALLCSR+CHD+ISP+GAI N LE+LD+    ++    + LIR S+ +A  RL+F 
Sbjct: 22  SLELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKPEDREFALDLIRKSAKTASARLQFC 81

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD   +    +  DK  ++ W   ++ + + RAK+LLN+ ++A 
Sbjct: 82  RLAFGAAGSAGAQIDLGDALNMARGHLEDDK-TKIEWNLPRVLMPKNRAKLLLNMLVIAQ 140

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +T+          F +  NG  AR P    +++    +S ID+H +Q YY  
Sbjct: 141 QTIPRGGVLTVDPIGEGEAMAFRVAANGLNARTPHNVVEMLSTGPKSAIDAHAVQPYYTR 200

Query: 188 LLAHENKIR--LLPE 200
           LLA    +R  L PE
Sbjct: 201 LLAEACGLRVSLAPE 215


>gi|91978143|ref|YP_570802.1| hypothetical protein RPD_3679 [Rhodopseudomonas palustris BisB5]
 gi|91684599|gb|ABE40901.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/195 (37%), Positives = 118/195 (60%), Gaps = 6/195 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F 
Sbjct: 15  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQFC 74

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    +  D++ +++W   ++ L++ R K+LLN+ ++A 
Sbjct: 75  RLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKIAWNLPRLLLAKNRVKLLLNMLIIAQ 133

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +TI      +   F +   G  AR P+   +++ G+    I+SH +Q YY  
Sbjct: 134 QTIPRGGTLTIDPVGEGDNLSFRVIAAGLNARMPQNIAEMLSGSHAGPIESHGVQPYYTR 193

Query: 188 LLAHEN--KIRLLPE 200
           LLA      + L PE
Sbjct: 194 LLAQACGLAVTLAPE 208


>gi|328542567|ref|YP_004302676.1| hypothetical protein SL003B_0947 [polymorphum gilvum SL003B-26A1]
 gi|326412313|gb|ADZ69376.1| hypothetical protein SL003B_0947 [Polymorphum gilvum SL003B-26A1]
          Length = 214

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/188 (40%), Positives = 112/188 (59%), Gaps = 4/188 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64
           +LSS+DL AL+ SRICHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L
Sbjct: 6   DLSSLDLSALVSSRICHDIISPVGAIINGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RLAFG  GS  + I LGD + V   F+  +++  + W  ++  + +   K+LLNL +
Sbjct: 66  QFARLAFGAAGSAGAEIDLGDAQVVASGFME-NEKSNLIWQVDRHLMPKNFVKLLLNLVL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           +A+  +PRGG +T+S+       +F+L+  G   R P    + + G     +D+H +Q  
Sbjct: 125 IANQCVPRGGDITVSMTGEPAAPVFTLEAKGLNPRIPLGMQETLGGQEPERVDAHSVQPI 184

Query: 185 YVILLAHE 192
           Y  LLA E
Sbjct: 185 YTFLLARE 192


>gi|154247415|ref|YP_001418373.1| hypothetical protein Xaut_3487 [Xanthobacter autotrophicus Py2]
 gi|154161500|gb|ABS68716.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 226

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 114/195 (58%), Gaps = 5/195 (2%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI 61
           +   +S++DL ALLCSR+CHD+ISP+GAI N LE+L   D   + D  + LI  S+  A 
Sbjct: 16  VTLAVSALDLGALLCSRVCHDVISPVGAIVNGLEVLEDEDAADMRDVALDLIAKSARQAS 75

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
            RL+F RLAFG  GS  + + LGD EQV+   I  D R +V W+  +  L + R K+LLN
Sbjct: 76  ARLQFTRLAFGAAGSAGARLDLGDAEQVVRPVIE-DGRTRVEWSLPRELLPKNRVKLLLN 134

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHD 180
           L ++A  ++PRGG + IS     +   F L   G  AR PE    +VDG   E  +D+H 
Sbjct: 135 LVLLAGTTIPRGGVIRISAVGEGDATGFVLASTGEKARIPEGLQALVDGVAPEGGLDAHS 194

Query: 181 IQFYYVILLAHENKI 195
           +Q +Y  +LA +  I
Sbjct: 195 VQPFYAGMLARDCAI 209


>gi|39934696|ref|NP_946972.1| hypothetical protein RPA1626 [Rhodopseudomonas palustris CGA009]
 gi|192290212|ref|YP_001990817.1| hypothetical protein Rpal_1816 [Rhodopseudomonas palustris TIE-1]
 gi|39648546|emb|CAE27067.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
 gi|192283961|gb|ACF00342.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 218

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 116/195 (59%), Gaps = 6/195 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    ++LIR S+ +A  RL+F 
Sbjct: 16  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALELIRKSAKTASARLQFC 75

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    +  DK  +++W   ++ L++ R K+LLN+ ++A 
Sbjct: 76  RLAFGAAGSAGAQIDLGDAQNMARGHLEDDK-TKLTWNLPRLLLAKNRVKLLLNMLVIAQ 134

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +TI      +   F +   G  AR P     +++G     I+SH +Q YY  
Sbjct: 135 QTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYTR 194

Query: 188 LLAHEN--KIRLLPE 200
           LLA      + L PE
Sbjct: 195 LLAQACGLTVSLAPE 209


>gi|86751029|ref|YP_487525.1| hypothetical protein RPB_3921 [Rhodopseudomonas palustris HaA2]
 gi|86574057|gb|ABD08614.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 217

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 118/195 (60%), Gaps = 6/195 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F 
Sbjct: 15  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQFC 74

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    +  D++ +++W   ++ L++ R K+LLN+ ++A 
Sbjct: 75  RLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKLAWNLPRVLLAKNRVKLLLNMLIIAQ 133

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +T+      +   F +   G  AR P+   + ++G+    ++SH +Q YY  
Sbjct: 134 QTIPRGGTLTVDPVGEGDNLSFRVVAAGLNARMPQNIVEKLNGSHAGPVESHGVQPYYTR 193

Query: 188 LLAHEN--KIRLLPE 200
           LLA      + L PE
Sbjct: 194 LLAESCGLAVTLAPE 208


>gi|316935206|ref|YP_004110188.1| hypothetical protein Rpdx1_3895 [Rhodopseudomonas palustris DX-1]
 gi|315602920|gb|ADU45455.1| Protein of unknown function DUF2328 [Rhodopseudomonas palustris
           DX-1]
          Length = 218

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 115/195 (58%), Gaps = 6/195 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F 
Sbjct: 16  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSAKTASARLQFC 75

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    +  DK  +++W   ++ L++ R K+LLN+ ++A 
Sbjct: 76  RLAFGAAGSAGAQIDLGDAQNMARGHLEDDK-TKLTWNLPRLLLAKNRVKLLLNMLIIAQ 134

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +TI      +   F +   G  AR P     +++G     I+SH +Q YY  
Sbjct: 135 QTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYTR 194

Query: 188 LLAHEN--KIRLLPE 200
           LLA      + L PE
Sbjct: 195 LLAQACGLTVSLAPE 209


>gi|299134357|ref|ZP_07027550.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2]
 gi|298591104|gb|EFI51306.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2]
          Length = 213

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 4/184 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDE--VMQLIRLSSMSAIIRLKFM 67
           ++DL ALL SR+CHD+I+P+GAI N LE++D     ED+   + LIR S++S   RL+F 
Sbjct: 10  ALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQFC 69

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+A+G  GS  + I LGD ++V    +  D + +++W    + L++ R K+LLN+ ++A 
Sbjct: 70  RIAYGAAGSAGTQIDLGDAQKVARGHLE-DGKTKLTWNLPHMLLAKNRVKLLLNMLVIAQ 128

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG++ I      +   F ++  G  AR P      ++    ++I +H +Q YY  
Sbjct: 129 QAIPRGGELVIDPIGEGDTMGFRIRAVGANAREPHSIADQLNLENAASITAHAVQPYYTA 188

Query: 188 LLAH 191
           LLA 
Sbjct: 189 LLAQ 192


>gi|182678005|ref|YP_001832151.1| hypothetical protein Bind_1019 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633888|gb|ACB94662.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 222

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 128/206 (62%), Gaps = 7/206 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIR 63
           F+L  MDL ALLCSR+CHD+ISP+GAI N LE+L+E   E +    + LI+ S+ +A  R
Sbjct: 4   FSLDPMDLAALLCSRVCHDVISPVGAIVNGLEILEEEKEESQRELALDLIKKSAETASAR 63

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  GS  +LI  GD E+V+    A + R  + W   ++ +++++ K++LNL 
Sbjct: 64  LQFCRLAFGAAGSAGALIDTGDAERVMRGLFA-EGRSTLEWHAPRVLMAKDKVKLILNLC 122

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182
           ++A A+LPRGG V+++++  +  +   +   G  AR  +    ++ G  ++ ++D+H IQ
Sbjct: 123 LIAMAALPRGGVVSVTIEGGETPSHIKIDAQGTNARLAQHVPSLLAGAPDTGSVDAHGIQ 182

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVV 208
            +Y  L+A    + L  +II + N+V
Sbjct: 183 AFYTGLVAKSAGMTL--DIIAEPNLV 206


>gi|217978669|ref|YP_002362816.1| hypothetical protein Msil_2530 [Methylocella silvestris BL2]
 gi|217504045|gb|ACK51454.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 227

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/196 (36%), Positives = 111/196 (56%), Gaps = 11/196 (5%)

Query: 19  CSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L+   +  +  E +QLIR S+ +A  RL+F RLAFG  G
Sbjct: 16  CSRVCHDVISPVGAIVNGLEILEDEKDADMRAEALQLIRASAENASARLQFCRLAFGAAG 75

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I  GD E+V     + D ++++ W   ++ L + + K++LNL ++A A++PRGG 
Sbjct: 76  SAGASIDTGDAEKVARGLFS-DAKIKLDWRAPRVLLPKNKVKLILNLCLIASAAIPRGGV 134

Query: 136 VTIS--VQDSKN---ENIFSLKI--NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           +T+     D+K    E   +L++   G  A+       I+ G     ID+H IQ YY  L
Sbjct: 135 ITVETITADAKEGALEPTIALRVIAQGTNAKLAPLTAAILAGAPAEAIDAHAIQPYYAAL 194

Query: 189 LAHENKIRLLPEIIDD 204
           +A    + L  E   D
Sbjct: 195 VAQAAGMSLKAETGAD 210


>gi|218529783|ref|YP_002420599.1| hypothetical protein Mchl_1808 [Methylobacterium chloromethanicum
           CM4]
 gi|218522086|gb|ACK82671.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 246

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 119/195 (61%), Gaps = 5/195 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+ N    L ++DL ALLCSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+
Sbjct: 1   MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V +   A D++ Q++W+  +    + + K
Sbjct: 61  RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176
           +LLNL ++A +++PRGG + ++V    +   F L+  G+ AR P     ++ G  E  T+
Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179

Query: 177 DSHDIQFYYVILLAH 191
           D+H I  +Y  L+A 
Sbjct: 180 DAHGILPFYAGLVAR 194


>gi|163850955|ref|YP_001638998.1| hypothetical protein Mext_1528 [Methylobacterium extorquens PA1]
 gi|254560648|ref|YP_003067743.1| hypothetical protein METDI2193 [Methylobacterium extorquens DM4]
 gi|163662560|gb|ABY29927.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
 gi|254267926|emb|CAX23794.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 246

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/195 (37%), Positives = 119/195 (61%), Gaps = 5/195 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+ N    L ++DL ALLCSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+
Sbjct: 1   MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V +   A D++ Q++W+  +    + + K
Sbjct: 61  RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176
           +LLNL ++A +++PRGG + ++V    +   F L+  G+ AR P     ++ G  E  T+
Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179

Query: 177 DSHDIQFYYVILLAH 191
           D+H I  +Y  L+A 
Sbjct: 180 DAHGILPFYAGLVAR 194


>gi|240138087|ref|YP_002962559.1| hypothetical protein MexAM1_META1p1420 [Methylobacterium extorquens
           AM1]
 gi|240008056|gb|ACS39282.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 246

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 108/177 (61%), Gaps = 5/177 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+ +A  R++F R+AFG  G
Sbjct: 19  CSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSARTASARIQFARIAFGAAG 78

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I L D E+V +   A D++ Q++W+  +    + + K+LLNL ++A +++PRGG 
Sbjct: 79  SAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVKLLLNLVVIASSAIPRGGL 137

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAH 191
           + ++V    +   F L+  G+ AR P     ++ G  E  T+D+H I  +Y  L+A 
Sbjct: 138 IDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTVDAHGILPFYAGLVAR 194


>gi|90425721|ref|YP_534091.1| hypothetical protein RPC_4248 [Rhodopseudomonas palustris BisB18]
 gi|90107735|gb|ABD89772.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 219

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 109/184 (59%), Gaps = 4/184 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F 
Sbjct: 17  ALELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKQEDREFALDLIRKSARTASARLQFC 76

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + +    +  DK  ++ W   +I L + + K+LLN+ ++A 
Sbjct: 77  RLAFGAAGSAGAQIDLGDAQNMARGHLEDDK-TKIEWNLPRILLPKNKVKLLLNMLVIAQ 135

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +T+      +   F +  +G  AR       ++ G    +ID+H +Q YY  
Sbjct: 136 QTIPRGGVLTVEAVGEGDAMGFRVAASGLNARTQTNIVDMLSGAHAGSIDAHAVQPYYTR 195

Query: 188 LLAH 191
           LLA 
Sbjct: 196 LLAQ 199


>gi|92118838|ref|YP_578567.1| hypothetical protein Nham_3377 [Nitrobacter hamburgensis X14]
 gi|91801732|gb|ABE64107.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 215

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/188 (36%), Positives = 107/188 (56%), Gaps = 4/188 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFM 67
           +++L ALLCSR+CHD+ISP+GAI N LE+LD+    D+    + LIR S+ +A  RL+F 
Sbjct: 13  TLELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSAKTASARLQFC 72

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  GS  + I LGD + + +     D ++ ++W   ++ L + R K+LLNL ++A 
Sbjct: 73  RLAFGAAGSAGAQIDLGDAQNMAKGHFE-DGKITIAWNLPRLLLPKNRVKLLLNLLVIAQ 131

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            ++PRGG +T+          F +   G  AR  +    ++       +D+H +Q YY  
Sbjct: 132 QTIPRGGVLTVDPLGEGEAMGFQITAAGLNARLSQTTADLLASGPAGAVDAHAVQPYYTR 191

Query: 188 LLAHENKI 195
           LLA    I
Sbjct: 192 LLAEACGI 199


>gi|298292567|ref|YP_003694506.1| hypothetical protein Snov_2592 [Starkeya novella DSM 506]
 gi|296929078|gb|ADH89887.1| Protein of unknown function DUF2328 [Starkeya novella DSM 506]
          Length = 215

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 103/187 (55%), Gaps = 12/187 (6%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRLAFG 72
           CSR+CHD+ISP+GAI N LE+LD+   ED+       + LI  S+  A  RL+F RLAFG
Sbjct: 17  CSRVCHDVISPVGAIVNGLEVLDD---EDDPSMKAFALDLIAKSAKQASARLQFARLAFG 73

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
             GS  + I  GD E+V   FI  D R  V W   ++   + + K+LLNL +VA +++PR
Sbjct: 74  AAGSAGAQIDTGDAEKVARGFIE-DDRTSVEWHVPRVLSPKNKVKLLLNLMVVATSTIPR 132

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYVILLA 190
           GGK+ +      +E  F L   G+ +R P     ++ G       +D+H IQ +Y  LLA
Sbjct: 133 GGKILVIATGEGDEGGFRLTTEGSHSRIPPHLIALLAGEAPEGGALDAHAIQPHYTGLLA 192

Query: 191 HENKIRL 197
                RL
Sbjct: 193 RAAGYRL 199


>gi|188580968|ref|YP_001924413.1| hypothetical protein Mpop_1715 [Methylobacterium populi BJ001]
 gi|179344466|gb|ACB79878.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 250

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 106/177 (59%), Gaps = 5/177 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+ +A  R++F R+AFG  G
Sbjct: 23  CSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSARTASARVQFARIAFGAAG 82

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I L D E+V     A D++ Q++W+  +    + + K+LLNL ++A +++PRGG 
Sbjct: 83  SAGASIDLADAEKVSRAMFA-DEKTQITWSAPQALFPKNKVKLLLNLVVIASSAIPRGGV 141

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAH 191
           + ++V    +     L+  G+ AR P     ++ G  E  ++D+H I  +Y  L+A 
Sbjct: 142 IDVAVTGGGDAPRLVLRAKGSHARIPPHVEALIAGTPEGGSVDAHGILPFYAGLVAR 198


>gi|46203314|ref|ZP_00051697.2| hypothetical protein Magn03005939 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 246

 Score =  114 bits (285), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 105/177 (59%), Gaps = 5/177 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISPIGAI N LE+L+   +  + +  ++LIR S+ +A  R++F R+AFG  G
Sbjct: 19  CSRVCHDVISPIGAIVNGLEVLEDDNDPSMREFALELIRKSARTASARVQFARIAFGAAG 78

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I L D E+V     A D++ Q++W+  +    + + K+LLNL ++A  ++PRGG 
Sbjct: 79  SAGASIDLADAEKVSRAMFA-DEKTQIAWSAPQALFPKNKVKLLLNLVVIASGAIPRGGL 137

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAH 191
           + ++V        F L+  G+ AR P     ++ G  E  T+D+H I  +Y  L++ 
Sbjct: 138 IDVAVTGGGEAPRFVLRAKGSHARIPPHVEALIAGTPEGGTVDAHGILPFYAGLVSR 194


>gi|170750431|ref|YP_001756691.1| hypothetical protein Mrad2831_4036 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656953|gb|ACB26008.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 236

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 9/179 (5%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKFMRLAFGY 73
           CSR+CHD+ISP+GAI N LE+L++   +DE M     +LI  S+  A  RLKF R+AFG 
Sbjct: 21  CSRVCHDVISPVGAIVNGLEVLED--DQDESMRTFALELIGKSARQASARLKFARIAFGA 78

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
            GS  + I L D E V +   A D + +++W+  +    + + K+LLNL M+A +++PRG
Sbjct: 79  AGSAGASIDLADAESVAKGMFA-DDKTKLTWSAPQALFPKNKVKLLLNLVMIATSAIPRG 137

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAH 191
           G + + V          LK  G+ AR P    +++ G  ES T+D+H I  +Y  L+A 
Sbjct: 138 GVIDVVVSGDGEAPTLVLKAKGSHARIPPHVEELMAGRPESGTVDAHGILPFYAGLVAR 196


>gi|90419034|ref|ZP_01226945.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337114|gb|EAS50819.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 208

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 110/181 (60%), Gaps = 3/181 (1%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           ++CHDIISP+  I + LELLD++  + E M+L+R S  SA+ +L+F R+AFG  GS  + 
Sbjct: 19  KLCHDIISPVFGIQSGLELLDDMPNDPESMELVRHSLKSAVAKLQFARIAFGAAGSQTAT 78

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140
           I L D + V   ++  +K   + W GE   +++   KI+LNL ++A+AS+ RGG++ + V
Sbjct: 79  IDLNDAKTVANGYMNHEK-AAIVWEGEPGYVAKNFVKIILNLIVLANASISRGGEIKV-V 136

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLP 199
            +S +    +++  G+  R   +   +++G+V +  +D+  IQ YY + LA E+ + +  
Sbjct: 137 IESIDPPRATVRATGDRIRIQPRLMALLNGDVAQEAMDAQTIQPYYTLFLAQESGLTVAH 196

Query: 200 E 200
           E
Sbjct: 197 E 197


>gi|118588302|ref|ZP_01545711.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614]
 gi|118439008|gb|EAV45640.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614]
          Length = 214

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64
            LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L
Sbjct: 6   ELSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RLAFG  GS  + I LGD + V   F+  +++  ++W   +  + +   K+LLNL +
Sbjct: 66  QFARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLNWQLSRHLMPKNYVKLLLNLIL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           +A+  +PRGG++ + ++       F+L+ +G   R P    + + G     +D+H +Q  
Sbjct: 125 IANQCVPRGGEIKVEMEGDPQSPAFTLQASGLNPRIPLGMKETLGGEEPERVDAHSVQPI 184

Query: 185 YVILLAHE 192
           Y +LLA E
Sbjct: 185 YTLLLARE 192


>gi|323137584|ref|ZP_08072661.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242]
 gi|322397210|gb|EFX99734.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242]
          Length = 231

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 5/175 (2%)

Query: 21  RICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           R+CHD+ISP+GAI N LE+L+E     +    + LI+ S+  A  RL+F RLAFG  GS 
Sbjct: 18  RVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSANEASARLQFCRLAFGAAGSK 77

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
            + I  GD E V    +A D+R Q++W+  ++ +S+ + K+LLNL ++A A++PRGG ++
Sbjct: 78  GASIDTGDAELVTRQLLA-DERTQLNWSVPRVLMSKNKVKLLLNLCLLADAAIPRGGVIS 136

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAH 191
           +S     +   F ++  G  AR       ++ G   E  ID+  IQ YY  L+A 
Sbjct: 137 VSSTGEDDRIAFRIEAKGTNARVAANIPALLAGEAEEGAIDARAIQPYYAGLVAK 191


>gi|300022395|ref|YP_003755006.1| hypothetical protein Hden_0868 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524216|gb|ADJ22685.1| Protein of unknown function DUF2328 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 216

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 119/213 (55%), Gaps = 7/213 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           M++      + ++L AL+ SRICHDII+P+GAI N LE+LDE      +   + +IR  +
Sbjct: 1   MSQRAPVPPTDLELAALISSRICHDIINPVGAIFNGLEILDEDDDAQAKSYALNVIRNVT 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERA 116
             A  RL+F R AFG  GS  ++I L   E++   F+ + + + ++ W G    +++++ 
Sbjct: 61  EQASARLEFARFAFGAAGSAGAMIDLTTAEKISRGFVKITQGKHKLIWRGAPGFVAKDKV 120

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           K+LLNL   +  +LPRGG++ +++  S  +  F ++  G  AR P+  T  V GN    +
Sbjct: 121 KLLLNLIASSVTALPRGGEIDVAIAGSFEQPSFLIRCKGTSARPPQYLTDFVAGN-PLAL 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           D+  IQ YY   +A    +RL  EI+ D   +L
Sbjct: 180 DAMSIQAYYTWRIAPTAGMRL--EILKDGADIL 210


>gi|307944607|ref|ZP_07659947.1| putative Signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
 gi|307772356|gb|EFO31577.1| putative Signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
          Length = 214

 Score =  109 bits (272), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 109/187 (58%), Gaps = 4/187 (2%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLK 65
           L S+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L+
Sbjct: 7   LPSLDLSALVASRVCHDIISPVGAITNGLEVLDEDGAEDMRDFAMDLIRKSARQASAKLQ 66

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F RLAFG  GS  + I LGD + V   F+  +++  + W   +  + +   K+LLNL ++
Sbjct: 67  FARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLDWQVTRHLMPKNYVKLLLNLILI 125

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A+  +PRGG + ++++   +   F L  +G   R P    + ++G     +D+H +Q  Y
Sbjct: 126 ANQCVPRGGTIKVTMEGEPSSPSFELVASGQNPRIPIGMKETLEGTEPERVDAHSVQPIY 185

Query: 186 VILLAHE 192
             LLA E
Sbjct: 186 TFLLAKE 192


>gi|254500736|ref|ZP_05112887.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11]
 gi|222436807|gb|EEE43486.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11]
          Length = 205

 Score =  108 bits (271), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/189 (39%), Positives = 110/189 (58%), Gaps = 4/189 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFMR 68
           MDL AL+ SR+CHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L+F R
Sbjct: 1   MDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKLQFAR 60

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           LAFG  GS  + I LGD + V   F+  +++  ++W  E+  + +   K+LLNL ++A+ 
Sbjct: 61  LAFGAAGSAGAEIDLGDAQVVATGFME-NEKSNLNWQLERHLMPKNFVKLLLNLILIANQ 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
            +PRGG++ + +  +     F+L   G   R P    + + G     +D+H +Q  Y +L
Sbjct: 120 CVPRGGEIKVEMSGTPQSPSFTLNAAGLNPRIPLGMKETLSGEEPERVDAHSVQPIYSLL 179

Query: 189 LAHENKIRL 197
           LA E  + L
Sbjct: 180 LARECGMEL 188


>gi|85707642|ref|ZP_01038708.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1]
 gi|85689176|gb|EAQ29179.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1]
          Length = 217

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 110/210 (52%), Gaps = 5/210 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKF 66
           S  DL ALLCSR+CHD++SP+GA+ N LELL DE   E  +  ++L+  S+  +  +LKF
Sbjct: 3   SQTDLAALLCSRLCHDMLSPVGALSNGLELLADETDAEMRERCIELLEQSAKISTDKLKF 62

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  G     + + + ++VI    A  KRV+V+W      L +   K++LNL  +A
Sbjct: 63  FRLAFGAAGGFGENVPVEEAQEVIGALAADAKRVEVNWALADSTLPKPAVKVMLNLAQIA 122

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYY 185
             +L RGG + I  +  +       +  G    F E   Q + G + +S I S     + 
Sbjct: 123 LDALVRGGTLDIGAEKREGNIEIVARAAGQRIAFDETIGQALQGELADSDISSRTAAAHM 182

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + L+A E    L   + DD  +VL A+L +
Sbjct: 183 IALVAGEMGGGLQYAVSDDA-LVLGAVLPE 211


>gi|114705528|ref|ZP_01438431.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506]
 gi|114538374|gb|EAU41495.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506]
          Length = 230

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 102/174 (58%), Gaps = 3/174 (1%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S+ICHDIISP+  + + LELLD++  + E M L+R S  +A+ +L+F R+A+G +GS  +
Sbjct: 40  SKICHDIISPVFGVQSGLELLDDMPDDAESMGLVRNSCKAAVGKLQFARMAYGASGSQTA 99

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
            I L D +   E ++A +K   V WTGE     +  AK +LNL ++A +S+ RGG+VT++
Sbjct: 100 AIDLNDAKTTAEGYMAHEKPDLV-WTGEPGYAPKNFAKAVLNLIVLATSSISRGGEVTVA 158

Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHE 192
           ++ + +    ++       R       +++G      I++  IQ YY++  A+E
Sbjct: 159 IE-ATDPGRATVTAKAQRIRIQPDTIALIEGTYNGEAINAQTIQPYYMLFCANE 211


>gi|114569208|ref|YP_755888.1| hypothetical protein Mmar10_0657 [Maricaulis maris MCS10]
 gi|114339670|gb|ABI64950.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 227

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 106/201 (52%), Gaps = 5/201 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           M  ++   L +  L ALLC+R+CHD++SP+ A+  +L + D+     + ++ M+L+R SS
Sbjct: 5   MQDDLPAELPADQLAALLCARLCHDLVSPVSALGAALSVFDDPDSADMHEDAMELVRESS 64

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
             A  +L+F RLAFG  GS   ++   +++++ E   +  K  ++ W  E   L ++ A+
Sbjct: 65  RQAQAKLEFCRLAFGAGGSAPGIMDSRELQRLTEAMFSSVK-PEIVWKVESAGLEKQAAR 123

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTI 176
           +LLN+ ++   + PRGG VTI   ++       +   G  AR      + ++    E+  
Sbjct: 124 LLLNMCLLGVDAAPRGGTVTIEGAETGGGARLRVISEGPRARLEPGTARALEALAPENGY 183

Query: 177 DSHDIQFYYVILLAHENKIRL 197
           D   IQ YY  L+A  N  R+
Sbjct: 184 DGRSIQPYYTGLIARSNGGRV 204


>gi|149187048|ref|ZP_01865355.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21]
 gi|148829337|gb|EDL47781.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21]
          Length = 219

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 3/208 (1%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           S+DL A+LCSR+CHD++SP+GA++N LELL   D+  +   V+ L+  S+ ++  +LKF 
Sbjct: 6   SIDLAAMLCSRLCHDMLSPVGALNNGLELLAMEDDPEMRKNVIALLEQSATTSTNKLKFF 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     + + +   +I+  +A   ++++ W  E  +L++   K+LLN   +A 
Sbjct: 66  RLAFGAAGGFGDRVDVQEPRALIDALVADKDKIEIHWAIEAANLAKPAVKVLLNFAQIAI 125

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            +L RGG + I  +         ++  G    F +   + +DG++  +  S      ++I
Sbjct: 126 DALVRGGTLDIGAEVRDGNCEIVVRATGTKVAFDDNIGKAIDGSLPHSELSSRTAAAHMI 185

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
            L  E     L     D  +VL A+L +
Sbjct: 186 HLLAEGSGGGLQYARTDETLVLGAVLPE 213


>gi|218662514|ref|ZP_03518444.1| hypothetical protein RetlI_25280 [Rhizobium etli IE4771]
          Length = 100

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 62/81 (76%)

Query: 1  MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
          M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 18 MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 77

Query: 61 IIRLKFMRLAFGYTGSVDSLI 81
           +RLKF RLAFG +GSV + I
Sbjct: 78 SVRLKFARLAFGASGSVGASI 98


>gi|332185707|ref|ZP_08387454.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17]
 gi|332014065|gb|EGI56123.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17]
          Length = 214

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 4/191 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEV--GIEDEVMQLIRLSSMSAIIR 63
             +S +D  +LLCSR+CHD++SP+GA++N LELL DE    +    M+L+  S+ ++  +
Sbjct: 1   MTVSPVDFASLLCSRLCHDLLSPVGALNNGLELLADETDPAMRARCMELLADSARASANK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G     + + + +  +E  +  ++R  + W  E   L +   +IL+NL 
Sbjct: 61  LKFFRLAFGAGGGFSDRVDMAEAKAAVEGLLVDNRRTTLGWLVEAPSLPKPAVRILVNLA 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQ 182
           ++A  +L RGG + I  +  +     ++++ G      PE    +++G     + S    
Sbjct: 121 LIAVEALARGGTIDIGAEAGREAIEIAIRLEGPRILLDPEIRRTLMEGQGTEPLGSRTAP 180

Query: 183 FYYVILLAHEN 193
            + +  L  E+
Sbjct: 181 AFLIHTLTVEH 191


>gi|83859260|ref|ZP_00952781.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852707|gb|EAP90560.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 225

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
           ++ +L ALL SR+CHDI  P  A+  +L +LD+   + + D+ + L+R  +     +L++
Sbjct: 8   TAAELAALLSSRVCHDIAGPTSAMGAALSVLDDESALDMRDDAIALLRTGAKQIRAKLEY 67

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+ FG  GS    + L +I+ + E     D R  + W  +   +S+  A++LLNL  + 
Sbjct: 68  ARVCFGAAGSRGGEVSLSEIKSLAEPMFE-DSRPDLVWPSDGGAISKTAARVLLNLIWIG 126

Query: 127 HASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFY 184
             SLPRGG+V I    S +      +   G   R  E + + + G   E   D   +Q Y
Sbjct: 127 VDSLPRGGEVIIEASASSDGGARLRVAAKGMRLRLDEAYQKAIRGERPEDGYDGRSVQPY 186

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
           Y  L+A E+  R     +D   V L+AL+
Sbjct: 187 YAGLIARESGGRAEAR-LDGDRVELAALI 214


>gi|296284605|ref|ZP_06862603.1| hypothetical protein CbatJ_13301 [Citromicrobium bathyomarinum
           JL354]
          Length = 226

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 84/149 (56%), Gaps = 11/149 (7%)

Query: 9   LSSMD------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59
           +S MD      L + LCSR+CHD++SP+GA+ N LELL    +  +     +L+  S+ +
Sbjct: 1   MSGMDETDPLLLASQLCSRLCHDMLSPVGALTNGLELLADEKDPQMRQRCFELLEQSART 60

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           +  +LKF RLAFG  G     + + + + VIE   A  KRV+++W  E   +S+  AK++
Sbjct: 61  SAAKLKFFRLAFGAAGGFGEQVSIDEPKAVIETLAADAKRVELNWAIEAASVSKSAAKVM 120

Query: 120 LNLFMVAHASLPRGGK--VTISVQDSKNE 146
           LNL  +   +L RGG   V I V+D   E
Sbjct: 121 LNLANIGLDALVRGGTLDVGIEVRDDATE 149


>gi|83309426|ref|YP_419690.1| hypothetical protein amb0327 [Magnetospirillum magneticum AMB-1]
 gi|82944267|dbj|BAE49131.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
          Length = 205

 Score = 95.5 bits (236), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 10/189 (5%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LLC+R+CHD+ SP+GA    LELL++ G + E ++L+  S  +A  RLKF+R   G    
Sbjct: 12  LLCARLCHDLASPLGAAAAGLELLED-GNDPETLELVSASMGAATARLKFLRATLGPAND 70

Query: 77  VD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           +  +   LGD+ +      AV   + + W+ E+ ++  E  ++ LNL ++A  +LPRGGK
Sbjct: 71  MPHTQKSLGDLMRAYLSG-AVTGGITLDWSSERPEIDGETGRLRLNLVLIARDALPRGGK 129

Query: 136 VTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
           +      S ++    L++      +    E    ++DG   S       Q  + + LAH 
Sbjct: 130 ILARCAGSGSDGEAGLRVTASGEGMGLTAEARLVLLDGAPPS--GPRGAQAGFALHLAHR 187

Query: 193 N--KIRLLP 199
           N  KIRL P
Sbjct: 188 NGLKIRLTP 196


>gi|294678519|ref|YP_003579134.1| hypothetical protein RCAP_rcc03000 [Rhodobacter capsulatus SB 1003]
 gi|294477339|gb|ADE86727.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 210

 Score = 94.7 bits (234), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 4/136 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMR 68
           S  DLVAL+ SR+CHD+ISP+GAI N +ELL+  G+ D   +QLI  S  +A  R+KF R
Sbjct: 17  SEADLVALVGSRLCHDLISPLGAIGNGVELLNMSGLADSPEVQLISQSVAAANARIKFFR 76

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG   SVD  IG  +I  V+E+ I+   RV+  W G   D SR   K++    +    
Sbjct: 77  IAFGQA-SVDQRIGTPEILGVLEE-ISRGGRVKYHWLGAG-DQSRRVVKLIFLGLLCLEP 133

Query: 129 SLPRGGKVTISVQDSK 144
           +LP GG+V I+ +D +
Sbjct: 134 ALPWGGEVVITEEDGE 149


>gi|87201062|ref|YP_498319.1| hypothetical protein Saro_3050 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136743|gb|ABD27485.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 213

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIR 63
             +S++DL +LLCSR+CHD++SP+GA+ N LELL DE   E      +L+  S+ ++  +
Sbjct: 1   MTVSALDLASLLCSRLCHDMLSPVGALSNGLELLADEKDPEMRQRCFELLEQSAKASADK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G     + + +   +++  +  + RV V+W      L +   K LLNL 
Sbjct: 61  LKFFRLAFGAAGGFGEQVPVNEARPLVDALVGANGRVAVNWMFGVDSLPKPAVKTLLNLA 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           ++   +L RGG + +  +         ++  G    F     Q ++G + ++
Sbjct: 121 LIGLDALVRGGTLDVGAEVRDGVTEIVVRAAGQRIAFDPAIGQALEGALPTS 172


>gi|94497524|ref|ZP_01304093.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58]
 gi|94422941|gb|EAT07973.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58]
          Length = 221

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-DEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
           S++  +LLCSR+CHD++SP+GA++N LEL+ DE    + +  + L+  S+ ++  +LKF 
Sbjct: 13  SIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPAMRERCLDLLGDSARTSANKLKFF 72

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     +   + +  IE   A   RV+V W  ++  L +  AKILLNL ++A 
Sbjct: 73  RLAFGSAGGFGEAVPPHEAKVAIEGMFAGAGRVKVGWMVDEQMLGKLAAKILLNLALIAG 132

Query: 128 ASLPRGGKVTISVQ 141
            +L RGG++ I  +
Sbjct: 133 DALVRGGQLDIGAE 146


>gi|294011925|ref|YP_003545385.1| hypothetical protein SJA_C1-19390 [Sphingobium japonicum UT26S]
 gi|292675255|dbj|BAI96773.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 217

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFM 67
           S+D  +LLCSR+CHD++SP+GA++N LEL+ DE   E     + L+  S+ ++  +LKF 
Sbjct: 7   SIDFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSARTSANKLKFF 66

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     +   +    IE   A   RV++ W  E   L +   K+LLNL ++A 
Sbjct: 67  RLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLEKLPVKVLLNLALIAG 126

Query: 128 ASLPRGGKVTISVQ 141
            +L RGG++ I  +
Sbjct: 127 DALVRGGQLDIGAE 140


>gi|85373065|ref|YP_457127.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594]
 gi|84786148|gb|ABC62330.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594]
          Length = 214

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 5/209 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM 67
           ++ L + LCSR+CHD++SP+GA+ N LELL E     +    ++L+  S+ ++  +LKF 
Sbjct: 6   AVTLASQLCSRLCHDLLSPVGALSNGLELLAEEEDPEMRQRCLELLEASARTSANKLKFF 65

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     +G+ + + VI+      KRV+V+W      L +   K++LN   +  
Sbjct: 66  RLAFGAAGGFGDRVGVDEPKAVIDALAQDAKRVEVNWALAVDALPKPAVKVMLNFAQMGL 125

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYV 186
            +L RGG + I  +     +   ++  G    F +   + ++G++ E  +       + +
Sbjct: 126 DALVRGGTLDIGAERRDGASEIVVRATGAKVAFDDSIGRALEGSLPEDGLSGRTAAAHML 185

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            L+A ++   L  +  +D  +VL A+L +
Sbjct: 186 ALIAEQSGGNLQYQKSEDA-LVLGAMLPE 213


>gi|307293089|ref|ZP_07572935.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum
           L-1]
 gi|306881155|gb|EFN12371.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum
           L-1]
          Length = 217

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 3/134 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFM 67
           S++  +LLCSR+CHD++SP+GA++N LEL+ DE   E     + L+  S+ ++  +LKF 
Sbjct: 7   SIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSAKTSANKLKFF 66

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     +   +    IE   A   RV++ W  E   L +   K+LLNL ++A 
Sbjct: 67  RLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLDKLPVKVLLNLALIAG 126

Query: 128 ASLPRGGKVTISVQ 141
            +L RGG++ I  +
Sbjct: 127 DALVRGGQLDIGAE 140


>gi|148552992|ref|YP_001260574.1| hypothetical protein Swit_0063 [Sphingomonas wittichii RW1]
 gi|148498182|gb|ABQ66436.1| Uncharacterized protein [Sphingomonas wittichii RW1]
          Length = 208

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 80/137 (58%), Gaps = 4/137 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFM 67
           S D  +LLCSR+CHD++SP+GA++N +ELL DE   E  +  M+L+  S+ +   RLKF 
Sbjct: 5   SADFASLLCSRLCHDLLSPVGALNNGIELLADETDPEMRERCMELLAESAQTTANRLKFY 64

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     +   +  + IE     + +V++ W  +   L +   K LLNL ++A 
Sbjct: 65  RLAFGAAGGFGERVDTREAREAIEGLHG-NGKVRLGWMVDAPTLPKPAIKTLLNLALIAG 123

Query: 128 ASLPRGGKVTISVQDSK 144
            +L RGG++ I+ +  +
Sbjct: 124 DALVRGGQLDIAAEGGE 140


>gi|197103762|ref|YP_002129139.1| hypothetical protein PHZ_c0296 [Phenylobacterium zucineum HLK1]
 gi|196477182|gb|ACG76710.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 219

 Score = 91.3 bits (225), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 102/205 (49%), Gaps = 7/205 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKFMRL 69
           +L A L +R+CHD ISP  AI + L+LL++   +D   E M LI  S+      L F R+
Sbjct: 16  ELAAFLAARMCHDFISPASAIVSGLDLLEDPSAQDMREEAMGLIESSARKLADLLAFCRV 75

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG + S ++     D+E++     A   R ++ WT E   +++  A+ LLNL  +A A+
Sbjct: 76  AFGASASAETFDPR-DLEKLARGVFA-HMRAELDWTLETPAVNKPTARTLLNLAQMAGAA 133

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           LP GG   +       +   +++  G  AR  PE    +    +   +  H +Q YYV L
Sbjct: 134 LPTGGTARVRAVQEGAQVALAVEATGPRARLRPEVLRGLQGEPLGEGLHGHWVQAYYVHL 193

Query: 189 LAHENKIRLLPEIIDDHNVVLSALL 213
              +   R+  + +++  +V +A L
Sbjct: 194 FVADAGGRVFAD-VNEERIVFAATL 217


>gi|312113704|ref|YP_004011300.1| hypothetical protein Rvan_0925 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218833|gb|ADP70201.1| Protein of unknown function DUF2328 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 217

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 108/198 (54%), Gaps = 9/198 (4%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64
            L    L AL+ S+ICHD+   IGAI+N LELL+E   ED     ++LI+ S+ +A  +L
Sbjct: 5   RLDDTALAALISSKICHDLAGQIGAINNGLELLEEENDEDTRFYALELIQNSAKAAWAQL 64

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            F RLAFG + S+ +L+ +  IEQV   ++   KR ++ W     ++ +E A++L+ L  
Sbjct: 65  DFNRLAFGVSSSLGALVPVQHIEQVARRYLENGKR-RLHWQANVPEIEKEHARLLMALLG 123

Query: 125 VAHASLPRGGKVTISVQDSK---NENIFSLKI--NGNLARFPEKFTQIVDGNVESTIDSH 179
           V+  +LP GG   + +  SK     + F L I   G  AR PE   ++  G++  TID  
Sbjct: 124 VSINALPAGGDYYLGLSASKTRAGRSRFKLIILCRGRAARVPEGVAEVFAGDMTRTIDGR 183

Query: 180 DIQFYYVILLAHENKIRL 197
            +  YY   LA E  ++L
Sbjct: 184 LVIAYYATRLATEASLKL 201


>gi|46200921|ref|ZP_00056203.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 205

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 7/143 (4%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           L  LLC+R+CHD+ SP+GA    +ELL++ G + E + L+  S  +A  RLKF+R A G 
Sbjct: 9   LSELLCARLCHDLASPLGAASAGMELLED-GDDPETLALVSASMAAATARLKFLRAALGP 67

Query: 74  TGSVD-SLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
              +  +   LGD+   I  ++  AV   + + W+ ++ ++  E A++LLNL ++A  +L
Sbjct: 68  ANDMPHTPKSLGDL---IRAYLNGAVTGGITLDWSSDRPEMDGETARLLLNLVLIARDAL 124

Query: 131 PRGGKVTISVQDSKNENIFSLKI 153
           PRGG+++   + S+      L++
Sbjct: 125 PRGGRISARCESSQGGGDAGLRV 147


>gi|56551648|ref|YP_162487.1| hypothetical protein ZMO0752 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761225|ref|ZP_04759313.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260752764|ref|YP_003225657.1| hypothetical protein Za10_0524 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56543222|gb|AAV89376.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374132|gb|EER63629.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258552127|gb|ACV75073.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 208

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 82/141 (58%), Gaps = 3/141 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---R 63
             +++++L +LLCSR+CHD++SP+ A++N +ELL +    +   + I L S SA +   +
Sbjct: 1   MTMTAINLASLLCSRLCHDLLSPVSAMNNGIELLADEHDPEMRARCIDLLSESAKVSASK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G     +   +I + I      D R+Q+ W  +   + ++  +ILLNL 
Sbjct: 61  LKFFRLAFGQGGGFSESVDTEEIREAIAGLFGFDHRIQLGWMVDDPVMEKQAVRILLNLS 120

Query: 124 MVAHASLPRGGKVTISVQDSK 144
           ++A  +L RGG + I  + ++
Sbjct: 121 LIASDALVRGGNLDIGAEGNE 141


>gi|326386902|ref|ZP_08208516.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208582|gb|EGD59385.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 217

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 80/138 (57%), Gaps = 3/138 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
             ++S++L +LL SR+CHD++SP+GA+ N LELL E     +     +L+  S+ ++  +
Sbjct: 1   MTIASLELASLLASRLCHDMLSPVGAMSNGLELLTEEKDPEMRQRCFELLEQSAKASADK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G     + L +   V++  +  + R+ ++W+     + +   K+LLNL 
Sbjct: 61  LRFFRLAFGAAGGFGDTVPLSEPRAVVDALVGGNGRISLNWSLSGDAMPKSAVKVLLNLA 120

Query: 124 MVAHASLPRGGKVTISVQ 141
           ++   +L RGG + I+ +
Sbjct: 121 LIGIEALVRGGTLEIAAE 138


>gi|163746346|ref|ZP_02153704.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45]
 gi|161380231|gb|EDQ04642.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45]
          Length = 200

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 16/187 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFM 67
           ++DL AL+ SRICHD+ISPIGAI+N LELL+  G        ++LI  S  SA  R++F 
Sbjct: 5   NLDLPALIGSRICHDLISPIGAINNGLELLNMAGTGAAPGPELELIGQSVESASARIRFF 64

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMV 125
           R+AFG +G  D  +G G++  ++ D    D R+++ W  T  +   SR+  ++     M 
Sbjct: 65  RIAFGASG--DQAMGQGEVTSILRDLY-TDTRIEIDWQITAPQ---SRDCVRMAFLSLMC 118

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQIVDGNVESTIDSHDIQFY 184
              +L  GG +TI+ Q  K    + L+   + +A  PE +  +   + +  +    +QF 
Sbjct: 119 METALHHGGLITIAEQAGK----WRLQAEADKIAVEPELWALLSKVDQDLQLQPAQVQFA 174

Query: 185 YVILLAH 191
            + +LA 
Sbjct: 175 LLPILAR 181


>gi|146279809|ref|YP_001169967.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558050|gb|ABP72662.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 198

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 4/133 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL ALL SRICHD+ISPIGAI N +ELL   G I    M LI  S  +A  R++F R+AF
Sbjct: 6   DLAALLGSRICHDLISPIGAIGNGVELLMMDGSIRGPEMTLISESVANANARIRFFRVAF 65

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G TG+ +  IG  +I  +++D +    R+Q+ W G   DL R   K+   L +    ++ 
Sbjct: 66  GATGA-EQRIGRPEILSILQD-LTRGGRLQIDWQG-PTDLQRREVKLAFLLILCLETAMA 122

Query: 132 RGGKVTISVQDSK 144
            GG++ +   D++
Sbjct: 123 YGGRIRVERNDAR 135


>gi|254512237|ref|ZP_05124304.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535948|gb|EEE38936.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 5/143 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59
           M + +    S ++L  L+ SRICHD+ISPIGAI N LELL+ VG ++   M+LI  S  S
Sbjct: 1   MQQEVRMGASDVNLAELIGSRICHDLISPIGAITNGLELLEMVGAVKGPEMELISGSVGS 60

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           A  R++F R+AFG   + D  +G  ++ ++++D +    RV++ WT  +  + R + K+ 
Sbjct: 61  AGARIRFFRVAFG--AASDQPLGRAEVVELLKD-VERAGRVRIVWTLTE-PVPRNQVKLA 116

Query: 120 LNLFMVAHASLPRGGKVTISVQD 142
               M   +++P GG+V I+V+ 
Sbjct: 117 FLALMCCESAMPFGGEVEITVRS 139


>gi|260426410|ref|ZP_05780389.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260420902|gb|EEX14153.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 201

 Score = 86.3 bits (212), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 100/196 (51%), Gaps = 12/196 (6%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLK 65
            ++++  +  L+ SR+CHD++SPIGAI N LEL+   G    E M LI  S+  A  R+ 
Sbjct: 1   MSVATARIATLVGSRLCHDLVSPIGAISNGLELIALAGTPGPEEMALIEQSAALATARIN 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG+  S    +G  +  ++++D+     R+ + W  +  D +R   ++     + 
Sbjct: 61  FFRVAFGHA-STQQDVGAREARKLLQDYCK-GSRLSIDWLPDG-DAARTEVQLAFLATLC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQ 182
             ++LP GG+V I+  +         +I+G   R    P+ + Q+    +E+ +    +Q
Sbjct: 118 CESALPLGGRVHITHIEGGG-----WRISGTGQRLSIEPDLWAQLTSTTLEAEVTPARVQ 172

Query: 183 FYYVILLAHENKIRLL 198
           F  + LLA E   +++
Sbjct: 173 FALLALLAPERGRKMV 188


>gi|260433681|ref|ZP_05787652.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417509|gb|EEX10768.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 198

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMR 68
           ++++L  L+ SRICHD+ISPIGAI N LELL+ V G +   M+LI  S  SA  R++F R
Sbjct: 4   TNVNLAELIGSRICHDLISPIGAITNGLELLEMVGGTQGPEMELITGSVGSAGARIRFFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG   + D  +G  ++  ++ D +    RV+V W   +  + R + K+     M   +
Sbjct: 64  VAFGA--ASDQPLGRSEVTDLLRD-VERAGRVRVHWNVTEA-MPRNQIKLAFLALMCCES 119

Query: 129 SLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           ++P GG+V I SV D       + ++N +    P+ +  +  G   + +    +QF  + 
Sbjct: 120 AMPMGGEVKIDSVGDKWTVTGTADRMNVD----PDLWKGLPTGTFANKVTPAQVQFALLP 175

Query: 188 LLAHENKIRLLPE 200
             A     R+L E
Sbjct: 176 QTAAAQGRRVLAE 188


>gi|77465006|ref|YP_354509.1| hypothetical protein RSP_3825 [Rhodobacter sphaeroides 2.4.1]
 gi|77389424|gb|ABA80608.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 198

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL ALL SRICHD+ISPIGAI N +ELL   G I    M LI  S   A  R++F R+AF
Sbjct: 6   DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 65

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G T ++D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++ 
Sbjct: 66  GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 122

Query: 132 RGGKVTISVQDSK 144
            GG++ +   D++
Sbjct: 123 YGGRIRVERSDAR 135


>gi|126464268|ref|YP_001045381.1| hypothetical protein Rsph17029_3517 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106079|gb|ABN78609.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 198

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL ALL SRICHD+ISPIGAI N +ELL   G I    M LI  S   A  R++F R+AF
Sbjct: 6   DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 65

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G T ++D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++ 
Sbjct: 66  GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 122

Query: 132 RGGKVTISVQDSK 144
            GG++ +   D++
Sbjct: 123 YGGRIRVERSDAR 135


>gi|221368988|ref|YP_002520084.1| hypothetical protein RSKD131_3151 [Rhodobacter sphaeroides KD131]
 gi|221162040|gb|ACM03011.1| Hypothetical Protein RSKD131_3151 [Rhodobacter sphaeroides KD131]
          Length = 276

 Score = 84.7 bits (208), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL ALL SRICHD+ISPIGAI N +ELL   G I    M LI  S   A  R++F R+AF
Sbjct: 84  DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 143

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G T ++D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++ 
Sbjct: 144 GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 200

Query: 132 RGGKVTISVQDSK 144
            GG++ +   D++
Sbjct: 201 YGGRIRVERNDAR 213


>gi|332560608|ref|ZP_08414926.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N]
 gi|332274406|gb|EGJ19722.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N]
          Length = 198

 Score = 84.7 bits (208), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 4/133 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL ALL SRICHD+ISPIGAI N +ELL   G I    M LI  S   A  R++F R+AF
Sbjct: 6   DLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVAF 65

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G T ++D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++ 
Sbjct: 66  GAT-ALDQRIGRPEILSIVSD-LTRGGRLQIDWEG-PTDLPRREVKLAFLLVLCLETAMA 122

Query: 132 RGGKVTISVQDSK 144
            GG++ +   D++
Sbjct: 123 YGGRIRVERSDAR 135


>gi|163731846|ref|ZP_02139293.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149]
 gi|161395300|gb|EDQ19622.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149]
          Length = 198

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 5/136 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           S+++L AL+ SRICHD+ISPIGAI+N LELLD   G     M LI+ S  +A  R+++ R
Sbjct: 4   SNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIRYFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG  G  + ++G  +I  +I+D +    R+ V+W G      R   ++     +    
Sbjct: 64  VAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRLAFLALLCVET 119

Query: 129 SLPRGGKVTISVQDSK 144
           ++P GG++ IS  D +
Sbjct: 120 AMPYGGRIEISQDDGQ 135


>gi|260574020|ref|ZP_05842025.1| conserved hypothetical protein [Rhodobacter sp. SW2]
 gi|259023486|gb|EEW26777.1| conserved hypothetical protein [Rhodobacter sp. SW2]
          Length = 197

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 14/191 (7%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFM 67
           +++ DL+ALL SRICHD+ISPIGAI N +ELL   G +    + LI  S  +A  R++F 
Sbjct: 1   MANPDLIALLGSRICHDLISPIGAIGNGVELLMMDGSLRGPEIALISESVANANARIRFF 60

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG +G  D  IG  ++  ++ D I    R+ + W     DL R   K++  L     
Sbjct: 61  RVAFGASGR-DQRIGRPEVMAILTD-ITRGGRLSIDWQSAG-DLPRAEVKLVFLLIQCLE 117

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFY 184
            ++  GG++T+       +     ++ G+ A+    PE +  + D +    +++  + F 
Sbjct: 118 TAMAYGGRITV------EQTGDGWRLTGSAAKLKVSPELWDILTDPDATVEVNAAQVHFA 171

Query: 185 YVIL-LAHENK 194
            V L LA + +
Sbjct: 172 LVPLELAQQGR 182


>gi|110679883|ref|YP_682890.1| hypothetical protein RD1_2657 [Roseobacter denitrificans OCh 114]
 gi|109455999|gb|ABG32204.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 198

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 6/135 (4%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           S+++L AL+ SRICHD+ISPIGAI+N LELLD   G     M LI+ S  +A  R+++ R
Sbjct: 4   SNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIRYFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG  G  + ++G  +I  +I+D +    R+ V+W G      R   ++     +    
Sbjct: 64  VAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRMAFLALLCVET 119

Query: 129 SLPRGGKVTISVQDS 143
           ++P GG++ IS QD 
Sbjct: 120 AMPYGGRIEIS-QDG 133


>gi|86138882|ref|ZP_01057454.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193]
 gi|85824529|gb|EAQ44732.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193]
          Length = 198

 Score = 81.3 bits (199), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 12/185 (6%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRL 69
           + +L AL+ SRICHD+ISP+GAI+N LELL   G +    ++LI  S ++A  R++F R+
Sbjct: 5   TANLAALIGSRICHDLISPVGAINNGLELLAMSGAMAGPELELISDSVLNANARIRFFRI 64

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128
           AFG  G  D  +G  +I  V++D I    R++  W   E    S  R   L  L +    
Sbjct: 65  AFGAAG--DQQMGRAEIVSVLDD-IGKAGRLKYQWNLAEGCSRSEVRMAFLAALCL--ET 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFYYVI 187
           +LP GG +++S  D K    +++   G            VD  +  +T+    +QF  + 
Sbjct: 120 ALPYGGLISVSCTDGK----WTVVGEGRKISIEAPLWGHVDTSDTSATLTPAQVQFAMLA 175

Query: 188 LLAHE 192
           + A E
Sbjct: 176 VAAQE 180


>gi|254464507|ref|ZP_05077918.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
 gi|206685415|gb|EDZ45897.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
          Length = 198

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 28/209 (13%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +L AL+ SRICHD+ISP+GAI+N LELL   G +    ++LI  S  +A  R++F R+AF
Sbjct: 7   NLAALVGSRICHDLISPVGAINNGLELLGMAGSMSGPELELISDSVANANARIRFFRVAF 66

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G  G  D  +   +I  ++ED I+   R++  W+  +   +R  A++ L   +    +LP
Sbjct: 67  GAAG--DQQMARAEIVSLLED-ISKGGRIKYQWSPLE-GCTRSEARLSLLAALCLETALP 122

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVIL 188
            GG V +   D K        + G  ++     E + ++  G   + I    +QF     
Sbjct: 123 YGGTVKVFCADGK------WTVMGEGSKLNVDDELWARVSGGTSNAEITPALVQFA---- 172

Query: 189 LAHENKIRLLPEIIDDHN--VVLSALLEK 215
                   LLPE   + N  V L   LEK
Sbjct: 173 --------LLPEAAKEANRTVRLEQNLEK 193


>gi|114766184|ref|ZP_01445184.1| hypothetical protein 1100011001298_R2601_22457 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541555|gb|EAU44598.1| hypothetical protein R2601_22457 [Roseovarius sp. HTCC2601]
          Length = 200

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 13/191 (6%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRL 69
           S  +  L+ SRICHD++SP+GAI N LEL+   G    E M LI  S  SA  R+   R+
Sbjct: 5   SARIAGLVGSRICHDLVSPVGAISNGLELIALAGQPGPEEMALISQSCSSATARINLFRM 64

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG   S D  IG  +  +++  + A   R+ + W     D  R+  ++ +   +   ++
Sbjct: 65  AFGAA-SADQQIGGAEARKLLAGYCA-GGRLSIDWL-PSGDAERQDMQLAMLAALCCESA 121

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYV 186
           LP GGKV ++      E+    ++ G   R       +  +  G +   +    + F  +
Sbjct: 122 LPLGGKVAVA------EDGGGWRVTGTGPRLNIEAAAWAMLSGGALPDDLPPARVHFALL 175

Query: 187 ILLAHENKIRL 197
             LA E   +L
Sbjct: 176 GALAPERGRKL 186


>gi|254477150|ref|ZP_05090536.1| conserved hypothetical protein [Ruegeria sp. R11]
 gi|214031393|gb|EEB72228.1| conserved hypothetical protein [Ruegeria sp. R11]
          Length = 198

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
            ++ + +L AL+ SRICHD+ISPIGAI+N LELL   G +    ++LI  S  +A  R++
Sbjct: 1   MSVDNANLAALVGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG   + +  I   ++  V+ED I+   R++  WT ++   +R   ++ L   + 
Sbjct: 61  FFRIAFG--AASEQQISRAEVVSVLED-ISKGGRLKYQWTPQE-PATRAEVRLALLAGLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
               LP GG V I   D K   I    K+N +     E + ++  G+  +T+    +QF
Sbjct: 117 LETGLPYGGNVNILCADGKWTVIGEGSKLNID----DELWARVSGGSSSATVTPALVQF 171


>gi|163736427|ref|ZP_02143846.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis
           BS107]
 gi|161390297|gb|EDQ14647.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis
           BS107]
          Length = 198

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 14/181 (7%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
            ++ + +L AL+ SRICHD+ISPIGAI+N LELL   G +    ++LI  S  +A  R++
Sbjct: 1   MSVDNANLAALIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG   + D  I   ++  V+ED I    R++  W  ++   SR   ++     + 
Sbjct: 61  FFRIAFG--AASDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIF---SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
               LP GG V I   D K   I     L I+ +L      + ++  G   +T+    +Q
Sbjct: 117 LETGLPYGGTVKILCADGKWTVIGEGSKLNIDDDL------WARVSGGTSSTTVTPALVQ 170

Query: 183 F 183
           F
Sbjct: 171 F 171


>gi|56696855|ref|YP_167218.1| hypothetical protein SPO1983 [Ruegeria pomeroyi DSS-3]
 gi|56678592|gb|AAV95258.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 198

 Score = 78.2 bits (191), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 8/200 (4%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMR 68
           S ++L +L+ SRICHD+ISPIGAI N LELLD  G +E   M+LI  S  +A  R++F R
Sbjct: 4   SGVNLASLIGSRICHDLISPIGAITNGLELLDMTGSVEGPEMELIADSVGNAGARIRFFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +A+G   S D ++G  ++  +++D +    R +  W   +  ++R   ++          
Sbjct: 64  IAYG--ASSDQMLGRAELVGLLDD-LNRSARAKADWAPTE-PVTRAEVRMAFLALQCCET 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           +LP GG V +   D + +          L+  P  +  + +      +    +QF  +  
Sbjct: 120 ALPFGGSVRM---DQQGDRWIVTAEAEKLSVDPALWEGLSNPAALKQVTPAQVQFALLPA 176

Query: 189 LAHENKIRLLPEIIDDHNVV 208
           +A +   R+  E  D   V+
Sbjct: 177 VAEDAGRRVTVETSDRQLVI 196


>gi|302382297|ref|YP_003818120.1| hypothetical protein Bresu_1185 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192925|gb|ADL00497.1| Protein of unknown function DUF2328 [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 222

 Score = 78.2 bits (191), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 6/180 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRL 69
           +L +L+ +++CHD ISP GAI + L+LL++   +   D+ + LI  S+   +  ++F R+
Sbjct: 19  ELASLIAAKLCHDFISPSGAIVSGLDLLNDPTAQDMRDDAISLITDSAKKMVALVQFCRV 78

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG   + +     G+  + + D +    R  + W  E  D S+ +A+ ++NL  +  A+
Sbjct: 79  AFGAATTAERFT--GEELRALVDGVTHGGRATLDWRLEVADFSKPQARAMVNLAYLTVAA 136

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           LP GG+  ++ +      +      G  AR  PE  T +    +   +    +Q Y++ L
Sbjct: 137 LPMGGQAVVTARTQGAGIVLEGLAEGARARLKPEAATGLAGQRLTEGLAGQWVQPYWLWL 196


>gi|84516141|ref|ZP_01003501.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53]
 gi|84509837|gb|EAQ06294.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53]
          Length = 196

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 93/200 (46%), Gaps = 13/200 (6%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL  L+ SRICHD+ISPIGAI N LELL    G     M LI  S  +A  R++F R+A+
Sbjct: 4   DLATLVGSRICHDLISPIGAIGNGLELLALTDGNPGAEMNLIADSVQNANARIRFYRIAY 63

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G   S + ++G  D+   I   +A   R    W   + D  R   +  L L     A++P
Sbjct: 64  G-AASTEQMLGSADVLSFIS-VLARGGRFTYFWQVAE-DRPRREVRCALLLLQCFEAAMP 120

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVIL 188
            GG + +SV D +        ++    RF   P  + ++  G+   T  +  +QF  +  
Sbjct: 121 VGGDIHVSVIDGR------WVLSAECLRFNIDPCLWDRLATGDTAFTYSAAQVQFALLPC 174

Query: 189 LAHENKIRLLPEIIDDHNVV 208
           +  E    L  ++  D  VV
Sbjct: 175 MLQEAGRALKVKMSSDRIVV 194


>gi|329891303|ref|ZP_08269646.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568]
 gi|328846604|gb|EGF96168.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568]
          Length = 252

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 6/189 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRL 69
           +L A + +++CHD ISP GA+ + L+LLD+   +   D+ + LIR S+   +  + F R+
Sbjct: 36  ELAAFIAAKLCHDFISPAGAVMSGLDLLDDPTAQDMRDDALGLIRQSAAKMVALVHFARV 95

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG   S +   G  ++  ++   +    R  + W   +   ++ +A+ L+NL  +  ++
Sbjct: 96  AFGAATSSEQFSG-AELHGLVAG-LTDGGRATLDWRVGEETFTKIQARALINLAYLTVSA 153

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           LP GG   ++V+   ++        G  AR  PE    +    +   +    IQ Y++ L
Sbjct: 154 LPMGGAAVVTVRREGDQLFLVGSAEGARARLKPEAVVGLKGERLTEGLAGQWIQPYWLWL 213

Query: 189 LAHENKIRL 197
            A E   RL
Sbjct: 214 TAREAGGRL 222


>gi|126729826|ref|ZP_01745639.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37]
 gi|126709945|gb|EBA08998.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37]
          Length = 201

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 16/200 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMR 68
           S  L AL+ SR+CHD+ISPIGAI N LEL+   G +     M LI+ S  SA  R++F R
Sbjct: 5   SATLAALVGSRLCHDLISPIGAIQNGLELIALSGADQSSPEMALIQESCDSAAARIRFFR 64

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILLNLFMVAH 127
           +AFG  G    ++   ++  ++   +    R++  W  GE  D SR   ++    F    
Sbjct: 65  VAFGAPGETQ-MMSRREVSAILSG-VTKGGRLKAEWVAGE--DQSRPEVQLCFLAFQCCE 120

Query: 128 ASLPRGGKVTISVQDSKNENIFS--LKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFY 184
           ++LP GG V I   D+    + +   +ING+       +   ++G     T  +  + F 
Sbjct: 121 SALPMGGTVRIE-NDAAGWTVRASGTRINGD-----RVYWDHINGAAPLETPPADKVHFA 174

Query: 185 YVILLAHENKIRLLPEIIDD 204
            + +LA     +LL  +  D
Sbjct: 175 LLPILAAARGRQLLATLTGD 194


>gi|255261517|ref|ZP_05340859.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255103852|gb|EET46526.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 204

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 4/135 (2%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMRL 69
           S  L AL+ SRICHD+ISP+GAI N +ELL+   + D   +QLI  S  +A  R+ F R+
Sbjct: 9   SAQLSALVGSRICHDLISPLGAISNGIELLEMSNLADTPEVQLIAESIANANARILFFRV 68

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG +      I   +I Q +   IA   RVQ  W     D SR   +IL  L +   ++
Sbjct: 69  AFGSSTETQR-INQSEINQTL-GAIAAGARVQYRWQAAG-DHSRPDVRILFLLILCIESA 125

Query: 130 LPRGGKVTISVQDSK 144
           +  GG++T+   D+K
Sbjct: 126 MAFGGEITVQSVDAK 140


>gi|310815613|ref|YP_003963577.1| hypothetical protein EIO_1132 [Ketogulonicigenium vulgare Y25]
 gi|308754348|gb|ADO42277.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 194

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 19/180 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           DL AL+ SRI HD+ +P+GAI N +ELL  V    E ++LI  S  SA  RL+ +RLAFG
Sbjct: 4   DLTALVTSRISHDLFNPLGAISNGVELLGLVAPSPE-LELIGDSVKSATARLQMLRLAFG 62

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILLNLFMVAH 127
             GS       G +     D+ A    V     G+        + R  AK+L  L +   
Sbjct: 63  AAGS-------GAV--TARDWAATLAGVSAGGRGKYKHNSPTPVPRNEAKVLALLGLCCD 113

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYV 186
           ASLP GG++  S   +     +S++ +G   RF       V G      ++   +QF  V
Sbjct: 114 ASLPYGGEIVFSPHGNGG---WSVQASGREVRFNAHLWGCVTGLAPREPVEPSHVQFLLV 170


>gi|288962381|ref|YP_003452676.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510]
 gi|288914647|dbj|BAI76132.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510]
          Length = 226

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 19/155 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLSSMSAIIRLKF 66
           LL S++CHD++SP+GAI N LEL++E+          G   E ++LI  SS  A  RL+ 
Sbjct: 18  LLASKLCHDLVSPVGAIRNGLELIEEMQEDEDGGAIGGFLGEAVKLIDHSSGQADRRLRV 77

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--DLSRER---AKILLN 121
            RLA+G  G      G GD       ++    R ++ W  E++  D++ +R    K+LLN
Sbjct: 78  FRLAYGQAGRDQK--GFGDARAAAAGYVE-GGRTRLDWP-ERVPHDMTAQRRGVVKLLLN 133

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           L M+A  +L  GG V+++    +     ++   G 
Sbjct: 134 LVMLADEALTHGGVVSVAADGDETAGGVTVTAAGR 168


>gi|329849905|ref|ZP_08264751.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19]
 gi|328841816|gb|EGF91386.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19]
          Length = 254

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRL 64
           + +S DL   + +++CHD ISP GAI + L+LLD+   +D   E + LI  S+   +  +
Sbjct: 44  DFTSHDLATQMVAKLCHDFISPAGAIMSGLDLLDDPSAQDMRQEALNLIAASAKKMVTLV 103

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            F R+AFG + S ++  G G + +++ D F  +  ++  +  G  I   +  A+ LLNL 
Sbjct: 104 HFARVAFGASNSAEAFSG-GQLNKILGDVFSTMRAQLDFAIDGNLI-FPKAAARALLNLG 161

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           ++A  SLP GG   +  + S +      +  G  AR   + T+ + G
Sbjct: 162 LIAGNSLPTGGTARLEARFSDDGIRLIAESRGPRARLKAEATEGLKG 208


>gi|254461651|ref|ZP_05075067.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206678240|gb|EDZ42727.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 204

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLA 70
           +   AL+ +RICHD+ISPIGAI+N +ELL   G  +   ++LI  S  +A  R++F R+A
Sbjct: 6   LQFSALVGARICHDLISPIGAINNGMELLSMSGAPQSPEIELIAQSVDAANARIRFFRIA 65

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           +G T S +  +G  +I  ++ DF     R+ ++W   + D++R   +++      A  +L
Sbjct: 66  YGAT-STEQFLGRSEITSILRDFTK-GSRLVLNWHPLE-DVTRSEVQLVFLAIQCAEQAL 122

Query: 131 PRGGKVTI 138
           P GG V I
Sbjct: 123 PYGGHVEI 130


>gi|99081047|ref|YP_613201.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040]
 gi|99037327|gb|ABF63939.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040]
          Length = 198

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 7/128 (5%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +L AL+ SRICHD+ISP+GAI+N LELL     +E   ++LI  S  +A  R++F R+AF
Sbjct: 7   NLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAF 66

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFMVAHASL 130
           G  G  +  +G  +I  V+ D ++   R++ +W+ +     R+ R   L  L +   ++L
Sbjct: 67  GAAGEQE--LGRMEIMSVLSD-VSKGGRIKYNWSSQDSAARRDVRMAFLAGLCL--ESAL 121

Query: 131 PRGGKVTI 138
           P GG V I
Sbjct: 122 PYGGTVQI 129


>gi|259418910|ref|ZP_05742827.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345132|gb|EEW56986.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 198

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 7/128 (5%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +L AL+ SRICHD+ISP+GAI+N LELL     +E   ++LI  S  +A  R++F R+AF
Sbjct: 7   NLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIRFFRVAF 66

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFMVAHASL 130
           G  G  +  +G  +I  V+ D ++   R++ +W+ ++    R+ R   L  L +   ++L
Sbjct: 67  GSAGEQE--LGRMEIMSVLGD-VSKGGRIKYNWSSQEAAARRDVRMAFLAGLCL--ESAL 121

Query: 131 PRGGKVTI 138
           P GG + I
Sbjct: 122 PYGGTIQI 129


>gi|163741038|ref|ZP_02148430.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10]
 gi|161385391|gb|EDQ09768.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10]
          Length = 188

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 14/171 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++ SRICHD+ISPIGAI+N LELL   G +    ++LI  S  +A  R++F R+AFG   
Sbjct: 1   MIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIRFFRIAFG--A 58

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           + D  I   ++  V+ED I    R++  W  ++   SR   ++     +     LP GG 
Sbjct: 59  ASDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALCLETGLPYGGT 116

Query: 136 VTISVQDSKNENIF---SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
           V I   D K   I     L I+ +L      + ++  G   +T+    +QF
Sbjct: 117 VKILCADGKWTVIGEGSKLNIDDDL------WARVSGGTSSATVTPALVQF 161


>gi|114797307|ref|YP_759367.1| hypothetical protein HNE_0638 [Hyphomonas neptunium ATCC 15444]
 gi|114737481|gb|ABI75606.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 215

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 4/166 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSMSAIIRL 64
           NL      A + +R+CHDI+SP   +  SLE+LD  G  +E  Q    +R  +      L
Sbjct: 2   NLDHARFAAFISARLCHDIVSPAATMSLSLEMLDSPGSAEEKEQSERTLREGAHGVTATL 61

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F+R AFG  G       +   +++ +D++   K   + W      L+   A++++NL M
Sbjct: 62  QFLRYAFGSMGLQPGTADVHQFKKLTDDYLRFQK-PSIDWDLSTPVLTFAEARLIMNLVM 120

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           V   +  RGG + ++V++       +L   G+  +  E   + + G
Sbjct: 121 VCLTATVRGGIIHVNVREDNGAKTLTLTCKGDRLKLKEDVVKALKG 166


>gi|254488919|ref|ZP_05102124.1| conserved hypothetical protein [Roseobacter sp. GAI101]
 gi|214045788|gb|EEB86426.1| conserved hypothetical protein [Roseobacter sp. GAI101]
          Length = 198

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 9/138 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           S ++   L+ SRICHD+ISPIGAI+N LEL+    G     M+LI  S  SA  R++F R
Sbjct: 4   SDLEFATLIGSRICHDLISPIGAINNGLELVSMSGGGSGPEMELIGDSVGSASARIRFFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL--FMVA 126
           +AFG  G  D  +G  ++  ++ D    + R  V+W    I  ++ R+ + L     +  
Sbjct: 64  IAFGAAG--DQSLGSAEVTSILRDLYR-ESRSSVAW---NIPDAQPRSDVRLAFLALLCL 117

Query: 127 HASLPRGGKVTISVQDSK 144
              +P GG V +    +K
Sbjct: 118 ETGMPYGGAVVVERDGAK 135


>gi|295691366|ref|YP_003595059.1| hypothetical protein Cseg_4029 [Caulobacter segnis ATCC 21756]
 gi|295433269|gb|ADG12441.1| Protein of unknown function DUF2328 [Caulobacter segnis ATCC 21756]
          Length = 229

 Score = 72.0 bits (175), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 6/207 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRL 64
           ++   D  A+L +R+CHD ISP  AI + L+LL++   +D   + M LI  S+      L
Sbjct: 21  DVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPAAQDMREDAMSLIASSARKLADLL 80

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F R+AFG + S ++     ++E++ +   A   R  ++W  E   +++  A+ +LN+  
Sbjct: 81  QFTRVAFGASASAENFDSR-ELEKLAQGVFA-HVRPTLNWAIEPQAMNKPSARAVLNIAQ 138

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQF 183
           +A ++LP GG  T+   ++        +  G  AR  PE    +    +   +    +Q 
Sbjct: 139 IAASALPAGGVATVKGVNADGRFSIIAEAIGPRARLRPEVLAGLKGEPLAEGLGGPWVQA 198

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLS 210
            Y+  L      ++  E+ +D   V +
Sbjct: 199 AYLNALVRAAGGQIAAEVGEDRASVAA 225


>gi|126726414|ref|ZP_01742255.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704277|gb|EBA03369.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium
           HTCC2150]
          Length = 200

 Score = 72.0 bits (175), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 21/196 (10%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L AL+ SRICHD+I+P+GAI N LELL   G +    + LI  S  +A  R+KF+R AFG
Sbjct: 8   LCALVSSRICHDVINPLGAIGNGLELLSLGGDLSGPEIDLIDASHKNAEARVKFLRHAFG 67

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
            TG + + I   D+E+  +++ A   +  R++++ +     L R   K      M    +
Sbjct: 68  ETG-IGATINGQDVEKTAQNYCATSNIKARLKLANS-----LPRPEVKRTYLAIMCMMQT 121

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVES-TIDSHDIQFYY 185
           L  GG + +S  +S        KI GN  R     + +T ++  +  +  I++ +IQF  
Sbjct: 122 LSFGGDIHVSQSNS------GWKIVGNAERRRNIKDLWTALLINDFSTLEIEASNIQFVL 175

Query: 186 VIL-LAHENKIRLLPE 200
           + L L+  +KI +L E
Sbjct: 176 LSLELSKAHKIPMLQE 191


>gi|83953645|ref|ZP_00962366.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1]
 gi|83841590|gb|EAP80759.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1]
          Length = 200

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL AL+ SRICHD+ISP+GAI+N LELL   G+     + LI  S  +A  RL+F R+AF
Sbjct: 7   DLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFRVAF 66

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G  G     +   +   ++ D  A  K  QVSW  + +   R   +++    +     +P
Sbjct: 67  G-AGDAQP-VPAQETSGILRDLYAQSK-WQVSWP-DGVAAPRNALRMVFLSLLCLETGMP 122

Query: 132 RGGKVTISVQDS 143
            GG++TI  +D+
Sbjct: 123 YGGQITIDHRDA 134


>gi|119387209|ref|YP_918264.1| hypothetical protein Pden_4504 [Paracoccus denitrificans PD1222]
 gi|119377804|gb|ABL72568.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
          Length = 218

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 8/130 (6%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMR 68
           L AL+ SR+CHDI+SP+GAI N LELL   G    +     MQLI  S  +A  R+++ R
Sbjct: 21  LAALVGSRLCHDIVSPLGAIGNGLELLQLSGAWPGIDASPEMQLIAESVEAARARVRWFR 80

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG+  + D  + + ++  +  D +    R+++    E  DL R  A+++L   M    
Sbjct: 81  VAFGHA-APDQRLSMAELAALFAD-VEKGGRIRLRLEAEG-DLPRPEARMILLALMCLET 137

Query: 129 SLPRGGKVTI 138
           ++P GG V +
Sbjct: 138 AMPWGGSVLV 147


>gi|103487226|ref|YP_616787.1| hypothetical protein Sala_1741 [Sphingopyxis alaskensis RB2256]
 gi|98977303|gb|ABF53454.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 214

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIE--DEVMQLIRLSSMSAIIRLKFMR 68
           +D  ++L SR+CHD++SP+GA  N LELL DE   E     ++L+  S+ ++  +LKF R
Sbjct: 6   VDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANKLKFFR 65

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           LAFG  G    L+   + +  IE  I  D+ + ++W      L +   KI+LNL ++   
Sbjct: 66  LAFGSAGGFGELVPPEEAKSAIEGIIG-DRAITLNWMIGADPLPKPAVKIILNLALLLVD 124

Query: 129 SLPRGGKVTISVQDSKN 145
           +L RGG++ +  +   +
Sbjct: 125 ALVRGGRLDVGCEKQAD 141


>gi|167644070|ref|YP_001681733.1| hypothetical protein Caul_0097 [Caulobacter sp. K31]
 gi|167346500|gb|ABZ69235.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 230

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 75/135 (55%), Gaps = 5/135 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIR 63
            +++  D  AL+ +R+CHD ISP  AI + L+LL++   +D   + M LI  S+      
Sbjct: 21  LDVNGPDFAALVAARLCHDFISPASAIVSGLDLLEDPSAQDMREDAMSLISSSARKLADL 80

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG + S ++     ++E++ +   A   R  + W      +++  A+ +LN+ 
Sbjct: 81  LQFTRVAFGASASAENFDSR-ELEKLAQGVFA-HVRPTMDWAIPPSTMNKASARAILNIA 138

Query: 124 MVAHASLPRGGKVTI 138
            +A ++LP GGK T+
Sbjct: 139 QIAASALPAGGKATL 153


>gi|84687193|ref|ZP_01015074.1| hypothetical protein 1099457000248_RB2654_04526 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664781|gb|EAQ11264.1| hypothetical protein RB2654_04526 [Rhodobacterales bacterium
           HTCC2654]
          Length = 198

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 16/154 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMR 68
            + DLVAL+ SRICHD++SP+GAI N +EL+   G E+   M L+  S ++A  R++F R
Sbjct: 8   PAPDLVALVGSRICHDLVSPLGAIGNGIELMTLTGGEETPEMALVNESLVNARGRIRFFR 67

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--DLSRERAKILLNLFMVA 126
           +AFG   S  +++  GD+ + +     ++ +  V W   +I  D++R  AK+ L      
Sbjct: 68  IAFGAANS-GAVVRAGDLAEAV---AGIETKAVVEW---RIPGDMARTDAKLALLALNCL 120

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +++P GG++++        +   L + G   RF
Sbjct: 121 ASAMPYGGRISV------ERDAGGLVVTGRAERF 148


>gi|83942425|ref|ZP_00954886.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36]
 gi|83846518|gb|EAP84394.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36]
          Length = 200

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL AL+ SRICHD+ISP+GAI+N LELL   G+     + LI  S  +A  RL+F R+AF
Sbjct: 7   DLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFRVAF 66

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G +G     +   +   ++ D  A  K  QVSW  + +   R   +++    +     +P
Sbjct: 67  G-SGDAQP-VPAQETSGILRDLYAQSK-WQVSWP-DGVAAPRNALRMVFLSLLCLETGMP 122

Query: 132 RGGKVTISVQDS 143
            GG++ I  +D+
Sbjct: 123 YGGQINIDHRDA 134


>gi|254292520|ref|YP_003058543.1| hypothetical protein Hbal_0144 [Hirschia baltica ATCC 49814]
 gi|254041051|gb|ACT57846.1| conserved hypothetical protein [Hirschia baltica ATCC 49814]
          Length = 206

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 2/185 (1%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           + +  L ALL S ICH+++SP+ +     + L++  + + V  LIR SS +   +L F+R
Sbjct: 1   MEASKLAALLASHICHELVSPVSSFKLVQDSLNDPDMREYVEDLIRSSSETLEYKLTFLR 60

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
            A G  G  D    L +   + ++++    R  + W       +  + ++++N+ M+A +
Sbjct: 61  YALGSVGMQDGYADLHEARSLCQNYMK-GFRADLEWNDTPEITNFAQVRLVMNMMMIATS 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYVI 187
           ++PRGG ++++ +   ++ I  ++  G      E+    ++G   E    + +IQ Y+  
Sbjct: 120 AMPRGGMISVTSEKVGDKVILKVEGKGPRVVLNEERRDSLNGVEPEGGWIAKNIQPYFAR 179

Query: 188 LLAHE 192
             A E
Sbjct: 180 ECARE 184


>gi|84501044|ref|ZP_00999279.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597]
 gi|84391111|gb|EAQ03529.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597]
          Length = 201

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 9/130 (6%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L AL+ SRICHD+ISP+GAI N +ELL    + G E   + LI  S  +A  R++F+R+A
Sbjct: 8   LAALIGSRICHDLISPVGAIQNGVELLAMERQAGPE---LALIEDSVNNASARIRFLRIA 64

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           FG  G+   +    +I   + D I    R++  W   +    RE  ++ L + M   +++
Sbjct: 65  FGLAGAGQPM-SPQEICGTLSD-IGRAGRIRHDWIPVETCTRRETQEVFLAM-MCLESAM 121

Query: 131 PRGGKVTISV 140
           PRGG ++++ 
Sbjct: 122 PRGGTISVAT 131


>gi|126736805|ref|ZP_01752542.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2]
 gi|126713706|gb|EBA10580.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2]
          Length = 196

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%), Gaps = 29/203 (14%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           DL AL+ SRICHD+ISPIGAI N +ELL     + G E   M+LI  S  +A  R+++ R
Sbjct: 4   DLAALVGSRICHDLISPIGAIGNGVELLALTDGDTGAE---MELINESVQNASARIRYFR 60

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA-- 126
           +A+G   S + ++   +I  ++    A   R+   W   KID  + R  +   L  +   
Sbjct: 61  IAYG-AASEEQMVSRSEILSILAA-TARGGRINYIW---KIDGDQPRRLVRCALLTLQAI 115

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ASLP GG + I    ++ E ++ ++  G       + T  +D  + + + S  + F+Y 
Sbjct: 116 EASLPLGGDIHI----TQEEEMWVMRGEG------PRLT--LDKELWNNLLSPQVGFHYT 163

Query: 187 ILLAHENKIRLLPEIIDDHNVVL 209
              A   +  LLP ++ +   VL
Sbjct: 164 ---AAHVQFALLPGVLAEAGRVL 183


>gi|209965054|ref|YP_002297969.1| hypothetical protein RC1_1759 [Rhodospirillum centenum SW]
 gi|209958520|gb|ACI99156.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 212

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 10/95 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           V LL SRICHD++SP+GAI+N +EL+DE+G+    E + LI  S+ +A  RL+  R AFG
Sbjct: 13  VELLVSRICHDLVSPVGAINNGVELIDEMGLGAGAEALTLIADSAEAAARRLRLFRFAFG 72

Query: 73  YTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
             G  D L    D  Q    +E +     RV++ W
Sbjct: 73  AAGGQDGL----DPAQARLTLEGWF-RGGRVRIDW 102


>gi|85702935|ref|ZP_01034039.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217]
 gi|85671863|gb|EAQ26720.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217]
          Length = 199

 Score = 68.9 bits (167), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 12/134 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRL 69
           S  L AL+ SRICHD++SP+GAI N LELL   G+ +   + LI  S+ +A  R++F RL
Sbjct: 5   SQPLAALIASRICHDLVSPLGAISNGLELLHLSGVPQSPELTLITSSATNATARIRFFRL 64

Query: 70  AFGYTGSVDSLIG--LGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           AFG      S+    L DI     +E  I +D R+         D+    A+ LL   + 
Sbjct: 65  AFGQADKGQSIHAKDLCDILTAVHVEGRITLDLRL-------SDDIPHPMAQALLLTILC 117

Query: 126 AHASLPRGGKVTIS 139
              ++P GG + +S
Sbjct: 118 VEQAMPYGGLLHVS 131


>gi|315497651|ref|YP_004086455.1| hypothetical protein Astex_0617 [Asticcacaulis excentricus CB 48]
 gi|315415663|gb|ADU12304.1| Protein of unknown function DUF2328 [Asticcacaulis excentricus CB
           48]
          Length = 234

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 87/178 (48%), Gaps = 5/178 (2%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRL 69
           +L   L +++CHD ISP GAI + L+LL +   +   D+ + LI+ S+   +  + F R+
Sbjct: 29  ELATQLVAKLCHDFISPTGAIISGLDLLSDPSAQDMRDDAVNLIQASATKLVTLVHFARV 88

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG   S ++     ++ +++ D  +  +        +++   +  A+ L+NL  +A  +
Sbjct: 89  AFGAATSAEAF-SAKELNKILSDVFSTMRATLDFDVADEVVFEKPAARALMNLGYIAGNA 147

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYV 186
           LP GG  T+  +++      + + NG  AR  PE    +    +   +    IQ +++
Sbjct: 148 LPTGGTATLRREETDEAITLTAQSNGPRARLKPEAVEGLNGQPLSDGLSGQWIQPFWL 205


>gi|16127700|ref|NP_422264.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15]
 gi|221236520|ref|YP_002518957.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000]
 gi|13425192|gb|AAK25432.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15]
 gi|148839268|tpg|DAA06031.1| TPA_exp: ChpT [Caulobacter vibrioides]
 gi|220965693|gb|ACL97049.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000]
          Length = 253

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRL 64
           ++   D  A+L +R+CHD ISP  AI + L+LL++   +   D+ M LI  S+      L
Sbjct: 45  DVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKLADLL 104

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F R+AFG + S ++     ++E++ +   A   R  + W  E   +++  ++ +LN+  
Sbjct: 105 QFTRVAFGASASAENFDSR-ELEKLAQGVFA-HVRPTLDWQIEPQAMNKPSSRAVLNIAQ 162

Query: 125 VAHASLPRGGKVTI 138
           +A ++LP GG  T+
Sbjct: 163 IAASALPAGGVATV 176


>gi|159044019|ref|YP_001532813.1| hypothetical protein Dshi_1470 [Dinoroseobacter shibae DFL 12]
 gi|157911779|gb|ABV93212.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12]
          Length = 204

 Score = 68.6 bits (166), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 5/125 (4%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL AL+ SRICHD+ISP+GAI N LELL   G  E   M LI  S  SA  R++F R+A+
Sbjct: 12  DLSALIGSRICHDLISPLGAIGNGLELLQMSGASESPEMTLIADSVTSANARIRFFRIAY 71

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G     + +I   ++   +        R+Q+ W  E  D+ R  AK           ++P
Sbjct: 72  G-DAVQNQMIKGAELRGALHGSYQ-GSRLQIDWQPE--DMLRSTAKRGFLALQCLETAMP 127

Query: 132 RGGKV 136
            GG++
Sbjct: 128 YGGRI 132


>gi|89069452|ref|ZP_01156802.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516]
 gi|89044933|gb|EAR51020.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516]
          Length = 198

 Score = 65.5 bits (158), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 12/170 (7%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L+ SRICHD+ISP+GAI N LELL      + +  + LI  S  +A  RL+F R AFG  
Sbjct: 11  LVASRICHDVISPLGAIGNGLELLTLANPDLPEAELALIGESVAAAQARLQFFRFAFGS- 69

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            + D+ +   ++ +V+ D +A     +  W   + D  R   +      +    +L RG 
Sbjct: 70  -AADTPVAGREVVRVL-DAMAASGFARCRWEVAE-DPPRGLVRCAFLALLCVETALGRGA 126

Query: 135 KVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQF 183
            + +SV+D +    +S+   G +  R PE +  +  G+    + +  +QF
Sbjct: 127 ALRVSVRDGR----WSVVGEGPVRHRDPEVWAALAGGD-PGALTAAQVQF 171


>gi|149915194|ref|ZP_01903722.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b]
 gi|149810915|gb|EDM70754.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b]
          Length = 199

 Score = 65.1 bits (157), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 4/129 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRL 69
           S ++ AL  SRICHD+ISPIGA+ N +EL+   G  D   M L+  S+  A  R++F RL
Sbjct: 5   SHNIAALTASRICHDLISPIGAVANGMELMQFAGASDGPEMALVSESAAHAKARIRFFRL 64

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
            FG   S   ++   ++ +++ + I    R+++  T ++  L R  A+ +L   + A   
Sbjct: 65  TFGIA-SDSQMVAAEEVNEIL-NAIYGGTRIEIETTLDR-SLPRAMAQAVLLAVLCAEHG 121

Query: 130 LPRGGKVTI 138
           L  GG++ +
Sbjct: 122 LGVGGQLRV 130


>gi|83952102|ref|ZP_00960834.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM]
 gi|83837108|gb|EAP76405.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM]
          Length = 179

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 26  IISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG 84
           +ISP+GAI+N LELLD     +     LIR S+  A  R++F RLAFG     D  +   
Sbjct: 1   MISPVGAINNGLELLDLAHSAQGAEFTLIRDSAAQATSRIRFFRLAFG-AAHKDQAVSAP 59

Query: 85  DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK 144
           ++  ++        R  V+W  E+  L R RAK      +     LP GG++ ++   + 
Sbjct: 60  EMASLLRHCFPGPLR--VTWEVEET-LIRPRAKAACLAILCLDRCLPYGGEIRVAPHGAA 116

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
                ++       R  + +  ++DG  +   +   ++QF  +   A  N + L  +  D
Sbjct: 117 ----LAITTQSEGLRAHDPYWSLLDGRPIPEDLPPAEVQFALLPHTAQRNDLNLSAQHTD 172

Query: 204 DH 205
           DH
Sbjct: 173 DH 174


>gi|254418211|ref|ZP_05031935.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3]
 gi|196184388|gb|EDX79364.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3]
          Length = 236

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 13/208 (6%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKFM 67
            ++L   + +++CHD ISP GAI + L+L+ +   +D   + + LI  S+   +  + F 
Sbjct: 31  GIELATYVAAKLCHDFISPSGAIVSGLDLMRDPSAQDMREDALSLIEQSARKMVALVHFA 90

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG   + +      +++ ++        R  + W   + + S+ +A+ L NL  +  
Sbjct: 91  RVAFGAATTSERFTAR-ELQSLVTGLTE-GGRASLDWRIHEGEFSKPQARALTNLAYLTV 148

Query: 128 ASLPRGGKVTISVQDSKNENIFSL---KINGNLARF-PEKFTQIVDGNVESTIDSHDIQF 183
            +LP GG   I    S+ EN F        G  AR  PE  T +    +   +    IQ 
Sbjct: 149 GALPMGGDAVI---QSRVENGFLFIEGFAEGARARLKPEAVTGLAGERLIEGLAGQWIQP 205

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSA 211
           Y++ L   E    L    ++D  VVL A
Sbjct: 206 YWLWLTVVEAGGSLH-VTVEDGRVVLVA 232


>gi|149202794|ref|ZP_01879766.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035]
 gi|149144076|gb|EDM32110.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035]
          Length = 199

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 8/129 (6%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L AL+ SRICHD++SP+GAI N LEL+   G +E   M LI  S+  A+ R++  RLAFG
Sbjct: 8   LGALIASRICHDLVSPLGAIGNGLELMGLSGTMEGPEMALIAASAAQALARVRLFRLAFG 67

Query: 73  YT--GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
                 V     L DI   +     +   +Q++       L R  A+ILL   +    +L
Sbjct: 68  QAEDDHVTRAEELRDILGTLHAGGRITLTLQIT-----APLPRPMAQILLLGLLCVEQAL 122

Query: 131 PRGGKVTIS 139
           P+GG++ +S
Sbjct: 123 PQGGQLAVS 131


>gi|304321420|ref|YP_003855063.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis
           HTCC2503]
 gi|303300322|gb|ADM09921.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis
           HTCC2503]
          Length = 208

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 88/197 (44%), Gaps = 7/197 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           +L+ SR+CHD+   +GAI   LE+ ++   E      Q++  S+  A+  +K  RLA+G 
Sbjct: 13  SLMSSRLCHDLAGVVGAISAGLEMSEDEDPEMASHAKQVVTESTDKALAIVKLARLAYGS 72

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
           +G  +  + + +  +  + F A     ++ W  E+  + + + + +LN+ +V   ++PR 
Sbjct: 73  SGGFEGDLDMNEAREAAKGFFA-HAEAELVWDLEEYAVPKWQGRAMLNVLIVMERAVPRS 131

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193
                +V+ S+     +    G   +  +       G  +  ++  ++  Y   LLA   
Sbjct: 132 ---PSTVRLSRVNGHLTASATGKKVKAKDPLLGAFSGQSDD-LEPKEMPAYLAYLLAQSG 187

Query: 194 KIRLLPEIIDDHNVVLS 210
             R     + D  + ++
Sbjct: 188 GARFDTHFVLDEELTVT 204


>gi|89054929|ref|YP_510380.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1]
 gi|88864478|gb|ABD55355.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1]
          Length = 180

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 30  IGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88
           +GAI N +ELL+  G  D   + LIR +  +A  R++  RLAFG   S   +  L + + 
Sbjct: 1   MGAIGNGVELLEMTGKADGPEVDLIRDAVRAAEARIRLFRLAFGGASS-GQVTSLREAKT 59

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
           V+E +     RV V W     D SR+  K+ L + + A  +LP GG V I 
Sbjct: 60  VVEGYFH-QSRVAVVWMANS-DRSRQETKMALLMLLCAETALPMGGTVRIG 108


>gi|218461320|ref|ZP_03501411.1| hypothetical protein RetlK5_18197 [Rhizobium etli Kim 5]
          Length = 73

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197
           F+L   G + R P KF +I  G +E  ID+H IQ YY +LLA E  + L
Sbjct: 7   FTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTL 55


>gi|218660684|ref|ZP_03516614.1| hypothetical protein RetlI_14387 [Rhizobium etli IE4771]
          Length = 76

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%)

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197
           F+L   G + R P KF +I  G +E  ID+H IQ YY +LLA E  + L
Sbjct: 10  FTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTL 58


>gi|83591859|ref|YP_425611.1| hypothetical protein Rru_A0520 [Rhodospirillum rubrum ATCC 11170]
 gi|83574773|gb|ABC21324.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 224

 Score = 52.8 bits (125), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 9/181 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           +DL  +LC+R+CHD+   IGA++    L   +    + E + L+  S+  A +RLK +R+
Sbjct: 29  LDLALMLCTRLCHDLAGSIGAVNTGAELLEEEGEAFDPETLALLADSARGAALRLKVLRM 88

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           A G          L +  + +   +A   R          D      ++L+NL MVA   
Sbjct: 89  AMGLVRGRQPT--LAEAAEGLGGLLAASGRRFALGDPAMGDPGAPTVQLLVNLAMVAADV 146

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            P+  ++T+       E+ + +   G        + Q + G  +   D   +Q +    L
Sbjct: 147 WPKAAEITLGA----TEDGYGVWARGAAGPPSASWDQALAGG-DDVPDPRTVQAWLTKRL 201

Query: 190 A 190
           A
Sbjct: 202 A 202


>gi|144897198|emb|CAM74062.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 217

 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKF 66
           N  ++ L  LLC+R+CHD+  P+GA     EL  ++G  D E + ++  S+  A  RL+ 
Sbjct: 8   NTDTLMLAELLCARVCHDLAGPVGATAAGAELFQDLGGGDPETLAMVSTSAAGAAARLRL 67

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLN 121
           +R A G   S+    GL  +  + E  +          +   WT     +   RA++LLN
Sbjct: 68  LRAALGPAASMPQ--GLSALRTMTEAHLNSLASTAAPTIACRWTDCPDQIDGPRARLLLN 125

Query: 122 LFMVAHASLPRGGKVTISVQDS 143
           L ++   +LPRGG +  ++ D 
Sbjct: 126 LMLLGRDALPRGGALDFALTDG 147


>gi|254449745|ref|ZP_05063182.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198264151|gb|EDY88421.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 176

 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 19/182 (10%)

Query: 30  IGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88
           +GAI N +ELL   G+     M L+  S  +A  ++KF+R+AFG   + D  +  G+I  
Sbjct: 1   MGAIGNGIELLGLAGVAAGPKMALVSESVENATAKIKFLRMAFGEA-AQDQTVSRGEILS 59

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
            +E  +A   R+  SW     D  R   +  L   M    +LP GG + I++   +N   
Sbjct: 60  TLE-AMARGGRLSYSWNVAG-DPQRLEVRTALISVMCLETALPMGGDIEITLD--QNRWT 115

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            S K +  L   P+ +  +  G  ++ + +  + F             LLPE+  +    
Sbjct: 116 ISAKHD-RLTLDPDLWVPLSKGAYQNDLSASKVHF------------GLLPEMAIEAGRT 162

Query: 209 LS 210
           LS
Sbjct: 163 LS 164


>gi|254440242|ref|ZP_05053736.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307]
 gi|198255688|gb|EDY80002.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307]
          Length = 55

 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGI 45
          +L AL+ SRICHD+I+P+GAI N +ELL   G+
Sbjct: 3  NLNALIGSRICHDLINPLGAIGNGIELLGLAGV 35


>gi|126737744|ref|ZP_01753474.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6]
 gi|126721137|gb|EBA17841.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6]
          Length = 163

 Score = 42.7 bits (99), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           ++   ++LI  S ++A  R++F R+AFG  G  +  +G  +I  ++ D ++   R+  SW
Sbjct: 5   VDGPELELISDSVLNANARIRFFRVAFGAAG--EQQMGRAEIISILAD-MSKAGRMSYSW 61

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           T  +   SRE  +++    +   ++LP GG+VT+          +S+   G      E  
Sbjct: 62  TPLE-GCSREEVRMVFLALLCLESALPYGGQVTMLCSGQS----WSITGEGTKLNLDESL 116

Query: 165 TQIVDGNVE-STIDSHDIQFYYVILLAHENKIRL 197
              +DG+ + + I    +QF  + + A +   R+
Sbjct: 117 WGHLDGSDDAAAITPALVQFAMLPVAAKQAGRRI 150


>gi|73667278|ref|YP_303294.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake]
 gi|72394419|gb|AAZ68696.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake]
          Length = 210

 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 9/136 (6%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           V L+ +R+ HD+   +GAI N +E L D+ G+ +++M L+  ++   + + K ++ A+  
Sbjct: 10  VELVSARLLHDLAGSVGAIVNYIECLSDDEGLCEDMMSLLSDAANDVMNKFKLLKQAYSI 69

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLFMVAHAS 129
           +   D     G  +  I++++   K++ + W  +     ++L  +  K+L N+ M+    
Sbjct: 70  S---DDNGDFGVTKHNIKNYLK-RKKILLEWDVDVQLFDVELVEKVNKLLTNMVMILMYF 125

Query: 130 LPRGGKVTISVQDSKN 145
           +  G KV +++  S +
Sbjct: 126 MINGSKVKVTLSKSSD 141


>gi|196233248|ref|ZP_03132094.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196222719|gb|EDY17243.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 720

 Score = 41.2 bits (95), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK-- 65
           ++ V  L   + HD  + + AI    ELL+      G   E  + IR++   A    K  
Sbjct: 337 LEAVGRLAGGVAHDFNNLLTAIMGYSELLEAKLERDGASQEFARQIRITGEKAAALTKQL 396

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117
             F R        +D  + +GD+E++++  I    R+Q+  T  +   +R RA      +
Sbjct: 397 LAFSRRQLLSPKVLDLNVVVGDLEKLLQRIIGEHIRIQLQTTTVE---ARVRADPGQLEQ 453

Query: 118 ILLNLFMVAHASLPRGGKVTISVQ 141
           ++LNL + A  ++PRGG +TIS +
Sbjct: 454 VILNLGVNARDAMPRGGTLTISTE 477


>gi|68171194|ref|ZP_00544600.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658030|ref|YP_507163.1| hypothetical protein ECH_0343 [Ehrlichia chaffeensis str. Arkansas]
 gi|67999388|gb|EAM86031.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599487|gb|ABD44956.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 210

 Score = 41.2 bits (95), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 95/201 (47%), Gaps = 21/201 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + L+ +R+ HD+   +GAI N +E L E   + ++++ L+  ++   + + K ++ A+  
Sbjct: 10  IELVSARLLHDLAGSVGAIVNYIECLSEDESVSEDMVPLLSDAANDVMNKFKLLKQAYSI 69

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLFMVAHAS 129
           +   D        E  I++++   K++ + W        ++L  +  K+L+N+ M+    
Sbjct: 70  S---DDNGDFNTTEHNIKNYLK-RKKIVLEWDINAQIFDVELVEKINKLLINVTMILMFF 125

Query: 130 LPRGGKVTISVQDSKNENI------FSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           +  G KV + +  S N +       F+ KI        E    I+DG++    +++ ++Q
Sbjct: 126 MINGTKVKVVLSKSNNNDFLIEIIAFAQKI-----EIHESIQSILDGDMFNQELNTKNVQ 180

Query: 183 FYYVILLAHENKIRLLPEIID 203
             ++++L      ++  EI D
Sbjct: 181 VNFLMMLLKSYNAKMTYEIQD 201


>gi|57239385|ref|YP_180521.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579353|ref|YP_197565.1| hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617407|ref|YP_196606.1| hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str.
           Gardel]
 gi|57161464|emb|CAH58389.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417019|emb|CAI28132.1| Hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417979|emb|CAI27183.1| Hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 212

 Score = 40.8 bits (94), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 17/197 (8%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + L+ +R+ HD+   +GAI N +E L D+  +   +M L  LS  S  +  KF  L   Y
Sbjct: 10  IELISARLLHDLAGSVGAIVNYIECLGDDESLSGSMMPL--LSDASNDVMNKFKLLKQAY 67

Query: 74  TGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLFMVA 126
           + S D+    GD       IE+++   K+V + W         +L  +  K+L N+ MV 
Sbjct: 68  SISDDN----GDFNSTKCNIENYLT-RKKVILEWNVNVQIFDAELIEKINKLLTNMVMVL 122

Query: 127 HASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVEST-IDSHDIQFY 184
              +  G +V I +   S    +  +  N  +    E    I++G++ S  + + ++Q  
Sbjct: 123 MLFVINGNRVKIMLSSMSDGHLLIEVIANAQIIEMHESIKSILNGDITSVELTTRNVQVS 182

Query: 185 YVILLAHENKIRLLPEI 201
           +++LL      R+  ++
Sbjct: 183 FLMLLISNYNARIAYDV 199


>gi|91775537|ref|YP_545293.1| histidine kinase [Methylobacillus flagellatus KT]
 gi|91709524|gb|ABE49452.1| histidine kinase [Methylobacillus flagellatus KT]
          Length = 730

 Score = 39.7 bits (91), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 36/180 (20%)

Query: 21  RICHDIISPIGAIHNSLELLDEV----GIEDEVMQLI-----RLSSMSAIIRLKFMRLAF 71
           R  H+  +P+  I N L +L++     GI +  + ++     R+ S+   +         
Sbjct: 511 RFVHETSTPLSTIKNYLAILEQKMLLNGIPNRDIAIVNEEIDRVGSLIGNL--------- 561

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------------RERAKIL 119
            Y+G  + +    DI Q+I+D +A+ ++  +   G K+ L+             +  ++L
Sbjct: 562 -YSGEQEHIAASTDINQLIQDLLALHRQTYLQPAGIKVTLNLYPNLPKITTIPYQVRQVL 620

Query: 120 LNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           +NL   A  ++P GG+++IS     Q    + I  ++I+      PE     +   VEST
Sbjct: 621 VNLIRNAAEAMPEGGELSISTFLENQSGSGQGIL-IQISDTGPGIPESVLSKLFTPVEST 679


>gi|307543661|ref|YP_003896140.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
 gi|307215685|emb|CBV40955.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
          Length = 697

 Score = 38.9 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 87/178 (48%), Gaps = 29/178 (16%)

Query: 15  VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVM--QLIRLSSMSAIIRL 64
           V  + + + H+I +P+  I  +L++        +DEV  E +++  Q+ R+S++ + + L
Sbjct: 477 VGEITAGVAHEINNPVAVIQGNLDVARQSLGSRVDEVATEFDLIDDQVHRISAIISKL-L 535

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLS--------RE 114
           +F R    ++GS + L+      +VI+D + + + +  +   T E+ D S         E
Sbjct: 536 QFARPG-EFSGSANRLVP----AEVIDDCLVLTRHLSSKAGVTVERDDRSMASILVERTE 590

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI---NGNLARFPEKFTQIVD 169
             ++++NL + A  ++P GG +T+  +D   E +  + I   +      PE   +I D
Sbjct: 591 LQQVIINLVVNAIHAMPEGGTLTLETEDRDVEGVPGVAIIVTDTGRGMMPEVLKRIFD 648


>gi|119896364|ref|YP_931577.1| putative sensor histidine kinase [Azoarcus sp. BH72]
 gi|119668777|emb|CAL92690.1| putative sensor histidine kinase [Azoarcus sp. BH72]
          Length = 728

 Score = 38.5 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 28/143 (19%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL-IRLSSMSAIIR--LKFMR 68
           L + + H+I +P+  I  +LEL+      D   + DE+ Q+  ++  +  I+   L+F R
Sbjct: 461 LTAGVAHEINNPVAVIQGNLELVRELLGGDSAPVADELAQIDAQVGRIHGIVTKLLQFAR 520

Query: 69  LA--FGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVSWTGEKIDLSR-ERA 116
                GYT  VD+   +GD   +         IE   A+D R  V       +++R E  
Sbjct: 521 PGDFAGYTEQVDASGLVGDCLLLTRHNLSRGRIEVTTALDARGTV-------EINRGELQ 573

Query: 117 KILLNLFMVAHASLPRGGKVTIS 139
           ++L+NL + A  ++P GG++ +S
Sbjct: 574 QVLINLIVNAMQAMPDGGRLRLS 596


>gi|94494936|ref|ZP_01301517.1| sensory box histidine kinase/response regulator [Sphingomonas sp.
           SKA58]
 gi|94425202|gb|EAT10222.1| sensory box histidine kinase/response regulator [Sphingomonas sp.
           SKA58]
          Length = 996

 Score = 38.1 bits (87), Expect = 0.75,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 17/147 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA--IIRLKF 66
           M+ V  L   I HD  + +  +  SL+LL      G +D + + I  +  SA     L  
Sbjct: 619 MEAVGQLTGGIAHDFNNMLTGVIGSLDLLQRHLAAGRQDRIDRYIDTAMTSAQRAASLTQ 678

Query: 67  MRLAFGYTGSVD-SLIGLGDIEQVIEDFI--AVDKRVQV-------SWTGEKIDLSRERA 116
             LAF    S+D + + +GD+   +ED +   +D+ +++       +W  +      E A
Sbjct: 679 RLLAFSRRQSLDVTAVNVGDLVTGMEDMLRRTMDENIRLEVHLPEATWLAKTDHNQLESA 738

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDS 143
             LLNL + A  ++P GG +TI+ +++
Sbjct: 739 --LLNLAINARDAMPHGGTLTIAARNT 763


>gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 760

 Score = 38.1 bits (87), Expect = 0.76,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 24/146 (16%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSM--SAIIR--LKFM 67
           + LL   + HDI + +  I  S ELL+ +    E  Q    IR S+   +A++R  L F 
Sbjct: 387 IGLLAGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAALVRQLLAFA 446

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT-GEKIDLSRERA----K 117
           R A G    V        +  ++EDF+        + + VS   GE     R  A    +
Sbjct: 447 RGAVGQHTDVM-------LRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLKQ 499

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDS 143
           +L+NL + A  ++P GG++T+ V ++
Sbjct: 500 VLMNLCINARDAMPEGGRITLHVTNT 525


>gi|295704436|ref|YP_003597511.1| sporulation kinase KinA [Bacillus megaterium DSM 319]
 gi|294802095|gb|ADF39161.1| sporulation kinase KinA [Bacillus megaterium DSM 319]
          Length = 574

 Score = 38.1 bits (87), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 22/154 (14%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-SMSAIIRLKFMR 68
           + + LV  L + I H+I +P+ A+   ++LL E   +   +++I        +I  +F+ 
Sbjct: 359 AQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIELITDEFLS 418

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------------- 114
           LA     +         I+ ++E+ +   K  +V    EKI + +E              
Sbjct: 419 LAKPQAKTYKD----KHIQDILENTL---KLAEVQGITEKIHVKKEIDLHLPLVICEENQ 471

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             ++  N+F  A  S+P GG VTI ++    EN+
Sbjct: 472 LKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENL 505


>gi|229590484|ref|YP_002872603.1| putative two-component sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229362350|emb|CAY49252.1| putative two-component sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
          Length = 556

 Score = 37.7 bits (86), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 17/154 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRLKF 66
           M+ V  L   I HD  + +  I  SLELL       ++  L       ++S +    L  
Sbjct: 183 MEAVGQLTGGIAHDFNNMLTGIIGSLELLRRRVSRGKLDDLDSLIDLGVTSANRAAGLTH 242

Query: 67  MRLAFGYTGSVDS--------LIGLGDI-EQVIEDFIAVDKRVQVS-WTGEKIDLSRERA 116
             LAF    S+DS        +  +G++ ++ I + I +D R+    WT E      E A
Sbjct: 243 RLLAFSRRQSLDSKPVGINQLVFSMGELLQRSINESITLDMRLDDQLWTAEADPNQLESA 302

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
             LLNL + A  ++P GGK+T+   +   +N+F+
Sbjct: 303 --LLNLVINARDAMPGGGKLTVETANRHLDNVFT 334


>gi|27383096|ref|NP_774625.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27356270|dbj|BAC53250.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 764

 Score = 37.4 bits (85), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--VMQLIRLSSMSAIIRLKFMRL 69
           M+ +  L   + HD  + + A+  SLELL +    D+  +++L+  +   A+      + 
Sbjct: 389 METIGQLTGGVAHDFNNLLAAVLGSLELLKKRLPTDDPKILRLVENAMQGAVRGASLTQR 448

Query: 70  AFGYTGSVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              +    D    + D+ +++         E  I V+ R  +     K+D ++    IL 
Sbjct: 449 MLAFARKQDLRPAVVDVRELVRGMASLLKFEAGIDVETRFPMHLPKVKVDANQLELAIL- 507

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFS 150
           NL + A  ++P GG++TI+ ++ + E   S
Sbjct: 508 NLAVNARDAMPDGGQITIAAREEQGEGGLS 537


>gi|288905304|ref|YP_003430526.1| lantibiotic biosynthesis sensor histidine kinase [Streptococcus
           gallolyticus UCN34]
 gi|306831385|ref|ZP_07464544.1| sensor histidine kinase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978289|ref|YP_004288005.1| lantibiotic biosynthesis sensor protein [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732030|emb|CBI13595.1| putative lantibiotic biosynthesis sensor histidine kinase
           [Streptococcus gallolyticus UCN34]
 gi|304426445|gb|EFM29558.1| sensor histidine kinase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178217|emb|CBZ48261.1| lantibiotic biosynthesis sensor protein [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 455

 Score = 37.4 bits (85), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT------- 74
           + HD+ +P+  I  +LELL+   + +  +  +   + S I+   +      Y+       
Sbjct: 240 LAHDVKTPLTVIKGNLELLEMTSLTENQLSFLTSINNSIIVFENYFNAMLTYSRLLSDEN 299

Query: 75  ---GSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSW-TGEKIDLSRERAKILLNLF 123
               ++   I L ++ + I+D +        ++ + Q S+  G +++L+R    I +N  
Sbjct: 300 NDKETIHLEIFLTELSREIQDILKPTTIQFTLNNQAQCSYFLGNQLNLNRALVNIFVN-- 357

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            V HA     GK+ +SV++S N    + KI  N A F  K
Sbjct: 358 AVQHAP---NGKIRLSVEESDNH--LNFKIWNNGAPFSAK 392


>gi|262199743|ref|YP_003270952.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083090|gb|ACY19059.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 906

 Score = 37.4 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 73/148 (49%), Gaps = 16/148 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR--LKFMRLAFGYTG 75
           H++ +P+ +I  ++ELL+     D  +Q I      + S M+ ++   L   RL  G   
Sbjct: 551 HELRNPLSSIRAAVELLELGPTSDVDLQRIHKSLMRQTSHMAKLVDGLLDVSRLELGRIT 610

Query: 76  SVDSLIGL-GDIEQVIEDF-IAVDKRVQV---SWTGEKIDLSRERAK---ILLNLFMVAH 127
               ++ + G +  V++D+ +++ +R Q    S   E + +S + A+   IL NL   A 
Sbjct: 611 LERQVLDIRGLVSDVLQDYLVSIKERGQTLHSSIATEALPVSCDPARLSQILDNLLANAM 670

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING 155
              PR G +T+++Q  K E + +++  G
Sbjct: 671 QFTPRDGIITVNLQRGKGEAVLTIRDTG 698


>gi|294499108|ref|YP_003562808.1| sporulation kinase KinA [Bacillus megaterium QM B1551]
 gi|294349045|gb|ADE69374.1| sporulation kinase KinA [Bacillus megaterium QM B1551]
          Length = 574

 Score = 37.0 bits (84), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 22/154 (14%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-SMSAIIRLKFMR 68
           + + LV  L + I H+I +P+ A+   ++LL E   +   +++I        +I  +F+ 
Sbjct: 359 AQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIELITDEFLS 418

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------------- 114
           LA     +         ++ ++E+ +   K  +V    EKI + +E              
Sbjct: 419 LAKPQAKTYRD----KHVQDILENTL---KLAEVQGITEKIHVKKEIDLHLPLVLCEENQ 471

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             ++  N+F  A  S+P GG VTI ++    EN+
Sbjct: 472 LKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENL 505


>gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 970

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 37/211 (17%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR------ 68
           + LL + + H++ +P+  I +  ++L +    DE     R S++   I  +  R      
Sbjct: 746 IGLLAAGVAHEVNTPLAVISSYAQMLSKQLQGDE-----RRSALLEKITTQTFRASEIVN 800

Query: 69  --LAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQV----SWTGEKIDLSRER- 115
             L F  TGS  S     DI +V+ D +A+        RV+V    + T  KI  +  + 
Sbjct: 801 NLLNFSRTGS--SEFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAPTLPKIYGNTGKL 858

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG---NV 172
            ++ LNLF+ A  ++P GG ++I+ ++ +   +        +A  PE   +I D      
Sbjct: 859 QQVFLNLFLNAKDAMPSGGTLSITTRNGRAVEVEVCDTGSGIA--PEHIQRIYDPFFTTK 916

Query: 173 ESTIDSHD------IQFYYVILLAHENKIRL 197
           +S    H       +   Y I+  H  KIR+
Sbjct: 917 KSPRQGHSGGTGLGLAVTYGIIQEHAGKIRV 947


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 87/205 (42%), Gaps = 41/205 (20%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + HD+ SP+ AI   +EL++ VG  +++ +  IR   +S              T  VD L
Sbjct: 426 VSHDLRSPLTAILGYVELIERVGTVNDLQRDFIRRIQVS----------VHNITSLVDDL 475

Query: 81  IGLGDIE---QVIEDFIAVDKRVQVSWTGEK-----------IDLSRERAKILLNLFMV- 125
           + LG IE      ++ +A+D  ++ S  G K           +DL  +   +L N   + 
Sbjct: 476 LDLGRIEAGFDTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMR 535

Query: 126 ---------AHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDG 170
                    A    P+GGK+ +S++   N+ +F +  NG      +L    +KF +  + 
Sbjct: 536 QMVDNLLDNAIKYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNA 595

Query: 171 NVESTIDSHDIQFYYVILLAHENKI 195
             + +     +     I+ AHE +I
Sbjct: 596 APDVSGTGLGLAIVKSIVEAHEGRI 620


>gi|302340427|ref|YP_003805633.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637612|gb|ADK83039.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 390

 Score = 37.0 bits (84), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 31/183 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--DEVG-IEDEVMQLI--------RLSSMSAIIRLKF 66
           + S + H+I +P+  I ++++LL  + +G +E+   Q +        RL ++S  I    
Sbjct: 162 ILSTLAHEIRTPLTVIQSTVDLLIEERIGPLEERQHQFLSSVGSNVQRLVTLSDTILASI 221

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA---- 116
              +  +T  V  +    DI +VI++       I   K +++ ++  K+ LSR  A    
Sbjct: 222 KVESAWFTIKVKPI----DIRKVIKNVALHMRPILEAKGIELRYSFPKL-LSRPPADEGW 276

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171
             ++L+NL   A   + RGG V ISV +++   + S+  NG+  R    P+ FT+   G 
Sbjct: 277 IHQVLVNLVHNAVKHMRRGGSVIISVNENEQAVVVSVNDNGSGIRTGEQPQVFTEFFQGG 336

Query: 172 VES 174
           + S
Sbjct: 337 ILS 339


>gi|312891708|ref|ZP_07751217.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295791|gb|EFQ72951.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 447

 Score = 37.0 bits (84), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           L S I HD+ SP+G I N LELLDE  ++ E  ++I 
Sbjct: 226 LMSIIAHDLRSPLGNIQNYLELLDEYSLDAEERKIIE 262


>gi|193212432|ref|YP_001998385.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085909|gb|ACF11185.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 798

 Score = 37.0 bits (84), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 24/181 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRLS 56
           ++I   +  M+L+  L   I HD  + +G I  + EL      LD   +E+ + ++ R +
Sbjct: 417 QSILLQIQKMELIGQLAGGIAHDFNNMLGVIMGNTELAMCNDGLDP-SVEENLAEIYRAA 475

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSW----TGE 107
             SA +  + +  A   T +V S+    +++Q I D +A     V K++   W     G 
Sbjct: 476 ERSAEMTSQLLAFARKQT-AVPSVF---EVDQAIGDSLAILQRVVGKKIGFDWHPSGAGC 531

Query: 108 KIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           K+ +   +  +IL+NL +  +AS   GG+ TI ++  + +   +L+  G + R P ++ Q
Sbjct: 532 KVRVDPSQFDQILMNLCL--NASDAMGGEGTIVIKAKRLKVDHTLEHPGGI-REPGEYVQ 588

Query: 167 I 167
           I
Sbjct: 589 I 589


>gi|254465485|ref|ZP_05078896.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
 gi|206686393|gb|EDZ46875.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
          Length = 654

 Score = 37.0 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 28/152 (18%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVM----QLIRLSSMSAIIRL 64
           V  + + + H+I +P+  I  +L+L   V       +E+E      Q+ R+S + + + L
Sbjct: 436 VGEITASVAHEINNPVAVIQGNLDLARTVLGRHAEPVEEEFRLIDDQVYRISVIVSKL-L 494

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSR- 113
           +F R    Y+G+     GL    +V+ D + +  R Q+  TG           ++ +SR 
Sbjct: 495 QFARPE-EYSGAA----GLISPAEVVADCLVL-TRHQIEATGIEAEAHLASTGQVRISRT 548

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           E  ++++NL + A  ++P GG++T++ +D+ +
Sbjct: 549 ELQQVIVNLILNAVQAMPGGGRLTLTAEDTPD 580


>gi|329766324|ref|ZP_08257871.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137226|gb|EGG41515.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 307

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 13/154 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68
           M +V  + SRI HDI +P+  I  S+E L      +E  Q        AI R+       
Sbjct: 92  MAIVGEMASRIGHDIRNPLSVIQMSIENLKRTYEINEQQQKQFDKIQRAIFRISHQMDDV 151

Query: 69  LAFGYTGSVD----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLN 121
           + F  T ++     SLI +  +E+ I+  I + + +++ +     ++  +  KI    +N
Sbjct: 152 MDFVKTPTISKKQCSLISM--LEESIKR-IKIPENIKIIFPKNDTEILCDEEKITIVFVN 208

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           + + A  SL  GG +TIS + +K E +  ++ NG
Sbjct: 209 MMLNAIQSLDSGGTITISAKSNKKEVMIKIEDNG 242


>gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 851

 Score = 36.6 bits (83), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 33/197 (16%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           LS+    A    RI H++ +P+  I  +L+L+D   +  E  +   +   S  + L  + 
Sbjct: 355 LSNEKAKAHFLGRISHEMRTPLHGILGTLDLMDSTPLSPEQTRYSDIMKSSGQVLLNQIN 414

Query: 69  LAFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDL------------S 112
            A   T S    + L     D+EQ+IED IA  +       G  IDL             
Sbjct: 415 DALDITRSSAEPLPLVETVFDVEQLIED-IATSQGAVAEAHGNTIDLHVQNAPVGAVLGD 473

Query: 113 RER-AKILLNLFMVAHA-SLPRGGKVTISVQ----DSKNENIFSLKIN--------GNLA 158
           R+R  ++LLNL  V++A    R G+++I         K++NIF ++++         ++ 
Sbjct: 474 RDRVQQVLLNL--VSNAIKFTRNGRISIEAARVGLHGKHDNIFEIQVSDTGIGIAEDDVE 531

Query: 159 RFPEKFTQIVDGNVEST 175
           R  + F +++  + E T
Sbjct: 532 RIFDDFVRVISSDGERT 548


>gi|212639786|ref|YP_002316306.1| signal transduction histidine kinase, nitrogen specific, contains
           PAS/PAC domain [Anoxybacillus flavithermus WK1]
 gi|212561266|gb|ACJ34321.1| Signal transduction histidine kinase, nitrogen specific, contains
           PAS/PAC domain [Anoxybacillus flavithermus WK1]
          Length = 418

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+ +      + ++  L + I H+I +P+ +I   L+++ E    DE    I L  +  
Sbjct: 191 VAEQLLLKKEKLSVIGELAAGIAHEIRNPLTSIKGFLQMMKETKEVDERFVQIMLDEIER 250

Query: 61  IIRL--KFMRLAFGYTGSVDSL---------IGLGDIEQVIEDF-IAVDKRVQVSWTGEK 108
           + ++    + LA     S   L         IGL   E ++++  +  + R      G+K
Sbjct: 251 VNQIVSHLLVLAKPQMKSYKPLALHDVLEYVIGLFTYEAILQNVQLKYEPRTSAVVYGDK 310

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
            +L     ++ +N+   A  ++PRGG +TIS +D  +
Sbjct: 311 NEL----IQVFVNVVKNALEAMPRGGVLTISAKDEAD 343


>gi|313679063|ref|YP_004056802.1| histidine kinase [Oceanithermus profundus DSM 14977]
 gi|313151778|gb|ADR35629.1| histidine kinase [Oceanithermus profundus DSM 14977]
          Length = 779

 Score = 36.6 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           A + S + H+I +P+ A+  SLELL + G+E EV +LI  +  SA
Sbjct: 110 ARMLSVLAHEIKNPLFAVLGSLELLTQRGLEAEVHKLIETAHTSA 154


>gi|300788032|ref|YP_003768323.1| hypothetical protein AMED_6186 [Amycolatopsis mediterranei U32]
 gi|299797546|gb|ADJ47921.1| hypothetical protein AMED_6186 [Amycolatopsis mediterranei U32]
          Length = 429

 Score = 36.6 bits (83), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRG 133
           GS    IG  D  ++  D  AV   ++ +WTGE  D +RER K   +L   A  +L   G
Sbjct: 70  GSKSGTIGA-DHHELAGDLAAVLNNLEPAWTGEGADRARERIKAFSDLVSAAATTLSSNG 128

Query: 134 GKVT 137
           G VT
Sbjct: 129 GNVT 132


>gi|269958531|ref|YP_003328318.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel]
 gi|269848360|gb|ACZ49004.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel]
          Length = 217

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 11/143 (7%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           +L +R+ HD+   +GA+ + +E L E    + +++ +  +S   I R + +R A+  +  
Sbjct: 17  VLSARLLHDLAGSVGAMVSHVECLVEDPGSESMLRSLEEASEEIIARFRLLRQAYSASEE 76

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----- 131
             S          IE ++      Q+ W  E      E  + +  L  +AHA+L      
Sbjct: 77  NSS---FDKTRNNIEQYLQKKGVAQLFWEVEAQFADAELVERINRL--LAHAALLSVMLM 131

Query: 132 -RGGKVTISVQDSKNENIFSLKI 153
            RG ++ +SV D+  E    LK+
Sbjct: 132 IRGSEIAVSVVDAAEEGSVQLKV 154


>gi|253576783|ref|ZP_04854109.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843814|gb|EES71836.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 639

 Score = 36.6 bits (83), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 44/177 (24%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEV---MQLIRLSSMSAIIRLKFM 67
           M++++ L + + H++ +P+      L+LL E     D+V   M L  L   SAII   F+
Sbjct: 419 MEIISELAASVAHEVRNPLQVTRGFLQLLVEKQQNSDKVYLSMALEELDRASAIIT-DFL 477

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
             A    G V +L        V+E+FI ++                    IL+ L     
Sbjct: 478 TFAKPEGGKVTTL-------NVLEEFIHIEG-------------------ILIPL----- 506

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A+L +GGK+T+ +   KN     L + GN ++F + F  I+  ++E+     DIQ +
Sbjct: 507 ANL-QGGKITVHI--PKN-----LYVRGNSSKFKQAFINIIKNSIEALRGEGDIQIW 555


>gi|302343682|ref|YP_003808211.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640295|gb|ADK85617.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 934

 Score = 36.6 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 19/145 (13%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-LDEV---GIEDEVMQLIRLSSMSAIIRLK-F 66
           M+ + +L   I HD  + +GAI  S+EL +D+    G++   ++ I    ++++ R K  
Sbjct: 557 MEAIGVLAGGIAHDFNNILGAILGSVELAMDQAHDHGLDAADLRQI----IASVDRAKEL 612

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----------ERA 116
           +R    ++  V       D+ + +E  IAV KR        +  L+R          +  
Sbjct: 613 VRQILTFSRKVAPQFKAMDLSEEVERTIAVLKRTLPKMIEIETSLARGLPPILADANQIG 672

Query: 117 KILLNLFMVAHASLPRGGKVTISVQ 141
           ++LLNL   A  ++P GGK+ I  +
Sbjct: 673 QVLLNLASNAAHAMPDGGKINIVTE 697


>gi|258405276|ref|YP_003198018.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797503|gb|ACV68440.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 758

 Score = 36.6 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 13/142 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--KFMRL 69
           M+ V +L   + HD  + + AI  +L+LL     E    Q  RL+++ + IR   + ++ 
Sbjct: 375 MESVGILAGGLAHDFNNLLHAIRGNLDLLGHNKPEAHPDQQ-RLATIRSSIRRAERLVQQ 433

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWT-GEKIDLSR----ERAKIL 119
              ++   DS     DI QV+++       ++ K +++  T G+ + L      +  +++
Sbjct: 434 LLLFSRKADSRKQNQDINQVVQESARMLESSIPKMIEIELTLGQGLPLVYADIVQVEQVV 493

Query: 120 LNLFMVAHASLPRGGKVTISVQ 141
           LNL   A +++P+GG++TI   
Sbjct: 494 LNLGRNAESAMPQGGRLTIETH 515


>gi|295706163|ref|YP_003599238.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803822|gb|ADF40888.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 401

 Score = 36.2 bits (82), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 22/158 (13%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIR--LSSMSAII 62
           N   + ++  L + I H++ +P+  I   ++L  E       M    LI+  LS +  II
Sbjct: 172 NSEKLSVIGHLAASIAHEVRNPLTTIKGFIQLFSETQQPKNTMIYRDLIQHELSQIEHII 231

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSWTGEKID 110
             +FM LA       +SL+    +++V++ F  V             K   +  +G+K  
Sbjct: 232 -AEFMSLAKREYAYTESLVMTDLLDEVLKQFEPVTGVKNIHIIRHYPKEHPLLISGQKTQ 290

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           L++    I+ N    A  S+  GGK+T+S++ S  E +
Sbjct: 291 LTQAFIHIIQN----AIDSMESGGKLTVSIKKSARETL 324


>gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
 gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
          Length = 430

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 11/90 (12%)

Query: 92  DFIAVDKRVQVSW----TGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNE 146
           D  A  K + V++    T  KID + +R  +++LNL   A    P GGKVTI+++D   +
Sbjct: 285 DSSAKTKNIDVTFYDQATDMKIDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIKDEGED 344

Query: 147 NIFSLKING------NLARFPEKFTQIVDG 170
              S+K  G      ++ R  E+F ++  G
Sbjct: 345 AFISVKDTGIGIAKEHMPRLFERFYRVDKG 374


>gi|149278397|ref|ZP_01884534.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149230767|gb|EDM36149.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 444

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S + HD+  P+ +I   LE+L+ +G+E+E  QLI    +  I R     L    + S 
Sbjct: 225 LFSIVAHDVRMPLSSIQGYLEILNGIGLEEEEKQLIE-GQLLQITRDTSEMLMNLLSWSK 283

Query: 78  DSLIGLG------DIEQVIEDFIAVDKRVQVS-------WTGEKIDLSRERAKILL---N 121
             L G+       D+   + D++ V+K +           T  ++++  +   + L   N
Sbjct: 284 AQLNGMSIKLKPMDVNATLRDWLKVEKSIAAKKGIRLAILTAGQLNIMADHDMLHLVVRN 343

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           L   A    P GG+V IS +  ++  +  +  NG
Sbjct: 344 LVSNALKFTPEGGEVVISTRYRESNGVIVISDNG 377


>gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
 gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 808

 Score = 36.2 bits (82), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +++   +  M+LV  L   I HD  + +G I  + EL       E  +E+ + ++ R + 
Sbjct: 428 QSVLLQIQKMELVGQLAGGIAHDFNNMLGVILGNAELALSSDDLEASVEENLQEIYRAAE 487

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
            SA +  + +  A   T    ++  L  I +V++D + + +RV     GEKI++      
Sbjct: 488 RSAEMISQLLAFARKQT----AMPKLVHINEVVQDSLPILQRV----AGEKIEIELRPCG 539

Query: 117 -------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +IL+NL + A  ++   GK+ I V   K  NI   + +    R P  
Sbjct: 540 DDCRLHIDPSQIDQILMNLCLNARDAMNGTGKIVIEV---KRINIAPSQYSSGDFRLPGD 596

Query: 164 F 164
           F
Sbjct: 597 F 597


>gi|194292456|ref|YP_002008363.1| histidine kinase of the two-component signal transduction system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226360|emb|CAQ72309.1| Histidine kinase of the two-component signal transduction system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 684

 Score = 36.2 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 14/145 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRL--SSMSAIIRLKFM 67
           + L   L + + H+I +PI  I  +L++  ++     D V   +RL    +  I  L   
Sbjct: 452 LALAGQLTAGVAHEINNPIAVIQGNLDVARDILGPAADPVRHELRLIDEQVRRIYLLTNR 511

Query: 68  RLAF----GYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSR-ERAK 117
            L F     Y G+ + L    +  G ++ V         RV++++T   ++ +SR E  +
Sbjct: 512 LLQFVRPEAYAGNTERLDVGEVAGGCVDLVRHMLKDAAIRVELAFTATRRVRISRSELQQ 571

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142
           +++NL   A  ++P GG +T++ QD
Sbjct: 572 VIVNLLTNAIHAMPDGGTLTLATQD 596


>gi|118580923|ref|YP_902173.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503633|gb|ABL00116.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 543

 Score = 36.2 bits (82), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF-GYTGS 76
           L +R+ H+I +P+ A+  S++LL + G   E  Q +    +    RL  +  +F  Y   
Sbjct: 328 LAARMAHEIRNPLAAMSGSVQLLADHGTVAENDQRLLAIILRETDRLNALITSFLTYARP 387

Query: 77  VDS---LIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRER---AKILLNLFMVA 126
           V      I LG +   +   ++ D+R       +   E++ +S ++    ++L+NL   A
Sbjct: 388 VSPHKERISLGGLIDEVRLLVSSDRRFGGITLTAQVPERMTISADQNQLRQVLINLLNNA 447

Query: 127 HASLPRGGKVTISVQDSKNEN 147
             ++P GG+V IS   +  E+
Sbjct: 448 AEAMPEGGRVEISAHLASPED 468


>gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 891

 Score = 35.8 bits (81), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 79/153 (51%), Gaps = 18/153 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-----IIR--L 64
           M+ +  L   I HD+ + +G I  +++L      + + ++L+   S+SA     +++  L
Sbjct: 519 MESIGTLAGGIAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETVSVSARRGADMVKQVL 578

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVD-KRVQVSWT--GEKIDLSRERAK 117
            F R   G    V  +  L +++++  D    FI+VD    + +W+  G+   L     +
Sbjct: 579 SFARGLEGQRTLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGDPTQLH----Q 634

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
           +LLNL + A  ++P+GG++T++  + + ++ F+
Sbjct: 635 VLLNLCVNARDAMPQGGRLTLNACNQRIDDHFA 667


>gi|319649833|ref|ZP_08003984.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317398413|gb|EFV79100.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 614

 Score = 35.8 bits (81), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 20/146 (13%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIRLKF 66
           ++ ++  L + I H+I +P+ A+   ++LL++   ED  M        LS + +II  +F
Sbjct: 393 TLHVIGELAAGIAHEIRNPMTALKGFIQLLEDSVKEDHTMYFNVITTELSRIDSIIN-EF 451

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEK-----IDLSRER 115
           + LA              DI Q++++ +      AV   VQ     EK        S + 
Sbjct: 452 LILAKPQAVKFVE----KDISQIMKETVDLLSAQAVLHNVQFRTYYEKNLPNVFCESNQM 507

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQ 141
            K+ +N+   A   +P+GG +T+S+Q
Sbjct: 508 KKVFINIIKNAIEVMPKGGYITVSIQ 533


>gi|182417821|ref|ZP_02949135.1| two-component sensor histidine kinase [Clostridium butyricum 5521]
 gi|237667299|ref|ZP_04527283.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378284|gb|EDT75816.1| two-component sensor histidine kinase [Clostridium butyricum 5521]
 gi|237655647|gb|EEP53203.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 453

 Score = 35.8 bits (81), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 26/148 (17%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFG---- 72
             S I HD+ +PI  I+++++ L+++ IE D++  L + +S+S+   +  +R A      
Sbjct: 228 FLSSISHDLKTPINVIYSAIQ-LEQIYIEKDDIDSLKKYNSISSENCISLIRFANNLIDN 286

Query: 73  ---YTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKI--DLSRER---------- 115
              Y+  + + +   +I +++ED++   VD    VSW G ++  D + E           
Sbjct: 287 SKIYSQFLTANLKNVNIVEIVEDYVMSYVD---YVSWNGIELIFDTNTEECMIEVDIEFI 343

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS 143
            +I+LNL         +GGK+ + +++ 
Sbjct: 344 GRIILNLISNGVKYTAKGGKIYVIIEEK 371


>gi|226941819|ref|YP_002796893.1| CarB [Laribacter hongkongensis HLHK9]
 gi|226716746|gb|ACO75884.1| CarB [Laribacter hongkongensis HLHK9]
          Length = 1068

 Score = 35.8 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 15/85 (17%)

Query: 79  SLIGLGDIEQVIEDFIAVDKRV---------------QVSWTGEKIDLSRERAKILLNLF 123
           SL G G   +VI  ++AV + V               ++  TGE + + R  A+  +   
Sbjct: 867 SLAGQGVTAEVIPPYVAVKEAVFPFIKFPGVDTILGPEMKSTGEVMGVGRNFAEAFVKAQ 926

Query: 124 MVAHASLPRGGKVTISVQDSKNENI 148
           + A   LP+GGKV ISV+D+    I
Sbjct: 927 LGAGDRLPQGGKVFISVRDADKSGI 951


>gi|295680798|ref|YP_003609372.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295440693|gb|ADG19861.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 794

 Score = 35.4 bits (80), Expect = 4.8,   Method: Composition-based stats.
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 13/149 (8%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
           F    M+ V  L   + HD  + +  +  +LELLD     DE  +     +++A+ R   
Sbjct: 283 FQSQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHYRDEWTRERVAKAITAVERGSK 342

Query: 64  LKFMRLAFGYTGSVDSLI--------GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           L    LAFG    +  ++        G+ D + + +++ I V+  V        +D+  +
Sbjct: 343 LASQLLAFGRRQPLQPVVINLASALRGMDDLLRRALDETIDVETVVAGGLWNTLVDI-HQ 401

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDS 143
              ++LNL + A  ++  GGK+T+ + ++
Sbjct: 402 LENVILNLAINARDAMAEGGKLTMELSNA 430


>gi|302342075|ref|YP_003806604.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638688|gb|ADK84010.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 868

 Score = 35.4 bits (80), Expect = 5.0,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 13/143 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--KFMRL 69
           M+ +  L   + HD  + + A+H  ++++       EV +  RLS M   +      +R 
Sbjct: 491 MEAIGTLAGGVAHDFNNILQALHGYVQIMTASAGLGEVDRQ-RLSQMDQALERASSLVRQ 549

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----------AKIL 119
              ++  VD+ +G  D+   +   +A+ +R        ++DL  E            +I+
Sbjct: 550 LLTFSRKVDAELGPVDLNFEVRQSVALLERTIPKMIAIRLDLEPEPRTISANPIQLEQII 609

Query: 120 LNLFMVAHASLPRGGKVTISVQD 142
           LNL   +  S+P GG +TI  ++
Sbjct: 610 LNLAANSRDSMPEGGTLTIRTRN 632


>gi|186685040|ref|YP_001868236.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467492|gb|ACC83293.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1298

 Score = 35.4 bits (80), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 52/217 (23%)

Query: 7    FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRL----SSMSA 60
            F    ++ +  L   I HD+ + +  I  + +LL    ++DE    QL+ L    +   A
Sbjct: 917  FRAQRLESIGTLAGGIAHDLNNILTPILAAAQLLQGTFLQDEERSGQLLALVESNAQRGA 976

Query: 61   IIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS-------W--TG 106
             +  + +  A G+ G      V  LI   +I Q++++     K +++S       W  TG
Sbjct: 977  ALVKQILSFARGFKGERILIQVKYLIA--EIIQIVKE--TFPKSIELSAIIPEDTWPITG 1032

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                L     ++L+NL + A  +LP GGK+ ISV     EN F            E +T+
Sbjct: 1033 NTTQLH----QVLMNLVVNARDALPDGGKIAISV-----ENKF----------IDEAYTK 1073

Query: 167  IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
            +   N+++ +       +Y+++   ++ + + PEI+D
Sbjct: 1074 M---NLDAQVG------HYIMITVADDGVGIPPEILD 1101


>gi|239933106|ref|ZP_04690059.1| cobalamin B12-binding domain-containing protein [Streptomyces
           ghanaensis ATCC 14672]
          Length = 199

 Score = 35.4 bits (80), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 33/153 (21%)

Query: 75  GSVDSL-IGLG---DIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERAKILLN---LFMVA 126
           G+VD L  GL    D E ++ D +A V ++V   W  ++I +++E A   +N   + ++A
Sbjct: 26  GAVDVLRAGLDAGRDKESLLLDVVARVQEKVGTEWAADRISVAQEHAATAINERVIAVLA 85

Query: 127 HAS------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           H S      LPR G+VT+S             ++G    FP +    V       +D   
Sbjct: 86  HRSPAERSVLPRRGRVTVSC------------VDGEWHAFPARLVAEVLRLRGWDVDFLG 133

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            Q     L+AH+++        D   V+LSA L
Sbjct: 134 AQTPTAHLVAHQHR-------TDSDAVLLSASL 159


>gi|148284384|ref|YP_001248474.1| hypothetical protein OTBS_0664 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739823|emb|CAM79730.1| conserved hypothetical [Orientia tsutsugamushi str. Boryong]
          Length = 225

 Score = 35.0 bits (79), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 75/164 (45%), Gaps = 26/164 (15%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQL----IRLSSMSAII 62
           ++++ L   +  +I HD    +GAI N ++    ++  + +++  L    I++ S + ++
Sbjct: 1   MNNIKLAQFISVKIFHDFAGGLGAISNGIKYCIDNQYQLNNKLYGLAFDTIKIGSTNLLV 60

Query: 63  RLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIA--VDKRVQVSWT-------GE 107
           +L+  R  +G      S           +I  V++D+    ++ ++ + +        G 
Sbjct: 61  KLQLYRQMYGSASKSYSDNKLYHEANFDEIRAVLDDYFKALINTKINLVFKDEFFHVKGT 120

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENI 148
            ID+S    K+L+ L + A  +L  GG +T+ +   QD    NI
Sbjct: 121 NIDIST--GKLLMCLVISAQDALLHGGDITVKIYRKQDKTQINI 162


>gi|171060406|ref|YP_001792755.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777851|gb|ACB35990.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 675

 Score = 35.0 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 21/152 (13%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELL-------------DEVGIEDEVMQLIRLSSMSAI 61
           V  L + I H++ +PI  I  +L++L              E+ + DE ++ +RL      
Sbjct: 451 VGQLTASIAHEVNNPIAVIQGNLDVLRSQLPAATAATVHTELRLIDEQIERMRLIVTQL- 509

Query: 62  IRLKFMRLA--FGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK-IDLSR-ERA 116
             L+F + A   GY   VD+   L D   ++   +A  +  VQ  +T  +   ++R E  
Sbjct: 510 --LQFAKPAEYAGYIAPVDTARVLDDCLVLVGHLLARTRITVQRDFTATRQPGINRNELQ 567

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           ++L+NL + A  ++P GG + ++ +D + +++
Sbjct: 568 QVLVNLLVNAIHAMPEGGALGLATRDVEPDSV 599


>gi|327481616|gb|AEA84926.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri DSM 4166]
          Length = 528

 Score = 35.0 bits (79), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM--SAIIR--L 64
           ++ +  L   I HD  + +  I   L++LD   +    + +M  +R ++   +++ R  L
Sbjct: 160 IEAIGQLTGGIAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQLL 219

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILL 120
            F R       SVD ++ +G + ++++  ++ D  VQV +  +    ++D   E   ++L
Sbjct: 220 AFSRRQSLAPESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVDPG-ELELVIL 278

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           NL + A  ++P GG + I  +++ +E +  L+  G+  R 
Sbjct: 279 NLAVNARDAMPDGGSILIEARNAPDEPVMGLR--GDFVRL 316


>gi|322419241|ref|YP_004198464.1| carbamoyl-phosphate synthase large subunit [Geobacter sp. M18]
 gi|320125628|gb|ADW13188.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M18]
          Length = 1082

 Score = 35.0 bits (79), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 79  SLIGLGDIEQVIEDFIAVDKRV---------------QVSWTGEKIDLSRERAKILLNLF 123
           +L  LG  E++I + I+V + V               ++  TGE + +    AK      
Sbjct: 883 TLAELGVTEEIIPEHISVKESVFPFAKFPGVDTILGPEMKSTGEVMGIGETFAKAYAKAQ 942

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFS 150
           M A+  LP  GKV ISV+DS  ++I S
Sbjct: 943 MGANVKLPATGKVFISVKDSDKKHIVS 969


>gi|146283221|ref|YP_001173374.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri A1501]
 gi|145571426|gb|ABP80532.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri A1501]
          Length = 561

 Score = 35.0 bits (79), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 79/160 (49%), Gaps = 14/160 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM--SAIIR--L 64
           ++ +  L   I HD  + +  I   L++LD   +    + +M  +R ++   +++ R  L
Sbjct: 193 IEAIGQLTGGIAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQLL 252

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILL 120
            F R       SVD ++ +G + ++++  ++ D  VQV +  +    ++D   E   ++L
Sbjct: 253 AFSRRQSLAPESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVDPG-ELELVIL 311

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           NL + A  ++P GG + I  +++ +E +  L+  G+  R 
Sbjct: 312 NLAVNARDAMPDGGSILIEARNAPDEPVMGLR--GDFVRL 349


>gi|116251644|ref|YP_767482.1| nitrogen fixation two component sensor/regulator fusion
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256292|emb|CAK07373.1| putative nitrogen fixation two component sensor/regulator fusion
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 639

 Score = 35.0 bits (79), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 10/139 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--IIRLKFMRL 69
           M+ V  L   + HD  + +  I  +LE+L+    E   + L+R +  +A    RL    L
Sbjct: 263 MEAVGQLTGGLAHDFNNLLAVIIGNLEMLEARLAEPGQLSLLREAQSAADDGARLTSQLL 322

Query: 70  AFGYTGSVDSLI---G--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLN 121
           AFG   ++   +   G  LG+   +++  +     ++    G ++    ++A++   LLN
Sbjct: 323 AFGRRQALAPTVLDVGALLGEFSDLVQRTLGDSVELRTIIPGRRLSAMADKAQLQSALLN 382

Query: 122 LFMVAHASLPRGGKVTISV 140
           L + A  ++P GG++TI +
Sbjct: 383 LSINARDAMPAGGRLTIEI 401


>gi|71907457|ref|YP_285044.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71847078|gb|AAZ46574.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 674

 Score = 34.7 bits (78), Expect = 8.4,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 34/152 (22%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELL-DEVGIEDE-VMQLIRL----SSMSAIIRLKFMR 68
           +  L + + H+I +PI  I  +L++L D +G + E V Q I+L         +I  K ++
Sbjct: 450 IGQLTAGVAHEINNPIAVIQGNLDVLRDVLGPQAEPVAQEIKLIHDQVQRVRLIVAKLLQ 509

Query: 69  LA-----FGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            A      GY   V++             L+  GDI   IE  I   +++  +       
Sbjct: 510 FARPQDYVGYLEPVETGQLIQDCLLLVRHLLNKGDI--AIEQHIDSTRQILCN------- 560

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
              E  ++++NLF+ A  ++P GG + I+V+D
Sbjct: 561 -KNELQQVIINLFVNAIQAMPEGGVLKIAVED 591


>gi|322421490|ref|YP_004200713.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127877|gb|ADW15437.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 879

 Score = 34.7 bits (78), Expect = 8.6,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDE----VMQLIRLSSMSAIIR--- 63
           M+ V  L   + HD  + + AI    EL L +VG ++E    V +++  S  +A +    
Sbjct: 507 MEAVGQLAGGVAHDFNNILSAIIGYSELTLRKVGADEEARHYVDEILAASHRAATLTRSL 566

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120
           L F R        +D    +G  +  +   I  D  ++V+   E++ +  +R ++   L+
Sbjct: 567 LAFSRKQPVSLAVIDLNEVVGGFQSFLSRLIKEDIELKVACGTERLPVLADRGQVEQVLM 626

Query: 121 NLFMVAHASLPRGGKVTISVQ 141
           NL   A  ++PRGG + ++ +
Sbjct: 627 NLVANARDAMPRGGSLVVTTR 647


>gi|255600751|ref|XP_002537525.1| sensory transduction histidine kinase, putative [Ricinus communis]
 gi|223516032|gb|EEF24858.1| sensory transduction histidine kinase, putative [Ricinus communis]
          Length = 429

 Score = 34.7 bits (78), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           LL   + HD+ +P+  +  S+E+LD E  ++  ++Q I    M AIIR +F+    G  G
Sbjct: 221 LLLGGVSHDLRTPLARLRLSVEMLDQETDLKSGMVQDI--DDMDAIIR-QFLAYVRGAEG 277

Query: 76  SVDSLIGLGDIEQVIED 92
            V+     GD+ Q+I D
Sbjct: 278 EVEV---TGDVNQLIRD 291


>gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1151

 Score = 34.7 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 18/145 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-----IIR--L 64
           M+ +  L   I HD+ + +G I  SL++L     + +  +L+ L   SA     ++R  L
Sbjct: 780 MESIGTLAGGIAHDLNNSLGPILMSLDVLRMKFPDPDSRELLDLIQSSAQRSADMVRQVL 839

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT--GEKIDLSRERAK 117
            F R   G   +V     L +IE+++ D    + +++       WT  G+   L     +
Sbjct: 840 SFGRGIEGRKMAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGDPTQLH----Q 895

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142
           +LLNL + A  ++P+GG ++I+ ++
Sbjct: 896 VLLNLCVNARDAMPQGGLLSITAEN 920


Searching..................................................done


Results from round 2




>gi|254780891|ref|YP_003065304.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040568|gb|ACT57364.1| hypothetical protein CLIBASIA_03940 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 215

 Score =  290 bits (743), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 215/215 (100%), Positives = 215/215 (100%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA
Sbjct: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL
Sbjct: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD
Sbjct: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK
Sbjct: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215


>gi|15889709|ref|NP_355390.1| hypothetical protein Atu2438 [Agrobacterium tumefaciens str. C58]
 gi|15157619|gb|AAK88175.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 215

 Score =  270 bits (690), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/215 (42%), Positives = 143/215 (66%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M   +   LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A
Sbjct: 1   MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GS  + I  G+ E+  +DF A +K+ +VSW+G +  + + R K+LL
Sbjct: 61  SVRLKFARLAFGASGSAGASIDTGEAEKAAQDFAAAEKKAEVSWSGPRAIVPKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA+ ++PRGG V + +++ + +  F + + G + R P KF +I +G +E  +D+H 
Sbjct: 121 NLFLVAYGAIPRGGNVDVLLENPEGDARFEIAVKGRMMRVPAKFVEIYEGRLEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +Q YY +LLA E  + +  ++ DD  V  +  + +
Sbjct: 181 VQPYYTLLLAEEANMTVEYKVHDDRIVFTAKTVAE 215


>gi|190893162|ref|YP_001979704.1| hypothetical protein RHECIAT_CH0003580 [Rhizobium etli CIAT 652]
 gi|218516916|ref|ZP_03513756.1| hypothetical protein Retl8_26701 [Rhizobium etli 8C-3]
 gi|190698441|gb|ACE92526.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 215

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/213 (45%), Positives = 142/213 (66%), Gaps = 1/213 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++S+PRGG + +++++ + +  F+L   G + R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           IQ YY +LLA E  + L      D  +V  A++
Sbjct: 181 IQPYYTVLLAEECGMTLDHSASPDE-LVFKAVV 212


>gi|325293788|ref|YP_004279652.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3]
 gi|325061641|gb|ADY65332.1| hypothetical protein AGROH133_08299 [Agrobacterium sp. H13-3]
          Length = 215

 Score =  268 bits (686), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 141/207 (68%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M   +   LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G +D+ + LIR S+++A
Sbjct: 1   MTSKLNITLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGTDDDALDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GS  + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSAGASIDTGEAEKAAKDFAAAEKKAEVTWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+V+++++PRGG V + ++D + +  F + + G + R P KF +I +G +E  +D+H 
Sbjct: 121 NLFLVSYSAIPRGGNVDVVLEDPEGDAKFEITVKGKMMRIPAKFAEIYEGRLEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNV 207
           +Q YY +LLA E  + +  ++ +D  V
Sbjct: 181 VQPYYTLLLAEEADMAVEYKVHEDRIV 207


>gi|315122692|ref|YP_004063181.1| hypothetical protein CKC_04720 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496094|gb|ADR52693.1| hypothetical protein CKC_04720 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 215

 Score =  268 bits (685), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 143/215 (66%), Positives = 174/215 (80%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  N+ F+LSSMDL ALLCSRICHDIISPIGAIHNSLELLDE GIEDE +QLIRLSSM+A
Sbjct: 1   MVNNLSFSLSSMDLSALLCSRICHDIISPIGAIHNSLELLDEEGIEDEAIQLIRLSSMNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           I RLKF+RLAF YTGSV SL+GL +I+Q+I DFIA+D R+ V W  E+ DL R+++K+LL
Sbjct: 61  IARLKFIRLAFCYTGSVHSLVGLDEIKQIIRDFIAIDNRITVFWVSEETDLFRKKSKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLFM+A+ASL +GG++ IS++DS  +NIFSLKINGN  R PEKF QI+  +V+  IDSH 
Sbjct: 121 NLFMIAYASLLKGGEIIISIKDSTADNIFSLKINGNRVRLPEKFIQIMAQDVDLEIDSHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +Q YY  LLA EN ++L  EIIDD NVVLS L +K
Sbjct: 181 VQLYYTALLADENDVKLSYEIIDDQNVVLSVLTKK 215


>gi|307300490|ref|ZP_07580270.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C]
 gi|307318355|ref|ZP_07597790.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83]
 gi|306896037|gb|EFN26788.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti AK83]
 gi|306904656|gb|EFN35240.1| Protein of unknown function DUF2328 [Sinorhizobium meliloti BL225C]
          Length = 220

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/211 (44%), Positives = 142/211 (67%), Gaps = 1/211 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ S+PRGG + I++++ + + IF+L   G + R P K  +++ G  E  +D+H 
Sbjct: 121 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           IQ YY +LLA E  + +   +     +V +A
Sbjct: 181 IQPYYTVLLAEEAGMAIDV-VSTGEAIVFTA 210


>gi|15966473|ref|NP_386826.1| hypothetical protein SMc00652 [Sinorhizobium meliloti 1021]
 gi|15075744|emb|CAC47299.1| ChpT histidine phosphotransferase [Sinorhizobium meliloti 1021]
          Length = 221

 Score =  267 bits (682), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/211 (44%), Positives = 142/211 (67%), Gaps = 1/211 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 2   MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 62  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVNWNGPRAIIAKNRVKLLL 121

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ S+PRGG + I++++ + + IF+L   G + R P K  +++ G  E  +D+H 
Sbjct: 122 NLFLIAYGSIPRGGVIDITLENPEFDAIFTLNAKGRMMRVPPKLVELISGTPEEAVDAHS 181

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           IQ YY +LLA E  + +   +     +V +A
Sbjct: 182 IQPYYTVLLAEEAGMAIDV-VSTGEAIVFTA 211


>gi|222086835|ref|YP_002545369.1| hypothetical protein Arad_3506 [Agrobacterium radiobacter K84]
 gi|221724283|gb|ACM27439.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 215

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/212 (44%), Positives = 141/212 (66%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    L+  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLTGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +VSWTG +  + + R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAAAEKKAEVSWTGPRAIIPKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA+ S+PRGG + + +++   +  F++   G L R P KF +I  G +E  +D+H 
Sbjct: 121 NLFLVAYGSIPRGGNIDVVLENPDLDAKFTITTKGRLMRVPPKFAEICSGTLEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           IQ YY +LLA E+ + L  +   +    ++ +
Sbjct: 181 IQPYYTVLLADESGMELSYKATPEELTFIATM 212


>gi|163758755|ref|ZP_02165842.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43]
 gi|162284045|gb|EDQ34329.1| hypothetical protein HPDFL43_15067 [Hoeflea phototrophica DFL-43]
          Length = 218

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 143/215 (66%), Gaps = 1/215 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M LIR S+++A
Sbjct: 1   MAKNKNLTLAGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+ + D+++ DK+ +V W+G +  + + + K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAVLDYVSADKKTEVKWSGPRAIIPKNQVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA+ ++PRGG++ + ++    +  F L   G + R P KF +I  G ++  ID+H 
Sbjct: 121 NLFLVAYGAIPRGGEIDVILETLDTDPKFRLVSRGRMVRVPPKFLEIHSGELDEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           IQ YY +LLA E+ + L      D  VV +A L +
Sbjct: 181 IQPYYTVLLADESGMALSCSANADE-VVFTAQLAE 214


>gi|86358934|ref|YP_470826.1| hypothetical protein RHE_CH03336 [Rhizobium etli CFN 42]
 gi|86283036|gb|ABC92099.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 215

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/213 (45%), Positives = 142/213 (66%), Gaps = 1/213 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAIAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F+L   G L R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFTLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           IQ YY +LLA E  + L      D  +V +A +
Sbjct: 181 IQPYYAVLLAEECGMTLDHSASPDE-LVFTATV 212


>gi|241206028|ref|YP_002977124.1| hypothetical protein Rleg_3338 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859918|gb|ACS57585.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 215

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/212 (45%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           IQ YY +LLA E  + L      D  +V +A+
Sbjct: 181 IQPYYTVLLAQECGMTLDHSASADE-LVFTAV 211


>gi|209550657|ref|YP_002282574.1| hypothetical protein Rleg2_3081 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536413|gb|ACI56348.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 216

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 138/207 (66%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN+   L+  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MSKNLNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 121 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGTIEEAIDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNV 207
           IQ YY +LLA E  + L      +  V
Sbjct: 181 IQPYYTVLLAQECGMTLDHSASAEELV 207


>gi|116253501|ref|YP_769339.1| hypothetical protein RL3760 [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258149|emb|CAK09250.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 216

 Score =  266 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 96/212 (45%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 2   MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 62  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 121

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 122 NLFLVAYSAIPRGGVLEVTLENPEFDAKFKLTSKGKLMRLPPKFVEISTGTIEEAIDAHS 181

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           IQ YY +LLA E  + L      D  +V +A+
Sbjct: 182 IQPYYTVLLAQECGMTLDHSASADE-LVFTAV 212


>gi|227823289|ref|YP_002827261.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234]
 gi|227342290|gb|ACP26508.1| hypothetical protein NGR_c27600 [Sinorhizobium fredii NGR234]
          Length = 215

 Score =  265 bits (678), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 93/214 (43%), Positives = 143/214 (66%), Gaps = 1/214 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 2   MAKNPNLTLTGPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 61

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W+G +  + + R K+LL
Sbjct: 62  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAAAEKKTEVNWSGPRAIIGKNRVKLLL 121

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ ++PRGG + I++++ + + +F+L   G + R P K  +++ G  E  +D+H 
Sbjct: 122 NLFLIAYGAIPRGGSIDITLENPEFDAVFTLVAKGRMMRVPPKLMELLSGTPEEAVDAHS 181

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           IQ YY +LLA E  + +         +V +A +E
Sbjct: 182 IQPYYTVLLAEEAGMAIDV-TSTGEAIVFTARIE 214


>gi|218682347|ref|ZP_03529948.1| hypothetical protein RetlC8_26202 [Rhizobium etli CIAT 894]
          Length = 243

 Score =  264 bits (676), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/212 (44%), Positives = 141/212 (66%), Gaps = 1/212 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 29  MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 88

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 89  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFAVAEKKTEVIWNGPRAIVAKNRVKLLL 148

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++++PRGG + +++++ + +  F L   G L R P KF +I  G +E  ID+H 
Sbjct: 149 NLFLVAYSAIPRGGVLEVTLENPEFDARFKLTAKGKLMRLPPKFVEISTGAIEEAIDAHS 208

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           IQ YY +LLA E  + L      +  +V +A+
Sbjct: 209 IQPYYTVLLAQECGMTLDHSASAEE-LVFTAV 239


>gi|218675161|ref|ZP_03524830.1| hypothetical protein RetlG_28959 [Rhizobium etli GR56]
          Length = 232

 Score =  264 bits (675), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 96/213 (45%), Positives = 143/213 (67%), Gaps = 1/213 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 18  MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADSDAMDLIRTSALNA 77

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF   +K+ +V W G +  +++ R K+LL
Sbjct: 78  SVRLKFARLAFGASGSVGASIDTGEAERAAKDFALAEKKTEVIWNGPRAIVAKNRVKLLL 137

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF+VA++S+PRGG + +++++ + +  F+L   G + R P KF +I  G +E  ID+H 
Sbjct: 138 NLFLVAYSSIPRGGVLEVTLENPEFDAKFTLTAKGKMMRLPPKFVEISTGAIEEAIDAHS 197

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           IQ YY +LLA E  + L      D  +V +A++
Sbjct: 198 IQPYYAVLLAEECGMTLDHSASADE-LVFTAVV 229


>gi|150397806|ref|YP_001328273.1| hypothetical protein Smed_2608 [Sinorhizobium medicae WSM419]
 gi|150029321|gb|ABR61438.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 220

 Score =  263 bits (672), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/211 (44%), Positives = 142/211 (67%), Gaps = 1/211 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAKN    L+  DL ALLCSR+CHDIISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MAKNPNLTLTGHDLAALLCSRVCHDIISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+  +DF A +K+ +V+W G +  +++ R K+LL
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAAKDFAASEKKTEVTWNGPRAIIAKNRVKLLL 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NLF++A+ S+PRGG + I++++ + + +F+L   G + R P K  +++ G  E  +D+H 
Sbjct: 121 NLFLIAYGSIPRGGIIDITLENPEFDALFTLSAKGRMMRVPPKLVELISGTPEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           IQ YY +LLA E  + +   +     +V +A
Sbjct: 181 IQPYYTVLLAEEAGMAIDV-VSTGEEIVFTA 210


>gi|222149590|ref|YP_002550547.1| hypothetical protein Avi_3529 [Agrobacterium vitis S4]
 gi|221736572|gb|ACM37535.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 216

 Score =  262 bits (671), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/205 (42%), Positives = 141/205 (68%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M KN+   L+  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 1   MLKNVNLTLAGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +RLKF RLAFG +GSV + I  G+ E+ ++DF A +K+ +++W G +  +++ R K+L+
Sbjct: 61  SVRLKFARLAFGASGSVGASIDTGEAEKAVKDFAAAEKKTEITWNGPRAIIAKNRVKLLM 120

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL +VA+ ++PRGG + +++++ + +  F++   G + R P KF +I +G +E  +D+H 
Sbjct: 121 NLMLVAYGAIPRGGSLDVTLENPEYDAKFTIVAKGRMLRVPPKFAEICNGQMEEAVDAHS 180

Query: 181 IQFYYVILLAHENKIRLLPEIIDDH 205
           IQ YY +LLA E+ + L   I +  
Sbjct: 181 IQPYYTVLLADESSMELKYSIGEGE 205


>gi|153008901|ref|YP_001370116.1| hypothetical protein Oant_1571 [Ochrobactrum anthropi ATCC 49188]
 gi|239832475|ref|ZP_04680804.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|151560789|gb|ABS14287.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
 gi|239824742|gb|EEQ96310.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 209

 Score =  258 bits (659), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 127/204 (62%), Gaps = 2/204 (0%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           +   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  RL
Sbjct: 3   MPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARL 62

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ +
Sbjct: 63  QFARIAFGAAGSAGVQIDTGDAQNVATEYFK-NEKPEFTWEGTRVLLPKNKVKLLLNMLL 121

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183
           + +A++PRGG + + ++    E  F + + G + R P KF ++  G   E  ID+H +Q 
Sbjct: 122 IGNAAIPRGGSLAVRLEGGDTEPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQP 181

Query: 184 YYVILLAHENKIRLLPEIIDDHNV 207
           YY +LLA E  +++      +  V
Sbjct: 182 YYTLLLAEEAGMKISIHATAEDIV 205


>gi|294852910|ref|ZP_06793583.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026]
 gi|294821499|gb|EFG38498.1| hypothetical protein BAZG_01846 [Brucella sp. NVSL 07-0026]
          Length = 209

 Score =  257 bits (656), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 127/205 (61%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY +LLA E  +++      +  V
Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205


>gi|62290478|ref|YP_222271.1| hypothetical protein BruAb1_1585 [Brucella abortus bv. 1 str.
           9-941]
 gi|82700401|ref|YP_414975.1| hypothetical protein BAB1_1613 [Brucella melitensis biovar Abortus
           2308]
 gi|189024705|ref|YP_001935473.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19]
 gi|237815986|ref|ZP_04594983.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|254689778|ref|ZP_05153032.1| hypothetical protein Babob68_06304 [Brucella abortus bv. 6 str.
           870]
 gi|254694267|ref|ZP_05156095.1| hypothetical protein Babob3T_06314 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697922|ref|ZP_05159750.1| hypothetical protein Babob28_09475 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730812|ref|ZP_05189390.1| hypothetical protein Babob42_06334 [Brucella abortus bv. 4 str.
           292]
 gi|256258030|ref|ZP_05463566.1| hypothetical protein Babob9C_11918 [Brucella abortus bv. 9 str.
           C68]
 gi|260547009|ref|ZP_05822748.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260755310|ref|ZP_05867658.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260758531|ref|ZP_05870879.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260762355|ref|ZP_05874698.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884327|ref|ZP_05895941.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|261214574|ref|ZP_05928855.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|297248861|ref|ZP_06932579.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196]
 gi|62196610|gb|AAX74910.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616502|emb|CAJ11569.1| conserved hypothetical protein [Brucella melitensis biovar Abortus
           2308]
 gi|189020277|gb|ACD72999.1| hypothetical protein BAbS19_I15090 [Brucella abortus S19]
 gi|237789284|gb|EEP63495.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|260096059|gb|EEW79936.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668849|gb|EEX55789.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260672787|gb|EEX59608.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675418|gb|EEX62239.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260873855|gb|EEX80924.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|260916181|gb|EEX83042.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|297176030|gb|EFH35377.1| hypothetical protein BAYG_01829 [Brucella abortus bv. 5 str. B3196]
          Length = 209

 Score =  256 bits (655), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 128/205 (62%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182
           ++ + ++PRGG + + ++ S  +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGSDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY +LLA E  +++      +  V
Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205


>gi|148560434|ref|YP_001259465.1| hypothetical protein BOV_1541 [Brucella ovis ATCC 25840]
 gi|163843847|ref|YP_001628251.1| hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445]
 gi|225628032|ref|ZP_03786068.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|254702315|ref|ZP_05164143.1| hypothetical protein Bsuib55_15846 [Brucella suis bv. 5 str. 513]
 gi|254714813|ref|ZP_05176624.1| hypothetical protein BcetM6_16034 [Brucella ceti M644/93/1]
 gi|254717873|ref|ZP_05179684.1| hypothetical protein BcetM_16001 [Brucella ceti M13/05/1]
 gi|254719623|ref|ZP_05181434.1| hypothetical protein Bru83_08780 [Brucella sp. 83/13]
 gi|256032122|ref|ZP_05445736.1| hypothetical protein BpinM2_16003 [Brucella pinnipedialis
           M292/94/1]
 gi|256061644|ref|ZP_05451783.1| hypothetical protein Bneo5_14955 [Brucella neotomae 5K33]
 gi|256160318|ref|ZP_05458012.1| hypothetical protein BcetM4_15031 [Brucella ceti M490/95/1]
 gi|256255523|ref|ZP_05461059.1| hypothetical protein BcetB_14808 [Brucella ceti B1/94]
 gi|256370011|ref|YP_003107522.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915]
 gi|260169257|ref|ZP_05756068.1| hypothetical protein BruF5_13023 [Brucella sp. F5/99]
 gi|261219719|ref|ZP_05934000.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261222733|ref|ZP_05937014.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261322608|ref|ZP_05961805.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261325654|ref|ZP_05964851.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261752881|ref|ZP_05996590.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261758770|ref|ZP_06002479.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265984634|ref|ZP_06097369.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265989234|ref|ZP_06101791.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265998695|ref|ZP_06111252.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|306837742|ref|ZP_07470610.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653]
 gi|306844598|ref|ZP_07477185.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1]
 gi|148371691|gb|ABQ61670.1| conserved hypothetical protein [Brucella ovis ATCC 25840]
 gi|163674570|gb|ABY38681.1| Hypothetical protein BSUIS_A1653 [Brucella suis ATCC 23445]
 gi|225617195|gb|EEH14241.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|256000174|gb|ACU48573.1| hypothetical protein BMI_I1611 [Brucella microti CCM 4915]
 gi|260921317|gb|EEX87970.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260924808|gb|EEX91376.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261295298|gb|EEX98794.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261301634|gb|EEY05131.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261738754|gb|EEY26750.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261742634|gb|EEY30560.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|262553319|gb|EEZ09153.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264661431|gb|EEZ31692.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264663226|gb|EEZ33487.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|306275042|gb|EFM56805.1| Hypothetical protein BIBO1_1272 [Brucella sp. BO1]
 gi|306407198|gb|EFM63409.1| Hypothetical protein BROD_0550 [Brucella sp. NF 2653]
          Length = 209

 Score =  256 bits (654), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 127/205 (61%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY +LLA E  +++      +  V
Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205


>gi|306843048|ref|ZP_07475673.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2]
 gi|306286778|gb|EFM58324.1| Hypothetical protein BIBO2_2812 [Brucella sp. BO2]
          Length = 207

 Score =  255 bits (652), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/204 (37%), Positives = 126/204 (61%), Gaps = 2/204 (0%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           +   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  RL
Sbjct: 1   MPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASARL 60

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ +
Sbjct: 61  QFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNMLL 119

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183
           + + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H IQ 
Sbjct: 120 IGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSIQP 179

Query: 184 YYVILLAHENKIRLLPEIIDDHNV 207
           YY +LLA E  +++      +  V
Sbjct: 180 YYTLLLAEEAGMKISIHATAEDIV 203


>gi|225853071|ref|YP_002733304.1| hypothetical protein BMEA_A1650 [Brucella melitensis ATCC 23457]
 gi|256045214|ref|ZP_05448112.1| hypothetical protein Bmelb1R_12036 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256114166|ref|ZP_05454920.1| hypothetical protein Bmelb3E_15252 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263446|ref|ZP_05465978.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260565188|ref|ZP_05835672.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991647|ref|ZP_06104204.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265995485|ref|ZP_06108042.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225641436|gb|ACO01350.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260151256|gb|EEW86350.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|262766598|gb|EEZ12387.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263002431|gb|EEZ15006.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263093454|gb|EEZ17504.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409614|gb|ADZ66679.1| conserved hypothetical protein [Brucella melitensis M28]
 gi|326539317|gb|ADZ87532.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 209

 Score =  255 bits (651), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 126/205 (61%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E   +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY +LLA E  +++      +  V
Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205


>gi|254710629|ref|ZP_05172440.1| hypothetical protein BpinB_10236 [Brucella pinnipedialis B2/94]
 gi|261318201|ref|ZP_05957398.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261297424|gb|EEY00921.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
          Length = 209

 Score =  254 bits (650), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 128/205 (62%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY++LLA E  +++      +  V
Sbjct: 181 PYYMLLLAEEAGMKISIHATAEDIV 205


>gi|17986707|ref|NP_539341.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M]
 gi|17982330|gb|AAL51605.1| hypothetical protein BMEI0424 [Brucella melitensis bv. 1 str. 16M]
          Length = 207

 Score =  254 bits (650), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 125/204 (61%), Gaps = 2/204 (0%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           +   LS++DL ALLCSRICHDIISP+GAI+N LELL+E   +++ M LI+ S+ +A  RL
Sbjct: 1   MPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGSADEDAMALIKSSARNASARL 60

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ +
Sbjct: 61  QFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNMLL 119

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQF 183
           + + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q 
Sbjct: 120 IGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQP 179

Query: 184 YYVILLAHENKIRLLPEIIDDHNV 207
           YY +LLA E  +++      +  V
Sbjct: 180 YYTLLLAEEAGMKISIHATAEDIV 203


>gi|23502461|ref|NP_698588.1| hypothetical protein BR1598 [Brucella suis 1330]
 gi|161619538|ref|YP_001593425.1| hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365]
 gi|254704843|ref|ZP_05166671.1| hypothetical protein Bsuib36_13174 [Brucella suis bv. 3 str. 686]
 gi|260565915|ref|ZP_05836385.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261755539|ref|ZP_05999248.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|23348452|gb|AAN30503.1| conserved hypothetical protein [Brucella suis 1330]
 gi|161336349|gb|ABX62654.1| Hypothetical protein BCAN_A1633 [Brucella canis ATCC 23365]
 gi|260155433|gb|EEW90513.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261745292|gb|EEY33218.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
          Length = 209

 Score =  254 bits (648), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 127/205 (61%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ ++ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSNARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQ 182
           ++ + ++PRGG + + ++    +  F + + G + R P KF ++  G   E  ID+H +Q
Sbjct: 121 LIGNGAIPRGGSLAVRLEGGDTDPRFVITVKGRMLRVPPKFLELHSGAAPEEPIDAHSVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY +LLA E  +++      +  V
Sbjct: 181 PYYTLLLAEEAGMKISIHATAEDIV 205


>gi|319781796|ref|YP_004141272.1| hypothetical protein Mesci_2070 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167684|gb|ADV11222.1| Protein of unknown function DUF2328 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 209

 Score =  252 bits (643), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 136/206 (66%), Gaps = 2/206 (0%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMKLIRQSARNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS   LI  GD E V   F+  +++ +++W G +  L + + K+LLNL +VA
Sbjct: 65  ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGPRALLPKNKVKLLLNLILVA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185
           +A++PRGGK+++++++ + E  F+L   G + R P KF ++  G   E  ID+H +Q YY
Sbjct: 124 NAAIPRGGKLSVTLENLETEPRFALTSAGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211
            +LLA E  + +      +  V+ +A
Sbjct: 184 TLLLAREAGMTIAIHATPEEIVLSAA 209


>gi|13472495|ref|NP_104062.1| hypothetical protein mlr2813 [Mesorhizobium loti MAFF303099]
 gi|14023241|dbj|BAB49848.1| mlr2813 [Mesorhizobium loti MAFF303099]
          Length = 209

 Score =  248 bits (634), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS   LI  GD E V   F+  +++ +++W G +  L + + K+LLNL +VA
Sbjct: 65  ARIAFGAAGSAGMLIDTGDAEAVAIAFLK-NEKPELTWNGARALLPKNKVKLLLNLILVA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185
           +A++PRGGK+ +++++ + E   SL  +G + R P KF ++  G   E  ID+H +Q YY
Sbjct: 124 NAAIPRGGKLVVTLENLETEPRISLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211
            +LLA E  + +      +  V+ +A
Sbjct: 184 TLLLAREAGMTISIHATAEEIVLSAA 209


>gi|319408929|emb|CBI82586.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 212

 Score =  241 bits (615), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 85/205 (41%), Positives = 125/205 (60%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               +L   DL ALLCSRICHD+ISPIGAI N++EL DE G+E++ +QL+R S   A   
Sbjct: 2   TSTVSLKFADLTALLCSRICHDLISPIGAIQNAMELYDEGGVEEDALQLVRSSVSKASAC 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG +GSVDS I     EQV + ++A ++R  + W    + L +   K+LLNL 
Sbjct: 62  LQFFRLAFGASGSVDSQIDTRFAEQVAQQYMA-EERAILKWQAPTLLLPKNEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQ 182
           ++A+ ++ RGG++ +++    N   F  +I G + R P +F ++ +   +E TID+H IQ
Sbjct: 121 LIANTTISRGGEIVVTIAQDINTRSFRFEICGQILRIPPRFVELYNKKALEETIDAHAIQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
           FYY ILLA    + L     D H +
Sbjct: 181 FYYTILLAELTGMTLNIYETDSHVI 205


>gi|49475925|ref|YP_033966.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1]
 gi|49238733|emb|CAF27989.1| hypothetical protein BH12060 [Bartonella henselae str. Houston-1]
          Length = 212

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 128/210 (60%), Gaps = 3/210 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+R S  SA  R
Sbjct: 2   TLAVSLESTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRWSVASASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG+ G+    I    +EQV + ++  +++  + W    + L +   K+LLNL 
Sbjct: 62  LQFARLAFGFAGTSRGQIDTRSVEQVAQQYMK-EEKATLKWQIPALLLPKNEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ RGG++ + +   +N++ F  +I G   R P  F  + +G + E  ID+H IQ
Sbjct: 121 LIANATVSRGGEIVVMIVQGENQHSFRFEICGKTLRIPSHFIALYNGEIQEEFIDAHVIQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           FYY +LLA    +++      D  V+L + 
Sbjct: 181 FYYTMLLAQMTGMKININET-DSCVILEST 209


>gi|85713641|ref|ZP_01044631.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A]
 gi|85699545|gb|EAQ37412.1| hypothetical protein NB311A_03854 [Nitrobacter sp. Nb-311A]
          Length = 215

 Score =  241 bits (615), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 74/205 (36%), Positives = 113/205 (55%), Gaps = 5/205 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+       +  + LIR S+ +A  RL+F
Sbjct: 12  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDNPKPDDREFALDLIRKSAKTASARLQF 71

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GSV + I LGD + +       D ++ ++W   ++ L + R K+LLNL ++A
Sbjct: 72  CRLAFGAAGSVGAQIDLGDAQNMARGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIA 130

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +T+          F +   G  AR P+     +       +D+H +Q YY 
Sbjct: 131 QQTIPRGGVLTVDPLGEGEAMGFRITAAGQNARVPQPIADRLATGSSGVVDAHAVQPYYT 190

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    + +    ID   VV +A
Sbjct: 191 RLLADACGVSISL-AIDGDKVVATA 214


>gi|121602758|ref|YP_989298.1| hypothetical protein BARBAKC583_1020 [Bartonella bacilliformis
           KC583]
 gi|120614935|gb|ABM45536.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
          Length = 212

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 123/205 (60%), Gaps = 2/205 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSR+CHD+ISPIGAI N++EL DE   +++ +QL+R+S   A  R
Sbjct: 2   TLTASLKSTDLAALLCSRLCHDLISPIGAIQNAMELYDEGCADEDALQLVRISVAKASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  GSV   I    +EQV + ++A +++  + W    + L ++  K LLNL 
Sbjct: 62  LQFARLAFGNAGSVGCQIDTSFVEQVAQQYMA-EEKATLKWQAPSLLLPKDEVKFLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182
            +A+A++PRGG++ + +    +   F  +I G + +    F ++ +G   E  +D+H IQ
Sbjct: 121 FIANATVPRGGEIAMMILQDADTRSFRFEIYGKILKISPYFIELNNGKLPEEPVDAHTIQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
            YY  LLA  + +++     +DH +
Sbjct: 181 LYYTALLAEISAMKVSIHETNDHLI 205


>gi|27377302|ref|NP_768831.1| hypothetical protein blr2191 [Bradyrhizobium japonicum USDA 110]
 gi|27350445|dbj|BAC47456.1| blr2191 [Bradyrhizobium japonicum USDA 110]
          Length = 237

 Score =  240 bits (614), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
             ++L ALLCSR+CHD+ISP+GAI N LE+LD+       +  + LIR S+ +A  RL+F
Sbjct: 34  DMLELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPEDREFALDLIRKSAKTASARLQF 93

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    I  D +  ++W   ++ L + R K+LLN+ +VA
Sbjct: 94  CRLAFGAAGSSGAQIDLGDAQTMARGHIE-DGKCTITWNLPRLLLPKNRVKLLLNMLVVA 152

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +TI          F +   G+ AR P+   +++ G      D+H IQ YY 
Sbjct: 153 QHTIPRGGTLTIDPVGEGETMSFRITATGHNARLPQNIAELLSGERGPAADAHAIQPYYT 212

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    + +         +V ++
Sbjct: 213 RLLAQACGLTVTLAPEGAAIIVTAS 237


>gi|209886231|ref|YP_002290088.1| hypothetical protein OCAR_7117 [Oligotropha carboxidovorans OM5]
 gi|209874427|gb|ACI94223.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
          Length = 212

 Score =  239 bits (611), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            ++DL ALL SR+CHD+I+P+GAI N LE++D     ++    + LIR S++S   RL+F
Sbjct: 9   DALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQF 68

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+A+G  GS  + I LGD ++V    +  D + +++W    + L + R K+LLN+ ++A
Sbjct: 69  CRIAYGAAGSAGTQIDLGDAQKVARGHLE-DAKTKITWNLPHMLLPKNRVKLLLNMMVIA 127

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG++ I          F ++  G  AR P    + ++    +++ +H +Q YY 
Sbjct: 128 QQAIPRGGELVIDPLGEGETMGFRIRAVGQNAREPHGIAEQLNPENAASVTAHAVQPYYT 187

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA     ++     DD  V+ +A
Sbjct: 188 ALLAQACGFKVSMTKEDDAVVIATA 212


>gi|75674717|ref|YP_317138.1| hypothetical protein Nwi_0519 [Nitrobacter winogradskyi Nb-255]
 gi|74419587|gb|ABA03786.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 215

 Score =  234 bits (598), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 4/201 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+       +  + LIR S+ +A  RL+F
Sbjct: 12  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSARTASARLQF 71

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GSV + I LGD + + +     D ++ ++W   ++ L + R K+LLNL ++A
Sbjct: 72  CRLAFGAAGSVSAQIDLGDAQNIAKGHFE-DGKITLAWNLPRLLLPKNRVKLLLNLLVIA 130

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +TI          F +   G  AR  +   +++       + +H +Q YY 
Sbjct: 131 QQTIPRGGVLTIDPLGEGEAMGFQITAAGLNARVSQPVAELLASGSTGAVYAHAVQPYYT 190

Query: 187 ILLAHENKIRLLPEIIDDHNV 207
            LLA    I +      D  V
Sbjct: 191 RLLAEACGISISLVAEGDKVV 211


>gi|163868752|ref|YP_001609969.1| hypothetical protein Btr_1642 [Bartonella tribocorum CIP 105476]
 gi|161018416|emb|CAK01974.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 212

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 83/210 (39%), Positives = 128/210 (60%), Gaps = 3/210 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               +L  MDL ALLCSRICHD+ISP+GAI N++EL D+ G E+E +QL+RLS +SA  R
Sbjct: 2   TFAVSLKPMDLAALLCSRICHDLISPVGAIQNAMELYDDGGAEEEALQLVRLSVVSASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG+ G+    I     EQV + ++  + +  + W      L ++  K+LLNL 
Sbjct: 62  LQFARLAFGFAGASGGQIDTRAAEQVAQQYMQQE-KATLKWQAPSFLLQKDEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ RGG++   +   +N+  F  +I G   R P  F  +  G V E  ID+H IQ
Sbjct: 121 LIANATVSRGGEIVFMIVQQENKRSFRFEIFGKTLRIPPHFLALYHGEVKEELIDAHVIQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           FYY +LL+   ++++  +   DH +VL ++
Sbjct: 181 FYYTMLLSQRTEMKINIDE-KDHCIVLESV 209


>gi|299134357|ref|ZP_07027550.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2]
 gi|298591104|gb|EFI51306.1| Protein of unknown function DUF2328 [Afipia sp. 1NLS2]
          Length = 213

 Score =  232 bits (592), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            ++DL ALL SR+CHD+I+P+GAI N LE++D     ++    + LIR S++S   RL+F
Sbjct: 9   DALDLAALLSSRVCHDLINPVGAIVNGLEVMDSSNKAEDKEFALDLIRKSAVSTSARLQF 68

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+A+G  GS  + I LGD ++V    +  D + +++W    + L++ R K+LLN+ ++A
Sbjct: 69  CRIAYGAAGSAGTQIDLGDAQKVARGHLE-DGKTKLTWNLPHMLLAKNRVKLLLNMLVIA 127

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG++ I      +   F ++  G  AR P      ++    ++I +H +Q YY 
Sbjct: 128 QQAIPRGGELVIDPIGEGDTMGFRIRAVGANAREPHSIADQLNLENAASITAHAVQPYYT 187

Query: 187 ILLAHENKIRLLPEIIDDHNVVLS 210
            LLA     ++     +D  VV +
Sbjct: 188 ALLAQACGFKVGLTKEEDAVVVAT 211


>gi|240850929|ref|YP_002972329.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup]
 gi|240268052|gb|ACS51640.1| hypothetical protein Bgr_14420 [Bartonella grahamii as4aup]
          Length = 212

 Score =  231 bits (590), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 81/210 (38%), Positives = 132/210 (62%), Gaps = 3/210 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L+  DL ALLCSRICHD+ISP+GAI N++EL DE G E++ +QL+RLS  SA  R
Sbjct: 2   TLDISLNPTDLAALLCSRICHDLISPVGAIQNAMELYDEGGAEEDALQLVRLSVASAAAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG+ G+    I     EQV + ++  +++  + W    + L ++  K+LLNL 
Sbjct: 62  LQFARLAFGFAGASGGQIDTRAAEQVAQQYMK-EEKATLKWQASSLLLPKDEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+A++ RGG++ + +   +N+  F  ++ G   R P  F  +  G V E  ID+H IQ
Sbjct: 121 LIANATVSRGGEIVVMILQEENKRSFRFEVFGKTLRIPPHFLALFRGEVQEELIDAHVIQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           FYY +LL+   ++++  +  +DH +VL ++
Sbjct: 181 FYYTMLLSQMTEMKINIDE-NDHCIVLESV 209


>gi|49474505|ref|YP_032547.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse]
 gi|49240009|emb|CAF26424.1| hypothetical protein BQ09470 [Bartonella quintana str. Toulouse]
          Length = 212

 Score =  227 bits (579), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 3/210 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISP+GAI N++EL DE G +++ +QL+R +  SA  R
Sbjct: 2   TLAVSLKSTDLAALLCSRICHDLISPVGAIQNAMELYDEGGTDEDTLQLVRWAVASASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F+RLAFG++G+  S +     EQV + ++  +++  + W    + L +   K+LLNL 
Sbjct: 62  LQFLRLAFGFSGAAGSQVDTRSAEQVAQQYMK-EEKATLKWQAPALLLPKNEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQ 182
           ++A+ +  RGG++ + +   + +  F  +I G   R P  F  + +G + E  ID+  IQ
Sbjct: 121 LIANTTASRGGEIVVMILQDEYKRSFRFEICGKTLRIPAHFVALYNGRIQEELIDAQVIQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           FYY +LLA    + +  E      +VL + 
Sbjct: 181 FYYTMLLAEMTAMEINIEETAS-CIVLEST 209


>gi|39934696|ref|NP_946972.1| hypothetical protein RPA1626 [Rhodopseudomonas palustris CGA009]
 gi|192290212|ref|YP_001990817.1| hypothetical protein Rpal_1816 [Rhodopseudomonas palustris TIE-1]
 gi|39648546|emb|CAE27067.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
 gi|192283961|gb|ACF00342.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 218

 Score =  226 bits (577), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 119/205 (58%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    ++LIR S+ +A  RL+F
Sbjct: 15  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALELIRKSAKTASARLQF 74

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    +  D + +++W   ++ L++ R K+LLN+ ++A
Sbjct: 75  CRLAFGAAGSAGAQIDLGDAQNMARGHLEDD-KTKLTWNLPRLLLAKNRVKLLLNMLVIA 133

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +TI      +   F +   G  AR P     +++G     I+SH +Q YY 
Sbjct: 134 QQTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYT 193

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    + +      D  VV ++
Sbjct: 194 RLLAQACGLTVSLAPEGDTMVVTAS 218


>gi|328542567|ref|YP_004302676.1| hypothetical protein SL003B_0947 [polymorphum gilvum SL003B-26A1]
 gi|326412313|gb|ADZ69376.1| hypothetical protein SL003B_0947 [Polymorphum gilvum SL003B-26A1]
          Length = 214

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 120/207 (57%), Gaps = 5/207 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL 64
           +LSS+DL AL+ SRICHDIISP+GAI N LE+LDE G   + +  M LIR S+  A  +L
Sbjct: 6   DLSSLDLSALVSSRICHDIISPVGAIINGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RLAFG  GS  + I LGD + V   F+  +++  + W  ++  + +   K+LLNL +
Sbjct: 66  QFARLAFGAAGSAGAEIDLGDAQVVASGFME-NEKSNLIWQVDRHLMPKNFVKLLLNLVL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           +A+  +PRGG +T+S+       +F+L+  G   R P    + + G     +D+H +Q  
Sbjct: 125 IANQCVPRGGDITVSMTGEPAAPVFTLEAKGLNPRIPLGMQETLGGQEPERVDAHSVQPI 184

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211
           Y  LLA E  + +     DD  V L+A
Sbjct: 185 YTFLLARECGMTISLSK-DDDVVRLTA 210


>gi|319898470|ref|YP_004158563.1| hypothetical protein BARCL_0294 [Bartonella clarridgeiae 73]
 gi|319402434|emb|CBI75975.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 212

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 127/210 (60%), Gaps = 3/210 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE G +++ +QL+RLS  +A  R
Sbjct: 2   TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGGADEDALQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G V+  I     +Q+ + ++  +++  + W    + L ++  K+LLNL 
Sbjct: 62  LQFARLAFGSAGGVEDKIDTDFAKQISQQYMK-EEKATLKWQASSLLLQKDEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-IDSHDIQ 182
           ++A+  +   G++++ +    N+ +F  +I G + R P +F ++ +G +    ID+H +Q
Sbjct: 121 LIANTIVSHNGEISVIILQDTNKRVFRFEICGKILRTPSRFIELYNGQMSEELIDAHVVQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            YY ILLA    +++      D  ++L ++
Sbjct: 181 LYYTILLAEITTMKISIHETSD-CIILESV 209


>gi|220921682|ref|YP_002496983.1| hypothetical protein Mnod_1690 [Methylobacterium nodulans ORS 2060]
 gi|219946288|gb|ACL56680.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 215

 Score =  225 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 6/197 (3%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L++    G+ D  + LIR S+  A  RL+F R+AFG  G
Sbjct: 16  CSRVCHDVISPVGAIVNGLEVLEDENDAGMRDFAIDLIRKSARQASARLQFARIAFGAAG 75

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           SV + I L D E V       D++ +++W+  +    + + K+LLNL ++A  ++PRGG 
Sbjct: 76  SVGATIDLADAEGVARGLFG-DEKTKLTWSAPRALFPKNKVKLLLNLVIIAVTAIPRGGV 134

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENK 194
           + ++V       +F L   G+ AR P     ++ G  E  T+D+H +Q YY  L+A    
Sbjct: 135 IDVAVTGEAEAPVFVLTCKGSHARIPAHVEALMAGTPESGTVDAHGVQPYYAGLVARAAG 194

Query: 195 IRLLPEIIDDHNVVLSA 211
           +++    ID   V + A
Sbjct: 195 MQV-GFAIDGDTVTIRA 210


>gi|170742948|ref|YP_001771603.1| hypothetical protein M446_4839 [Methylobacterium sp. 4-46]
 gi|168197222|gb|ACA19169.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 215

 Score =  225 bits (574), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 5/190 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L   D+ G+ D  + LIR S+  A  RL+F R+AFG  G
Sbjct: 16  CSRVCHDVISPVGAIVNGLEVLEDEDDPGMRDFAIDLIRKSAKQASARLQFARIAFGAAG 75

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           SV + I L D E V     + D++ +++W+  +    + + K+LLNL ++A  ++PRGG 
Sbjct: 76  SVGATIDLADAESVARGLFS-DEKTKLAWSAPRALFPKNKVKLLLNLVVIAVTTIPRGGL 134

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENK 194
           + ++V       +F L   G+ AR P     ++ G+ E  T+D+H +Q YY  L+A    
Sbjct: 135 IDVAVTGEAEAPVFVLTCRGSHARIPAHVEALIAGSPESGTVDAHGVQPYYAGLVARAAG 194

Query: 195 IRLLPEIIDD 204
           + +   I  D
Sbjct: 195 MTVSFGIDGD 204


>gi|316935206|ref|YP_004110188.1| hypothetical protein Rpdx1_3895 [Rhodopseudomonas palustris DX-1]
 gi|315602920|gb|ADU45455.1| Protein of unknown function DUF2328 [Rhodopseudomonas palustris
           DX-1]
          Length = 218

 Score =  225 bits (573), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 118/205 (57%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F
Sbjct: 15  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSAKTASARLQF 74

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    +  D + +++W   ++ L++ R K+LLN+ ++A
Sbjct: 75  CRLAFGAAGSAGAQIDLGDAQNMARGHLEDD-KTKLTWNLPRLLLAKNRVKLLLNMLIIA 133

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +TI      +   F +   G  AR P     +++G     I+SH +Q YY 
Sbjct: 134 QQTIPRGGTLTIDPIGEGDNLSFRIVAAGINARTPHNIVDLLNGTQSGPIESHGVQPYYT 193

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    + +      D  VV ++
Sbjct: 194 RLLAQACGLTVSLAPEADTMVVTAS 218


>gi|115526278|ref|YP_783189.1| hypothetical protein RPE_4285 [Rhodopseudomonas palustris BisA53]
 gi|115520225|gb|ABJ08209.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 224

 Score =  224 bits (572), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 75/205 (36%), Positives = 117/205 (57%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            S++L ALLCSR+CHD+ISP+GAI N LE+LD+    ++    + LIR S+ +A  RL+F
Sbjct: 21  DSLELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKPEDREFALDLIRKSAKTASARLQF 80

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD   +    +  D + ++ W   ++ + + RAK+LLN+ ++A
Sbjct: 81  CRLAFGAAGSAGAQIDLGDALNMARGHLEDD-KTKIEWNLPRVLMPKNRAKLLLNMLVIA 139

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +T+          F +  NG  AR P    +++    +S ID+H +Q YY 
Sbjct: 140 QQTIPRGGVLTVDPIGEGEAMAFRVAANGLNARTPHNVVEMLSTGPKSAIDAHAVQPYYT 199

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    +R+      D  VV ++
Sbjct: 200 RLLAEACGLRVSLAPEGDAVVVTAS 224


>gi|319405235|emb|CBI78840.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 212

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 125/210 (59%), Gaps = 3/210 (1%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE   +++ +QL+RLS  +A  R
Sbjct: 2   TLAVSLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDALQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  G ++  I     EQV + ++  +++  + W      L ++  K+LLNL 
Sbjct: 62  LQFARMAFGSIGGIEDKIDTSFAEQVSQQYMK-EEKAVLKWQAASFLLPKDEVKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182
           ++A+A++ +GG++ + +    ++ +F  KI G + R P  F ++ +G +    +D+   Q
Sbjct: 121 LIANATVVQGGEIGVVILQDTDQRLFRFKICGKMLRVPSHFIELYNGTMPKELVDARVAQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            YY +LLA    +++      D  ++L ++
Sbjct: 181 LYYTVLLAEITAMKISIHETSD-CIILESI 209


>gi|110634560|ref|YP_674768.1| hypothetical protein Meso_2211 [Mesorhizobium sp. BNC1]
 gi|110285544|gb|ABG63603.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 209

 Score =  224 bits (571), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 133/206 (64%), Gaps = 2/206 (0%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ MQLIR S+++A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGTDEDAMQLIRASAVNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS    I  GD E V   FI  +++  + W G +  L + R K+LLNL ++A
Sbjct: 65  ARIAFGAAGSAGMQIDTGDAEAVATAFI-RNEKPDLEWIGGRAFLPKNRVKLLLNLLLIA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185
           +A++PRGGK+T+ +++     +F++  +G + R P KF  +  G  ++  ID+H +QFYY
Sbjct: 124 NAAIPRGGKLTVRLENLDASPLFTITAHGPMVRVPAKFLDLHAGRQLDEAIDAHSVQFYY 183

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211
            +LLA E    +      +  V+ +A
Sbjct: 184 TLLLARETGATISIHASPEEIVLKAA 209


>gi|319403799|emb|CBI77383.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 212

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 76/202 (37%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE   +++V+QL+RLS  +A  R
Sbjct: 2   TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G V+  +     EQV + ++  +++  + W      L ++  K+LLNL 
Sbjct: 62  LQFARLAFGAVGGVEDKVDTIFAEQVSQQYMK-EEKAILKWQAASFLLPKDEIKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182
           ++A+A++ +GG++ + +  + ++ +F  +I G + R P  F ++ +G   E  ID+   Q
Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFEIRGKILRIPSHFIELYNGKMPEELIDARIAQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDD 204
           FYY ILLA    +++      D
Sbjct: 181 FYYTILLAEITAMKISIHETSD 202


>gi|146338552|ref|YP_001203600.1| putative Signal transduction histidine kinase [Bradyrhizobium sp.
           ORS278]
 gi|146191358|emb|CAL75363.1| Conserved hypothetical protein; putative Signal transduction
           histidine kinase [Bradyrhizobium sp. ORS278]
          Length = 220

 Score =  222 bits (565), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 77/205 (37%), Positives = 118/205 (57%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
            +++L ALLCS++CHD+ISP+GAI N LE+LD+       D  ++LIR S+ +A  RL+F
Sbjct: 17  DTLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQF 76

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    I  D +  ++W   ++ L + R K+LLN+ +VA
Sbjct: 77  CRLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVA 135

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +TI          F +   G  AR P+    ++ G ++STID+H +Q YY 
Sbjct: 136 QQTIPRGGVLTIDPIGEGESMSFRVSATGLNARLPQNIVNLLGGELQSTIDAHAVQPYYT 195

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    +++         VV +A
Sbjct: 196 RLLADACGLKVTLAADGAAMVVQAA 220


>gi|148257789|ref|YP_001242374.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1]
 gi|146409962|gb|ABQ38468.1| hypothetical protein BBta_6560 [Bradyrhizobium sp. BTAi1]
          Length = 220

 Score =  221 bits (564), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
            +++L ALLCS++CHD+ISP+GAI N LE+LD+       D  ++LIR S+ +A  RL+F
Sbjct: 17  DTLELAALLCSKVCHDLISPVGAIVNGLEVLDDNPKPEDRDFALELIRKSAKTASARLQF 76

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    I  D +  ++W   ++ L + R K+LLN+ +VA
Sbjct: 77  CRLAFGAAGSAGAQIDLGDAQTMARGHIE-DAKTSITWNLPRLLLPKNRVKLLLNMMVVA 135

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +T+          F +   G  AR P+    ++ G  +STID+H +Q YY 
Sbjct: 136 QQTIPRGGVLTVDPIGEGETMSFRVAATGLNARLPQNIVNLLAGAQQSTIDAHAVQPYYT 195

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    +++      +  VV +A
Sbjct: 196 RLLADACGLKVTLAADGEAMVVQAA 220


>gi|90425721|ref|YP_534091.1| hypothetical protein RPC_4248 [Rhodopseudomonas palustris BisB18]
 gi|90107735|gb|ABD89772.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 219

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 70/205 (34%), Positives = 115/205 (56%), Gaps = 4/205 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F
Sbjct: 16  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSPKQEDREFALDLIRKSARTASARLQF 75

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    +  D + ++ W   +I L + + K+LLN+ ++A
Sbjct: 76  CRLAFGAAGSAGAQIDLGDAQNMARGHLEDD-KTKIEWNLPRILLPKNKVKLLLNMLVIA 134

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +T+      +   F +  +G  AR       ++ G    +ID+H +Q YY 
Sbjct: 135 QQTIPRGGVLTVEAVGEGDAMGFRVAASGLNARTQTNIVDMLSGAHAGSIDAHAVQPYYT 194

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA      +      +  VV ++
Sbjct: 195 RLLAQACGFSVSLAPAGEAVVVTAS 219


>gi|91978143|ref|YP_570802.1| hypothetical protein RPD_3679 [Rhodopseudomonas palustris BisB5]
 gi|91684599|gb|ABE40901.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 217

 Score =  220 bits (562), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 119/202 (58%), Gaps = 4/202 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F
Sbjct: 14  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQF 73

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    +  D++ +++W   ++ L++ R K+LLN+ ++A
Sbjct: 74  CRLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKIAWNLPRLLLAKNRVKLLLNMLIIA 132

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +TI      +   F +   G  AR P+   +++ G+    I+SH +Q YY 
Sbjct: 133 QQTIPRGGTLTIDPVGEGDNLSFRVIAAGLNARMPQNIAEMLSGSHAGPIESHGVQPYYT 192

Query: 187 ILLAHENKIRLLPEIIDDHNVV 208
            LLA    + +      D  VV
Sbjct: 193 RLLAQACGLAVTLAPEGDTMVV 214


>gi|86751029|ref|YP_487525.1| hypothetical protein RPB_3921 [Rhodopseudomonas palustris HaA2]
 gi|86574057|gb|ABD08614.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 217

 Score =  220 bits (560), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 4/202 (1%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+   +++    + LIR S+ +A  RL+F
Sbjct: 14  DALELAALLCSRVCHDLISPVGAIVNGLEVLDDSSKQEDRDFALDLIRKSARTASARLQF 73

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + +    +  D++ +++W   ++ L++ R K+LLN+ ++A
Sbjct: 74  CRLAFGAAGSAGAQIDLGDAQNMARGHLE-DEKTKLAWNLPRVLLAKNRVKLLLNMLIIA 132

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +T+      +   F +   G  AR P+   + ++G+    ++SH +Q YY 
Sbjct: 133 QQTIPRGGTLTVDPVGEGDNLSFRVVAAGLNARMPQNIVEKLNGSHAGPVESHGVQPYYT 192

Query: 187 ILLAHENKIRLLPEIIDDHNVV 208
            LLA    + +      +  VV
Sbjct: 193 RLLAESCGLAVTLAPEGEAMVV 214


>gi|319406805|emb|CBI80438.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 212

 Score =  219 bits (558), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 77/202 (38%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +  +L S DL ALLCSRICHD+ISPIGAI N++EL DE   +++V+QL+RLS  +A  R
Sbjct: 2   TLAISLKSTDLAALLCSRICHDLISPIGAIQNAMELYDEGNADEDVLQLVRLSVANASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G V+  I     EQV + ++  +++  + W      L ++  K+LLNL 
Sbjct: 62  LQFARLAFGAIGGVEDKIDTIFAEQVSQQYMK-EEKAILKWQAASFLLPKDEIKLLLNLL 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182
           ++A+A++ +GG++ + +  + ++ +F   I G + R P  F ++ +G   E  ID+   Q
Sbjct: 121 LIANATVSQGGEIGVVILQNTDQRLFRFDIRGKILRVPSHFIELYNGKMPEELIDARIAQ 180

Query: 183 FYYVILLAHENKIRLLPEIIDD 204
           FYY ILLA    ++++     D
Sbjct: 181 FYYTILLAEITAMKIIIHETSD 202


>gi|92118838|ref|YP_578567.1| hypothetical protein Nham_3377 [Nitrobacter hamburgensis X14]
 gi|91801732|gb|ABE64107.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 215

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 5/205 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF 66
            +++L ALLCSR+CHD+ISP+GAI N LE+LD+       +  + LIR S+ +A  RL+F
Sbjct: 12  DTLELAALLCSRVCHDLISPVGAIVNGLEVLDDDPKPDDREFALDLIRKSAKTASARLQF 71

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  GS  + I LGD + + +     D ++ ++W   ++ L + R K+LLNL ++A
Sbjct: 72  CRLAFGAAGSAGAQIDLGDAQNMAKGHFE-DGKITIAWNLPRLLLPKNRVKLLLNLLVIA 130

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++PRGG +T+          F +   G  AR  +    ++       +D+H +Q YY 
Sbjct: 131 QQTIPRGGVLTVDPLGEGEAMGFQITAAGLNARLSQTTADLLASGPAGAVDAHAVQPYYT 190

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSA 211
            LLA    I +     D   VV +A
Sbjct: 191 RLLAEACGIGISL-AADGEKVVATA 214


>gi|260462504|ref|ZP_05810711.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259031700|gb|EEW32969.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 209

 Score =  217 bits (553), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 2/206 (0%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F LS+ DL ALLCSR+CHDIISP+GAI+N LELLDE G +++ M+LIR S+ +A  RL+F
Sbjct: 5   FTLSAPDLAALLCSRVCHDIISPVGAINNGLELLDEGGADEDAMRLIRQSARNASARLQF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG  GS   +I  GD E V   F+  +++ ++ W G +  L + + K+LLNL +VA
Sbjct: 65  ARIAFGAAGSAGMMIDTGDAEAVAIAFLK-NEKPELVWNGIRALLPKNKVKLLLNLLLVA 123

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY 185
           +A++PRGGK+ +++++ + E  FSL  +G + R P KF ++  G   E  ID+H +Q YY
Sbjct: 124 NAAIPRGGKLVVTLENLETEPRFSLSASGPMLRVPPKFLELHSGHKPEEPIDAHSVQPYY 183

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211
            +LLA E  + +      +  V+ +A
Sbjct: 184 TLLLAREAAMTISIHATAEEIVLSAA 209


>gi|158422707|ref|YP_001523999.1| hypothetical protein AZC_1083 [Azorhizobium caulinodans ORS 571]
 gi|158329596|dbj|BAF87081.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 221

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 80/215 (37%), Positives = 122/215 (56%), Gaps = 6/215 (2%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
              +   +S +DL ALLCSR+CHD+ISP+GAI N LE+L++     + +  + LI  S+ 
Sbjct: 7   GSTVTLKVSPLDLAALLCSRVCHDVISPVGAIVNGLEVLEDEDAPDMREVALDLISKSAR 66

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            A  RL+F RLAFG  GS  + I LGD E V+   +  D R ++ W   +  L + R K+
Sbjct: 67  QASARLQFTRLAFGAAGSARATIDLGDAENVVRGMME-DARTKIDWMLPRELLPKNRVKL 125

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTID 177
           LLNL ++A  ++PRGG + ++   +  +  FS+   G  AR P+    ++DG   E  +D
Sbjct: 126 LLNLMLLAGMTVPRGGVIQVAAVGAAPDMGFSIASTGVSARIPQAILPLLDGVPPEGGLD 185

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +H +Q +Y  LLA +  + +L    D   V LSAL
Sbjct: 186 AHAVQPFYAGLLAQDCGL-VLGFSQDGETVTLSAL 219


>gi|296444665|ref|ZP_06886629.1| Protein of unknown function DUF2328 [Methylosinus trichosporium
           OB3b]
 gi|296257933|gb|EFH04996.1| Protein of unknown function DUF2328 [Methylosinus trichosporium
           OB3b]
          Length = 228

 Score =  214 bits (545), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 73/208 (35%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63
           F L  MDL ALL SR+CHD+ISP+GAI N LE+L+   +  +    + LI+ S+  A  R
Sbjct: 4   FALDPMDLAALLSSRVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSAAEASSR 63

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  GS  + I  GD E V    +A D+R ++ W+  ++ +S+ + K+LLNL 
Sbjct: 64  LQFCRLAFGAAGSKGAAIDTGDAEHVTRQLLA-DERTRLEWSVPRVLMSKNKVKLLLNLC 122

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182
           ++A A++PRGG +++S    +++  F++   G  AR       ++ G  E   +D+  IQ
Sbjct: 123 LIADATIPRGGVISVSSAGGEDDLSFTIVAKGTNARVAAAIPALLAGTPEDGAVDARAIQ 182

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLS 210
            YY  L+A  + + +    I +   +++
Sbjct: 183 AYYAGLVAEASGLEVEISTIPEQVTIIA 210


>gi|304394503|ref|ZP_07376424.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130]
 gi|303293413|gb|EFL87792.1| putative Signal transduction histidine kinase [Ahrensia sp. R2A130]
          Length = 211

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 126/206 (61%), Gaps = 5/206 (2%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLK 65
           LS +DL AL+ SR+CHDIISP+GA+ N LE+L+E     ++   M+LI  S+ +A  +LK
Sbjct: 7   LSPLDLAALIASRVCHDIISPVGALANGLEVLEEEDSEEMKAFAMELIHKSAKTASAKLK 66

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG +GS  S I  G+ E+++  ++  + + + +W G +  + + R K+LLNL ++
Sbjct: 67  FCRIAFGASGSAGSSIDTGEAEEMVGLYMNSE-KAEYTWEGSRSFVPKNRVKLLLNLLLI 125

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           +  ++PRGG V + +        F+L+  G  AR P  F  +++G VE  I +H +Q YY
Sbjct: 126 SLGAIPRGGNVGVQIHGEGETATFTLRCVGPKARVPADFVDMMNGTVEGDITAHAVQPYY 185

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA 211
            ++LA +  + L   +++  +VV +A
Sbjct: 186 TVMLAQDCGLELGA-VLEGEDVVFTA 210


>gi|254473075|ref|ZP_05086473.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
 gi|211957796|gb|EEA92998.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
          Length = 218

 Score =  208 bits (529), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 81/203 (39%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRL 64
            LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L
Sbjct: 6   ELSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGNEDMADFAMDLIRKSARQASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RLAFG  GS  + I LGD ++V   +++ +++  + WT  ++ L + + K++LNL +
Sbjct: 66  QFARLAFGAAGSAGASIDLGDAQEVAVGYMS-NEKANLEWTMPRLLLPKNQVKLILNLLL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           + +  +PRGG +TIS++  ++   F LK  G  AR P+  ++I+ G     +D+H +Q  
Sbjct: 125 LMNQCVPRGGTITISMEGDESAPNFLLKAEGTNARIPQVVSEILSGQEPERVDAHTVQPI 184

Query: 185 YVILLAHENKIRLLPEIIDDHNV 207
           Y +LLA E  + +  E   D  +
Sbjct: 185 YAVLLAGEAGLNIELEKDGDAVI 207


>gi|307944607|ref|ZP_07659947.1| putative Signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
 gi|307772356|gb|EFO31577.1| putative Signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
          Length = 214

 Score =  207 bits (527), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL 64
            L S+DL AL+ SR+CHDIISP+GAI N LE+LDE G ED     M LIR S+  A  +L
Sbjct: 6   ELPSLDLSALVASRVCHDIISPVGAITNGLEVLDEDGAEDMRDFAMDLIRKSARQASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RLAFG  GS  + I LGD + V   F+  +++  + W   +  + +   K+LLNL +
Sbjct: 66  QFARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLDWQVTRHLMPKNYVKLLLNLIL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           +A+  +PRGG + ++++   +   F L  +G   R P    + ++G     +D+H +Q  
Sbjct: 125 IANQCVPRGGTIKVTMEGEPSSPSFELVASGQNPRIPIGMKETLEGTEPERVDAHSVQPI 184

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211
           Y  LLA E    ++    ++   + ++
Sbjct: 185 YTFLLAKECGSAVVINKEEEQVRITTS 211


>gi|118588302|ref|ZP_01545711.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614]
 gi|118439008|gb|EAV45640.1| hypothetical protein SIAM614_23512 [Stappia aggregata IAM 12614]
          Length = 214

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 77/211 (36%), Positives = 123/211 (58%), Gaps = 5/211 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL 64
            LSS+DL AL+ SR+CHDIISP+GAI N LE+LDE G   + +  M LIR S+  A  +L
Sbjct: 6   ELSSLDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F RLAFG  GS  + I LGD + V   F+  +++  ++W   +  + +   K+LLNL +
Sbjct: 66  QFARLAFGAAGSAGAEIDLGDAQVVATGFME-NEKSDLNWQLSRHLMPKNYVKLLLNLIL 124

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           +A+  +PRGG++ + ++       F+L+ +G   R P    + + G     +D+H +Q  
Sbjct: 125 IANQCVPRGGEIKVEMEGDPQSPAFTLQASGLNPRIPLGMKETLGGEEPERVDAHSVQPI 184

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y +LLA E  + L  +   +  V ++ALL +
Sbjct: 185 YTLLLARECGMVLTIDKQ-EELVKITALLAE 214


>gi|154252620|ref|YP_001413444.1| hypothetical protein Plav_2173 [Parvibaculum lavamentivorans DS-1]
 gi|154156570|gb|ABS63787.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 222

 Score =  205 bits (521), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 65/212 (30%), Positives = 117/212 (55%), Gaps = 5/212 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M  +   ++S+++L AL+CSR+CHD+ISP+GAI N LE+L   D+  ++   M+LI  S+
Sbjct: 1   MDMSETNDVSALELAALMCSRVCHDVISPVGAIINGLEVLADDDDPEMKAHAMELITKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
             A  +L+F RL FG  GS  + + L D + V E  + + +R  ++W      + ++  K
Sbjct: 61  AQASAKLQFARLCFGAAGSASAELDLQDAKAVAEGLM-MGERAALTWNAPAATIGKDYVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-I 176
           +LLN+ ++  A++PRGG+V +SV     +    ++  G  AR PE+  + + G      +
Sbjct: 120 LLLNMILIGMAAIPRGGEVAVSVDGELAKPTLRIRSTGQAARIPEETAKFLGGRSPDRFL 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           D+   Q Y+  L+A    + +   +  +  V+
Sbjct: 180 DARAAQPYFTGLVARSLGLSIDARMDGEAFVI 211


>gi|254500736|ref|ZP_05112887.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11]
 gi|222436807|gb|EEE43486.1| hypothetical protein SADFL11_772 [Labrenzia alexandrii DFL-11]
          Length = 205

 Score =  204 bits (520), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 118/204 (57%), Gaps = 5/204 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMR 68
           MDL AL+ SR+CHDIISP+GAI N LE+LDE G   + +  M LIR S+  A  +L+F R
Sbjct: 1   MDLAALVASRVCHDIISPVGAITNGLEVLDEEGSEDMREFAMDLIRKSARQASAKLQFAR 60

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           LAFG  GS  + I LGD + V   F+  +++  ++W  E+  + +   K+LLNL ++A+ 
Sbjct: 61  LAFGAAGSAGAEIDLGDAQVVATGFME-NEKSNLNWQLERHLMPKNFVKLLLNLILIANQ 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
            +PRGG++ + +  +     F+L   G   R P    + + G     +D+H +Q  Y +L
Sbjct: 120 CVPRGGEIKVEMSGTPQSPSFTLNAAGLNPRIPLGMKETLSGEEPERVDAHSVQPIYSLL 179

Query: 189 LAHENKIRLLPEIIDDHNVVLSAL 212
           LA E  + L  +  D+  V ++AL
Sbjct: 180 LARECGMELTIDK-DEDCVKITAL 202


>gi|218529783|ref|YP_002420599.1| hypothetical protein Mchl_1808 [Methylobacterium chloromethanicum
           CM4]
 gi|218522086|gb|ACK82671.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 246

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 5/218 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+ N    L ++DL ALLCSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+
Sbjct: 1   MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V +   A D++ Q++W+  +    + + K
Sbjct: 61  RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176
           +LLNL ++A +++PRGG + ++V    +   F L+  G+ AR P     ++ G  E  T+
Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D+H I  +Y  L+A    + +   I  D   V +   E
Sbjct: 180 DAHGILPFYAGLVARAAAMDVRFTIEGDEVTVTATPTE 217


>gi|163850955|ref|YP_001638998.1| hypothetical protein Mext_1528 [Methylobacterium extorquens PA1]
 gi|254560648|ref|YP_003067743.1| hypothetical protein METDI2193 [Methylobacterium extorquens DM4]
 gi|163662560|gb|ABY29927.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
 gi|254267926|emb|CAX23794.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 246

 Score =  202 bits (515), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 5/218 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+ N    L ++DL ALLCSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+
Sbjct: 1   MSGNSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V +   A D++ Q++W+  +    + + K
Sbjct: 61  RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176
           +LLNL ++A +++PRGG + ++V    +   F L+  G+ AR P     ++ G  E  T+
Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D+H I  +Y  L+A    + +   I  D   V +   E
Sbjct: 180 DAHGILPFYAGLVARAAAMDVRFTIEGDEVTVTATPTE 217


>gi|240138087|ref|YP_002962559.1| hypothetical protein MexAM1_META1p1420 [Methylobacterium extorquens
           AM1]
 gi|240008056|gb|ACS39282.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 246

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 125/218 (57%), Gaps = 5/218 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+      L ++DL ALLCSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+
Sbjct: 1   MSGTSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V +   A D++ Q++W+  +    + + K
Sbjct: 61  RTASARIQFARIAFGAAGSAGASIDLADAEKVSKAMFA-DEKTQIAWSAPQALFPKNKVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176
           +LLNL ++A +++PRGG + ++V    +   F L+  G+ AR P     ++ G  E  T+
Sbjct: 120 LLLNLVVIASSAIPRGGLIDVAVTGGGDAPRFVLRAKGSHARIPPHVEGLIAGTPEGGTV 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D+H I  +Y  L+A    + +   I  D   V +   E
Sbjct: 180 DAHGILPFYAGLVARAAAMDVRFTIEGDEVTVTATPTE 217


>gi|90419034|ref|ZP_01226945.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337114|gb|EAS50819.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 208

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 61/192 (31%), Positives = 112/192 (58%), Gaps = 3/192 (1%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           ++CHDIISP+  I + LELLD++  + E M+L+R S  SA+ +L+F R+AFG  GS  + 
Sbjct: 19  KLCHDIISPVFGIQSGLELLDDMPNDPESMELVRHSLKSAVAKLQFARIAFGAAGSQTAT 78

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140
           I L D + V   ++   ++  + W GE   +++   KI+LNL ++A+AS+ RGG++ + +
Sbjct: 79  IDLNDAKTVANGYM-NHEKAAIVWEGEPGYVAKNFVKIILNLIVLANASISRGGEIKVVI 137

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLP 199
           + S +    +++  G+  R   +   +++G+V    +D+  IQ YY + LA E+ + +  
Sbjct: 138 E-SIDPPRATVRATGDRIRIQPRLMALLNGDVAQEAMDAQTIQPYYTLFLAQESGLTVAH 196

Query: 200 EIIDDHNVVLSA 211
           E  +   +   A
Sbjct: 197 EKTEGSVLFTVA 208


>gi|298292567|ref|YP_003694506.1| hypothetical protein Snov_2592 [Starkeya novella DSM 506]
 gi|296929078|gb|ADH89887.1| Protein of unknown function DUF2328 [Starkeya novella DSM 506]
          Length = 215

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 6/197 (3%)

Query: 19  CSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+LD+     ++   + LI  S+  A  RL+F RLAFG  G
Sbjct: 17  CSRVCHDVISPVGAIVNGLEVLDDEDDPSMKAFALDLIAKSAKQASARLQFARLAFGAAG 76

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I  GD E+V   FI  D R  V W   ++   + + K+LLNL +VA +++PRGGK
Sbjct: 77  SAGAQIDTGDAEKVARGFIEDD-RTSVEWHVPRVLSPKNKVKLLLNLMVVATSTIPRGGK 135

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHEN 193
           + +      +E  F L   G+ +R P     ++ G       +D+H IQ +Y  LLA   
Sbjct: 136 ILVIATGEGDEGGFRLTTEGSHSRIPPHLIALLAGEAPEGGALDAHAIQPHYTGLLARAA 195

Query: 194 KIRLLPEIIDDHNVVLS 210
             RL      +   + +
Sbjct: 196 GYRLSLGHAGESVEIAA 212


>gi|188580968|ref|YP_001924413.1| hypothetical protein Mpop_1715 [Methylobacterium populi BJ001]
 gi|179344466|gb|ACB79878.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 250

 Score =  198 bits (505), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 5/218 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+      L ++DL ALLCSR+CHD+ISPIGAI N LE+L   D+  + +  ++LIR S+
Sbjct: 5   MSGTTSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDDDPSMREFALELIRKSA 64

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V     A D++ Q++W+  +    + + K
Sbjct: 65  RTASARVQFARIAFGAAGSAGASIDLADAEKVSRAMFA-DEKTQITWSAPQALFPKNKVK 123

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-I 176
           +LLNL ++A +++PRGG + ++V    +     L+  G+ AR P     ++ G  E   +
Sbjct: 124 LLLNLVVIASSAIPRGGVIDVAVTGGGDAPRLVLRAKGSHARIPPHVEALIAGTPEGGSV 183

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D+H I  +Y  L+A    + +   I  D   V +   E
Sbjct: 184 DAHGILPFYAGLVARAAAMDVRFAIEGDEVTVTATPTE 221


>gi|254708257|ref|ZP_05170085.1| hypothetical protein BpinM_15194 [Brucella pinnipedialis
           M163/99/10]
 gi|261315758|ref|ZP_05954955.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261304784|gb|EEY08281.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
          Length = 192

 Score =  198 bits (504), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 57/140 (40%), Positives = 96/140 (68%), Gaps = 1/140 (0%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   LS++DL ALLCSRICHDIISP+GAI+N LELL+E G +++ M LI+ S+ +A  R
Sbjct: 2   SLPVTLSALDLGALLCSRICHDIISPVGAINNGLELLEEGGADEDAMALIKSSARNASAR 61

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F R+AFG  GS    I  GD + V  ++   +++ + +W G ++ L + + K+LLN+ 
Sbjct: 62  LQFARIAFGAAGSAGVQIDTGDAQNVATEYF-RNEKPEFTWEGARVLLPKNKVKLLLNML 120

Query: 124 MVAHASLPRGGKVTISVQDS 143
           ++ + ++PRGG + + ++ +
Sbjct: 121 LIGNGAIPRGGSLAVRLEGA 140


>gi|114569208|ref|YP_755888.1| hypothetical protein Mmar10_0657 [Maricaulis maris MCS10]
 gi|114339670|gb|ABI64950.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 227

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           M  ++   L +  L ALLC+R+CHD++SP+ A+  +L + D+     + ++ M+L+R SS
Sbjct: 5   MQDDLPAELPADQLAALLCARLCHDLVSPVSALGAALSVFDDPDSADMHEDAMELVRESS 64

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
             A  +L+F RLAFG  GS   ++   +++++ E   +   + ++ W  E   L ++ A+
Sbjct: 65  RQAQAKLEFCRLAFGAGGSAPGIMDSRELQRLTEAMFS-SVKPEIVWKVESAGLEKQAAR 123

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTI 176
           +LLN+ ++   + PRGG VTI   ++       +   G  AR      + ++    E+  
Sbjct: 124 LLLNMCLLGVDAAPRGGTVTIEGAETGGGARLRVISEGPRARLEPGTARALEALAPENGY 183

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   IQ YY  L+A  N  R+  +  +++ V   AL++
Sbjct: 184 DGRSIQPYYTGLIARSNGGRVSAQA-NENRVEFIALVK 220


>gi|260433681|ref|ZP_05787652.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417509|gb|EEX10768.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 198

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/202 (28%), Positives = 95/202 (47%), Gaps = 8/202 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLK 65
              ++++L  L+ SRICHD+ISPIGAI N LELL+   G +   M+LI  S  SA  R++
Sbjct: 1   MGDTNVNLAELIGSRICHDLISPIGAITNGLELLEMVGGTQGPEMELITGSVGSAGARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG     D  +G  ++  ++ D +    RV+V W   +  + R + K+     M 
Sbjct: 61  FFRVAFGAA--SDQPLGRSEVTDLLRD-VERAGRVRVHWNVTEA-MPRNQIKLAFLALMC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
             +++P GG+V I     K     +      +   P+ +  +  G   + +    +QF  
Sbjct: 117 CESAMPMGGEVKIDSVGDKWTVTGT---ADRMNVDPDLWKGLPTGTFANKVTPAQVQFAL 173

Query: 186 VILLAHENKIRLLPEIIDDHNV 207
           +   A     R+L E      V
Sbjct: 174 LPQTAAAQGRRVLAETGATRVV 195


>gi|46203314|ref|ZP_00051697.2| hypothetical protein Magn03005939 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 246

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 5/218 (2%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           M+      L ++DL ALLCSR+CHD+ISPIGAI N LE+L++     + +  ++LIR S+
Sbjct: 1   MSGTSSLTLDALDLSALLCSRVCHDVISPIGAIVNGLEVLEDDNDPSMREFALELIRKSA 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +A  R++F R+AFG  GS  + I L D E+V     A D++ Q++W+  +    + + K
Sbjct: 61  RTASARVQFARIAFGAAGSAGASIDLADAEKVSRAMFA-DEKTQIAWSAPQALFPKNKVK 119

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STI 176
           +LLNL ++A  ++PRGG + ++V        F L+  G+ AR P     ++ G  E  T+
Sbjct: 120 LLLNLVVIASGAIPRGGLIDVAVTGGGEAPRFVLRAKGSHARIPPHVEALIAGTPEGGTV 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D+H I  +Y  L++    + +   I  D   V +   E
Sbjct: 180 DAHGILPFYAGLVSRAAAMDVRFTIEGDEVTVTATPTE 217


>gi|163736427|ref|ZP_02143846.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis
           BS107]
 gi|161390297|gb|EDQ14647.1| hypothetical protein RGBS107_14886 [Phaeobacter gallaeciensis
           BS107]
          Length = 198

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 10/204 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
            ++ + +L AL+ SRICHD+ISPIGAI+N LELL   G +    ++LI  S  +A  R++
Sbjct: 1   MSVDNANLAALIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG     D  I   ++  V+ED I    R++  W  ++   SR   ++     + 
Sbjct: 61  FFRIAFGAA--SDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184
               LP GG V I   D K    +++   G+      + + ++  G   +T+    +QF 
Sbjct: 117 LETGLPYGGTVKILCADGK----WTVIGEGSKLNIDDDLWARVSGGTSSTTVTPALVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            +   A +    +  E   +   V
Sbjct: 173 MLPEAAKDLGRTVRVEQTLERVTV 196


>gi|149187048|ref|ZP_01865355.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21]
 gi|148829337|gb|EDL47781.1| hypothetical protein ED21_31344 [Erythrobacter sp. SD-21]
          Length = 219

 Score =  195 bits (496), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 111/210 (52%), Gaps = 5/210 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            S+DL A+LCSR+CHD++SP+GA++N LELL   D+  +   V+ L+  S+ ++  +LKF
Sbjct: 5   KSIDLAAMLCSRLCHDMLSPVGALNNGLELLAMEDDPEMRKNVIALLEQSATTSTNKLKF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  G     + + +   +I+  +A   ++++ W  E  +L++   K+LLN   +A
Sbjct: 65  FRLAFGAAGGFGDRVDVQEPRALIDALVADKDKIEIHWAIEAANLAKPAVKVLLNFAQIA 124

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYY 185
             +L RGG + I  +         ++  G    F +   + +DG++  S + S     + 
Sbjct: 125 IDALVRGGTLDIGAEVRDGNCEIVVRATGTKVAFDDNIGKAIDGSLPHSELSSRTAAAHM 184

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + LLA  +   L      D  +VL A+L +
Sbjct: 185 IHLLAEGSGGGLQYART-DETLVLGAVLPE 213


>gi|170750431|ref|YP_001756691.1| hypothetical protein Mrad2831_4036 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656953|gb|ACB26008.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 236

 Score =  195 bits (495), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/194 (34%), Positives = 106/194 (54%), Gaps = 5/194 (2%)

Query: 19  CSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L++     +    ++LI  S+  A  RLKF R+AFG  G
Sbjct: 21  CSRVCHDVISPVGAIVNGLEVLEDDQDESMRTFALELIGKSARQASARLKFARIAFGAAG 80

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I L D E V +   A D + +++W+  +    + + K+LLNL M+A +++PRGG 
Sbjct: 81  SAGASIDLADAESVAKGMFADD-KTKLTWSAPQALFPKNKVKLLLNLVMIATSAIPRGGV 139

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENK 194
           + + V          LK  G+ AR P    +++ G  E  T+D+H I  +Y  L+A    
Sbjct: 140 IDVVVSGDGEAPTLVLKAKGSHARIPPHVEELMAGRPESGTVDAHGILPFYAGLVARAAA 199

Query: 195 IRLLPEIIDDHNVV 208
           + +   I  D   +
Sbjct: 200 MDVRFAIEGDEVTI 213


>gi|254477150|ref|ZP_05090536.1| conserved hypothetical protein [Ruegeria sp. R11]
 gi|214031393|gb|EEB72228.1| conserved hypothetical protein [Ruegeria sp. R11]
          Length = 198

 Score =  194 bits (493), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 10/204 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
            ++ + +L AL+ SRICHD+ISPIGAI+N LELL   G +    ++LI  S  +A  R++
Sbjct: 1   MSVDNANLAALVGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG     +  I   ++  V+ED I+   R++  WT ++   +R   ++ L   + 
Sbjct: 61  FFRIAFGAA--SEQQISRAEVVSVLED-ISKGGRLKYQWTPQEPA-TRAEVRLALLAGLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184
               LP GG V I   D K    +++   G+      E + ++  G+  +T+    +QF 
Sbjct: 117 LETGLPYGGNVNILCADGK----WTVIGEGSKLNIDDELWARVSGGSSSATVTPALVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            +   A +    +  E   +   +
Sbjct: 173 MLPEAARDLGRTVRVEQTLERVTI 196


>gi|182678005|ref|YP_001832151.1| hypothetical protein Bind_1019 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633888|gb|ACB94662.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 222

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 77/212 (36%), Positives = 127/212 (59%), Gaps = 7/212 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIR 63
           F+L  MDL ALLCSR+CHD+ISP+GAI N LE+L+E       +  + LI+ S+ +A  R
Sbjct: 4   FSLDPMDLAALLCSRVCHDVISPVGAIVNGLEILEEEKEESQRELALDLIKKSAETASAR 63

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  GS  +LI  GD E+V+    A + R  + W   ++ +++++ K++LNL 
Sbjct: 64  LQFCRLAFGAAGSAGALIDTGDAERVMRGLFA-EGRSTLEWHAPRVLMAKDKVKLILNLC 122

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182
           ++A A+LPRGG V+++++  +  +   +   G  AR  +    ++ G  +  ++D+H IQ
Sbjct: 123 LIAMAALPRGGVVSVTIEGGETPSHIKIDAQGTNARLAQHVPSLLAGAPDTGSVDAHGIQ 182

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +Y  L+A    + L  +II + N+V  A   
Sbjct: 183 AFYTGLVAKSAGMTL--DIIAEPNLVQIAATP 212


>gi|300022395|ref|YP_003755006.1| hypothetical protein Hden_0868 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524216|gb|ADJ22685.1| Protein of unknown function DUF2328 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 216

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 7/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           M++      + ++L AL+ SRICHDII+P+GAI N LE+LDE      +   + +IR  +
Sbjct: 1   MSQRAPVPPTDLELAALISSRICHDIINPVGAIFNGLEILDEDDDAQAKSYALNVIRNVT 60

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGEKIDLSRERA 116
             A  RL+F R AFG  GS  ++I L   E++   F+ +   + ++ W G    +++++ 
Sbjct: 61  EQASARLEFARFAFGAAGSAGAMIDLTTAEKISRGFVKITQGKHKLIWRGAPGFVAKDKV 120

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           K+LLNL   +  +LPRGG++ +++  S  +  F ++  G  AR P+  T  V GN    +
Sbjct: 121 KLLLNLIASSVTALPRGGEIDVAIAGSFEQPSFLIRCKGTSARPPQYLTDFVAGNP-LAL 179

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D+  IQ YY   +A    +RL  EI+ D   +L     +
Sbjct: 180 DAMSIQAYYTWRIAPTAGMRL--EILKDGADILLVAKPE 216


>gi|85707642|ref|ZP_01038708.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1]
 gi|85689176|gb|EAQ29179.1| hypothetical protein NAP1_00365 [Erythrobacter sp. NAP1]
          Length = 217

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 108/210 (51%), Gaps = 5/210 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66
           S  DL ALLCSR+CHD++SP+GA+ N LELL +     + +  ++L+  S+  +  +LKF
Sbjct: 3   SQTDLAALLCSRLCHDMLSPVGALSNGLELLADETDAEMRERCIELLEQSAKISTDKLKF 62

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  G     + + + ++VI    A  KRV+V+W      L +   K++LNL  +A
Sbjct: 63  FRLAFGAAGGFGENVPVEEAQEVIGALAADAKRVEVNWALADSTLPKPAVKVMLNLAQIA 122

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-IDSHDIQFYY 185
             +L RGG + I  +  +       +  G    F E   Q + G +  + I S     + 
Sbjct: 123 LDALVRGGTLDIGAEKREGNIEIVARAAGQRIAFDETIGQALQGELADSDISSRTAAAHM 182

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + L+A E    L   + DD  +VL A+L +
Sbjct: 183 IALVAGEMGGGLQYAVSDDA-LVLGAVLPE 211


>gi|86138882|ref|ZP_01057454.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193]
 gi|85824529|gb|EAQ44732.1| hypothetical protein MED193_03902 [Roseobacter sp. MED193]
          Length = 198

 Score =  192 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 10/204 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
             + + +L AL+ SRICHD+ISP+GAI+N LELL   G +    ++LI  S ++A  R++
Sbjct: 1   MAVDTANLAALIGSRICHDLISPVGAINNGLELLAMSGAMAGPELELISDSVLNANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG  G  D  +G  +I  V++D I    R++  W   +   SR   ++     + 
Sbjct: 61  FFRIAFGAAG--DQQMGRAEIVSVLDD-IGKAGRLKYQWNLAEGC-SRSEVRMAFLAALC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFY 184
              +LP GG +++S  D K    +++   G            VD  +  +T+    +QF 
Sbjct: 117 LETALPYGGLISVSCTDGK----WTVVGEGRKISIEAPLWGHVDTSDTSATLTPAQVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            + + A E + ++  +  ++   V
Sbjct: 173 MLAVAAQEAERQVSFDHSEEKVTV 196


>gi|154247415|ref|YP_001418373.1| hypothetical protein Xaut_3487 [Xanthobacter autotrophicus Py2]
 gi|154161500|gb|ABS68716.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 226

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 5/197 (2%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAI 61
           +   +S++DL ALLCSR+CHD+ISP+GAI N LE+L++     + D  + LI  S+  A 
Sbjct: 16  VTLAVSALDLGALLCSRVCHDVISPVGAIVNGLEVLEDEDAADMRDVALDLIAKSARQAS 75

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
            RL+F RLAFG  GS  + + LGD EQV+   I  D R +V W+  +  L + R K+LLN
Sbjct: 76  ARLQFTRLAFGAAGSAGARLDLGDAEQVVRPVIE-DGRTRVEWSLPRELLPKNRVKLLLN 134

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHD 180
           L ++A  ++PRGG + IS     +   F L   G  AR PE    +VDG   E  +D+H 
Sbjct: 135 LVLLAGTTIPRGGVIRISAVGEGDATGFVLASTGEKARIPEGLQALVDGVAPEGGLDAHS 194

Query: 181 IQFYYVILLAHENKIRL 197
           +Q +Y  +LA +  I +
Sbjct: 195 VQPFYAGMLARDCAIAI 211


>gi|87201062|ref|YP_498319.1| hypothetical protein Saro_3050 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136743|gb|ABD27485.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 213

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 60/212 (28%), Positives = 103/212 (48%), Gaps = 5/212 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
             +S++DL +LLCSR+CHD++SP+GA+ N LELL +     +     +L+  S+ ++  +
Sbjct: 1   MTVSALDLASLLCSRLCHDMLSPVGALSNGLELLADEKDPEMRQRCFELLEQSAKASADK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G     + + +   +++  +  + RV V+W      L +   K LLNL 
Sbjct: 61  LKFFRLAFGAAGGFGEQVPVNEARPLVDALVGANGRVAVNWMFGVDSLPKPAVKTLLNLA 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQ 182
           ++   +L RGG + +  +         ++  G    F     Q ++G +  S + S    
Sbjct: 121 LIGLDALVRGGTLDVGAEVRDGVTEIVVRAAGQRIAFDPAIGQALEGALPTSELSSRTAP 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  LA      +   I  D ++VL A+L 
Sbjct: 181 AAMVHQLAAAVGGGVQVHIAPD-SLVLGAVLP 211


>gi|254464507|ref|ZP_05077918.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
 gi|206685415|gb|EDZ45897.1| conserved hypothetical protein [Rhodobacterales bacterium Y4I]
          Length = 198

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 10/196 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
             + + +L AL+ SRICHD+ISP+GAI+N LELL   G +    ++LI  S  +A  R++
Sbjct: 1   MGVDNANLAALVGSRICHDLISPVGAINNGLELLGMAGSMSGPELELISDSVANANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG  G  D  +   +I  ++ED I+   R++  W+  +   +R  A++ L   + 
Sbjct: 61  FFRVAFGAAG--DQQMARAEIVSLLED-ISKGGRIKYQWSPLEGC-TRSEARLSLLAALC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFY 184
              +LP GG V +   D K    +++   G+      E + ++  G   + I    +QF 
Sbjct: 117 LETALPYGGTVKVFCADGK----WTVMGEGSKLNVDDELWARVSGGTSNAEITPALVQFA 172

Query: 185 YVILLAHENKIRLLPE 200
            +   A E    +  E
Sbjct: 173 LLPEAAKEANRTVRLE 188


>gi|254512237|ref|ZP_05124304.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
 gi|221535948|gb|EEE38936.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
          Length = 204

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 8/204 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMS 59
           M + +    S ++L  L+ SRICHD+ISPIGAI N LELL+ VG  +   M+LI  S  S
Sbjct: 1   MQQEVRMGASDVNLAELIGSRICHDLISPIGAITNGLELLEMVGAVKGPEMELISGSVGS 60

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           A  R++F R+AFG     D  +G  ++ ++++D +    RV++ WT  +  + R + K+ 
Sbjct: 61  AGARIRFFRVAFGAA--SDQPLGRAEVVELLKD-VERAGRVRIVWTLTEP-VPRNQVKLA 116

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
               M   +++P GG+V I+V+           +   L+     +  + +G     +   
Sbjct: 117 FLALMCCESAMPFGGEVEITVRSDAWTVTG---MADKLSLDSGLWKGVANGCFAEKVSPA 173

Query: 180 DIQFYYVILLAHENKIRLLPEIID 203
            +QF  +   A     R+  E   
Sbjct: 174 QVQFALLPEAAAPMGRRVAVETTA 197


>gi|294011925|ref|YP_003545385.1| hypothetical protein SJA_C1-19390 [Sphingobium japonicum UT26S]
 gi|292675255|dbj|BAI96773.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
          Length = 217

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64
            + S+D  +LLCSR+CHD++SP+GA++N LEL+ +     +    + L+  S+ ++  +L
Sbjct: 4   PIDSIDFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSARTSANKL 63

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           KF RLAFG  G     +   +    IE   A   RV++ W  E   L +   K+LLNL +
Sbjct: 64  KFFRLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLEKLPVKVLLNLAL 123

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQF 183
           +A  +L RGG++ I  +         ++  G            + G      + S     
Sbjct: 124 IAGDALVRGGQLDIGAEKRPGVTEIVVRAEGPKLVLDPDLRAALAGTLPPEGLASRTSAA 183

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + V  L       +      +  ++  A + +
Sbjct: 184 WMVRTLVTSVGGEIALSPAGEPILLFGASIPE 215


>gi|56551648|ref|YP_162487.1| hypothetical protein ZMO0752 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761225|ref|ZP_04759313.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260752764|ref|YP_003225657.1| hypothetical protein Za10_0524 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56543222|gb|AAV89376.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241374132|gb|EER63629.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258552127|gb|ACV75073.1| conserved hypothetical protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 208

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 102/211 (48%), Gaps = 8/211 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
             +++++L +LLCSR+CHD++SP+ A++N +ELL +     +    + L+  S+  +  +
Sbjct: 1   MTMTAINLASLLCSRLCHDLLSPVSAMNNGIELLADEHDPEMRARCIDLLSESAKVSASK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G     +   +I + I      D R+Q+ W  +   + ++  +ILLNL 
Sbjct: 61  LKFFRLAFGQGGGFSESVDTEEIREAIAGLFGFDHRIQLGWMVDDPVMEKQAVRILLNLS 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGNVESTIDSHDIQ 182
           ++A  +L RGG + I  + ++      ++  G    F E+    ++    +  +    + 
Sbjct: 121 LIASDALVRGGNLDIGAEGNE----IVIRAEGRRLVFDEQIEATLLGKTPQDQLTPRLVA 176

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            + +  L  E    L     + + ++    L
Sbjct: 177 AWLIYTLIKERNGDLQIVRPEPNVLLFGINL 207


>gi|94497524|ref|ZP_01304093.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58]
 gi|94422941|gb|EAT07973.1| hypothetical protein SKA58_08414 [Sphingomonas sp. SKA58]
          Length = 221

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 1   MAKNICFN--LSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           MA  I       S++  +LLCSR+CHD++SP+GA++N LEL+ +     + +  + L+  
Sbjct: 1   MAIRIRMTNPTDSIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPAMRERCLDLLGD 60

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S+ ++  +LKF RLAFG  G     +   + +  IE   A   RV+V W  ++  L +  
Sbjct: 61  SARTSANKLKFFRLAFGSAGGFGEAVPPHEAKVAIEGMFAGAGRVKVGWMVDEQMLGKLA 120

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-S 174
           AKILLNL ++A  +L RGG++ I  +         ++  G            + G +   
Sbjct: 121 AKILLNLALIAGDALVRGGQLDIGAETRPGVTEIVVRAEGPKLVLDPDLRAALAGTLPIE 180

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + S     + V  L  E   +++     +  ++  A++ 
Sbjct: 181 GLASRTAAAWMVRQLVMEAGGQIVLSPAGEPTLLFGAVIP 220


>gi|323137584|ref|ZP_08072661.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242]
 gi|322397210|gb|EFX99734.1| Protein of unknown function DUF2328 [Methylocystis sp. ATCC 49242]
          Length = 231

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 105/185 (56%), Gaps = 5/185 (2%)

Query: 21  RICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           R+CHD+ISP+GAI N LE+L+   +  +    + LI+ S+  A  RL+F RLAFG  GS 
Sbjct: 18  RVCHDVISPVGAIVNGLEVLEEEKDAEMRGHALALIKSSANEASARLQFCRLAFGAAGSK 77

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
            + I  GD E V    +A D+R Q++W+  ++ +S+ + K+LLNL ++A A++PRGG ++
Sbjct: 78  GASIDTGDAELVTRQLLA-DERTQLNWSVPRVLMSKNKVKLLLNLCLLADAAIPRGGVIS 136

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIR 196
           +S     +   F ++  G  AR       ++ G  E   ID+  IQ YY  L+A    + 
Sbjct: 137 VSSTGEDDRIAFRIEAKGTNARVAANIPALLAGEAEEGAIDARAIQPYYAGLVAKACGLD 196

Query: 197 LLPEI 201
           +   +
Sbjct: 197 VTVNV 201


>gi|85373065|ref|YP_457127.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594]
 gi|84786148|gb|ABC62330.1| hypothetical protein ELI_01190 [Erythrobacter litoralis HTCC2594]
          Length = 214

 Score =  188 bits (479), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/210 (26%), Positives = 108/210 (51%), Gaps = 5/210 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++ L + LCSR+CHD++SP+GA+ N LELL   ++  +    ++L+  S+ ++  +LKF
Sbjct: 5   DAVTLASQLCSRLCHDLLSPVGALSNGLELLAEEEDPEMRQRCLELLEASARTSANKLKF 64

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            RLAFG  G     +G+ + + VI+      KRV+V+W      L +   K++LN   + 
Sbjct: 65  FRLAFGAAGGFGDRVGVDEPKAVIDALAQDAKRVEVNWALAVDALPKPAVKVMLNFAQMG 124

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYY 185
             +L RGG + I  +     +   ++  G    F +   + ++G++    +       + 
Sbjct: 125 LDALVRGGTLDIGAERRDGASEIVVRATGAKVAFDDSIGRALEGSLPEDGLSGRTAAAHM 184

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + L+A ++   L  +  +D  +VL A+L +
Sbjct: 185 LALIAEQSGGNLQYQKSEDA-LVLGAMLPE 213


>gi|114705528|ref|ZP_01438431.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506]
 gi|114538374|gb|EAU41495.1| hypothetical protein FP2506_13719 [Fulvimarina pelagi HTCC2506]
          Length = 230

 Score =  188 bits (477), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 59/191 (30%), Positives = 109/191 (57%), Gaps = 4/191 (2%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S+ICHDIISP+  + + LELLD++  + E M L+R S  +A+ +L+F R+A+G +GS  +
Sbjct: 40  SKICHDIISPVFGVQSGLELLDDMPDDAESMGLVRNSCKAAVGKLQFARMAYGASGSQTA 99

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
            I L D +   E ++A + +  + WTGE     +  AK +LNL ++A +S+ RGG+VT++
Sbjct: 100 AIDLNDAKTTAEGYMAHE-KPDLVWTGEPGYAPKNFAKAVLNLIVLATSSISRGGEVTVA 158

Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLL 198
           ++ + +    ++       R       +++G      I++  IQ YY++  A+E  + + 
Sbjct: 159 IE-ATDPGRATVTAKAQRIRIQPDTIALIEGTYNGEAINAQTIQPYYMLFCANEAGLSVS 217

Query: 199 PEIIDDHNVVL 209
             +I++  V  
Sbjct: 218 -HVIEEGRVTF 227


>gi|217978669|ref|YP_002362816.1| hypothetical protein Msil_2530 [Methylocella silvestris BL2]
 gi|217504045|gb|ACK51454.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 227

 Score =  188 bits (477), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 11/196 (5%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           CSR+CHD+ISP+GAI N LE+L++     +  E +QLIR S+ +A  RL+F RLAFG  G
Sbjct: 16  CSRVCHDVISPVGAIVNGLEILEDEKDADMRAEALQLIRASAENASARLQFCRLAFGAAG 75

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           S  + I  GD E+V     + D ++++ W   ++ L + + K++LNL ++A A++PRGG 
Sbjct: 76  SAGASIDTGDAEKVARGLFS-DAKIKLDWRAPRVLLPKNKVKLILNLCLIASAAIPRGGV 134

Query: 136 VTISVQDSKNENI-------FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           +T+    +  +           +   G  A+       I+ G     ID+H IQ YY  L
Sbjct: 135 ITVETITADAKEGALEPTIALRVIAQGTNAKLAPLTAAILAGAPAEAIDAHAIQPYYAAL 194

Query: 189 LAHENKIRLLPEIIDD 204
           +A    + L  E   D
Sbjct: 195 VAQAAGMSLKAETGAD 210


>gi|332185707|ref|ZP_08387454.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17]
 gi|332014065|gb|EGI56123.1| hypothetical protein SUS17_1013 [Sphingomonas sp. S17]
          Length = 214

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 4/211 (1%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
             +S +D  +LLCSR+CHD++SP+GA++N LELL +     +    M+L+  S+ ++  +
Sbjct: 1   MTVSPVDFASLLCSRLCHDLLSPVGALNNGLELLADETDPAMRARCMELLADSARASANK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G     + + + +  +E  +  ++R  + W  E   L +   +IL+NL 
Sbjct: 61  LKFFRLAFGAGGGFSDRVDMAEAKAAVEGLLVDNRRTTLGWLVEAPSLPKPAVRILVNLA 120

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVESTIDSHDIQ 182
           ++A  +L RGG + I  +  +     ++++ G       +  + +++G     + S    
Sbjct: 121 LIAVEALARGGTIDIGAEAGREAIEIAIRLEGPRILLDPEIRRTLMEGQGTEPLGSRTAP 180

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            + +  L  E+    L      + ++L A +
Sbjct: 181 AFLIHTLTVEHGGMTLVTEPAPNTMILGAAI 211


>gi|307293089|ref|ZP_07572935.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum
           L-1]
 gi|306881155|gb|EFN12371.1| Protein of unknown function DUF2328 [Sphingobium chlorophenolicum
           L-1]
          Length = 217

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64
           +  S++  +LLCSR+CHD++SP+GA++N LEL+ +     +    + L+  S+ ++  +L
Sbjct: 4   STDSIEFASLLCSRLCHDLLSPVGALNNGLELMADETDPEMRQRCLDLLADSAKTSANKL 63

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           KF RLAFG  G     +   +    IE   A   RV++ W  E   L +   K+LLNL +
Sbjct: 64  KFFRLAFGSAGGFGDAVPTHEARVAIEGMFAASGRVKIGWLVEDDMLDKLPVKVLLNLAL 123

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQF 183
           +A  +L RGG++ I  +         ++  G            + G +    + S     
Sbjct: 124 IAGDALVRGGQLDIGAEKRPGVTEIVVRAEGPKLVLDPDLRAALAGTLPSEGLASRTSAA 183

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + V  L       +      +  ++  A +  
Sbjct: 184 WMVRTLVTSTGGEIALSPAGEPVLLFGASIPD 215


>gi|99081047|ref|YP_613201.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040]
 gi|99037327|gb|ABF63939.1| hypothetical protein TM1040_1206 [Ruegeria sp. TM1040]
          Length = 198

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 10/204 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65
            ++ + +L AL+ SRICHD+ISP+GAI+N LELL      E   ++LI  S  +A  R++
Sbjct: 1   MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG  G  +  +G  +I  V+ D ++   R++ +W+ +     R+  ++     + 
Sbjct: 61  FFRVAFGAAG--EQELGRMEIMSVLSD-VSKGGRIKYNWSSQDSAARRD-VRMAFLAGLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQFY 184
             ++LP GG V I     ++ + +++   G      E  ++ +V     + I    +QF 
Sbjct: 117 LESALPYGGTVQIL----RSTDGWTVTGEGRKINLDETLWSGLVADTTPAEITPALVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            +   A E    L      +   +
Sbjct: 173 LLPAAAKEAGYTLAFNQTAEKISI 196


>gi|84516141|ref|ZP_01003501.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53]
 gi|84509837|gb|EAQ06294.1| hypothetical protein SKA53_04383 [Loktanella vestfoldensis SKA53]
          Length = 196

 Score =  185 bits (471), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/201 (30%), Positives = 92/201 (45%), Gaps = 13/201 (6%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            DL  L+ SRICHD+ISPIGAI N LELL    G     M LI  S  +A  R++F R+A
Sbjct: 3   PDLATLVGSRICHDLISPIGAIGNGLELLALTDGNPGAEMNLIADSVQNANARIRFYRIA 62

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           +G   S + ++G  D+   I   +A   R    W   + D  R   +  L L     A++
Sbjct: 63  YGAA-STEQMLGSADVLSFIS-VLARGGRFTYFWQVAE-DRPRREVRCALLLLQCFEAAM 119

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVI 187
           P GG + +SV D          ++    RF   P  + ++  G+   T  +  +QF  + 
Sbjct: 120 PVGGDIHVSVIDG------RWVLSAECLRFNIDPCLWDRLATGDTAFTYSAAQVQFALLP 173

Query: 188 LLAHENKIRLLPEIIDDHNVV 208
            +  E    L  ++  D  VV
Sbjct: 174 CMLQEAGRALKVKMSSDRIVV 194


>gi|259418910|ref|ZP_05742827.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345132|gb|EEW56986.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 198

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65
            ++ + +L AL+ SRICHD+ISP+GAI+N LELL      E   ++LI  S  +A  R++
Sbjct: 1   MSVDNANLAALVGSRICHDLISPVGAINNGLELLGMSNSLEGPELELISDSVNNANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG  G  +  +G  +I  V+ D ++   R++ +W+ ++    R+  ++     + 
Sbjct: 61  FFRVAFGSAG--EQELGRMEIMSVLGD-VSKGGRIKYNWSSQEAAARRD-VRMAFLAGLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQFY 184
             ++LP GG + I     ++ + +++   G      E  ++ +     +  I    +QF 
Sbjct: 117 LESALPYGGTIQIL----RSTDGWTVTGEGRKINVDEDLWSGLASDAPKVEITPALVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            +   A E   +L      +   +
Sbjct: 173 LLPEAAKEAGRQLSFSQSAEKISI 196


>gi|254292520|ref|YP_003058543.1| hypothetical protein Hbal_0144 [Hirschia baltica ATCC 49814]
 gi|254041051|gb|ACT57846.1| conserved hypothetical protein [Hirschia baltica ATCC 49814]
          Length = 206

 Score =  185 bits (470), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 98/208 (47%), Gaps = 3/208 (1%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           + +  L ALL S ICH+++SP+ +     + L++  + + V  LIR SS +   +L F+R
Sbjct: 1   MEASKLAALLASHICHELVSPVSSFKLVQDSLNDPDMREYVEDLIRSSSETLEYKLTFLR 60

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
            A G  G  D    L +   + ++++    R  + W       +  + ++++N+ M+A +
Sbjct: 61  YALGSVGMQDGYADLHEARSLCQNYMK-GFRADLEWNDTPEITNFAQVRLVMNMMMIATS 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYVI 187
           ++PRGG ++++ +   ++ I  ++  G      E+    ++G   E    + +IQ Y+  
Sbjct: 120 AMPRGGMISVTSEKVGDKVILKVEGKGPRVVLNEERRDSLNGVEPEGGWIAKNIQPYFAR 179

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
             A E    ++     +  + L     +
Sbjct: 180 ECAREIG-AIIELATAEEEISLKCSTPE 206


>gi|163731846|ref|ZP_02139293.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149]
 gi|161395300|gb|EDQ19622.1| hypothetical protein RLO149_21119 [Roseobacter litoralis Och 149]
          Length = 198

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 10/201 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLK 65
              S+++L AL+ SRICHD+ISPIGAI+N LELLD   G     M LI+ S  +A  R++
Sbjct: 1   MGQSNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           + R+AFG  G  + ++G  +I  +I+D +    R+ V+W G      R   ++     + 
Sbjct: 61  YFRVAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRLAFLALLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFY 184
              ++P GG++ I    S+++  + L  + +     +    I+   +    +    +QF 
Sbjct: 117 VETAMPYGGRIEI----SQDDGQWLLHGHADKLNIDQTLWDILATKDAPDDLRPAQVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDH 205
            + L+A +   R + EI    
Sbjct: 173 LLPLIAGDLNRRTVTEIGKSE 193


>gi|163741038|ref|ZP_02148430.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10]
 gi|161385391|gb|EDQ09768.1| hypothetical protein RG210_16300 [Phaeobacter gallaeciensis 2.10]
          Length = 188

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 10/194 (5%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++ SRICHD+ISPIGAI+N LELL   G +    ++LI  S  +A  R++F R+AFG   
Sbjct: 1   MIGSRICHDLISPIGAINNGLELLGMSGDMSGPELELISDSVANANARIRFFRIAFGAA- 59

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
             D  I   ++  V+ED I    R++  W  ++   SR   ++     +     LP GG 
Sbjct: 60  -SDQQISRAEVVSVLED-IGKGGRLKYQWAPQEAS-SRTEVRLAFLAALCLETGLPYGGT 116

Query: 136 VTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194
           V I   D K    +++   G+      + + ++  G   +T+    +QF  +   A +  
Sbjct: 117 VKILCADGK----WTVIGEGSKLNIDDDLWARVSGGTSSATVTPALVQFAMLPEAAKDLG 172

Query: 195 IRLLPEIIDDHNVV 208
             +  E   +   V
Sbjct: 173 RTVRVEQTLERVTV 186


>gi|56696855|ref|YP_167218.1| hypothetical protein SPO1983 [Ruegeria pomeroyi DSS-3]
 gi|56678592|gb|AAV95258.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 198

 Score =  184 bits (468), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 56/203 (27%), Positives = 96/203 (47%), Gaps = 8/203 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65
              S ++L +L+ SRICHD+ISPIGAI N LELLD  G  E   M+LI  S  +A  R++
Sbjct: 1   MAQSGVNLASLIGSRICHDLISPIGAITNGLELLDMTGSVEGPEMELIADSVGNAGARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+A+G   S D ++G  ++  +++D +    R +  W   +  ++R   ++       
Sbjct: 61  FFRIAYGA--SSDQMLGRAELVGLLDD-LNRSARAKADWAPTEP-VTRAEVRMAFLALQC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
              +LP GG V +   D + +          L+  P  +  + +      +    +QF  
Sbjct: 117 CETALPFGGSVRM---DQQGDRWIVTAEAEKLSVDPALWEGLSNPAALKQVTPAQVQFAL 173

Query: 186 VILLAHENKIRLLPEIIDDHNVV 208
           +  +A +   R+  E  D   V+
Sbjct: 174 LPAVAEDAGRRVTVETSDRQLVI 196


>gi|110679883|ref|YP_682890.1| hypothetical protein RD1_2657 [Roseobacter denitrificans OCh 114]
 gi|109455999|gb|ABG32204.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 198

 Score =  184 bits (467), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 10/201 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK 65
              S+++L AL+ SRICHD+ISPIGAI+N LELLD   G     M LI+ S  +A  R++
Sbjct: 1   MGQSNINLGALIGSRICHDLISPIGAINNGLELLDMSGGAPGPEMDLIQESVGNASARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           + R+AFG  G  + ++G  +I  +I+D +    R+ V+W G      R   ++     + 
Sbjct: 61  YFRVAFGAAG--EQMMGRAEIVSIIKDVMQ-GSRLNVAW-GPMDAQPRSHVRMAFLALLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQFY 184
              ++P GG++ IS    +    + L  + +     E    I+        +    +QF 
Sbjct: 117 VETAMPYGGRIEISQDGGQ----WLLHGHADKLNIDEALWDILATKEAPDDLRPAQVQFA 172

Query: 185 YVILLAHENKIRLLPEIIDDH 205
            + L+A +   + + EI    
Sbjct: 173 LLPLIAGDMNRQTVTEIGKSE 193


>gi|148552992|ref|YP_001260574.1| hypothetical protein Swit_0063 [Sphingomonas wittichii RW1]
 gi|148498182|gb|ABQ66436.1| Uncharacterized protein [Sphingomonas wittichii RW1]
          Length = 208

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 9/208 (4%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM 67
           S D  +LLCSR+CHD++SP+GA++N +ELL +     + +  M+L+  S+ +   RLKF 
Sbjct: 5   SADFASLLCSRLCHDLLSPVGALNNGIELLADETDPEMRERCMELLAESAQTTANRLKFY 64

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           RLAFG  G     +   +  + IE  +  + +V++ W  +   L +   K LLNL ++A 
Sbjct: 65  RLAFGAAGGFGERVDTREAREAIEG-LHGNGKVRLGWMVDAPTLPKPAIKTLLNLALIAG 123

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYV 186
            +L RGG++ I+ +  +      ++  G      PE    ++       +       + V
Sbjct: 124 DALVRGGQLDIAAEGGE----VVIRAEGPRVVLDPELRNALLGHADPDLVSPRAAAAWLV 179

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +L  E    +     +D  +++ A L 
Sbjct: 180 HILVSEQGGAVQVSQPEDGLLMIGATLP 207


>gi|260574020|ref|ZP_05842025.1| conserved hypothetical protein [Rhodobacter sp. SW2]
 gi|259023486|gb|EEW26777.1| conserved hypothetical protein [Rhodobacter sp. SW2]
          Length = 197

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 13/201 (6%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFM 67
           +++ DL+ALL SRICHD+ISPIGAI N +ELL   G      + LI  S  +A  R++F 
Sbjct: 1   MANPDLIALLGSRICHDLISPIGAIGNGVELLMMDGSLRGPEIALISESVANANARIRFF 60

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+AFG +G  D  IG  ++  ++ D I    R+ + W     DL R   K++  L     
Sbjct: 61  RVAFGASG-RDQRIGRPEVMAILTD-ITRGGRLSIDWQSA-GDLPRAEVKLVFLLIQCLE 117

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFY 184
            ++  GG++T+             ++ G+ A+    PE +  + D +    +++  + F 
Sbjct: 118 TAMAYGGRITVEQTGDG------WRLTGSAAKLKVSPELWDILTDPDATVEVNAAQVHFA 171

Query: 185 YVILLAHENKIRLLPEIIDDH 205
            V L   +    L  E+ +  
Sbjct: 172 LVPLELAQQGRNLTVEMAESE 192


>gi|260426410|ref|ZP_05780389.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260420902|gb|EEX14153.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 201

 Score =  182 bits (463), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 99/204 (48%), Gaps = 8/204 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLK 65
            ++++  +  L+ SR+CHD++SPIGAI N LEL+   G    E M LI  S+  A  R+ 
Sbjct: 1   MSVATARIATLVGSRLCHDLVSPIGAISNGLELIALAGTPGPEEMALIEQSAALATARIN 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG+  S    +G  +  ++++D+     R+ + W     D +R   ++     + 
Sbjct: 61  FFRVAFGHA-STQQDVGAREARKLLQDYCK-GSRLSIDW-LPDGDAARTEVQLAFLATLC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184
             ++LP GG+V I+  +      + +   G      P+ + Q+    +E+ +    +QF 
Sbjct: 118 CESALPLGGRVHITHIEGGG---WRISGTGQRLSIEPDLWAQLTSTTLEAEVTPARVQFA 174

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            + LLA E   +++    D    +
Sbjct: 175 LLALLAPERGRKMVVHAGDAAVTI 198


>gi|221368988|ref|YP_002520084.1| hypothetical protein RSKD131_3151 [Rhodobacter sphaeroides KD131]
 gi|221162040|gb|ACM03011.1| Hypothetical Protein RSKD131_3151 [Rhodobacter sphaeroides KD131]
          Length = 276

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 10/207 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           ++ +        DL ALL SRICHD+ISPIGAI N +E LL +  I    M LI  S   
Sbjct: 73  LSWSPPMT-EKTDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTH 131

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           A  R++F R+AFG T  +D  IG  +I  ++ D +    R+Q+ W G   DL R   K+ 
Sbjct: 132 ANARIRFFRVAFGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLA 188

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDS 178
             L +    ++  GG++ +     +N+  + L    N  +  P+ +  + +   +  + +
Sbjct: 189 FLLVLCLETAMAYGGRIRV----ERNDARWLLVGQANKMKIEPDLWEMLSNPMAQVEMSA 244

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDH 205
             +QF  V         RL  EI +  
Sbjct: 245 ARVQFALVPDEMSRQGRRLTSEIRESE 271


>gi|302382297|ref|YP_003818120.1| hypothetical protein Bresu_1185 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192925|gb|ADL00497.1| Protein of unknown function DUF2328 [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 222

 Score =  181 bits (460), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 7/213 (3%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAII 62
              +   +L +L+ +++CHD ISP GAI + L+LL++     + D+ + LI  S+   + 
Sbjct: 12  SLPMDGPELASLIAAKLCHDFISPSGAIVSGLDLLNDPTAQDMRDDAISLITDSAKKMVA 71

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
            ++F R+AFG   + +     G+  + + D +    R  + W  E  D S+ +A+ ++NL
Sbjct: 72  LVQFCRVAFGAATTAERF--TGEELRALVDGVTHGGRATLDWRLEVADFSKPQARAMVNL 129

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDI 181
             +  A+LP GG+  ++ +      +      G  AR  PE  T +    +   +    +
Sbjct: 130 AYLTVAALPMGGQAVVTARTQGAGIVLEGLAEGARARLKPEAATGLAGQRLTEGLAGQWV 189

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Q Y++ L   +    L  E + +  VVL+  + 
Sbjct: 190 QPYWLWLTIRQAHGTLNVEAV-EGRVVLTGTIP 221


>gi|197103762|ref|YP_002129139.1| hypothetical protein PHZ_c0296 [Phenylobacterium zucineum HLK1]
 gi|196477182|gb|ACG76710.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 219

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 7/213 (3%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAII 62
              +   +L A L +R+CHD ISP  AI + L+LL++     + +E M LI  S+     
Sbjct: 9   PAAVRPAELAAFLAARMCHDFISPASAIVSGLDLLEDPSAQDMREEAMGLIESSARKLAD 68

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
            L F R+AFG + S ++     D+E++     A   R ++ WT E   +++  A+ LLNL
Sbjct: 69  LLAFCRVAFGASASAETF-DPRDLEKLARGVFA-HMRAELDWTLETPAVNKPTARTLLNL 126

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDI 181
             +A A+LP GG   +       +   +++  G  AR  PE    +    +   +  H +
Sbjct: 127 AQMAGAALPTGGTARVRAVQEGAQVALAVEATGPRARLRPEVLRGLQGEPLGEGLHGHWV 186

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Q YYV L   +   R+  ++ ++  +V +A L 
Sbjct: 187 QAYYVHLFVADAGGRVFADV-NEERIVFAATLP 218


>gi|146279809|ref|YP_001169967.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558050|gb|ABP72662.1| hypothetical protein Rsph17025_3805 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 198

 Score =  177 bits (450), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 9/196 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLA 70
            DL ALL SRICHD+ISPIGAI N +ELL   G      M LI  S  +A  R++F R+A
Sbjct: 5   TDLAALLGSRICHDLISPIGAIGNGVELLMMDGSIRGPEMTLISESVANANARIRFFRVA 64

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           FG TG  +  IG  +I  +++D +    R+Q+ W G   DL R   K+   L +    ++
Sbjct: 65  FGATG-AEQRIGRPEILSILQD-LTRGGRLQIDWQGP-TDLQRREVKLAFLLILCLETAM 121

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVILL 189
             GG++ +     +N+  + L    +  R      +++   +    + +  + F  V   
Sbjct: 122 AYGGRIRV----ERNDARWVLVGQAHKIRIDADLWEMLSNPMAQVEMSAARVHFALVPDE 177

Query: 190 AHENKIRLLPEIIDDH 205
                 RL  EI +  
Sbjct: 178 MSRQGRRLTSEIRETE 193


>gi|163746346|ref|ZP_02153704.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45]
 gi|161380231|gb|EDQ04642.1| hypothetical protein OIHEL45_13115 [Oceanibulbus indolifex HEL-45]
          Length = 200

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 98/201 (48%), Gaps = 12/201 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIR 63
               ++DL AL+ SRICHD+ISPIGAI+N LELL+  G        ++LI  S  SA  R
Sbjct: 1   MGPINLDLPALIGSRICHDLISPIGAINNGLELLNMAGTGAAPGPELELIGQSVESASAR 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           ++F R+AFG +G  D  +G G++  ++ D    D R+++ W       SR+  ++     
Sbjct: 61  IRFFRIAFGASG--DQAMGQGEVTSILRDLYT-DTRIEIDWQITAPQ-SRDCVRMAFLSL 116

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNL-ARFPEKFTQIVDGNVESTIDSHDIQ 182
           M    +L  GG +TI+    +    + L+   +  A  PE +  +   + +  +    +Q
Sbjct: 117 MCMETALHHGGLITIA----EQAGKWRLQAEADKIAVEPELWALLSKVDQDLQLQPAQVQ 172

Query: 183 FYYVILLAHENKIRLLPEIID 203
           F  + +LA      +     +
Sbjct: 173 FALLPILARAQGKEISLTNTE 193


>gi|114797307|ref|YP_759367.1| hypothetical protein HNE_0638 [Hyphomonas neptunium ATCC 15444]
 gi|114737481|gb|ABI75606.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 215

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 5/210 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSMSAIIR 63
            NL      A + +R+CHDI+SP   +  SLE+LD  G  +E  Q    +R  +      
Sbjct: 1   MNLDHARFAAFISARLCHDIVSPAATMSLSLEMLDSPGSAEEKEQSERTLREGAHGVTAT 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F+R AFG  G       +   +++ +D++    +  + W      L+   A++++NL 
Sbjct: 61  LQFLRYAFGSMGLQPGTADVHQFKKLTDDYLRFQ-KPSIDWDLSTPVLTFAEARLIMNLV 119

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182
           MV   +  RGG + ++V++       +L   G+  +  E   + + G          +IQ
Sbjct: 120 MVCLTATVRGGIIHVNVREDNGAKTLTLTCKGDRLKLKEDVVKALKGEEPEHGWRPENIQ 179

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +  L        L      D  VV  A 
Sbjct: 180 PMFAKLTCDSLGGTLHARQAPDGTVVFMAT 209


>gi|126729826|ref|ZP_01745639.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37]
 gi|126709945|gb|EBA08998.1| hypothetical protein SSE37_05110 [Sagittula stellata E-37]
          Length = 201

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 10/197 (5%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFMR 68
           S  L AL+ SR+CHD+ISPIGAI N LEL+   G +     M LI+ S  SA  R++F R
Sbjct: 5   SATLAALVGSRLCHDLISPIGAIQNGLELIALSGADQSSPEMALIQESCDSAAARIRFFR 64

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG  G    ++   ++  ++   +    R++  W     D SR   ++    F    +
Sbjct: 65  VAFGAPGET-QMMSRREVSAILSG-VTKGGRLKAEW-VAGEDQSRPEVQLCFLAFQCCES 121

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVI 187
           +LP GG V I      +   ++++ +G        +   ++G     T  +  + F  + 
Sbjct: 122 ALPMGGTVRI----ENDAAGWTVRASGTRINGDRVYWDHINGAAPLETPPADKVHFALLP 177

Query: 188 LLAHENKIRLLPEIIDD 204
           +LA     +LL  +  D
Sbjct: 178 ILAAARGRQLLATLTGD 194


>gi|332560608|ref|ZP_08414926.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N]
 gi|332274406|gb|EGJ19722.1| histidine phosphotransferase ChpT [Rhodobacter sphaeroides WS8N]
          Length = 198

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            DL ALL SRICHD+ISPIGAI N +E LL +  I    M LI  S   A  R++F R+A
Sbjct: 5   TDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVA 64

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           FG T  +D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++
Sbjct: 65  FGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLAFLLVLCLETAM 121

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             GG++ +   D++    + L    N  +  P+ +  + +   +  I +  +QF  V   
Sbjct: 122 AYGGRIRVERSDAR----WLLVGQANKMKIEPDLWEMLSNPMAQVEISAARVQFALVPDE 177

Query: 190 AHENKIRLLPEIIDDH 205
                 RL  EI +  
Sbjct: 178 MSRQGRRLTSEIRESE 193


>gi|296284605|ref|ZP_06862603.1| hypothetical protein CbatJ_13301 [Citromicrobium bathyomarinum
           JL354]
          Length = 226

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 104/211 (49%), Gaps = 5/211 (2%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64
               + L + LCSR+CHD++SP+GA+ N LELL +     +     +L+  S+ ++  +L
Sbjct: 6   ETDPLLLASQLCSRLCHDMLSPVGALTNGLELLADEKDPQMRQRCFELLEQSARTSAAKL 65

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           KF RLAFG  G     + + + + VIE   A  KRV+++W  E   +S+  AK++LNL  
Sbjct: 66  KFFRLAFGAAGGFGEQVSIDEPKAVIETLAADAKRVELNWAIEAASVSKSAAKVMLNLAN 125

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQF 183
           +   +L RGG + + ++   +     ++  G    F     + + G +  + +       
Sbjct: 126 IGLDALVRGGTLDVGIEVRDDATEIVVRAAGAKIAFDPVIGEALGGRMDPAELTGRTAPA 185

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + + +LA +    L+    +   +++ A L 
Sbjct: 186 HLLAMLADKEGG-LIQTHAEVGTLLMGATLP 215


>gi|329891303|ref|ZP_08269646.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568]
 gi|328846604|gb|EGF96168.1| hypothetical protein BDIM_30160 [Brevundimonas diminuta ATCC 11568]
          Length = 252

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 7/212 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIR 63
             +   +L A + +++CHD ISP GA+ + L+LLD+     + D+ + LIR S+   +  
Sbjct: 30  LPVDGAELAAFIAAKLCHDFISPAGAVMSGLDLLDDPTAQDMRDDALGLIRQSAAKMVAL 89

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           + F R+AFG   S +   G  ++  ++   +    R  + W   +   ++ +A+ L+NL 
Sbjct: 90  VHFARVAFGAATSSEQFSG-AELHGLVAG-LTDGGRATLDWRVGEETFTKIQARALINLA 147

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQ 182
            +  ++LP GG   ++V+   ++        G  AR  PE    +    +   +    IQ
Sbjct: 148 YLTVSALPMGGAAVVTVRREGDQLFLVGSAEGARARLKPEAVVGLKGERLTEGLAGQWIQ 207

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y++ L A E   RL     ++  V L A L 
Sbjct: 208 PYWLWLTAREAGGRLDL-ATEEGRVALMARLP 238


>gi|295691366|ref|YP_003595059.1| hypothetical protein Cseg_4029 [Caulobacter segnis ATCC 21756]
 gi|295433269|gb|ADG12441.1| Protein of unknown function DUF2328 [Caulobacter segnis ATCC 21756]
          Length = 229

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 6/211 (2%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60
               ++   D  A+L +R+CHD ISP  AI + L+LL++     + ++ M LI  S+   
Sbjct: 17  TPQTDVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPAAQDMREDAMSLIASSARKL 76

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L+F R+AFG + S ++     ++E++ +   A   R  ++W  E   +++  A+ +L
Sbjct: 77  ADLLQFTRVAFGASASAENF-DSRELEKLAQGVFA-HVRPTLNWAIEPQAMNKPSARAVL 134

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSH 179
           N+  +A ++LP GG  T+   ++        +  G  AR  PE    +    +   +   
Sbjct: 135 NIAQIAASALPAGGVATVKGVNADGRFSIIAEAIGPRARLRPEVLAGLKGEPLAEGLGGP 194

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +Q  Y+  L      ++  E+ +D   V +
Sbjct: 195 WVQAAYLNALVRAAGGQIAAEVGEDRASVAA 225


>gi|83859260|ref|ZP_00952781.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852707|gb|EAP90560.1| hypothetical protein OA2633_12685 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 225

 Score =  175 bits (443), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 63/209 (30%), Positives = 102/209 (48%), Gaps = 7/209 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66
           ++ +L ALL SR+CHDI  P  A+  +L +LD+     + D+ + L+R  +     +L++
Sbjct: 8   TAAELAALLSSRVCHDIAGPTSAMGAALSVLDDESALDMRDDAIALLRTGAKQIRAKLEY 67

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+ FG  GS    + L +I+ + E     D R  + W  +   +S+  A++LLNL  + 
Sbjct: 68  ARVCFGAAGSRGGEVSLSEIKSLAEPMFE-DSRPDLVWPSDGGAISKTAARVLLNLIWIG 126

Query: 127 HASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFY 184
             SLPRGG+V I    S        +   G   R  E + + + G   E   D   +Q Y
Sbjct: 127 VDSLPRGGEVIIEASASSDGGARLRVAAKGMRLRLDEAYQKAIRGERPEDGYDGRSVQPY 186

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
           Y  L+A E+  R     +D   V L+AL+
Sbjct: 187 YAGLIARESGGRAEAR-LDGDRVELAALI 214


>gi|126464268|ref|YP_001045381.1| hypothetical protein Rsph17029_3517 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106079|gb|ABN78609.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 198

 Score =  175 bits (443), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            DL ALL SRICHD+ISPIGAI N +E LL +  I    M LI  S   A  R++F R+A
Sbjct: 5   TDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVA 64

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           FG T  +D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++
Sbjct: 65  FGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLAFLLVLCLETAM 121

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             GG++ +   D++    + L    N  +  P+ +  + +   +  + +  +QF  V   
Sbjct: 122 AYGGRIRVERSDAR----WLLVGQANKMKIEPDLWEMLSNPMAQVEMSAARVQFALVPDE 177

Query: 190 AHENKIRLLPEIIDDH 205
                 RL  EI +  
Sbjct: 178 MSRQGRRLTSEIRESE 193


>gi|326386902|ref|ZP_08208516.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208582|gb|EGD59385.1| hypothetical protein Y88_1540 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 217

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 102/216 (47%), Gaps = 9/216 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63
             ++S++L +LL SR+CHD++SP+GA+ N LELL    +  +     +L+  S+ ++  +
Sbjct: 1   MTIASLELASLLASRLCHDMLSPVGAMSNGLELLTEEKDPEMRQRCFELLEQSAKASADK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L+F RLAFG  G     + L +   V++  +  + R+ ++W+     + +   K+LLNL 
Sbjct: 61  LRFFRLAFGAAGGFGDTVPLSEPRAVVDALVGGNGRISLNWSLSGDAMPKSAVKVLLNLA 120

Query: 124 MVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGNV-ESTIDS 178
           ++   +L RGG + I+ +         +   ++ +G    F       +DG +    + S
Sbjct: 121 LIGIEALVRGGTLEIAAEVRGTAEHAVSEIVVRASGPRIAFDPAVGHALDGTLSPDALSS 180

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  L       L   +  D  +V+ A L 
Sbjct: 181 KTAPAVMIHELTSSLGGGLQYHVGADA-LVMGAALP 215


>gi|16127700|ref|NP_422264.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15]
 gi|221236520|ref|YP_002518957.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000]
 gi|13425192|gb|AAK25432.1| hypothetical protein CC_3470 [Caulobacter crescentus CB15]
 gi|148839268|tpg|DAA06031.1| TPA_exp: ChpT [Caulobacter vibrioides]
 gi|220965693|gb|ACL97049.1| histidine phosphotransferase chpT [Caulobacter crescentus NA1000]
          Length = 253

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 6/211 (2%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60
           +   ++   D  A+L +R+CHD ISP  AI + L+LL++     + D+ M LI  S+   
Sbjct: 41  SPEADVQGPDFAAMLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSARKL 100

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L+F R+AFG + S ++     ++E++ +   A   R  + W  E   +++  ++ +L
Sbjct: 101 ADLLQFTRVAFGASASAENF-DSRELEKLAQGVFA-HVRPTLDWQIEPQAMNKPSSRAVL 158

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSH 179
           N+  +A ++LP GG  T+    +           G  AR  PE    +    +   +   
Sbjct: 159 NIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGP 218

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +Q  Y+  L      ++  EI +D   + +
Sbjct: 219 WVQAAYLNALVRAAGGQIAVEIGEDRASIAA 249


>gi|77465006|ref|YP_354509.1| hypothetical protein RSP_3825 [Rhodobacter sphaeroides 2.4.1]
 gi|77389424|gb|ABA80608.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 198

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 9/196 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            DL ALL SRICHD+ISPIGAI N +E LL +  I    M LI  S   A  R++F R+A
Sbjct: 5   TDLTALLGSRICHDLISPIGAIGNGVELLLMDGSIRGPEMALISESVTHANARIRFFRVA 64

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           FG T  +D  IG  +I  ++ D +    R+Q+ W G   DL R   K+   L +    ++
Sbjct: 65  FGATA-LDQRIGRPEILSIVSD-LTRGGRLQIDWEGP-TDLPRREVKLAFLLVLCLETAM 121

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             GG++ +   D++    + L    N  +  P+ +  + +   +  + +  +QF  V   
Sbjct: 122 AYGGRIRVERSDAR----WLLVGQANKMKIEPDLWEMLSNPMAQVEMSAARVQFALVPDE 177

Query: 190 AHENKIRLLPEIIDDH 205
                 RL  EI +  
Sbjct: 178 MSRQGRRLTSEIRETE 193


>gi|294678519|ref|YP_003579134.1| hypothetical protein RCAP_rcc03000 [Rhodobacter capsulatus SB 1003]
 gi|294477339|gb|ADE86727.1| conserved hypothetical protein [Rhodobacter capsulatus SB 1003]
          Length = 210

 Score =  174 bits (442), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 9/195 (4%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMR 68
           S  DLVAL+ SR+CHD+ISP+GAI N +ELL+  G  +   +QLI  S  +A  R+KF R
Sbjct: 17  SEADLVALVGSRLCHDLISPLGAIGNGVELLNMSGLADSPEVQLISQSVAAANARIKFFR 76

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG   SVD  IG  +I  V+E+ I+   RV+  W G   D SR   K++    +    
Sbjct: 77  IAFGQA-SVDQRIGTPEILGVLEE-ISRGGRVKYHWLGA-GDQSRRVVKLIFLGLLCLEP 133

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           +LP GG+V I+ +D +    + L       +   +    + G++  T+    +QF  +  
Sbjct: 134 ALPWGGEVVITEEDGE----WRLVAQAKRTKPDPELWARLSGSL-VTVSPAQVQFLLLPR 188

Query: 189 LAHENKIRLLPEIID 203
            A     R++ ++ +
Sbjct: 189 EAGHQGRRVVWDVAE 203


>gi|254418211|ref|ZP_05031935.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3]
 gi|196184388|gb|EDX79364.1| hypothetical protein BBAL3_521 [Brevundimonas sp. BAL3]
          Length = 236

 Score =  173 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 7/214 (3%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61
           +   +  ++L   + +++CHD ISP GAI + L+L+ +     + ++ + LI  S+   +
Sbjct: 25  LDLPVDGIELATYVAAKLCHDFISPSGAIVSGLDLMRDPSAQDMREDALSLIEQSARKMV 84

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             + F R+AFG   + +      +++ ++   +    R  + W   + + S+ +A+ L N
Sbjct: 85  ALVHFARVAFGAATTSERFTAR-ELQSLVTG-LTEGGRASLDWRIHEGEFSKPQARALTN 142

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHD 180
           L  +   +LP GG   I  +             G  AR  PE  T +    +   +    
Sbjct: 143 LAYLTVGALPMGGDAVIQSRVENGFLFIEGFAEGARARLKPEAVTGLAGERLIEGLAGQW 202

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           IQ Y++ L   E    L    ++D  VVL A + 
Sbjct: 203 IQPYWLWLTVVEAGGSLHV-TVEDGRVVLVARMP 235


>gi|254488919|ref|ZP_05102124.1| conserved hypothetical protein [Roseobacter sp. GAI101]
 gi|214045788|gb|EEB86426.1| conserved hypothetical protein [Roseobacter sp. GAI101]
          Length = 198

 Score =  173 bits (439), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 8/203 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK 65
            + S ++   L+ SRICHD+ISPIGAI+N LEL+    G     M+LI  S  SA  R++
Sbjct: 1   MSRSDLEFATLIGSRICHDLISPIGAINNGLELVSMSGGGSGPEMELIGDSVGSASARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+AFG  G  D  +G  ++  ++ D    + R  V+W        R   ++     + 
Sbjct: 61  FFRIAFGAAG--DQSLGSAEVTSILRDLY-RESRSSVAWNIPDAQ-PRSDVRLAFLALLC 116

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
               +P GG V +    +K     +      L   P+ +  +   + +  +    +QF  
Sbjct: 117 LETGMPYGGAVVVERDGAKWVIRGTAH---KLIIDPDLWALLATQDQKLKLKPAHVQFGL 173

Query: 186 VILLAHENKIRLLPEIIDDHNVV 208
           +   A ++  ++  +  +   ++
Sbjct: 174 LPASASDDGRQITSKATETEIMI 196


>gi|83953645|ref|ZP_00962366.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1]
 gi|83841590|gb|EAP80759.1| hypothetical protein NAS141_05458 [Sulfitobacter sp. NAS-14.1]
          Length = 200

 Score =  172 bits (436), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 10/196 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMR 68
           +  DL AL+ SRICHD+ISP+GAI+N LELL   G+     + LI  S  +A  RL+F R
Sbjct: 4   TDTDLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG   +    +   +   ++ D  A   + QVSW  + +   R   +++    +    
Sbjct: 64  VAFGAGDAQP--VPAQETSGILRDLYA-QSKWQVSW-PDGVAAPRNALRMVFLSLLCLET 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVI 187
            +P GG++TI  +D+     + +    +          ++ G      + +  +QF  + 
Sbjct: 120 GMPYGGQITIDHRDAG----WDITGTADRLSIHAALWGVLAGQSRAERLTASQVQFGLLP 175

Query: 188 LLAHENKIRLLPEIID 203
            +  ++  +L   + +
Sbjct: 176 AIVKDSGQQLTSIVTE 191


>gi|83942425|ref|ZP_00954886.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36]
 gi|83846518|gb|EAP84394.1| hypothetical protein EE36_15332 [Sulfitobacter sp. EE-36]
          Length = 200

 Score =  171 bits (434), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 10/196 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMR 68
           +  DL AL+ SRICHD+ISP+GAI+N LELL   G+     + LI  S  +A  RL+F R
Sbjct: 4   TDTDLAALIGSRICHDLISPVGAINNGLELLLMSGMNMSPEVALIDESVRNASARLRFFR 63

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +AFG   +    +   +   ++ D  A   + QVSW  + +   R   +++    +    
Sbjct: 64  VAFGSGDAQP--VPAQETSGILRDLYA-QSKWQVSW-PDGVAAPRNALRMVFLSLLCLET 119

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVI 187
            +P GG++ I  +D+     + +    +          ++ G      + +  +QF  + 
Sbjct: 120 GMPYGGQINIDHRDAG----WDITGTADRLSINAALWGVLAGQSRAERLTASQVQFGLLP 175

Query: 188 LLAHENKIRLLPEIID 203
            +  ++  +L   + +
Sbjct: 176 AIVKDSGQQLTSIVTE 191


>gi|254461651|ref|ZP_05075067.1| conserved hypothetical protein [Rhodobacterales bacterium HTCC2083]
 gi|206678240|gb|EDZ42727.1| conserved hypothetical protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 204

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 16/211 (7%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65
            +   +   AL+ +RICHD+ISPIGAI+N +ELL   G  +   ++LI  S  +A  R++
Sbjct: 1   MDEHKLQFSALVGARICHDLISPIGAINNGMELLSMSGAPQSPEIELIAQSVDAANARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F R+A+G T S +  +G  +I  ++ D      R+ ++W   + D++R   +++      
Sbjct: 61  FFRIAYGAT-STEQFLGRSEITSILRD-FTKGSRLVLNWHPLE-DVTRSEVQLVFLAIQC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-------STIDS 178
           A  +LP GG V I     +    +SL ++G      +     + G  E        TI +
Sbjct: 118 AEQALPYGGHVEI----ERLRGRWSLALSGERISLDQDLWDSLAGISEFKPEAYRETIPA 173

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           H +QF  + + A +          +    +L
Sbjct: 174 H-VQFLLLPMHARDLDRTPNYTQSETEVTLL 203


>gi|167644070|ref|YP_001681733.1| hypothetical protein Caul_0097 [Caulobacter sp. K31]
 gi|167346500|gb|ABZ69235.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 230

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 7/214 (3%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61
              +++  D  AL+ +R+CHD ISP  AI + L+LL++     + ++ M LI  S+    
Sbjct: 19  PELDVNGPDFAALVAARLCHDFISPASAIVSGLDLLEDPSAQDMREDAMSLISSSARKLA 78

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L+F R+AFG + S ++     ++E++ +   A   R  + W      +++  A+ +LN
Sbjct: 79  DLLQFTRVAFGASASAENF-DSRELEKLAQGVFA-HVRPTMDWAIPPSTMNKASARAILN 136

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHD 180
           +  +A ++LP GGK T+      +    +    G  AR  PE    +    +   +    
Sbjct: 137 IAQIAASALPAGGKATLRAVVLDDRVAITADSVGPRARLRPEVLAGLKGEALSEGLGGPW 196

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +Q  Y+  L      ++  E+ +D  V L+A + 
Sbjct: 197 VQAAYLHALVRAAGGQIGVELSED-RVSLAAWVP 229


>gi|126736805|ref|ZP_01752542.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2]
 gi|126713706|gb|EBA10580.1| hypothetical protein RCCS2_00065 [Roseobacter sp. CCS2]
          Length = 196

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 9/199 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLA 70
            DL AL+ SRICHD+ISPIGAI N +ELL     +    M+LI  S  +A  R+++ R+A
Sbjct: 3   PDLAALVGSRICHDLISPIGAIGNGVELLALTDGDTGAEMELINESVQNASARIRYFRIA 62

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           +G   S + ++   +I  ++    A   R+   W  +  D  R   +  L       ASL
Sbjct: 63  YGAA-SEEQMVSRSEILSILAA-TARGGRINYIWKID-GDQPRRLVRCALLTLQAIEASL 119

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVILL 189
           P GG + I+ ++     ++ ++  G       E +  ++   V     +  +QF  +  +
Sbjct: 120 PLGGDIHITQEEE----MWVMRGEGPRLTLDKELWNNLLSPQVGFHYTAAHVQFALLPGV 175

Query: 190 AHENKIRLLPEIIDDHNVV 208
             E    L  +   +H VV
Sbjct: 176 LAEAGRVLQFKHEANHMVV 194


>gi|114766184|ref|ZP_01445184.1| hypothetical protein 1100011001298_R2601_22457 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541555|gb|EAU44598.1| hypothetical protein R2601_22457 [Roseovarius sp. HTCC2601]
          Length = 200

 Score =  167 bits (424), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLK 65
            +  S  +  L+ SRICHD++SP+GAI N LEL+   G    E M LI  S  SA  R+ 
Sbjct: 1   MSNDSARIAGLVGSRICHDLVSPVGAISNGLELIALAGQPGPEEMALISQSCSSATARIN 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             R+AFG   S D  IG  +  +++  + A   R+ + W     D  R+  ++ +   + 
Sbjct: 61  LFRMAFGAA-SADQQIGGAEARKLLAGYCA-GGRLSIDW-LPSGDAERQDMQLAMLAALC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184
             ++LP GGKV ++    ++   + +   G         +  +  G +   +    + F 
Sbjct: 118 CESALPLGGKVAVA----EDGGGWRVTGTGPRLNIEAAAWAMLSGGALPDDLPPARVHFA 173

Query: 185 YVILLAHENKIRLLPEIIDDHNVVL 209
            +  LA E   +L     +    V 
Sbjct: 174 LLGALAPERGRKLDVSTGEAAVSVA 198


>gi|255261517|ref|ZP_05340859.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255103852|gb|EET46526.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 204

 Score =  162 bits (410), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/201 (28%), Positives = 91/201 (45%), Gaps = 10/201 (4%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRL 69
           S  L AL+ SRICHD+ISP+GAI N +ELL+   + D   +QLI  S  +A  R+ F R+
Sbjct: 9   SAQLSALVGSRICHDLISPLGAISNGIELLEMSNLADTPEVQLIAESIANANARILFFRV 68

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           AFG +      I   +I Q +   IA   RVQ  W     D SR   +IL  L +   ++
Sbjct: 69  AFGSSTET-QRINQSEINQTL-GAIAAGARVQYRWQAA-GDHSRPDVRILFLLILCIESA 125

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVI 187
           +  GG++T+   D+K    + +    +  +  +     +         I +  + F  V 
Sbjct: 126 MAFGGEITVQSVDAK----WRICGEADKLKIDQPLWDTLSAPSSQAAKIPASAVHFALVT 181

Query: 188 LLAHENKIRLLPEIIDDHNVV 208
                   RL  ++ D    +
Sbjct: 182 EHCRAADRRLKVDLTDQKIRI 202


>gi|159044019|ref|YP_001532813.1| hypothetical protein Dshi_1470 [Dinoroseobacter shibae DFL 12]
 gi|157911779|gb|ABV93212.1| conserved hypothetical protein [Dinoroseobacter shibae DFL 12]
          Length = 204

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 14/203 (6%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLAF 71
           DL AL+ SRICHD+ISP+GAI N LELL   G  E   M LI  S  SA  R++F R+A+
Sbjct: 12  DLSALIGSRICHDLISPLGAIGNGLELLQMSGASESPEMTLIADSVTSANARIRFFRIAY 71

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G     + +I   ++   +        R+Q+ W  E  D+ R  AK           ++P
Sbjct: 72  GDA-VQNQMIKGAELRGALHGSYQ-GSRLQIDWQPE--DMLRSTAKRGFLALQCLETAMP 127

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVIL 188
            GG++      ++      L   G+  RF      +  +        +    +QF  +  
Sbjct: 128 YGGRIRAVDVGARG-----LVFEGSAERFAYDATLWEGLTQNGPWDGVRPAQVQFPLLAE 182

Query: 189 LAHENKIRLLPEIIDDHNVVLSA 211
           LA E    +      D  + LS 
Sbjct: 183 LAREAGNAISVSRT-DATLTLSV 204


>gi|315497651|ref|YP_004086455.1| hypothetical protein Astex_0617 [Asticcacaulis excentricus CB 48]
 gi|315415663|gb|ADU12304.1| Protein of unknown function DUF2328 [Asticcacaulis excentricus CB
           48]
          Length = 234

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/210 (22%), Positives = 99/210 (47%), Gaps = 6/210 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66
           +  +L   L +++CHD ISP GAI + L+LL +     + D+ + LI+ S+   +  + F
Sbjct: 26  NPHELATQLVAKLCHDFISPTGAIISGLDLLSDPSAQDMRDDAVNLIQASATKLVTLVHF 85

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG   S ++     ++ +++ D  +  +        +++   +  A+ L+NL  +A
Sbjct: 86  ARVAFGAATSAEAF-SAKELNKILSDVFSTMRATLDFDVADEVVFEKPAARALMNLGYIA 144

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYY 185
             +LP GG  T+  +++      + + NG  AR  PE    +    +   +    IQ ++
Sbjct: 145 GNALPTGGTATLRREETDEAITLTAQSNGPRARLKPEAVEGLNGQPLSDGLSGQWIQPFW 204

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +  E    L    +D  ++ +  +L K
Sbjct: 205 LHSVVQEAGGTLRV-TLDPDSLGIKIVLPK 233


>gi|84501044|ref|ZP_00999279.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597]
 gi|84391111|gb|EAQ03529.1| hypothetical protein OB2597_02877 [Oceanicola batsensis HTCC2597]
          Length = 201

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 51/208 (24%), Positives = 90/208 (43%), Gaps = 10/208 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
               +  L AL+ SRICHD+ISP+GAI N +ELL         + LI  S  +A  R++F
Sbjct: 1   MTQDNQRLAALIGSRICHDLISPVGAIQNGVELLAMERQAGPELALIEDSVNNASARIRF 60

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
           +R+AFG  G     +   +I   + D I    R++  W       +R   + +    M  
Sbjct: 61  LRIAFGLAG-AGQPMSPQEICGTLSD-IGRAGRIRHDW-IPVETCTRRETQEVFLAMMCL 117

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFY 184
            +++PRGG ++++         +++    +  R      +++  N     D     +QF 
Sbjct: 118 ESAMPRGGTISVA----TGGQGWTVSGPADPDRPDPALWRMLASNAVGVADVVPAQVQFA 173

Query: 185 YV-ILLAHENKIRLLPEIIDDHNVVLSA 211
           ++   LA      L+    +   + L A
Sbjct: 174 FLSGQLADRGVAALVVTAGEGITIRLPA 201


>gi|126726414|ref|ZP_01742255.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium
           HTCC2150]
 gi|126704277|gb|EBA03369.1| hypothetical protein RB2150_01899 [Rhodobacterales bacterium
           HTCC2150]
          Length = 200

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/201 (29%), Positives = 100/201 (49%), Gaps = 17/201 (8%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65
            ++ +  L AL+ SRICHD+I+P+GAI N LELL   G      + LI  S  +A  R+K
Sbjct: 1   MSIDAEKLCALVSSRICHDVINPLGAIGNGLELLSLGGDLSGPEIDLIDASHKNAEARVK 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERAKILLNL 122
           F+R AFG TG + + I   D+E+  +++ A      R+++        L R   K     
Sbjct: 61  FLRHAFGETG-IGATINGQDVEKTAQNYCATSNIKARLKL-----ANSLPRPEVKRTYLA 114

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-FPEKFTQIVDGNVES-TIDSHD 180
            M    +L  GG + +S  +S     + +  N    R   + +T ++  +  +  I++ +
Sbjct: 115 IMCMMQTLSFGGDIHVSQSNSG----WKIVGNAERRRNIKDLWTALLINDFSTLEIEASN 170

Query: 181 IQFYYVIL-LAHENKIRLLPE 200
           IQF  + L L+  +KI +L E
Sbjct: 171 IQFVLLSLELSKAHKIPMLQE 191


>gi|85702935|ref|ZP_01034039.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217]
 gi|85671863|gb|EAQ26720.1| hypothetical protein ROS217_19377 [Roseovarius sp. 217]
          Length = 199

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 7/203 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
               S  L AL+ SRICHD++SP+GAI N LELL   G  +   + LI  S+ +A  R++
Sbjct: 1   MPQHSQPLAALIASRICHDLVSPLGAISNGLELLHLSGVPQSPELTLITSSATNATARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F RLAFG        I   D+  ++   + V+ R+ +       D+    A+ LL   + 
Sbjct: 61  FFRLAFGQA-DKGQSIHAKDLCDILTA-VHVEGRITLDLRL-SDDIPHPMAQALLLTILC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
              ++P GG + +S  + +     +   +G L      +  +        I +  + F  
Sbjct: 118 VEQAMPYGGLLHVSRLNDRWHITAT---SGRLTPDLTLWAALSGSEKWPDISASQVHFLL 174

Query: 186 VILLAHENKIRLLPEIIDDHNVV 208
           +          +   + D    V
Sbjct: 175 LFQCLENQSSHIDTTLSDTEFRV 197


>gi|329849905|ref|ZP_08264751.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19]
 gi|328841816|gb|EGF91386.1| hypothetical protein ABI_28020 [Asticcacaulis biprosthecum C19]
          Length = 254

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 7/206 (3%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61
              + +S DL   + +++CHD ISP GAI + L+LLD+     +  E + LI  S+   +
Sbjct: 41  AAADFTSHDLATQMVAKLCHDFISPAGAIMSGLDLLDDPSAQDMRQEALNLIAASAKKMV 100

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILL 120
             + F R+AFG + S ++  G G + +++ D  +   R Q+ +  +   +  +  A+ LL
Sbjct: 101 TLVHFARVAFGASNSAEAFSG-GQLNKILGDVFSTM-RAQLDFAIDGNLIFPKAAARALL 158

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSH 179
           NL ++A  SLP GG   +  + S +      +  G  AR   + T+ + G  +   +   
Sbjct: 159 NLGLIAGNSLPTGGTARLEARFSDDGIRLIAESRGPRARLKAEATEGLKGLPLSDGLAGQ 218

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            IQ +++     E    L      D 
Sbjct: 219 WIQPHWLYATVQEAGGTLEFRADTDA 244


>gi|83952102|ref|ZP_00960834.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM]
 gi|83837108|gb|EAP76405.1| hypothetical protein ISM_16105 [Roseovarius nubinhibens ISM]
          Length = 179

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 26  IISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG 84
           +ISP+GAI+N LELLD     +     LIR S+  A  R++F RLAFG     D  +   
Sbjct: 1   MISPVGAINNGLELLDLAHSAQGAEFTLIRDSAAQATSRIRFFRLAFGAA-HKDQAVSAP 59

Query: 85  DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK 144
           ++  ++         ++V+W  E+  + R RAK      +     LP GG++ ++   + 
Sbjct: 60  EMASLLRHCFP--GPLRVTWEVEETLI-RPRAKAACLAILCLDRCLPYGGEIRVAPHGA- 115

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
                ++       R  + +  ++DG      +   ++QF  +   A  N + L  +  D
Sbjct: 116 ---ALAITTQSEGLRAHDPYWSLLDGRPIPEDLPPAEVQFALLPHTAQRNDLNLSAQHTD 172

Query: 204 DHNVV 208
           DH  +
Sbjct: 173 DHAQI 177


>gi|310815613|ref|YP_003963577.1| hypothetical protein EIO_1132 [Ketogulonicigenium vulgare Y25]
 gi|308754348|gb|ADO42277.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 194

 Score =  147 bits (372), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 9/187 (4%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
            DL AL+ SRI HD+ +P+GAI N +ELL  V      ++LI  S  SA  RL+ +RLAF
Sbjct: 3   ADLTALVTSRISHDLFNPLGAISNGVELLGLV-APSPELELIGDSVKSATARLQMLRLAF 61

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           G  GS    +   D    +   ++   R +         + R  AK+L  L +   ASLP
Sbjct: 62  GAAGS--GAVTARDWAATLAG-VSAGGRGKYKHNSPTP-VPRNEAKVLALLGLCCDASLP 117

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYYVILLA 190
            GG++  S   +     +S++ +G   RF       V G      ++   +QF  V    
Sbjct: 118 YGGEIVFSPHGNGG---WSVQASGREVRFNAHLWGCVTGLAPREPVEPSHVQFLLVAAAV 174

Query: 191 HENKIRL 197
            +   ++
Sbjct: 175 ADLGRQI 181


>gi|103487226|ref|YP_616787.1| hypothetical protein Sala_1741 [Sphingopyxis alaskensis RB2256]
 gi|98977303|gb|ABF53454.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256]
          Length = 214

 Score =  147 bits (372), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
            +   +D  ++L SR+CHD++SP+GA  N LELL +     +    ++L+  S+ ++  +
Sbjct: 1   MSDDRVDFASMLASRLCHDLLSPVGAFANGLELLADEKDPEMRARCIELLEQSARTSANK 60

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           LKF RLAFG  G    L+   + +  IE  I  D+ + ++W      L +   KI+LNL 
Sbjct: 61  LKFFRLAFGSAGGFGELVPPEEAKSAIEGIIG-DRAITLNWMIGADPLPKPAVKIILNLA 119

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-GNVESTIDSHDIQ 182
           ++   +L RGG++ +  +   +    +L +            +I+  G   S + S    
Sbjct: 120 LLLVDALVRGGRLDVGCEKQADGIEIALHVEAERIFLDADVERILAEGEAASPMTSRTAP 179

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              V  +A ++   ++       ++++ A+L
Sbjct: 180 AVLVQAVARQSDGTVMLARETPTSLLVGAVL 210


>gi|119387209|ref|YP_918264.1| hypothetical protein Pden_4504 [Paracoccus denitrificans PD1222]
 gi|119377804|gb|ABL72568.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
          Length = 218

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 15/206 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58
                ++   L AL+ SR+CHDI+SP+GAI N LELL   G          MQLI  S  
Sbjct: 11  EPPGAIAPERLAALVGSRLCHDIVSPLGAIGNGLELLQLSGAWPGIDASPEMQLIAESVE 70

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +A  R+++ R+AFG+    D  + + ++  +  D +    R+++    E  DL R  A++
Sbjct: 71  AARARVRWFRVAFGHAA-PDQRLSMAELAALFAD-VEKGGRIRLRLEAE-GDLPRPEARM 127

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           +L   M    ++P GG V +     +  + + L    +  +       +     G     
Sbjct: 128 ILLALMCLETAMPWGGSVLVC----RGASGWRLVAECSRTKPDPALWSWLDAAPGRERPE 183

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEI 201
             + ++ F  +   A      L  E+
Sbjct: 184 AGASEVHFPLLAGFARAAGRPLAWEL 209


>gi|288962381|ref|YP_003452676.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510]
 gi|288914647|dbj|BAI76132.1| hypothetical protein AZL_d03060 [Azospirillum sp. B510]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 18/211 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAIIRLK 65
            LL S++CHD++SP+GAI N LEL++E           G   E ++LI  SS  A  RL+
Sbjct: 17  ELLASKLCHDLVSPVGAIRNGLELIEEMQEDEDGGAIGGFLGEAVKLIDHSSGQADRRLR 76

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLN 121
             RLA+G  G      G GD       ++    R ++ W      +     R   K+LLN
Sbjct: 77  VFRLAYGQAGR--DQKGFGDARAAAAGYVE-GGRTRLDWPERVPHDMTAQRRGVVKLLLN 133

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING-NLARFPEKFTQIVDGNVESTIDSHD 180
           L M+A  +L  GG V+++    +     ++   G      P+    +      + +    
Sbjct: 134 LVMLADEALTHGGVVSVAADGDETAGGVTVTAAGRPGGLNPDAAAALAGTASAAALTPRT 193

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           I  Y    LA  +  R+         +VL+A
Sbjct: 194 IHAYITGRLAEADGFRIGVVPEGGERLVLTA 224


>gi|149915194|ref|ZP_01903722.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b]
 gi|149810915|gb|EDM70754.1| hypothetical protein RAZWK3B_15193 [Roseobacter sp. AzwK-3b]
          Length = 199

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 9/204 (4%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLK 65
               S ++ AL  SRICHD+ISPIGA+ N +EL+   G  +   M L+  S+  A  R++
Sbjct: 1   MPYHSHNIAALTASRICHDLISPIGAVANGMELMQFAGASDGPEMALVSESAAHAKARIR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F RL FG   S   ++   ++ +++        R+++  T ++  L R  A+ +L   + 
Sbjct: 61  FFRLTFGIA-SDSQMVAAEEVNEILNAIYG-GTRIEIETTLDRS-LPRAMAQAVLLAVLC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFY 184
           A   L  GG++ +          + ++      R        + G      I    +QF 
Sbjct: 118 AEHGLGVGGQLRVHEVGE----HWQIEARSPRLRADPGLWGSLTGQPVPQDIPPAAVQFL 173

Query: 185 YVILLAHENKIRLLPEIIDDHNVV 208
            + L+  +        + +D   +
Sbjct: 174 LLPLILTDLGRTCACSLTEDSARI 197


>gi|304321420|ref|YP_003855063.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis
           HTCC2503]
 gi|303300322|gb|ADM09921.1| hypothetical protein PB2503_09339 [Parvularcula bermudensis
           HTCC2503]
          Length = 208

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 93/209 (44%), Gaps = 7/209 (3%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIR 63
                ++ + +L+ SR+CHD+   +GAI   LE+ ++   E      Q++  S+  A+  
Sbjct: 3   AIEAEALRVSSLMSSRLCHDLAGVVGAISAGLEMSEDEDPEMASHAKQVVTESTDKALAI 62

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           +K  RLA+G +G  +  + + +  +  + F A  +  ++ W  E+  + + + + +LN+ 
Sbjct: 63  VKLARLAYGSSGGFEGDLDMNEAREAAKGFFAHAE-AELVWDLEEYAVPKWQGRAMLNVL 121

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
           +V   ++PR      +V+ S+     +    G   +  +       G  +  ++  ++  
Sbjct: 122 IVMERAVPRS---PSTVRLSRVNGHLTASATGKKVKAKDPLLGAFSGQSDD-LEPKEMPA 177

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           Y   LLA     R     + D  + ++ +
Sbjct: 178 YLAYLLAQSGGARFDTHFVLDEELTVTLV 206


>gi|89069452|ref|ZP_01156802.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516]
 gi|89044933|gb|EAR51020.1| hypothetical protein OG2516_03959 [Oceanicola granulosus HTCC2516]
          Length = 198

 Score =  145 bits (365), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 12/202 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRL 64
             + S  +  L+ SRICHD+ISP+GAI N LELL      + +  + LI  S  +A  RL
Sbjct: 1   MKMDSHGVSDLVASRICHDVISPLGAIGNGLELLTLANPDLPEAELALIGESVAAAQARL 60

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +F R AFG     D+ +   ++ +V+ D +A     +  W   + D  R   +      +
Sbjct: 61  QFFRFAFGSA--ADTPVAGREVVRVL-DAMAASGFARCRWEVAE-DPPRGLVRCAFLALL 116

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQIVDGNVESTIDSHDIQF 183
               +L RG  + +SV+D +    +S+   G    R PE +  +  G+    + +  +QF
Sbjct: 117 CVETALGRGAALRVSVRDGR----WSVVGEGPVRHRDPEVWAALAGGDP-GALTAAQVQF 171

Query: 184 YYVILLAHENKIRLLPEIIDDH 205
             +         R         
Sbjct: 172 MLLPPALAALGRRAEVTESGGA 193


>gi|312113704|ref|YP_004011300.1| hypothetical protein Rvan_0925 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218833|gb|ADP70201.1| Protein of unknown function DUF2328 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 217

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 107/207 (51%), Gaps = 9/207 (4%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65
           L    L AL+ S+ICHD+   IGAI+N LELL+E   ED     ++LI+ S+ +A  +L 
Sbjct: 6   LDDTALAALISSKICHDLAGQIGAINNGLELLEEENDEDTRFYALELIQNSAKAAWAQLD 65

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           F RLAFG + S+ +L+ +  IEQV   ++   KR ++ W     ++ +E A++L+ L  V
Sbjct: 66  FNRLAFGVSSSLGALVPVQHIEQVARRYLENGKR-RLHWQANVPEIEKEHARLLMALLGV 124

Query: 126 AHASLPRGGKVTISVQDSKNENI-----FSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           +  +LP GG   + +  SK           +   G  AR PE   ++  G++  TID   
Sbjct: 125 SINALPAGGDYYLGLSASKTRAGRSRFKLIILCRGRAARVPEGVAEVFAGDMTRTIDGRL 184

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNV 207
           +  YY   LA E  ++L      +  +
Sbjct: 185 VIAYYATRLATEASLKLSALKEGEDIL 211


>gi|46200921|ref|ZP_00056203.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 205

 Score =  138 bits (349), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 8/191 (4%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
              L  LLC+R+CHD+ SP+GA    +ELL++ G + E + L+  S  +A  RLKF+R A
Sbjct: 6   DTKLSELLCARLCHDLASPLGAASAGMELLED-GDDPETLALVSASMAAATARLKFLRAA 64

Query: 71  FGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
            G    +  +   LGD+ +   +  AV   + + W+ ++ ++  E A++LLNL ++A  +
Sbjct: 65  LGPANDMPHTPKSLGDLIRAYLNG-AVTGGITLDWSSDRPEMDGETARLLLNLVLIARDA 123

Query: 130 LPRGGKVTISVQ--DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYV 186
           LPRGG+++   +      +    +  +G       E    ++D    S       Q ++ 
Sbjct: 124 LPRGGRISARCESSQGGGDAGLRVIASGEGLGLTAEARLVLLDDAPPSG--PRGAQAWFA 181

Query: 187 ILLAHENKIRL 197
           + LA    +++
Sbjct: 182 LHLARGKGLKI 192


>gi|83309426|ref|YP_419690.1| hypothetical protein amb0327 [Magnetospirillum magneticum AMB-1]
 gi|82944267|dbj|BAE49131.1| Uncharacterized protein [Magnetospirillum magneticum AMB-1]
          Length = 205

 Score =  136 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 8/204 (3%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
                 LLC+R+CHD+ SP+GA    LELL++ G + E ++L+  S  +A  RLKF+R  
Sbjct: 6   DTKFSELLCARLCHDLASPLGAAAAGLELLED-GNDPETLELVSASMGAATARLKFLRAT 64

Query: 71  FGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
            G    +  +   LGD+ +      AV   + + W+ E+ ++  E  ++ LNL ++A  +
Sbjct: 65  LGPANDMPHTQKSLGDLMRAYLSG-AVTGGITLDWSSERPEIDGETGRLRLNLVLIARDA 123

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGN---LARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           LPRGGK+      S ++    L++  +   +    E    ++DG   S       Q  + 
Sbjct: 124 LPRGGKILARCAGSGSDGEAGLRVTASGEGMGLTAEARLVLLDGAPPSG--PRGAQAGFA 181

Query: 187 ILLAHENKIRLLPEIIDDHNVVLS 210
           + LAH N +++          +++
Sbjct: 182 LHLAHRNGLKIRLTPGAGEISIMA 205


>gi|218662514|ref|ZP_03518444.1| hypothetical protein RetlI_25280 [Rhizobium etli IE4771]
          Length = 100

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+KN    LS  DL ALLCSR+CHD+ISP+GAI+N LELLDE G + + M LIR S+++A
Sbjct: 18  MSKNPNLTLSGPDLAALLCSRVCHDVISPVGAINNGLELLDEGGADADAMDLIRTSALNA 77

Query: 61  IIRLKFMRLAFGYTGSVDSLIGL 83
            +RLKF RLAFG +GSV + I  
Sbjct: 78  SVRLKFARLAFGASGSVGASIDT 100


>gi|149202794|ref|ZP_01879766.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035]
 gi|149144076|gb|EDM32110.1| hypothetical protein RTM1035_09254 [Roseovarius sp. TM1035]
          Length = 199

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 7/203 (3%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLK 65
               +  L AL+ SRICHD++SP+GAI N LEL+   G +E   M LI  S+  A+ R++
Sbjct: 1   MPQHTHALGALIASRICHDLVSPLGAIGNGLELMGLSGTMEGPEMALIAASAAQALARVR 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             RLAFG     D  +   +  + I   +    R+ ++       L R  A+ILL   + 
Sbjct: 61  LFRLAFGQA--EDDHVTRAEELRDILGTLHAGGRITLTLQITAP-LPRPMAQILLLGLLC 117

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
              +LP+GG++ +S      +    +     LA   + +  +             + F  
Sbjct: 118 VEQALPQGGQLAVSQTPGGWQI---VATAARLAPDVDLWRALCAEGPWPRPTPAQVHFQL 174

Query: 186 VILLAHENKIRLLPEIIDDHNVV 208
           +          L  ++ D    V
Sbjct: 175 LHHCLAAQGATLQRQLTDTEFRV 197


>gi|89054929|ref|YP_510380.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1]
 gi|88864478|gb|ABD55355.1| hypothetical protein Jann_2438 [Jannaschia sp. CCS1]
          Length = 180

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 10/174 (5%)

Query: 30  IGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88
           +GAI N +ELL+  G  +   + LIR +  +A  R++  RLAFG   S   +  L + + 
Sbjct: 1   MGAIGNGVELLEMTGKADGPEVDLIRDAVRAAEARIRLFRLAFGGA-SSGQVTSLREAKT 59

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           V+E +     RV V W     D SR+  K+ L + + A  +LP GG V I          
Sbjct: 60  VVEGYF-HQSRVAVVWMANS-DRSRQETKMALLMLLCAETALPMGGTVRIGP---DPTGH 114

Query: 149 FSLKINGNLARFPEKFTQIV---DGNVESTIDSHDIQFYYVILLAHENKIRLLP 199
           + L+  G      +    ++       +  +   D+QF  +   A    + L  
Sbjct: 115 WQLEATGPRLNMVDAVWDVLRTGTAPPDEPLRPADVQFPMLFQAAQSLGLTLNY 168


>gi|254449745|ref|ZP_05063182.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198264151|gb|EDY88421.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 176

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 9/177 (5%)

Query: 30  IGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88
           +GAI N +ELL   G      M L+  S  +A  ++KF+R+AFG     D  +  G+I  
Sbjct: 1   MGAIGNGIELLGLAGVAAGPKMALVSESVENATAKIKFLRMAFGEAA-QDQTVSRGEILS 59

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
            +E  +A   R+  SW     D  R   +  L   M    +LP GG + I++    ++N 
Sbjct: 60  TLEA-MARGGRLSYSWNVA-GDPQRLEVRTALISVMCLETALPMGGDIEITL----DQNR 113

Query: 149 FSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           +++    +     P+ +  +  G  ++ + +  + F  +  +A E    L      D
Sbjct: 114 WTISAKHDRLTLDPDLWVPLSKGAYQNDLSASKVHFGLLPEMAIEAGRTLSLTHGVD 170


>gi|84687193|ref|ZP_01015074.1| hypothetical protein 1099457000248_RB2654_04526 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664781|gb|EAQ11264.1| hypothetical protein RB2654_04526 [Rhodobacterales bacterium
           HTCC2654]
          Length = 198

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 12/197 (6%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKF 66
              + DLVAL+ SRICHD++SP+GAI N +EL+   G E+   M L+  S ++A  R++F
Sbjct: 6   TAPAPDLVALVGSRICHDLVSPLGAIGNGIELMTLTGGEETPEMALVNESLVNARGRIRF 65

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
            R+AFG   S  +++  GD+ + +     ++ +  V W     D++R  AK+ L      
Sbjct: 66  FRIAFGAANS-GAVVRAGDLAEAVAG---IETKAVVEWRIP-GDMARTDAKLALLALNCL 120

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            +++P GG++++     ++     +       R       ++DG    T    +I F  +
Sbjct: 121 ASAMPYGGRISV----ERDAGGLVVTGRAERFRIEVDDWALIDGR--GTATPANIHFALL 174

Query: 187 ILLAHENKIRLLPEIID 203
              A     ++    ++
Sbjct: 175 PEEAFAQGRQVTQAQLE 191


>gi|126737744|ref|ZP_01753474.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6]
 gi|126721137|gb|EBA17841.1| hypothetical protein RSK20926_18922 [Roseobacter sp. SK209-2-6]
          Length = 163

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   ++LI  S ++A  R++F R+AFG  G  +  +G  +I  ++ D ++   R+  SWT
Sbjct: 6   DGPELELISDSVLNANARIRFFRVAFGAAG--EQQMGRAEIISILAD-MSKAGRMSYSWT 62

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +   SRE  +++    +   ++LP GG+VT+          +S+   G      E   
Sbjct: 63  PLEGC-SREEVRMVFLALLCLESALPYGGQVTMLCSGQ----SWSITGEGTKLNLDESLW 117

Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
             +DG +  + I    +QF  + + A +   R+  +   +   +
Sbjct: 118 GHLDGSDDAAAITPALVQFAMLPVAAKQAGRRIQFDQTLEKITI 161


>gi|83591859|ref|YP_425611.1| hypothetical protein Rru_A0520 [Rhodospirillum rubrum ATCC 11170]
 gi|83574773|gb|ABC21324.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 224

 Score =  118 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 82/203 (40%), Gaps = 9/203 (4%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
             +DL  +LC+R+CHD+   IGA++    L   +    + E + L+  S+  A +RLK +
Sbjct: 27  EDLDLALMLCTRLCHDLAGSIGAVNTGAELLEEEGEAFDPETLALLADSARGAALRLKVL 86

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           R+A G          L +  + +   +A   R          D      ++L+NL MVA 
Sbjct: 87  RMAMGLVRGRQPT--LAEAAEGLGGLLAASGRRFALGDPAMGDPGAPTVQLLVNLAMVAA 144

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
              P+  ++T+   +      + +   G        + Q + G  +   D   +Q +   
Sbjct: 145 DVWPKAAEITLGATEDG----YGVWARGAAGPPSASWDQALAGG-DDVPDPRTVQAWLTK 199

Query: 188 LLAHENKIRLLPEIIDDHNVVLS 210
            LA    + +L        ++L+
Sbjct: 200 RLAARLGMAILIPSSQAGTLLLT 222


>gi|209965054|ref|YP_002297969.1| hypothetical protein RC1_1759 [Rhodospirillum centenum SW]
 gi|209958520|gb|ACI99156.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 212

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 16/213 (7%)

Query: 7   FNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
            +  S D     V LL SRICHD++SP+GAI+N +EL+DE+  G   E + LI  S+ +A
Sbjct: 1   MSPESPDFEPRAVELLVSRICHDLVSPVGAINNGVELIDEMGLGAGAEALTLIADSAEAA 60

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKIL 119
             RL+  R AFG  G  D  +        +E +     RV++ W  +      R   K+L
Sbjct: 61  ARRLRLFRFAFGAAGGQDG-LDPAQARLTLEGWF-RGGRVRIDWQADLPARPPRGLLKLL 118

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDS 178
           L   ++A  +LP GG V +  + +      SL+  G  A   E+    + G    + +  
Sbjct: 119 LIAALLADEALPAGGTVRVVREGAG----VSLQGTGRNAGLREETRAALAGEIAPADLSP 174

Query: 179 HDIQFYYVILLAHENKIR--LLPEIIDDHNVVL 209
             I  Y  +     + IR  ++ E  DD  + L
Sbjct: 175 RSILGYAALRFGRLHAIRIVVMAENADDIRISL 207


>gi|144897198|emb|CAM74062.1| conserved hypothetical protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 217

 Score = 87.3 bits (215), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/216 (22%), Positives = 88/216 (40%), Gaps = 13/216 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMS 59
           M  +   N  ++ L  LLC+R+CHD+  P+GA     EL  +  G + E + ++  S+  
Sbjct: 1   MGSDHQNNTDTLMLAELLCARVCHDLAGPVGATAAGAELFQDLGGGDPETLAMVSTSAAG 60

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRE 114
           A  RL+ +R A G   S+    GL  +  + E  +          +   WT     +   
Sbjct: 61  AAARLRLLRAALGPAASMPQ--GLSALRTMTEAHLNSLASTAAPTIACRWTDCPDQIDGP 118

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           RA++LLNL ++   +LPRGG +  ++ D     I   +     A   +    ++     +
Sbjct: 119 RARLLLNLMLLGRDALPRGGALDFALTDGWPTVIAHGE---PAALADDVRAALLTDTAPT 175

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                  Q     +LA E   R+   +      + +
Sbjct: 176 G--PKTAQATLTRMLAAEMGGRISVSVTARGLRLAA 209


>gi|218660684|ref|ZP_03516614.1| hypothetical protein RetlI_14387 [Rhizobium etli IE4771]
          Length = 76

 Score = 77.3 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP 199
           +++ + +  F+L   G + R P KF +I  G +E  ID+H IQ YY +LLA E  + L  
Sbjct: 1   MENPEFDAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTLDH 60

Query: 200 EIIDDHNVVLSALL 213
               D  +V +A++
Sbjct: 61  SASADE-LVFTAVV 73


>gi|218461320|ref|ZP_03501411.1| hypothetical protein RetlK5_18197 [Rhizobium etli Kim 5]
          Length = 73

 Score = 75.7 bits (185), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           +  F+L   G + R P KF +I  G +E  ID+H IQ YY +LLA E  + L      D 
Sbjct: 4   DAKFTLTAKGKMMRLPPKFVEISTGTIEEAIDAHSIQPYYTVLLAEECGMTLDHSASADE 63

Query: 206 NVVLSALL 213
            +V +A++
Sbjct: 64  -LVFTAVV 70


>gi|73667278|ref|YP_303294.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake]
 gi|72394419|gb|AAZ68696.1| hypothetical protein Ecaj_0664 [Ehrlichia canis str. Jake]
          Length = 210

 Score = 74.6 bits (182), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 91/195 (46%), Gaps = 11/195 (5%)

Query: 16  ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            L+ +R+ HD+   +GAI N +E L D+ G+ +++M L+  ++   + + K ++ A+  +
Sbjct: 11  ELVSARLLHDLAGSVGAIVNYIECLSDDEGLCEDMMSLLSDAANDVMNKFKLLKQAYSIS 70

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130
                    G  +  I++++   K++ + W  +      E      K+L N+ M+    +
Sbjct: 71  DDNG---DFGVTKHNIKNYLKR-KKILLEWDVDVQLFDVELVEKVNKLLTNMVMILMYFM 126

Query: 131 PRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVIL 188
             G KV +++  S +   +  +          +    I+D ++ +  +++ +IQ  ++++
Sbjct: 127 INGSKVKVTLSKSSDGGLLLEIVACAQKIEVHDSIKSILDRDISNRELNTKNIQVNFLMM 186

Query: 189 LAHENKIRLLPEIID 203
           L      ++  E+ +
Sbjct: 187 LLDNYHAKMTYEVQE 201


>gi|148284384|ref|YP_001248474.1| hypothetical protein OTBS_0664 [Orientia tsutsugamushi str.
           Boryong]
 gi|146739823|emb|CAM79730.1| conserved hypothetical [Orientia tsutsugamushi str. Boryong]
          Length = 225

 Score = 73.4 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 86/217 (39%), Gaps = 21/217 (9%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAII 62
           ++++ L   +  +I HD    +GAI N ++   +   +            I++ S + ++
Sbjct: 1   MNNIKLAQFISVKIFHDFAGGLGAISNGIKYCIDNQYQLNNKLYGLAFDTIKIGSTNLLV 60

Query: 63  RLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAV--DKRVQVSWTGE-----KI 109
           +L+  R  +G      S           +I  V++D+     + ++ + +  E       
Sbjct: 61  KLQLYRQMYGSASKSYSDNKLYHEANFDEIRAVLDDYFKALINTKINLVFKDEFFHVKGT 120

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           ++     K+L+ L + A  +L  GG +T+ +   +++   ++   G   +  E+   I+ 
Sbjct: 121 NIDISTGKLLMCLVISAQDALLHGGDITVKIYRKQDKTQINISAKGKSIKNNEEQNFILT 180

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
                +  I   ++  YYV  L       +  +  +D
Sbjct: 181 ATDLSDDNITFFNVHAYYVYYLKKMVNASISCKHGED 217


>gi|269958531|ref|YP_003328318.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel]
 gi|269848360|gb|ACZ49004.1| hypothetical protein ACIS_00360 [Anaplasma centrale str. Israel]
          Length = 217

 Score = 73.0 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 78/194 (40%), Gaps = 11/194 (5%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L +R+ HD+   +GA+ + +E L E    + +++ +  +S   I R + +R A+  +   
Sbjct: 18  LSARLLHDLAGSVGAMVSHVECLVEDPGSESMLRSLEEASEEIIARFRLLRQAYSAS--- 74

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRG 133
           +           IE ++      Q+ W  E      E      ++L +  +++   + RG
Sbjct: 75  EENSSFDKTRNNIEQYLQKKGVAQLFWEVEAQFADAELVERINRLLAHAALLSVMLMIRG 134

Query: 134 GKVTISVQDSKNENI--FSLKINGNLARFPEKFTQIV--DGNVESTIDSHDIQFYYVILL 189
            ++ +SV D+  E      +++  +         +++         +++ ++Q Y++ LL
Sbjct: 135 SEIAVSVVDAAEEGSVQLKVRLKADEVAMHRDIERVLVYKDTDTCQLNTRNVQAYFMSLL 194

Query: 190 AHENKIRLLPEIID 203
                        D
Sbjct: 195 LVRYGATFHYNAYD 208


>gi|189183756|ref|YP_001937541.1| hypothetical protein OTT_0849 [Orientia tsutsugamushi str. Ikeda]
 gi|189180527|dbj|BAG40307.1| hypothetical protein OTT_0849 [Orientia tsutsugamushi str. Ikeda]
          Length = 225

 Score = 73.0 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 86/217 (39%), Gaps = 21/217 (9%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAII 62
           ++++ L   +  +I HD    +GAI N ++   +   +            I++ S + ++
Sbjct: 1   MNNIKLAQFISVKIFHDFAGGLGAISNGIKYCIDNQHQLNNKLYGLAFDTIKIGSTNLLV 60

Query: 63  RLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAV--DKRVQVSWTGE-----KI 109
           +L+  R  +G                  +I  V++D+     + ++ + +  E       
Sbjct: 61  KLQLYRQMYGSASKSYGDNKLYHEANFDEIRAVLDDYFKALINTKINLVFKDEFFHVKDT 120

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           ++     K+L+ L + A  +L  GG +T+ +   ++++  ++   G   +  E+   I+ 
Sbjct: 121 NIDISTGKLLICLVISAQDALLHGGDITVKIYRKQDKSQINILAKGKSIKNNEEQNFILT 180

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
                +  I   ++  YYV  L       +  E  +D
Sbjct: 181 ATDLSDDNITLFNVHAYYVYYLKKMVNASISCEHGED 217


>gi|254440242|ref|ZP_05053736.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307]
 gi|198255688|gb|EDY80002.1| hypothetical protein OA307_5112 [Octadecabacter antarcticus 307]
          Length = 55

 Score = 71.9 bits (175), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 13 DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRL 64
          +L AL+ SRICHD+I+P+GAI N +ELL   G+     M L+  S  +A  ++
Sbjct: 3  NLNALIGSRICHDLINPLGAIGNGIELLGLAGVAVGPEMALVSESVENATAKI 55


>gi|68171194|ref|ZP_00544600.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658030|ref|YP_507163.1| hypothetical protein ECH_0343 [Ehrlichia chaffeensis str. Arkansas]
 gi|67999388|gb|EAM86031.1| hypothetical protein EchaDRAFT_0686 [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599487|gb|ABD44956.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 210

 Score = 71.9 bits (175), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/195 (18%), Positives = 89/195 (45%), Gaps = 11/195 (5%)

Query: 16  ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            L+ +R+ HD+   +GAI N +E L ++  + ++++ L+  ++   + + K ++ A+  +
Sbjct: 11  ELVSARLLHDLAGSVGAIVNYIECLSEDESVSEDMVPLLSDAANDVMNKFKLLKQAYSIS 70

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130
                       E  I++++   K++ + W         E      K+L+N+ M+    +
Sbjct: 71  DDNG---DFNTTEHNIKNYLKR-KKIVLEWDINAQIFDVELVEKINKLLINVTMILMFFM 126

Query: 131 PRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVIL 188
             G KV + +  S N + +  +          E    I+DG++    +++ ++Q  ++++
Sbjct: 127 INGTKVKVVLSKSNNNDFLIEIIAFAQKIEIHESIQSILDGDMFNQELNTKNVQVNFLMM 186

Query: 189 LAHENKIRLLPEIID 203
           L      ++  EI D
Sbjct: 187 LLKSYNAKMTYEIQD 201


>gi|57239385|ref|YP_180521.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579353|ref|YP_197565.1| hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617407|ref|YP_196606.1| hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str.
           Gardel]
 gi|57161464|emb|CAH58389.1| hypothetical protein Erum6570 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417019|emb|CAI28132.1| Hypothetical protein ERGA_CDS_06800 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417979|emb|CAI27183.1| Hypothetical protein ERWE_CDS_06890 [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 212

 Score = 71.1 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 11/181 (6%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            L+ +R+ HD+   +GAI N +E L D+  +   +M L+  +S   + + K ++ A+  +
Sbjct: 11  ELISARLLHDLAGSVGAIVNYIECLGDDESLSGSMMPLLSDASNDVMNKFKLLKQAYSIS 70

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130
                       +  IE+++   K+V + W         E      K+L N+ MV    +
Sbjct: 71  DDNGDFNST---KCNIENYLTR-KKVILEWNVNVQIFDAELIEKINKLLTNMVMVLMLFV 126

Query: 131 PRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQFYYVIL 188
             G +V I +   S    +  +  N  +    E    I++G++ S  + + ++Q  +++L
Sbjct: 127 INGNRVKIMLSSMSDGHLLIEVIANAQIIEMHESIKSILNGDITSVELTTRNVQVSFLML 186

Query: 189 L 189
           L
Sbjct: 187 L 187


>gi|56417056|ref|YP_154130.1| hypothetical protein AM982 [Anaplasma marginale str. St. Maries]
 gi|222475422|ref|YP_002563839.1| hypothetical protein AMF_750 [Anaplasma marginale str. Florida]
 gi|254995235|ref|ZP_05277425.1| hypothetical protein AmarM_04610 [Anaplasma marginale str.
           Mississippi]
 gi|255003410|ref|ZP_05278374.1| hypothetical protein AmarPR_04090 [Anaplasma marginale str. Puerto
           Rico]
 gi|255004530|ref|ZP_05279331.1| hypothetical protein AmarV_04400 [Anaplasma marginale str.
           Virginia]
 gi|56388288|gb|AAV86875.1| hypothetical protein AM982 [Anaplasma marginale str. St. Maries]
 gi|222419560|gb|ACM49583.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
          Length = 217

 Score = 69.5 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 78/197 (39%), Gaps = 17/197 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L +R+ HD+   +GA+ + +E L E    +  ++ +  +S   I R + +R A+      
Sbjct: 18  LSARLLHDLAGSVGAMVSYVECLVEDPESEGTLRSLEEASEEIIARFRLLRQAY---SLS 74

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRG 133
           +        +  I  ++      Q+ W  E      E      ++L ++ +++   + RG
Sbjct: 75  EDNASFDKTQSNIRQYLQKRGVAQLLWEVEAQFADAELVEKVNRLLAHIALLSVMLMVRG 134

Query: 134 GKVTISVQDSKNENIFSLKI--NGNLARFPEKFTQIVDGNVESTIDS-----HDIQFYYV 186
            +V +SV D+  E    L+     +         +++   V   ID+      +IQ Y++
Sbjct: 135 EEVAVSVVDAAEEGSVRLRAKLKADEVAMHRDIERVL---VYRDIDACQLNTRNIQAYFM 191

Query: 187 ILLAHENKIRLLPEIID 203
            LL          +  D
Sbjct: 192 SLLLMRYGATFCYDAYD 208


>gi|88607575|ref|YP_504825.1| hypothetical protein APH_0203 [Anaplasma phagocytophilum HZ]
 gi|88598638|gb|ABD44108.1| hypothetical protein APH_0203 [Anaplasma phagocytophilum HZ]
          Length = 206

 Score = 64.9 bits (157), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 85/203 (41%), Gaps = 3/203 (1%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           +L ++    +++ HD+   +G++ + +E   +    D++   +  +++  I R + +R A
Sbjct: 4   ELASMEAFAAKLLHDVAGSVGSVVSYIECFLDDPESDDIRVCLEEAAVEMISRFRLIRQA 63

Query: 71  FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
           +  +          + IE+ ++        + +        L  +  ++L+   + +  +
Sbjct: 64  YSASEDNSCFDTTREHIEKYLKKRGVPSFSLCIEGQFYDAKLVEQVNRLLVQAALFSAMA 123

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           + RG  + +S+  +++     L ++       +    ++       + +H++Q Y++ LL
Sbjct: 124 MVRGKGMFVSISKTESMVAIRLVLDAEEISVHKDVESVLGNANACALTTHNVQAYFMTLL 183

Query: 190 AHENKIRLLPEIIDDHNVVLSAL 212
             E    L  +  +    V+ AL
Sbjct: 184 CKEYGATLRYDPENALVEVVLAL 206


>gi|254438575|ref|ZP_05052069.1| hypothetical protein OA307_3445 [Octadecabacter antarcticus 307]
 gi|198254021|gb|EDY78335.1| hypothetical protein OA307_3445 [Octadecabacter antarcticus 307]
          Length = 92

 Score = 63.0 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +  L   M    +LP GG + I++  +  +       +  L   P+ +  +  G  +S 
Sbjct: 1   MRTALLSMMCVETALPLGGDIEITLDQNNWQIT---ASHDRLTLDPDLWLPLNKGTYQSD 57

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           + +  + F  +  +AHE    L      D
Sbjct: 58  LSAAQVHFGLLPEMAHEAGRTLTLTHGTD 86


>gi|171913123|ref|ZP_02928593.1| two-component hybrid sensor and regulator [Verrucomicrobium spinosum
            DSM 4136]
          Length = 1236

 Score = 55.7 bits (133), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 22/137 (16%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLK----FMRLAFGYT 74
            I HD+ + +  I  +++LL       E  +L   I  S+      ++    F R      
Sbjct: 875  IAHDLNNVLSPITMAIDLLKMSNDNPESQELYATIADSARRGADMVRQVLSFAR------ 928

Query: 75   GSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMV 125
            G     I +       +IE++  D      RV+     + + L     +  ++LLNL + 
Sbjct: 929  GMEGQRIQIQVKHLIREIEKITRDTFPKSIRVRTKIAPDLLALHGDPTQLHQVLLNLCVN 988

Query: 126  AHASLPRGGKVTISVQD 142
            A  +LP GG +TIS ++
Sbjct: 989  ARDALPDGGDITISARN 1005


>gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1151

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 14/133 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRLAFGYT 74
           I HD+ + +G I  SL++L     + +    + LI+ S+  +   ++    F R   G  
Sbjct: 790 IAHDLNNSLGPILMSLDVLRMKFPDPDSRELLDLIQSSAQRSADMVRQVLSFGRGIEGRK 849

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129
            +V     L +IE+++ D    + +++       WT        +  ++LLNL + A  +
Sbjct: 850 MAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGD--PTQLHQVLLNLCVNARDA 907

Query: 130 LPRGGKVTISVQD 142
           +P+GG ++I+ ++
Sbjct: 908 MPQGGLLSITAEN 920


>gi|254945439|gb|ACT90637.1| AroS [arsenite-oxidising bacterium NT-26]
          Length = 489

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 31/220 (14%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQL-------IRLSSMS 59
            L +L  L S + H+I +P+G + NS++ L + G         + L       IR    +
Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNSIDTLKQHGANEAVRGTSLSLLERGLAGIRDVVQA 319

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
           A+   +  R     +G    L  L D+  +    IA  +R  ++W     DL+       
Sbjct: 320 ALATYRPDR-----SGRALVLRDLEDVRLLAGPQIA-GRRQTLTWMSNPADLTIPTLSGS 373

Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              + LLNL + A A+    G +++  +   + +   L +       P+  T ++     
Sbjct: 374 AVRQALLNLVLNASAAAGDNGAISVETRLQDDGSALILSVTDTGPGLPKAATGVL--TSP 431

Query: 174 STIDSHDIQ----FYYVILLAHENKIRLLPEIIDDHNVVL 209
               +  +      + V  +  E    +     +   + +
Sbjct: 432 EPWPAAQLAGGLGLWMVRKMVDEAGGHISLGRREAEGLTI 471


>gi|196228679|ref|ZP_03127545.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226960|gb|EDY21464.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 916

 Score = 52.6 bits (125), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 14/133 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK----FMRLAFGYT 74
           I HD+ + +  I  S++LL     +    EV++ +  S+      ++    F R   G  
Sbjct: 555 IAHDLNNVLSPIVMSVDLLKMKTDDPACLEVLETVETSARRGADMVQQVLSFARGVEGQR 614

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129
             V     L ++++++ D    +  +++S     W         +  ++LLNL + A  +
Sbjct: 615 IIVQPKHLLKEVQKIVADAFPKNIELKLSQKPDLWNVLGD--PTQLHQVLLNLCVNARDA 672

Query: 130 LPRGGKVTISVQD 142
           +P GG++TI+ ++
Sbjct: 673 MPEGGRITIAAEN 685


>gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 1544

 Score = 52.2 bits (124), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 17   LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFMRLAFGY 73
            LL S I HD+ + +  I  S+ELL E+  ++E    +Q I  S+  A   ++ + LAF  
Sbjct: 1177 LLASGIAHDMNNILTPIMMSMELLKEIVDDEEGFERIQTINKSTRRAKNLIQQL-LAF-A 1234

Query: 74   TGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFM 124
             G  +  I +       ++   +++      ++ V+       +     +  ++L+NL +
Sbjct: 1235 RGKSEQQIPVNLRRLILELTNFMKETFPRSIQLSVNIPKNLPFILGDPTQIHQVLMNLCV 1294

Query: 125  VAHASLPRGGKVTISVQ 141
             AH ++P GG+++IS +
Sbjct: 1295 NAHDAMPDGGQLSISSE 1311


>gi|148658128|ref|YP_001278333.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148570238|gb|ABQ92383.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1039

 Score = 51.4 bits (122), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 20/179 (11%)

Query: 22  ICHDIISPIGAIHNSLEL-LDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           I HD  + +  I  S +L L  +  +      +Q I+  +  A   ++ + LAF      
Sbjct: 676 IAHDFNNILTVISGSADLALAMMPPDSPAYADVQTIQQGARRAANLVRQL-LAF--ARRQ 732

Query: 78  DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-----SRERAKILLNLFMVAH 127
                  D  +VIE  + + +R     ++  W              +  ++++NL + A 
Sbjct: 733 PGHPQTVDANEVIEGMLPLVRRLIGEDIRFVWAPAPYPCVIIIDPHQFEQVVMNLIVNAR 792

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ++P GG +TI+   ++                     +     +++ + +H  + Y+ 
Sbjct: 793 DAMPDGGALTITTSVTEMAAGDEDSAETPFVCI---TVEDTGVGMDAEVMAHIFEPYFT 848


>gi|302036482|ref|YP_003796804.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604546|emb|CBK40878.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 645

 Score = 51.4 bits (122), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 75/209 (35%), Gaps = 17/209 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMR 68
           L AL      HD+ +P+G I +S    LE   E  I  E+ + I        +RL  F+R
Sbjct: 435 LAALA-----HDLRNPLGVIRSSAQVVLEGPQEEPIRQEMARYIIDEVDKLSLRLHDFLR 489

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWT----GEKIDLSRERAK-ILLN 121
            A      + +      +   +  + A     R+++          I +  E+ K  L+N
Sbjct: 490 YARQKPPDLKAEPAEAVVRAALRQWEAQGGHERIRIEQQFGNALPSIQVDPEQVKEALMN 549

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
           L + A  ++P GG +T++ +      +     +      PE  ++I +    +      +
Sbjct: 550 LLINAREAMPEGGTLTLTTRAGPGNKVEIEVADTGSGIAPEHLSRIFEPFFTTKAYGTGL 609

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               V  L  +N   L            S
Sbjct: 610 GLTNVKRLVEDNGGTLAVTSSQGMGTTFS 638


>gi|253698921|ref|YP_003020110.1| histidine kinase [Geobacter sp. M21]
 gi|251773771|gb|ACT16352.1| histidine kinase [Geobacter sp. M21]
          Length = 517

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 25/225 (11%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           +  L ++  + + I H+I +P+  I  ++ +L D+   +D  +Q+I              
Sbjct: 276 ADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPDDGRVQIIGEVLEQVSRLDKTV 335

Query: 64  --LKFMRLAFGYTGSVDSL-IGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-S 112
             L F    FG     +     +    + I            +DKR++++     + +  
Sbjct: 336 NDLLF----FGKPTVAEPTCTDINAALKKILIFASQHRGGKNIDKRLELAENLPTVYVDP 391

Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ-IVD 169
           ++  ++ LNLF+ A  ++  GG +T+   +   +  ++  +++       P +  + I  
Sbjct: 392 KQIQQVFLNLFLNAVQAMQAGGTLTVRSGLAKVEGIDMVQVRVTDTGQGIPPQILEKIFT 451

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       L  ++  RL     D      +  L 
Sbjct: 452 PFFTTKAQGTGLGLAISHRLVEQHGGRLSVVSQDGMGTTFTVELP 496


>gi|320104022|ref|YP_004179613.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319751304|gb|ADV63064.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 482

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 70/174 (40%), Gaps = 11/174 (6%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK----FMRL 69
           LL + I H++ +P+ AI + +++L    +     E + LI    +     L+    F R 
Sbjct: 233 LLAAGIAHEVGNPLTAISSLIQMLRRKHDDPATAEKLDLIGNQVIRIQTILRELVGFSRP 292

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRER-AKILLNLFMV 125
           A      V     + D   + + +     R+    +     ++   +++  +++LNL M 
Sbjct: 293 ASTLETPVQLREVVADALSIAKYYHQFKNRIIETDLPDDLPRVRAVKDKLVQVVLNLTMN 352

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           A  +  +GG++  S +     +    + +G + R  +    +    +    ++H
Sbjct: 353 ALDATGKGGRILWSARVVAEGDATGSQASGLVLRVDDDGPGVPQAEIPLLFEAH 406


>gi|149200167|ref|ZP_01877190.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155]
 gi|149136704|gb|EDM25134.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155]
          Length = 385

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 85/223 (38%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIR 63
             + L+ +L + + H++ +P+ +++  L+LL+      E    DE  +L+ ++S      
Sbjct: 145 EQLRLLTMLAAGVAHELGNPLNSLNIHLQLLNRLMKQIEGDEGDEARELLGVASGEIERL 204

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEK--IDLSRER 115
              +R   G   S    +   ++  ++ + +    +      +++  +  +    +  + 
Sbjct: 205 DTIIRQFLGALRSDKPEMKAIELTSILREALQFMTKEIEDRNIELEISIPERTPPIEGDE 264

Query: 116 AKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            ++     N+   A  ++P+GGK+ +      +    S    G       K  +I +   
Sbjct: 265 TQLKQAFFNIMKNAIQAMPQGGKLALLCTGDDDFINISFADTGGGIDLN-KIGKIFNSYK 323

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +  + V  +  E+  RL     ++   +L+  L +
Sbjct: 324 SDRHSGTGLGIFIVEKIIREHGGRLDISSAEEKGTILTISLPR 366


>gi|91202503|emb|CAJ72142.1| similar to two component histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 366

 Score = 50.7 bits (120), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 24/180 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSM 58
           L S  L +L  L S + H+I +P+ A++  L LL        D        +  I     
Sbjct: 137 LKSKTLSSLGTLASELAHEIKNPLNAMNLQLLLLKHEINDSYDNGNSPKNELLKIVTIVQ 196

Query: 59  SAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGE 107
           + I RL  F+     +  +         I +++ D IA          +  ++ V     
Sbjct: 197 NEINRLSSFVEECLQFAKTGKLSRSYASIREMLTDIIALLTPQAQLNGIQLKLDVMENIP 256

Query: 108 KIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              + +++ K  +LN+ + +  ++P GG++ +S    K+E + + +  G     PE+F +
Sbjct: 257 APYIDKDKIKQAILNILINSIEAMPDGGELHVSASGVKDEIVIACQDTGPG--IPEEFRE 314


>gi|197116682|ref|YP_002137109.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086042|gb|ACH37313.1| sensor histidine kinase, HAMP domain-containing, nonconserved
           putative heme-binding site [Geobacter bemidjiensis Bem]
          Length = 494

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 82/225 (36%), Gaps = 25/225 (11%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           +  L ++  + + I H+I +P+  I  ++ +L D+   ED  +Q+I              
Sbjct: 253 ADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRIQIIGEVLEQISRLDKTV 312

Query: 64  --LKFMRLAFGYTGSVDSL-IGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-S 112
             L F    FG     +     +    + I            ++KR+++S     + +  
Sbjct: 313 NDLLF----FGKPTVAEPTCTDINSALKKILVFASQHRGGKNIEKRLELSENLPTVYVDP 368

Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ-IVD 169
           ++  ++ LNLF+ A  ++  GG +T+   +   +  ++  +++       P +  + I  
Sbjct: 369 KQIQQVFLNLFLNAVQAMQAGGTLTVKSGLAKVEGVDMVQVRVTDTGQGIPPQILEKIFT 428

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       L  ++  RL     D      +  L 
Sbjct: 429 PFFTTKAQGTGLGLAISHRLIEQHGGRLSVVSQDGMGTTFTVELP 473


>gi|85705605|ref|ZP_01036703.1| sensor histidine kinase [Roseovarius sp. 217]
 gi|85670030|gb|EAQ24893.1| sensor histidine kinase [Roseovarius sp. 217]
          Length = 445

 Score = 50.3 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 17/157 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           +  L AL      HD+ SP+ A+   +E+LDE      +  L+          L+F R  
Sbjct: 242 THMLAAL-----SHDLRSPLTAMRLRIEMLDETEDSVRLKALVEEMQAMVEATLEFAR-- 294

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
            G   +  + +   D+  ++ D +      R  ++ +       R  A  + L NL    
Sbjct: 295 -GVAKAEPASV--VDLAALLGDLVCDVGGDRATLAQSPPLPVAVRAHALNRALRNLI--- 348

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             ++  GG+ T+++  +    + ++   G      + 
Sbjct: 349 DNAVRYGGEATVTLTQAPGMAVINIADKGPGLPADQL 385


>gi|312112936|ref|YP_004010532.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311218065|gb|ADP69433.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 952

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/219 (21%), Positives = 76/219 (34%), Gaps = 28/219 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSA-IIRLKFMRL-AFGYTGSVD 78
           I HD  + +  I  + ELL      DE +  LI  +  SA   R+   RL AF     +D
Sbjct: 593 IAHDFNNLLTPIMGAFELLQRRIAPDERLHALISNAMQSAESARVLVQRLLAFARRQHLD 652

Query: 79  SL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAK------ILLNLFMVAHASL 130
           +  + L  +   + D IA     ++    E  D L R R         LLNL +    ++
Sbjct: 653 TRAVDLKGLILGLHDLIARALGSRIDVRVEIPDGLPRARVDPSQFEVALLNLAVNGGDAM 712

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY----- 185
           P GG +TIS      E   +  +          F     G     + +  ++ +Y     
Sbjct: 713 PDGGTITISASAETIEEGTASDLA-PGRYIALAFEDTGIGMTREML-ARAVEPFYSTKGI 770

Query: 186 ---VIL-------LAHENKIRLLPEIIDDHNVVLSALLE 214
                L       LA ++  +L  E         +  L 
Sbjct: 771 GKGTGLGLSMIHGLAAQSGGKLDLESEPGRGTRATLWLP 809


>gi|255261921|ref|ZP_05341263.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domain [Thalassiobium sp. R2A62]
 gi|255104256|gb|EET46930.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domain [Thalassiobium sp. R2A62]
          Length = 777

 Score = 49.5 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 24/136 (17%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  I  ++ELL+++    E ++LI   +  A  R        L F R A     
Sbjct: 396 HDFNNLLSVILGNMELLEDLTEGSEKLELIEE-AKQASFRGAALTRSMLNFARRA----D 450

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
                I LG+    +E +++    V +          W+        E A  LLNL + A
Sbjct: 451 LNPQEISLGEFVGRMETWMSRTIPVTIKVETSFSPDVWSITADVSGVESA--LLNLVINA 508

Query: 127 HASLPRGGKVTISVQD 142
             ++P GG + I  ++
Sbjct: 509 RDAMPDGGCLRIETEN 524


>gi|254444887|ref|ZP_05058363.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259195|gb|EDY83503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 895

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 69/191 (36%), Gaps = 22/191 (11%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDF--I 94
           ELLD   ++   M+L+RL        L  +RL  G      + + L   +E +   F  +
Sbjct: 256 ELLDI--MQQNAMRLMRL----INDLLNLVRLDSGTLQLRPATLELRHYLEGICRSFYPM 309

Query: 95  AVDKRVQVSWTGEKIDLS-----RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           A ++R+  +W  E          R++  KILLNL   A    P GGK+ +  +       
Sbjct: 310 ASERRLDFTWEIEDGGQPNVNLDRDKVEKILLNLLFNAIKFTPPGGKIILRARRDGEFLR 369

Query: 149 FSLKINGNLARFPEK------FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202
             ++ +G      E       F Q  + +         I    V  LA  +   +    +
Sbjct: 370 IEVEDSGQGIAAEELASIFDRFWQA-ETSSNRRYQGVGIGLALVRDLARLHGGDVEASSV 428

Query: 203 DDHNVVLSALL 213
                V+   L
Sbjct: 429 QGEGTVMRVSL 439


>gi|118581752|ref|YP_903002.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
 gi|118504462|gb|ABL00945.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
          Length = 480

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 21/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I H+I +P+  I  +++ L E       G +   M+ +       + R  +M + F
Sbjct: 252 LASGIAHEIRNPLNYISLAIDHLKEEMLPHCAGAQRAEMEELADKIKEEVRRANYMVVNF 311

Query: 72  GYTGS----VDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDLS----RERAK-I 118
              G       +L+   D+      V+ D +  ++R+++              +E  +  
Sbjct: 312 MSYGRPLKLRHALVPYSDVLAKALPVLHDRLT-EQRIRLEQRIPDDFPPLWVDQEMLRTC 370

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +LNL   A  ++P GG +T+  +   ++   +    G   R  E   +I      +    
Sbjct: 371 ILNLVGNAVQAMPGGGLITLGAERDHDQVRLTFSDQGKGIR-AEDLGKIFQPYFTTREVG 429

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +  E+   +  +         + LL 
Sbjct: 430 IGLGLAITERIVREHGGSIQVDSTLGSGTTFTLLLP 465


>gi|315185889|gb|EFU19654.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 616

 Score = 49.1 bits (116), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 76/210 (36%), Gaps = 26/210 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-----RLAFGYTGSVD 78
           H+I +P+G I   +E+L    +  E+ + +     + I R++       RLA   +    
Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEK-IQNEITRIQNFVSSLGRLA-DASRMER 453

Query: 79  SLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKID--LSRERAKI---LLNLFMVAHASL 130
             + L ++ +   ++   +  +KR+ V     +    +  +  ++   L+NL + +  +L
Sbjct: 454 GTVDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVRIEGDAGRLKQLLINLVLNSVEAL 513

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQFY 184
             GG + I ++  + + + S+  NG+        R    F     G   + +        
Sbjct: 514 LHGGWIRIRLERKEGKILLSVSDNGHGIPKEIQDRIFRPFFSTKAGKQSTGLG-----LA 568

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +A  +   +            +    
Sbjct: 569 ICEHIAKLHGGEIGFTSTPGEITTFTVTFP 598


>gi|307293763|ref|ZP_07573607.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
 gi|306879914|gb|EFN11131.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobium chlorophenolicum L-1]
          Length = 451

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 15/200 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           HD+ +P+ ++    E +++ G    + + I   +      L   R   G +      + L
Sbjct: 257 HDLRTPLASLRVRAESVEDEGERARMSETIDEMNRMLEDILSLARA--GRSTEAQQKVDL 314

Query: 84  GD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISV 140
               + V+EDF+ +   V ++ +   +   R +   + L NL      ++  G +  +SV
Sbjct: 315 SALADAVVEDFLELGSPVDLADSERVVANVRPQQIRRALRNLI---ENAIVYGERAHVSV 371

Query: 141 QDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194
           +  +      +  +G            E FT++       T     +    V  +  E+ 
Sbjct: 372 ERGEGAIRLVVADDGPGISEDRMEEMMEPFTRLEGSRNRET-GGAGLGLALVRAIMAEHG 430

Query: 195 IRLLPEIIDDHNVVLSALLE 214
             L         +  S +L 
Sbjct: 431 GALKLANRPQGGLEASLVLP 450


>gi|116622221|ref|YP_824377.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225383|gb|ABJ84092.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 229

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 63/156 (40%), Gaps = 12/156 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYTGSVDSLIG 82
           HD+ +P+ AIH   E+L    +    +  I  +   A IR++  + L    +      + 
Sbjct: 18  HDLRNPLSAIHGGAEILVRSNLSQPQVHRIARNMCCAAIRIRELLELCLDRSRCRTKKVE 77

Query: 83  LGDIEQVIEDFI------AVDKRVQVSWTGE---KIDLSRERA-KILLNLFMVAHASLPR 132
           + D+  V+   +      A  + VQ+        +I +   R  + L+NL + A   +P+
Sbjct: 78  IADLRAVVAAAVDRIAVSAEFQAVQIVQAIPERLRIAMDLNRIHRALVNLLVNALEVMPQ 137

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           GG + +S        +  ++  G     PE   ++ 
Sbjct: 138 GGTIHVSAIPEGRSVLIRVRDTGPGI-APEIRDRLF 172


>gi|196232631|ref|ZP_03131483.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196223393|gb|EDY17911.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 597

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 14/174 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAF 71
           L S I HD+ + +  I  SL+LL  +      E++  +   +  A   +K    F R   
Sbjct: 213 LASGIAHDLNNMLSPILLSLDLLRNEVPEKSRELLSTVERCAQRAGEMVKQVLTFARGVE 272

Query: 72  GYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           G    +   + + +IE ++       I +++R+    +  + D ++   ++LLNL + A 
Sbjct: 273 GERLPLQPKLLIREIENIVAGSFPRHITMERRIPRELSLIQGDPTQLH-QVLLNLCVNAR 331

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
            ++P GG + I   D   +  F+    G       ++ ++   +  + I +H I
Sbjct: 332 DAMPDGGTLRIEADDFAVDAHFASMTPGARI---GRYVRLRVSDTGTGIPAHLI 382


>gi|167628799|ref|YP_001679298.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167591539|gb|ABZ83287.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 466

 Score = 48.7 bits (115), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 18/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSMS 59
               + +L  + + + H++ +P+GAI   L+L+         +          +R S   
Sbjct: 239 EQARMASLGQVATWVAHEVRNPLGAIKGLLQLIQETIEERDPDGQSRRYCETAVRESERL 298

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  L + RL             + +I  ++E  +A      V+       + R   
Sbjct: 299 ERFVGDLLAYSRLPQPTITEWPLANLVQEITALLEPELARQDAAIVTQIEPPGLIVRADR 358

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDGN 171
               ++LLNL   A A++P GG + +    S  E   S+ +       P     ++ +  
Sbjct: 359 EQMHRLLLNLIQNALAAMPSGGDIHLRALSSPTEEGLSIIVEDEGIGLPPGAEHRLFEPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +       +A+ +   +  E            L +
Sbjct: 419 FTTREKGSGLGLAICRDIANRHGGTIRAEGAPGGGARFIVNLPE 462


>gi|300691960|ref|YP_003752955.1| sensor protein, histidine kinase transcription regulator [Ralstonia
           solanacearum PSI07]
 gi|299079020|emb|CBJ51682.2| Putative sensor protein, histidine kinase transcription regulator
           [Ralstonia solanacearum PSI07]
          Length = 784

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMR-----L 69
           I HD+ SP  AI   +EL  + G   +   L+     LSS +   A   +   R     L
Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALDHEALLARIRQLSSRTLELADAFIDLARMESQEL 626

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V  ++   D    + +   ++ RV            R   + L+NL   A   
Sbjct: 627 KLTEVDLVGLVLDAADEVWALANHHQIEVRVDADIEASVRGEPRMLVRALVNLVNNAIKF 686

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
            PRG  VT++V++  +    S+   G      + A+  + F ++ +  V        +  
Sbjct: 687 SPRGTTVTVAVREEADAFAVSVADQGVGMAAEDQAQLFQPFRRLHE-AVADAPSGSGLGL 745

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+  +    H    +  L +
Sbjct: 746 VFVKTVVERHGGRIAVQSAPGHGATFTLWLPR 777


>gi|254465743|ref|ZP_05079154.1| sensor histidine kinase [Rhodobacterales bacterium Y4I]
 gi|206686651|gb|EDZ47133.1| sensor histidine kinase [Rhodobacterales bacterium Y4I]
          Length = 339

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 22/211 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ A+  +L LL+      + ++++   R S           L F R   G    
Sbjct: 131 HDLRNPLSAVGAALRLLENEPQSAKALEILALGRQSVTRMSSLINDILDFARARLGNGVE 190

Query: 77  VDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +D      D+  V+   +          + R + S+           A+++ NL   A  
Sbjct: 191 IDHAEKT-DLRPVLSQTVEEIRLANPGTELREEYSFQDPLGCDPERMAQLVSNLLSNAVT 249

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVI 187
               G  VT++ +D   + I S+  +G  A  P E   ++ +    + + +        +
Sbjct: 250 HGTPGKPVTVTARDDGGDFILSVTNSG--APIPAETMGRLFEPFTRAEMRASQNGLGLGL 307

Query: 188 LLAHE---NKIRLLPEIIDDHNVVLSALLEK 215
            +A +       LL    D+   V +  + +
Sbjct: 308 FIAQQIAKGHGGLLTAQSDEQTTVFTLRMPR 338


>gi|253701288|ref|YP_003022477.1| histidine kinase [Geobacter sp. M21]
 gi|251776138|gb|ACT18719.1| histidine kinase [Geobacter sp. M21]
          Length = 490

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 23/216 (10%)

Query: 17  LLCSRICHDIISPIGAIH--NSL---ELLDEVGIEDEVMQLIRLSSMS---AIIRLKFMR 68
           LL + + H+I +P+ AI   + +   EL  +    D + ++   S          L + R
Sbjct: 273 LLAAGMAHEIGTPLAAIMGYSGILSEELAGDPEKSDYLRRITEESKRIDRIVRGLLDYAR 332

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERA------KILL 120
                 GS    I +  + + + + +     +++       +  L R  A      ++L+
Sbjct: 333 ----PKGSQREEIEVLPLLEKVVELLEAQGALKLLEVTVEAEPSLPRLHADPYQLEQLLI 388

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDS 178
           NL M A  ++PRGGK+ +            +   G     PE    + D     +     
Sbjct: 389 NLIMNAKDAMPRGGKLQLKGLSVGGGVAIEVADTGEGM-PPEHLPLVFDPFFTTKEPGKG 447

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A      L  +            L 
Sbjct: 448 TGLGLAIAARIAESCGGSLTVQSELGEGSRFRLTLP 483


>gi|307718036|ref|YP_003873568.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Spirochaeta thermophila DSM 6192]
 gi|306531761|gb|ADN01295.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Spirochaeta thermophila DSM 6192]
          Length = 616

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 76/210 (36%), Gaps = 26/210 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-----RLAFGYTGSVD 78
           H+I +P+G I   +E+L    +  E+ + +     + I R++       RLA   +    
Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEK-IQNEITRIQNFVSSLGRLA-DASRMEW 453

Query: 79  SLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKID--LSRERAKI---LLNLFMVAHASL 130
             + L ++ +   ++   +  +KR+ V     +    +  +  ++   L+NL + +  +L
Sbjct: 454 GTVDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVKIEGDAGRLKQLLINLVLNSVEAL 513

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQFY 184
             GG + I ++  + + + S+  NG+        R    F     G   + +        
Sbjct: 514 LHGGWIRIRLERKEGKIVLSVSDNGHGIPKEIQDRIFRPFFSTKAGKQSTGLG-----LA 568

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +A  +   +            +    
Sbjct: 569 ICEHIAKLHGGEIGFTSTPGEITTFTVTFP 598


>gi|322420752|ref|YP_004199975.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127139|gb|ADW14699.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 672

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 28/172 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVG----IEDEVMQLIR--LSSMSAIIR--------LKF--- 66
           H++ +P+  I  ++++L        I+ E+M+ I    S  SA IR        ++F   
Sbjct: 446 HELNNPLAGILGAIQMLRGSALAHPIDPELMEGIDVLESIESAAIRCQKIVEDLVRFTTQ 505

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL---LNLF 123
            R  F        L    +I  +   F     +V++    E   +  +  K+L   +NL 
Sbjct: 506 ARCNFSEMDINQVLKDTMEI--MAGPFGEQKIKVKLHLDPEVPQIDGDFVKLLEVYVNLL 563

Query: 124 MVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDG 170
             A ++LP GG++ IS         + +    ++ NG     P+   +I D 
Sbjct: 564 QNAKSALPNGGRIDISTSLVKKYGEQLQVAVVIRDNGCGI-PPQNLAKIFDP 614


>gi|78222275|ref|YP_384022.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193530|gb|ABB31297.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 673

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 29/228 (12%)

Query: 9   LSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI- 61
           + +  L    +L + + H+I +P+  I  + ELL     ED    E +  I   +     
Sbjct: 438 VRAAKLADIGMLAAGVAHEINNPLAIIRGNTELLQMAIPEDDPSREEVDTIAQQTGRVER 497

Query: 62  ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEK 108
                LKF R            +G  ++ +++++ +              R   +     
Sbjct: 498 IVGSLLKFAR-------QQKKELGTVEVNRLLDEILKQVGHQIPLAGIDIRRDYAADIPL 550

Query: 109 IDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQ 166
           ++   ++ + +  NL + A  ++  GG +T+           ++ +    A   PE    
Sbjct: 551 LEGDGDQLRQVFTNLILNAIQAMKEGGTLTVGTSRDSEAGTCTVAVEDTGAGIPPENLRN 610

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +  D   +       +  ++   +  E           +L 
Sbjct: 611 IFSPFFTTRNDGTGLGLAVSYGIVRDHGGNIQVESTAGTGSTFRVVLP 658


>gi|299067043|emb|CBJ38238.1| Putative sensor protein, histidine kinase transcription regulator
           [Ralstonia solanacearum CMR15]
          Length = 784

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 77/212 (36%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMR-----L 69
           I HD+ SP  AI   +EL  + G   +   L+     LSS +   A   +   R     L
Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALDHAALLARIQQLSSRTLELADAFIDLARVESQEL 626

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V  ++   D    + +   ++ RV            R   + L+NL   A   
Sbjct: 627 KLTDVDLVGLVLDAADEVWALANHHQIEVRVDAEIEASVRGEPRMLVRALVNLVNNAIKF 686

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
            PRG  VT++V++  +    S+   G      + A+  + F ++ +  +        +  
Sbjct: 687 SPRGSTVTVAVREDADSFAVSVADQGVGIEAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 745

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+  + +  H    +  L +
Sbjct: 746 VFVKTVVERHGGRIAVQSVPGHGATFTMWLPR 777


>gi|153003895|ref|YP_001378220.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152027468|gb|ABS25236.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 322

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISV 140
           + D   V+    A + RV++ W G+    +      + L+NL   A  + PRGG+V + V
Sbjct: 180 VADALAVLSAR-ADEARVRLVWRGDATVEADPLRLEEALVNLVANAIEATPRGGEVVVEV 238

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE 200
               +    +++  G   R PE   ++      +  D   +          E+   L  E
Sbjct: 239 LQQGDSAEIAVRDTGRGMR-PETLRRVGTPFFTTREDGTGLGVALARSAFAEHGGSLRYE 297

Query: 201 IIDDHNVVLSALLE 214
                   + A L 
Sbjct: 298 SAPGKGTTVRATLP 311


>gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 891

 Score = 48.4 bits (114), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/194 (18%), Positives = 79/194 (40%), Gaps = 38/194 (19%)

Query: 22  ICHDIISPIGAIHNSLEL--LDEVGIED-EVMQLIRLSSMSAIIRLK----FMRLAFGYT 74
           I HD+ + +G I  +++L  L     +D E+++ + +S+      +K    F R   G  
Sbjct: 529 IAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETVSVSARRGADMVKQVLSFARGLEGQR 588

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129
             V  +  L +++++  D       V ++     W+        +  ++LLNL + A  +
Sbjct: 589 TLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGD--PTQLHQVLLNLCVNARDA 646

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           +P+GG++T+               N    R  + F  +     E+    H +      L 
Sbjct: 647 MPQGGRLTL---------------NACNQRIDDHFAAMH---PEARPGPHVV------LE 682

Query: 190 AHENKIRLLPEIID 203
             ++   + P++I+
Sbjct: 683 VADSGTGMTPDVIE 696


>gi|116251644|ref|YP_767482.1| nitrogen fixation two component sensor/regulator fusion
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256292|emb|CAK07373.1| putative nitrogen fixation two component sensor/regulator fusion
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 639

 Score = 48.0 bits (113), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 10/139 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--SSMSAIIRLKFMRLAFG-----YT 74
           + HD  + +  I  +LE+L+    E   + L+R   S+     RL    LAFG       
Sbjct: 273 LAHDFNNLLAVIIGNLEMLEARLAEPGQLSLLREAQSAADDGARLTSQLLAFGRRQALAP 332

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
             +D    LG+   +++  +     ++    G ++    ++A++   LLNL + A  ++P
Sbjct: 333 TVLDVGALLGEFSDLVQRTLGDSVELRTIIPGRRLSAMADKAQLQSALLNLSINARDAMP 392

Query: 132 RGGKVTISVQDSKNENIFS 150
            GG++TI +   + +  + 
Sbjct: 393 AGGRLTIEISGVEIDADYV 411


>gi|153006251|ref|YP_001380576.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152029824|gb|ABS27592.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 573

 Score = 48.0 bits (113), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIRLSSMSAIIRL-KFM 67
           +  R+ H+I +P+  I  S+E L +             DE  + I          + +F 
Sbjct: 360 VARRLAHEIKNPLTPIAMSVETLRDAHARARPDFGEIFDEGTRAIGEEVRRLKRIVDEFS 419

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERA-KILLNL 122
           R A         +     ++ V+  F +    V    +V      +   R++  ++LLNL
Sbjct: 420 RFARLPAPERTPVAPDELVQSVLALFPSAPAGVVVAREVEAGLPAVLADRDQVVQVLLNL 479

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A  ++P GG + ++ +   +   FS+   G   R PE   ++ +    +      + 
Sbjct: 480 VRNALDAMPGGGTLRVAARGEGSAVAFSVSDTGPGVR-PEDRPRVFEPYFTTKEGGTGLG 538

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +A E+   L            +  L 
Sbjct: 539 LAIAQRIAEEHGGTLELRSAPGEGATFTLTLP 570


>gi|260576026|ref|ZP_05844020.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259021725|gb|EEW25027.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 461

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 17/157 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           +  L AL      HD+ SP+ A+   +E+LDE    + +  L+          L+F R  
Sbjct: 258 THMLAAL-----SHDLRSPLTAMRLRIEMLDETEDSERLKALVEEMQAMVEATLEFAR-- 310

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
            G   +  +     D+  ++ D +     +R  ++ +       R  A  + L NL    
Sbjct: 311 -GVARAEPAAE--VDLAVLLADLVNDVGGERANLAPSSPLPITVRPHALNRALRNLI--- 364

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             ++  GG   + +  +    I ++   G      + 
Sbjct: 365 DNAVRYGGVAMVKLDRTPGLAIITIADKGQGLPEDQL 401


>gi|87199632|ref|YP_496889.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135313|gb|ABD26055.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 608

 Score = 48.0 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 25/218 (11%)

Query: 18  LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLS-------SMSAIIRLKF 66
           + + + H++  P+ AI N    S  LL + G  ++ ++++R +       ++ A   ++ 
Sbjct: 386 MATALAHELNQPLTAIANYVLTSATLLADPG--EDTIEIVREALEEAGQEAVRAGAIVQR 443

Query: 67  MRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKID----LSRERAK- 117
           +R AF   G +D  I    I       +       + V V     +      + + + + 
Sbjct: 444 LR-AFVSRGELDRTIESPAILAAETLALSGLAGRRRHVSVEVAVPRTLGEVLVDKIQIQQ 502

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +LLNL   A  +L   G++ +  ++ +     F+++ +G     PE    + +  V +  
Sbjct: 503 VLLNLVRNAFEALEGQGQIRVGAREIAGGMLQFTIEDDGPGI-DPEHQADLFEPFVSTKE 561

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I       +   +  +L  E+ +D        + 
Sbjct: 562 NGMGIGLAICRTIVESHGGKLWHEMRNDGGTAFHFTIP 599


>gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 642

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 22/170 (12%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAI----IRL 64
           + +A+L     H++ +P+  I   +ELL    D+  +  E ++++   S   +      L
Sbjct: 407 EFLAMLA----HELRNPLAPIRTGIELLRIAADDPEVLQETIEVMDQQSRQLVTLVDDLL 462

Query: 65  KFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEKIDL-----SRERA 116
              R+A G       LI L D+          +  D   +         L     SR   
Sbjct: 463 DVSRIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELPDCPLQVQGDSRRLV 522

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +++ NL   A    PRGG+V + VQ   N    +++  G     PE   +
Sbjct: 523 QVVSNLLNNAAKYTPRGGRVDLIVQPEPNRIGIAIRDTGIG--IPEHMRE 570


>gi|220909779|ref|YP_002485090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866390|gb|ACL46729.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 654

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 72/182 (39%), Gaps = 35/182 (19%)

Query: 18  LCSRICHD---IISPI-GAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKFMRL 69
           L S I HD   +++PI  A    L LL    +EDE    +++LI  S+      +K + L
Sbjct: 289 LSSGIAHDFNNLLTPILSATQ--LMLLQLPDLEDEYAQELLKLIESSARRGGDLVKQI-L 345

Query: 70  AFGYTGSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KIL 119
           AF   G    L+ L       ++ QV          ++++     + L         ++L
Sbjct: 346 AF-ARGVEGKLVPLQVKHLLAEMAQVARQTFPKSISIRLNLATADLYLVAADTTQLHQVL 404

Query: 120 LNLFMVAHASLPRGGKVTISVQ-------------DSKNENIFSLKINGNLARFPEKFTQ 166
           +NL + A  ++P GG +TIS +             +++      L +       P +  +
Sbjct: 405 MNLCVNARDAMPEGGILTISAENKLLDEAYTRIHREAQTGPYVVLTVADTGVGIPPELLE 464

Query: 167 IV 168
            +
Sbjct: 465 HI 466


>gi|39996594|ref|NP_952545.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39983475|gb|AAR34868.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|307634854|gb|ADI84333.2| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 550

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 25/228 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-- 65
            S  L A+  L +RI H+I +P+ AI  S +L+ + G   +  + +    +    RL   
Sbjct: 318 KSDRLAAIGELSARIAHEIRNPLAAISGSTQLIAQGGAVSDPDRRLFDIVLRETDRLNGL 377

Query: 66  ---FMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRE 114
              F  LA+      +   +    +   +   +  D+R +       V  T   +    +
Sbjct: 378 ISDF--LAYARPNQPEPRPVDFHSLVAELAALVTSDERFEGVVIDNRVDSTFRPLLDPDQ 435

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFPEK-FTQ 166
             ++L NL   A  ++P GG +T+    S            + + +        E    +
Sbjct: 436 FRQVLWNLMGNAAGAMPDGGTITVEAGQSDEIRGGGQRRITYRISVADTGLGMDEATVAR 495

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      +    V  +   +  R+  E       +    L 
Sbjct: 496 IFEPFFTTKSTGTGLGLATVHRIVEAHGGRIAVESTPGKGTMFVIFLP 543


>gi|39995881|ref|NP_951832.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982645|gb|AAR34105.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|298504895|gb|ADI83618.1| sensor histidine kinase, HAMP domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 674

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 29/228 (12%)

Query: 9   LSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAI- 61
           + +  L    +L + + H+I +P+  I  + ELL     +     E +  I         
Sbjct: 439 VRAAKLADIGMLAAGVAHEINNPMAIIRGNAELLQMALPDEDPNREEVDTIAQQVGRVER 498

Query: 62  ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEK 108
                LKF R            +G   +  +++D +              R   +     
Sbjct: 499 IIGSLLKFAR-------QQQRRLGTVSLPPLLDDILKQMGHQVPLTRIEIRKAYAVDLPP 551

Query: 109 IDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQ 166
           +    ++ + +  NL + A  ++P GG +T++    +     ++ ++       PE   +
Sbjct: 552 LAGDPDQLRQVFTNLVLNAIQAMPDGGSLTVATARDEEAGTCTVSVSDTGRGIAPENLKR 611

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +  +   +       +  ++   +L E  +        +L 
Sbjct: 612 IFSPFFTTKSEGTGLGLSVSYGIVKDHGGNILVESTEGEGTTFRVVLP 659


>gi|86139705|ref|ZP_01058272.1| sensor histidine kinase [Roseobacter sp. MED193]
 gi|85823596|gb|EAQ43804.1| sensor histidine kinase [Roseobacter sp. MED193]
          Length = 488

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82
           HD+ SP+ A+    EL+DE    D ++  +          L F R   G TGS  +  + 
Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           L +    +   +A       S             + L NL      ++  GG   +S   
Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379

Query: 143 SKNENIFSLKINGNLARFPEK 163
             +  + ++  NG      + 
Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400


>gi|322417861|ref|YP_004197084.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320124248|gb|ADW11808.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 493

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 82/226 (36%), Gaps = 27/226 (11%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--- 65
           +  L ++  + + I H+I +P+  I  ++ +L +    ++   LI    +  I RL    
Sbjct: 253 ADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRALIIGEVLEQISRLDKTV 312

Query: 66  ----FMRLAFG-YTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-S 112
               F    FG  T +  +   +    + I            ++K+++++     + +  
Sbjct: 313 NDLLF----FGKPTVAEPACTDINSALKKILIFASQHRGGKNIEKKLELAEDLPPVYVDP 368

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIV 168
           ++  ++ LNLF+ A  ++  GG +T++      D  +     +   G     P+   +I 
Sbjct: 369 KQIQQVFLNLFLNAVQAMQSGGTLTVTSCLAEIDGMDMVQVRVTDTGQGI-PPQILEKIF 427

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +       L  ++  RL     D      +  L 
Sbjct: 428 TPFFTTKAQGTGLGLAISHRLIEQHGGRLSCVSQDGVGTTFTVELP 473


>gi|114762577|ref|ZP_01442021.1| sensor histidine kinase [Pelagibaca bermudensis HTCC2601]
 gi|114544832|gb|EAU47837.1| sensor histidine kinase [Roseovarius sp. HTCC2601]
          Length = 488

 Score = 47.6 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82
           HD+ SP+ A+    EL+DE    D ++  +          L F R   G TGS  +  + 
Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           L +    +   +A       S             + L NL      ++  GG   +S   
Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379

Query: 143 SKNENIFSLKINGNLARFPEK 163
             +  + ++  NG      + 
Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400


>gi|315186284|gb|EFU20045.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Spirochaeta thermophila DSM 6578]
          Length = 388

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 26/223 (11%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAII 62
           L +L  L + + H+I +P+GAI   L+L++ +  +   +          +I+        
Sbjct: 154 LASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPYVGVIKEEIERLNR 213

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +     A          + + ++          ++ +  + VD R+        + L R
Sbjct: 214 IVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRIPED--IPSLSLDR 271

Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGN 171
              K  LLNL   A  ++P GG +T+  Q        S    G     PE   + I +  
Sbjct: 272 RYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVG--IPEHLKEKIFEPY 329

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +    V  +  E+   +  +  +      + L  
Sbjct: 330 FTTKETGSGLGLTLVYKIVQEHGGEIEVQSAEGKGTTFTLLFP 372


>gi|171914219|ref|ZP_02929689.1| histidine kinase [Verrucomicrobium spinosum DSM 4136]
          Length = 416

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 72/206 (34%), Gaps = 19/206 (9%)

Query: 24  HDIISPIGAIHN---SLEL-LDEVGIEDEVM----QLIRLSSMSAIIRLKFMRLAFGYTG 75
           H++ +P+  I      LEL L+  G ED  +    + IR         L+ +R     +G
Sbjct: 210 HEMGTPLSTIALVSRELELELEATGAEDADLVQMSRTIRQEVERCRAILERLR-PLDTSG 268

Query: 76  SVDSLIGLGDIEQVIED--FIAVDKRVQVSWTG-EKIDLSRERAK-ILLNLFMVAHASLP 131
           + +    L ++E  +     +    RV+  W   + + L ++  +  L NL   A  +  
Sbjct: 269 AREPFT-LEELEGSLSASLGMEDRARVRFHWAPKQTVLLPKDAVREALANLVRNALQAAS 327

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD---IQFYYVIL 188
               V IS         F ++ +G     P      +     +T        +  + V L
Sbjct: 328 VPSIVEISATTEAGTIRFEVRDHGPG--LPAGMRHHLGEPFVTTKSPGQGMGLGLHLVRL 385

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           LAH+    L     D        +L 
Sbjct: 386 LAHQMGGNLTATPADGGGERFVLVLP 411


>gi|294055699|ref|YP_003549357.1| GAF sensor signal transduction histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615032|gb|ADE55187.1| GAF sensor signal transduction histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 563

 Score = 47.2 bits (111), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 20/158 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR-LAF 71
           +L + I H+I +P+  I    + LD    E       + +I          ++  R L+F
Sbjct: 353 MLAAEIAHEIRNPLTVIKLLFDSLDLQFIEGDARQTDVTVIGDKLNHLEEIVE--RVLSF 410

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEK----IDLSRERAK-ILL 120
           G   + + +    D+ ++ ED +         +++++ +        +++++ + + ++L
Sbjct: 411 G--RNREGMNARYDLNRLTEDTLRLVRLKLHQQKIEIGYDPTPKGLYVEVNKGQIQQVML 468

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           NL + A   +P GG++ IS  ++     F++   G   
Sbjct: 469 NLILNATQVMPNGGRIHISTTENNGHANFTITDTGPGM 506


>gi|115373515|ref|ZP_01460812.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115369521|gb|EAU68459.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 471

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 22/215 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S + H+I +P+G I    +LL+  G ++E ++ IR     A    +F+     Y+   
Sbjct: 261 LASAVAHEIRNPLGVILAEAKLLELSGADEESVRAIRDQVARAS---RFVEDLLHYSRPR 317

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQ-------------VSWTGEKIDLSRERAKILLNLFM 124
            S +   D+EQV+   ++  ++               + W  +   L      ++ N  +
Sbjct: 318 PSRMQEWDLEQVVAGAVSRARQAFGDAAPEVSLGLEPLRWDVDGEALGDVVVNLVTN-AL 376

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHD- 180
           +A  ++P+ G+V ++ +         ++ NG     A  P  F   V G           
Sbjct: 377 IAVETIPQ-GRVQVTQRRVAEGVRIEVEDNGPGVPEALLPRLFEPFVTGRGRDARHPGTG 435

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +           +   L              LL +
Sbjct: 436 LGLALCRKWVQRHGGTLTHARSATGGARFVILLPR 470


>gi|189426123|ref|YP_001953300.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189422382|gb|ACD96780.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 378

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 82/214 (38%), Gaps = 17/214 (7%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL--KFM 67
           ++ A+L     H++ +P+ ++  + E+L +    G        I++     + R+  +F+
Sbjct: 167 EMAAVLA----HEVRNPLASLRGTAEILRDDFRPGTPKHEFVEIQIKETERLNRVVEEFL 222

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--DLSRER-----AKILL 120
           R+A    G +   +   ++E ++       +R +V+   E    DL+         +  L
Sbjct: 223 RMARQQPGELQRCVVAEELETIVTLTSNEARRRKVTLQLEAANRDLAVNADGEKLRQAFL 282

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           N+ + A  + P GG+VTI+VQ  +      +  +G      E   +I +    +  D   
Sbjct: 283 NIILNALQATPEGGRVTIAVQPQQQNCEIRISDSGPGIN-DEIRQRIFEPFFTTKPDGTG 341

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   +   L  E        +   L 
Sbjct: 342 LGLAVTKKIIEAHGGSLSVESAAGSGTTMVVQLP 375


>gi|317403713|gb|EFV84199.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 441

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 27/177 (15%)

Query: 2   AKNICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED-------E 48
             +  FN     + A L  R      I HD+ +PI  +    E +D+    D       E
Sbjct: 214 QASAAFNAMQDRIAAHLAERMQILGAISHDLQTPITRMKLRSEFMDDSADRDKLAHDLQE 273

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGE 107
           V QL+R         L + R A G      + I L   ++ ++ D+  + K V +     
Sbjct: 274 VEQLVRDG-------LAYARSA-GAATEPPARIDLDAFLDSLVCDYTDIGKPVTLQGHCP 325

Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +R RA  +IL NL      +L  GG   + +  +++ +  S+++       PE
Sbjct: 326 GPWQTRPRALRRILGNLI---DNALKFGGAAEVLIGPAEDGHGVSIRVLDRGPGIPE 379


>gi|115526551|ref|YP_783462.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115520498|gb|ABJ08482.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 455

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 60/176 (34%), Gaps = 16/176 (9%)

Query: 13  DLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
            L  +L  R      + HD+ SPI A+    E++D+    + ++  +          L F
Sbjct: 244 RLARMLGERTRMLAALGHDLRSPITALRVRAEMVDDAENRERMIATLDEMQQMVEATLAF 303

Query: 67  MRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            R   G +       + L  +   +   ++         +   + L   R  +   L  +
Sbjct: 304 AR---GVSTDQPTEPVDLAAMLSELAAELSAIGPPIRITSATPVVLPLRRVPLRRALRNI 360

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVEST 175
              +   GG   + ++   +E    ++  G      +LAR  E F ++       T
Sbjct: 361 LENAQRYGGGGEVRIEHDNDEARVVIEDRGPGMPDSDLARVFEPFVRLETSRSRET 416


>gi|196232791|ref|ZP_03131642.1| response regulator receiver sensor hybrid histidine kinase
           [Chthoniobacter flavus Ellin428]
 gi|196223251|gb|EDY17770.1| response regulator receiver sensor hybrid histidine kinase
           [Chthoniobacter flavus Ellin428]
          Length = 593

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAF 71
           L S I HD+ + +  I  SL+LL         E++  +   +  A   +K    F R   
Sbjct: 212 LASGIAHDLNNMLSPILLSLDLLKVGLPAASWELLGTVETCAQRAASMVKQVLTFARGVE 271

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128
           G    ++    + +IE+++        +++    G+   +  +  ++   LLNL + A  
Sbjct: 272 GERLPLEPKYLIREIEKIVAGTFPRQIKLETRIAGDLPPIKGDSTQLQQVLLNLSLNARD 331

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           ++P GG + I     + + +++    G   
Sbjct: 332 AMPDGGTLRIEADLFEVDELYAAANPGTRI 361


>gi|17545794|ref|NP_519196.1| two-component system sensor histidine kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428088|emb|CAD14777.1| probable two-component system sensor histidine kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 784

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 74/212 (34%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMR-----L 69
           I HD+ SP  AI   +EL  + G       L+     LSS +   A   +   R     L
Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALGHEALLARIQQLSSRTLELADAFIDLARVESQEL 626

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V  ++   D    + +   ++ RV            R   + L+NL   A   
Sbjct: 627 KLTDVDLVGLVLDAADEVWALANHHQIEVRVDADLEASVRGEPRMLVRALVNLVNNAIKF 686

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
            PRG  VT++V+   +    S+   G      + A+  + F ++ +  V        +  
Sbjct: 687 SPRGTTVTVAVRGDADSFAVSVADQGVGIAAEDQAQLFQPFRRLHE-AVADAPSGSGLGL 745

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+    +  H    +  L +
Sbjct: 746 VFVKTVVERHGGRIAVRSVPGHGATFTLWLPR 777


>gi|156743609|ref|YP_001433738.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156234937|gb|ABU59720.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 1034

 Score = 47.2 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 24  HDI------ISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           HD       IS  G+   +L  L         +Q I+ S+  A   ++ + L F      
Sbjct: 675 HDFNNILTVIS--GSADLALTTLPSDSPAYPDIQAIQQSARRATHLVRQL-LTF--ARRQ 729

Query: 78  DSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAH 127
            S     D+  +I+  +      + + ++++W              +  ++L+NL + A 
Sbjct: 730 PSHPQTIDVNALIDGMVPLILRLIGEDIRLTWMPAPHPCPIRIDPHQFEQVLMNLIVNAR 789

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ++P GG + I+   S+      + +     R      Q     +   + +H  + Y+ 
Sbjct: 790 DAMPEGGALVIAT--SQTAPTGDIVVETPYIRIS---VQDTGVGIPVEVKAHIFEPYFT 843


>gi|220918579|ref|YP_002493883.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956433|gb|ACL66817.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 581

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 24/216 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRL---- 64
           +  R+ H+I +P+  I  S+E L E   +             Q I          +    
Sbjct: 359 VARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEGTQAIGEEVRRLKRIVDEFS 418

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA-KI 118
           +F RL         S +   ++   +          V+    ++     +   R++  ++
Sbjct: 419 RFARL----PAPERSEVPAEELASAVLALFPAAPAGVEVERAIAPDLPAVLADRDQVMQV 474

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           LLNL   A  ++P GG++ +  +   +   F +  +G     P    ++ +    +    
Sbjct: 475 LLNLVRNALDAMPSGGRLRLVARSDGDAVAFEVSDSGAGI-APADLERVFEPYFTTKPGG 533

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A E+   L            +  L 
Sbjct: 534 TGLGLAIARRIAEEHGGSLEAASPPGAGATFTLRLP 569


>gi|84503162|ref|ZP_01001247.1| sensor histidine kinase [Oceanicola batsensis HTCC2597]
 gi|159046312|ref|YP_001541984.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
 gi|159046587|ref|YP_001542257.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
 gi|84388403|gb|EAQ01352.1| sensor histidine kinase [Oceanicola batsensis HTCC2597]
 gi|157914071|gb|ABV95503.1| two component integral membrane sensor signal transduction
           histidine kinase [Dinoroseobacter shibae DFL 12]
 gi|157914346|gb|ABV95776.1| two component integral membrane sensor signal transduction
           histidine kinase [Dinoroseobacter shibae DFL 12]
          Length = 488

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82
           HD+ SP+ A+    EL+DE    D ++  +          L F R   G TGS  +  + 
Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           L +    +   +A       S             + L NL      ++  GG   +S   
Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379

Query: 143 SKNENIFSLKINGNLARFPEK 163
             +  + ++  NG      + 
Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400


>gi|84686728|ref|ZP_01014615.1| sensor histidine kinase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665159|gb|EAQ11638.1| sensor histidine kinase [Rhodobacterales bacterium HTCC2654]
          Length = 488

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IG 82
           HD+ SP+ A+    EL+DE    D ++  +          L F R   G TGS  +  + 
Sbjct: 266 HDLRSPLTAMRVRAELVDEEETRDSLIASVEEMQSMVEATLTFAR---GLTGSEGAEVVD 322

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           L +    +   +A       S             + L NL      ++  GG   +S   
Sbjct: 323 LRNFLDSLCSDMAAHCTFAPSDDVAVRLRPNAFRRALRNLL---ENAVRYGGAAKVSWAT 379

Query: 143 SKNENIFSLKINGNLARFPEK 163
             +  + ++  NG      + 
Sbjct: 380 HGSNLVLNIDDNGPGIPVDQL 400


>gi|120603882|ref|YP_968282.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
 gi|120564111|gb|ABM29855.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
          Length = 550

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK----FMRL 69
           L S + H+I +P+G +      L E G+++      +++I          ++    + R 
Sbjct: 271 LASGVAHEINNPLGGVILCFRNLTEGGMDEATRRQHIEVIDDGLEKIRRIVRELMHYARP 330

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFM 124
           A        +   L D    + D+    +R+ V                   ++LLNL +
Sbjct: 331 APLSVREARAD-DLIDRTLALVDYTLQRRRINVVRHVSPDVPPLAIDPDKMGQVLLNLVL 389

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
               ++P GG +TI+ + + ++    ++  G+  
Sbjct: 390 NGADAMPDGGTLTITARRAGDDVRIEVQDTGSGV 423


>gi|119386714|ref|YP_917769.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119377309|gb|ABL72073.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 656

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           + S  L AL  + + I H+I +P+  I  +L++L     D     D  ++LI        
Sbjct: 429 VQSEKLAALGEISAGIAHEINNPLAVIQGNLDVLREVLGDAATPADTELRLIDDQIRRIS 488

Query: 62  I----RLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGE---KIDL 111
           +     L F R      G       L         +   +     V +         + +
Sbjct: 489 LIVTQLLDFARA--DQAGEDHPATDLAQAVAECVPLVGHMLARSSVSLRQDIRSDRPVRI 546

Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164
           SR   + +L+NL + A  ++P+GG++ I+ QD          L++  +    P   
Sbjct: 547 SRIAVQQVLVNLIVNAVHAMPKGGEIRIAGQDEDRAGAAGVLLEVADDGEGIPAAI 602


>gi|115377471|ref|ZP_01464673.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1]
 gi|115365515|gb|EAU64548.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1]
          Length = 464

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 20/209 (9%)

Query: 24  HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLA-FGYT 74
           H+I +P+G I    +L    L     + E + LI  S+          LKF R +     
Sbjct: 249 HEINNPLGGILAFAQLMKRDLGRSEADRESLDLIEESALRCKRIVESLLKFSRHSKVEDR 308

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129
              +    + D   + +  +  + RV++                + ++++LNL      +
Sbjct: 309 RHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASGLPKLFGDPAQLSQVVLNLLQNGLQA 368

Query: 130 LPRG-GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYY 185
           LP   G + +      +   F++  +G+       P  F                +   Y
Sbjct: 369 LPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYLPRIFEPSFTTKPPGEGTGLGLSIAY 428

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  ++      +    H    +  L 
Sbjct: 429 --RIVQDHGGVFQVDTQVGHGSRFTVFLP 455


>gi|197117920|ref|YP_002138347.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087280|gb|ACH38551.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 488

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 71/216 (32%), Gaps = 23/216 (10%)

Query: 17  LLCSRICHDIISPIGAIH--NSL---ELLDEVGIEDEVMQLIRLSSMS---AIIRLKFMR 68
           LL + + H+I +P+ AI   + +   E+  +    D + ++   S          L + R
Sbjct: 273 LLAAGMAHEIGTPLAAIMGYSGILSEEVAGDPEKSDYLRRITEESKRIDRIVRGLLDYAR 332

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERA------KILL 120
                 GS    I +  + + + + +     +++       +  L R  A      ++L+
Sbjct: 333 ----PKGSQREEIEVLQLLEKVVELLEAQGALKLLEVTVEAEPSLPRLYADPHQLEQLLI 388

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDS 178
           NL M A  ++P+GGK+ +            +   G     PE    + D     +     
Sbjct: 389 NLIMNAKDAMPKGGKLQLKGMSVGGGVAIEVADTGEGM-PPEHLPLVFDPFFTTKEPGKG 447

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A      L  +            L 
Sbjct: 448 TGLGLAIAARIAESCGGTLTVQSELGEGSRFRLTLP 483


>gi|148265437|ref|YP_001232143.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146398937|gb|ABQ27570.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 406

 Score = 46.8 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 25/217 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI-------IRLK 65
           +L ALL     H+I +P+G I    +L++E                 A          L 
Sbjct: 197 ELGALLA----HEIRNPLGGIKGFAQLVEESDDAQRSAGFASKIVAQASRLEDLVNDLLA 252

Query: 66  FMR------LAFGYTGSVDSLIGL--GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           F R      L       V+  + L   + EQ       +D ++ ++        +    +
Sbjct: 253 FAREEKDAHLPLDLAPLVEESVALVRHEAEQQ-----HIDVKLSIAHGIVVPIAAERIEQ 307

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           +LLNL   A  ++P GG++   ++  +N  I ++  NG   + P     I +    S + 
Sbjct: 308 LLLNLCKNAVQAMPDGGELRAELRRERNMAIITIADNGIGIQ-PTYLDHIFEPFWTSKVR 366

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +A E+   +  +   +   V +  L 
Sbjct: 367 GTGLGLALCRRIAEEHGGAVRVKSAVNQGSVFTVELP 403


>gi|46578536|ref|YP_009344.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447947|gb|AAS94603.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232462|gb|ADP85316.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris RCH1]
          Length = 554

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK----FMRL 69
           L S + H+I +P+G +      L E G+++      +++I          ++    + R 
Sbjct: 275 LASGVAHEINNPLGGVILCFRNLTEGGMDEATRRQHIEVIDDGLEKIRRIVRELMHYARP 334

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFM 124
           A        +   L D    + D+    +R+ V                   ++LLNL +
Sbjct: 335 APLSVREARAD-DLIDRTLALVDYTLQRRRINVVRHVSPDVPPLAIDPDKMGQVLLNLVL 393

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
               ++P GG +TI+ + + ++    ++  G+  
Sbjct: 394 NGADAMPDGGTLTITARRAGDDVRIEVQDTGSGV 427


>gi|196233248|ref|ZP_03132094.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196222719|gb|EDY17243.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 720

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 13/130 (10%)

Query: 24  HDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYT 74
           HD  + + AI    ELL+     +   ++   Q IR++   A       L F R      
Sbjct: 349 HDFNNLLTAIMGYSELLEAKLERDGASQEFARQ-IRITGEKAAALTKQLLAFSRRQLLSP 407

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLP 131
             +D  + +GD+E++++  I    R+Q+  T  +  +     +  +++LNL + A  ++P
Sbjct: 408 KVLDLNVVVGDLEKLLQRIIGEHIRIQLQTTTVEARVRADPGQLEQVILNLGVNARDAMP 467

Query: 132 RGGKVTISVQ 141
           RGG +TIS +
Sbjct: 468 RGGTLTISTE 477


>gi|15605780|ref|NP_213157.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
 gi|2982944|gb|AAC06560.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
          Length = 339

 Score = 46.4 bits (109), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 21/152 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR-LKFMRLAFGYTGSVDS 79
           H + +P+  I  +LE L++     E +++I+    S  + + + L F R         D+
Sbjct: 141 HQLNTPLATISLALEELEKKCGSCEEIEVIKNALISCKNTVDKLLLFAR--------KDN 192

Query: 80  LIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
              L D ++ +ED +      A ++ V +    E + +      I   +LNL + A  + 
Sbjct: 193 NKDLVDTKKAVEDVLELLRVYAKERGVIIEKELESVYMFGNETDIRHVVLNLVLNAIQAS 252

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            RG KV + ++    E I  ++  G      E
Sbjct: 253 DRGKKVRVFLKKEGEELILIVEDEGKGIPPEE 284


>gi|309951517|gb|ADO95183.1| sensor histidine kinase [Sinorhizobium sp. M14]
          Length = 488

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 31/225 (13%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQL-------IRLSSMS 59
            L +L  L S + H+I +P+G + NS++ L       G+    + L       IR    +
Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNSIDTLKRHGANEGVRSTSVSLLERGLGGIRDVVQA 319

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DLSRE 114
           A+   +  R     +G    L  L D+  ++   + + +R  + W           L   
Sbjct: 320 ALATYRPDR-----SGKPLVLQDLEDVR-LLAGPVIISRRQTMHWVSSPSNLTISALPGS 373

Query: 115 RAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             +  LLNL + A A+    G + +     ++ +   L +       P+  T ++     
Sbjct: 374 TVRQALLNLVLNASAAAGDDGTIFVETCLEEDGSTLILSVADTGPGLPKAATNVL--TSP 431

Query: 174 STIDSHD----IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +  + V  L  E    +     +    V+   L 
Sbjct: 432 DPWPAAQSAGGLGLWMVRKLVDEAGGHIRLSRTEAGLTVIELHLP 476


>gi|171912617|ref|ZP_02928087.1| periplasmic sensor signal transduction histidine kinase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 409

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-------------EVGIEDEVMQLIRLSSMSAIIRL 64
           + +++ H++ +P+GAI  +L+LL                    E   L+           
Sbjct: 151 MAAQVAHEVRNPLGAISLNLDLLACEVTELASSAPTPATHTPHEAHALVDQIRAEVERVE 210

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA 116
           K +R   G+      +     +   +++ +A           R+  S+  +    + +  
Sbjct: 211 KVVRDYLGFARLPKVMPAPHCLHTFLDEKLALLLPELGKAHVRLIKSYDPQVRTANIDAV 270

Query: 117 KI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           ++   LLNL + A  ++P GG + ++ + S      ++   G   R  E    +      
Sbjct: 271 QLWQVLLNLVLNARDAMPAGGVLRVATRQSGTALQITVTDTGCGIR-KEDLPSLFTPFFT 329

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +       +  E+   L  + I       +  L 
Sbjct: 330 TKANGTGLGLALSHQIIAEHDGELSCQSIPGSGTTFTITLP 370


>gi|310825311|ref|YP_003957669.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398383|gb|ADO75842.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 514

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 22/215 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S + H+I +P+G I    +LL+  G ++E ++ IR     A    +F+     Y+   
Sbjct: 304 LASAVAHEIRNPLGVILAEAKLLELSGADEESVRAIRDQVARAS---RFVEDLLHYSRPR 360

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQ-------------VSWTGEKIDLSRERAKILLNLFM 124
            S +   D+EQV+   ++  ++               + W  +   L      ++ N  +
Sbjct: 361 PSRMQEWDLEQVVAGAVSRARQAFGDAAPEVSLGLEPLRWDVDGEALGDVVVNLVTN-AL 419

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHD- 180
           +A  ++P+ G+V ++ +         ++ NG     A  P  F   V G           
Sbjct: 420 IAVETIPQ-GRVQVTQRRVAEGVRIEVEDNGPGVPEALLPRLFEPFVTGRGRDARHPGTG 478

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +           +   L              LL +
Sbjct: 479 LGLALCRKWVQRHGGTLTHARSATGGARFVILLPR 513


>gi|207725203|ref|YP_002255599.1| two-component system sensor histidine kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206590437|emb|CAQ37399.1| two-component system sensor histidine kinase protein [Ralstonia
           solanacearum MolK2]
          Length = 783

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 70/211 (33%), Gaps = 17/211 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMS---AIIRLKFMRLA---- 70
           I HD+ SP  AI   +EL  + G        L+R   LSS +   A   +   R+     
Sbjct: 566 ISHDMRSPQSAILALIELQRDAGRALGHEALLVRIQQLSSRTLELADAFIDLARVESQEI 625

Query: 71  -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V   +   D    +     ++ RV            R   + L+NL   A   
Sbjct: 626 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 685

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFT--QIVDGNVESTIDSHDIQFY 184
            PRG  VT++V++  +    S+   G        P+ F   + +   +        +   
Sbjct: 686 SPRGATVTVAVREEADAFAVSVVDQGVGIAAEDQPQLFQPFRRLHEAMADAPSGSGLGLV 745

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +V  +   +  R+       H    +  L +
Sbjct: 746 FVKTVVERHGGRIAVRSAPGHGATFTLWLPR 776


>gi|134096880|ref|YP_001102541.1| two component system histidine kinase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133909503|emb|CAL99615.1| two component system histidine kinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 504

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 69/204 (33%), Gaps = 15/204 (7%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTGSV 77
           HD+ +P  ++  + + L+  +       + L+   +          L+  R   G     
Sbjct: 288 HDLRTPTASLVAAADSLEHPDPESRSRAVALVSTQARRLARLVDDLLEISRFDSGAAELR 347

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
              + L ++ +   + +  D  V++  T +   +   R ++   +  +   ++  G +  
Sbjct: 348 PEGVDLRELVREAIELVTCDADVRLDATADTTLVGDPR-RLHTIVCNLLANAVHHGAEPV 406

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSHDIQFYYVILLAH 191
               D  +     L++  +    PE+ T+I+           S  D   +        A 
Sbjct: 407 TVAIDGTDPGQVVLRVADSGPGVPEELTRILFDRFVRGDRARSATDGSGLGMAIAQQNAL 466

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
            +  R+     +D   V +  L +
Sbjct: 467 VHGGRITVH--NDGGAVFTLTLPR 488


>gi|310823300|ref|YP_003955658.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396372|gb|ADO73831.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 522

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 66/209 (31%), Gaps = 20/209 (9%)

Query: 24  HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLA-FGYT 74
           H+I +P+G I    +L    L     + E + LI  S+          LKF R +     
Sbjct: 307 HEINNPLGGILAFAQLMKRDLGRSEADRESLDLIEESALRCKRIVESLLKFSRHSKVEDR 366

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129
              +    + D   + +  +  + RV++                + ++++LNL      +
Sbjct: 367 RHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASGLPKLFGDPAQLSQVVLNLLQNGLQA 426

Query: 130 LPRG-GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYY 185
           LP   G + +      +   F++  +G+       P  F                +   Y
Sbjct: 427 LPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYLPRIFEPSFTTKPPGEGTGLGLSIAY 486

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  ++      +    H    +  L 
Sbjct: 487 --RIVQDHGGVFQVDTQVGHGSRFTVFLP 513


>gi|312879449|ref|ZP_07739249.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782740|gb|EFQ23138.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 985

 Score = 46.4 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 75/180 (41%), Gaps = 22/180 (12%)

Query: 24  HDI---ISPI---GAIHNSLELLDEVGIEDEVMQLIRLS--SMSAIIRLKFMRLAFGYTG 75
           HD+   ++PI   G I  + E   +    + V +++R    +   + +L    LAFG   
Sbjct: 625 HDLNNLLTPILGYGEILQA-EFRGDEEKRECVEEILRAGQRARDLVAQL----LAFGRKQ 679

Query: 76  SVD-SLIGLGDI----EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
            ++   + L ++    E+++   I  D +++         +  +  ++   LLNL + A 
Sbjct: 680 VLEFRTLDLNEVVRGFEKLLRRTIREDIKLRFFLQDPLPPIRGDAGQLEQVLLNLAVNAQ 739

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING-NLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ++P+GG +++    +  +  ++    G  + R            ++  + +H  + +Y 
Sbjct: 740 DAMPQGGVLSVETGAADLDEAYAASHQGMTVGRHVLLVVSDSGKGMDEEMRAHLFEPFYT 799


>gi|79075655|gb|ABB51924.1| putative sensor histidine kinase [Agrobacterium tumefaciens]
          Length = 488

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 80/225 (35%), Gaps = 31/225 (13%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQL-------IRLSSMS 59
            L +L  L S + H+I +P+G + NS++ L       G+    + L       IR    +
Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNSIDTLKRHGANEGVRSTSVSLLERGLGGIRDVVQA 319

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DLSRE 114
           A+   +  R     +G    L  L D+  ++   + + +R  + W           L   
Sbjct: 320 ALATYRPDR-----SGKPLVLQDLEDVR-LLAGPVIISRRQTMHWVSSPSNLTISALPGS 373

Query: 115 RAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             +  LLNL + A A+    G ++++    ++ ++  L +       P   T ++     
Sbjct: 374 TVRQALLNLVLNASAAAGDDGTISVATCLEEDGSMLILSVADTGPGLPNAATNVL--TAP 431

Query: 174 STIDSHD----IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +  + V  L  E    +     +    V+   L 
Sbjct: 432 DPWPAAQSAGGLGLWMVQKLVDEAGGHIRLSRTEAGLTVIELHLP 476


>gi|239905818|ref|YP_002952557.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795682|dbj|BAH74671.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 376

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 74/208 (35%), Gaps = 21/208 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD+ SP+  + ++LE L+  G     +  ++ ++  +  +   R    L   RL  G  G
Sbjct: 166 HDLKSPLATVASALEALELAGPLNVQQRGLIAMLERAVAAMTARINLSLHLYRLESGTLG 225

Query: 76  SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126
                +     L D  + +  ++   +  ++++                  +L+NL   A
Sbjct: 226 LTPQPLSLATLLADAREELAPYLTAGREWRIAYEAPAETFIVLGERAMFTAMLVNLLKNA 285

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-SHDIQFYY 185
             +    G V ++V D        L I+      P    ++ + +V +       +  Y 
Sbjct: 286 LEAADEAGSVVVTVAD---PPSPRLVIDNPGEAPPHIRARLFEKHVTAGKARGTGLGAYS 342

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALL 213
             L+A      ++ +       V++  L
Sbjct: 343 ARLIARAFGGDVVADTTIPGRTVVTVTL 370


>gi|156743753|ref|YP_001433882.1| GAF sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156235081|gb|ABU59864.1| GAF sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 492

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 19/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           L S  L A+  L + + H+I +P+ A  NSL L+++             I  + +  I R
Sbjct: 256 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDIPPDTPQRHFLTIAQNELGRIAR 315

Query: 64  L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL---SRE 114
           +      F R A       +    L +  ++++  +   +  V V +      L     +
Sbjct: 316 IITRMRDFYRPARDELEPTEINDLLAETIELVQTHLRHGQVTVTVDFCPNLPRLIAHPDQ 375

Query: 115 RAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF-PEKFTQIVD 169
             ++ LNL + A  ++P GG++ I    S ++  +     + I  +     PE    + +
Sbjct: 376 LRQVFLNLMLNACDAMPHGGQLHITTELSCENDADAQYVVISIRDSGTGINPEHMPHLFE 435

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  ++   +  E         + LL 
Sbjct: 436 PFYTTKPQGTGLGLAISAHIVTQHGGHIQVESEPGAGSTFTVLLP 480


>gi|27383096|ref|NP_774625.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27356270|dbj|BAC53250.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 764

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFG-YTGSVD 78
           HD  + + A+  SLELL       + ++++L+  +   A+    L    LAF        
Sbjct: 401 HDFNNLLAAVLGSLELLKKRLPTDDPKILRLVENAMQGAVRGASLTQRMLAFARKQDLRP 460

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------LLNLFMVAHASLPR 132
           +++ + ++ + +   +  +  + V        L + +         +LNL + A  ++P 
Sbjct: 461 AVVDVRELVRGMASLLKFEAGIDVETRFPMH-LPKVKVDANQLELAILNLAVNARDAMPD 519

Query: 133 GGKVTISVQDSKNENIFS 150
           GG++TI+ ++ + E   S
Sbjct: 520 GGQITIAAREEQGEGGLS 537


>gi|294338507|emb|CAZ86835.1| Sensor protein kdpD [Thiomonas sp. 3As]
          Length = 914

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVM 50
           +A++    + +  +   L S + HD+ +P+ A+  + E+L          D   +  + +
Sbjct: 656 VAQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLVAHPPGDAATLHSQAL 715

Query: 51  QLIRLS---SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVS 103
            L++ S   +      L   RL  G          + +      + ++        +Q+ 
Sbjct: 716 SLLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQID 775

Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158
              +   +  +     ++L+NL   A    P G  + +  +    E   ++   G     
Sbjct: 776 LPADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPA 835

Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            R    F     G+ ES I    +       +   +  R+      +     +  L 
Sbjct: 836 GRERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892


>gi|114777110|ref|ZP_01452130.1| Sensory histidine kinase (with HAMP and PAS domains) [Mariprofundus
           ferrooxydans PV-1]
 gi|114552631|gb|EAU55091.1| Sensory histidine kinase (with HAMP and PAS domains) [Mariprofundus
           ferrooxydans PV-1]
          Length = 386

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 77/213 (36%), Gaps = 24/213 (11%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTG 75
           HD+ +P+ ++      L    D+ G   E +Q+I   +          L   ++ F    
Sbjct: 174 HDLKTPLTSLLGYARSLQRFGDDPGFRQEAIQVIADEAKHVNHLLDAMLTLDQIEF-AGS 232

Query: 76  SVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLS-RERA----KILLNLFMVAH 127
             D+     D+ + + D +     +K++ +           R       +++ NL   A 
Sbjct: 233 DPDASCDAEDVIRQVCDMLKEPVSNKKISLICDIPDDLPDMRMDVDSFERVVRNLLENAT 292

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDI 181
              P+GG+VT+S+Q   +     ++ +G         R  E+F ++ D         H +
Sbjct: 293 QYAPKGGRVTLSLQQEGDMGRLVVRDDGPGIPDKHLKRVTERFYRV-DKARSREYGGHGL 351

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  L   +   +    +D H +  +  + 
Sbjct: 352 GLAIVKELCEAHGGSVQLTNVDPHGLEATLAIP 384


>gi|189424232|ref|YP_001951409.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189420491|gb|ACD94889.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 551

 Score = 46.0 bits (108), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 25/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----IIRLKFMRL 69
           L + + H++ +P+G+I     LL    +    + E + +I   +  +       L F R 
Sbjct: 333 LSAGVAHELNTPLGSILGYARLLLKQENLTQQQREQLAVIAEQAKKSGTIIQALLNFSRH 392

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSWTGEKIDLSRERA------KIL 119
           A          +   D+  VI++ +        + ++  T +   + +  A      +++
Sbjct: 393 A----QPTQCRLDACDLNSVIKNALCLLTTELSKRKIILTTDLELIPKVCADPWGIEQVV 448

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           LNL M A  ++   G++ I V+         ++ +G      E  ++I D    +     
Sbjct: 449 LNLVMNALQAIGSQGEIRIIVRRQPEGVRLEVQDSGPGI-PDEVRSRIFDPFFTTKPFGE 507

Query: 180 DIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
                  I   + +EN   +     D        +L 
Sbjct: 508 GTGLGLSICAGIVNENGGNIDIVKSDSRGTTFVVILP 544


>gi|291006677|ref|ZP_06564650.1| two component system histidine kinase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 517

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 69/204 (33%), Gaps = 15/204 (7%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTGSV 77
           HD+ +P  ++  + + L+  +       + L+   +          L+  R   G     
Sbjct: 301 HDLRTPTASLVAAADSLEHPDPESRSRAVALVSTQARRLARLVDDLLEISRFDSGAAELR 360

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
              + L ++ +   + +  D  V++  T +   +   R ++   +  +   ++  G +  
Sbjct: 361 PEGVDLRELVREAIELVTCDADVRLDATADTTLVGDPR-RLHTIVCNLLANAVHHGAEPV 419

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSHDIQFYYVILLAH 191
               D  +     L++  +    PE+ T+I+           S  D   +        A 
Sbjct: 420 TVAIDGTDPGQVVLRVADSGPGVPEELTRILFDRFVRGDRARSATDGSGLGMAIAQQNAL 479

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
            +  R+     +D   V +  L +
Sbjct: 480 VHGGRITVH--NDGGAVFTLTLPR 501


>gi|170740074|ref|YP_001768729.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194348|gb|ACA16295.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 927

 Score = 46.0 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 21/177 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIR---LSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + +  I  SL++L   G+  E  Q LI     S+  A   ++ + LAF        
Sbjct: 577 HDFNNLLTPIVGSLDMLQRRGLGGEREQRLIAGAMQSAERAKTLVQRL-LAF--ARRQPL 633

Query: 80  L---IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAK------ILLNLFMVAHAS 129
               + +  +   + D +A     Q+    +  D L   +A        LLNL + A  +
Sbjct: 634 QPIPVDVAKLVTGMGDLVASTMGPQIRVAVDAPDALPPAKADPNQIEMALLNLCVNARDA 693

Query: 130 LPRGGKVTISVQDSKNENIFSLKIN-GNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           +P GG + IS +           +  G   R            ++    +  ++ ++
Sbjct: 694 MPEGGTLRISARAETVGPGHRTTLRPGPYIRLS---VADSGTGMDEATLARAVEPFF 747


>gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 914

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 24/170 (14%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI----IRL 64
           + +A+L     H++ +P+  I N++EL+        I+ + + +I   +          L
Sbjct: 548 EFLAMLG----HELRNPLAPICNAVELMRMHLHHPAIQSKSIDIIDRQAKHLTRLVNDLL 603

Query: 65  KFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSWTGEKIDL-----SRER 115
              R+  G        + L +      +  +  I    R +++ +     L         
Sbjct: 604 NVARIVTGKINLKTQPVELKEVVMQAVETAQPAIE-SARHELTLSLPAQPLKVEADPVRL 662

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKF 164
            +I+ NL   A    P GG + + V  S + E I  ++ NG     PEK 
Sbjct: 663 VQIVANLLNNAVNYTPSGGHIQLQVAQSQEGEAIIRVRDNGVGI-LPEKL 711


>gi|296134571|ref|YP_003641813.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia
           K12]
 gi|295794693|gb|ADG29483.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia
           K12]
          Length = 914

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 77/237 (32%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVM 50
           +A++    + +  +   L S + HD+ +P+ A+  + E+L          D   +  + +
Sbjct: 656 VAQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLAAHPPGDAATLHGQAL 715

Query: 51  QLIRLS---SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVS 103
            L++ S   +      L   RL  G          + +      + ++        +Q+ 
Sbjct: 716 SLLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQID 775

Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158
              +   +  +     ++L+NL   A    P G  + +  +    E   ++   G     
Sbjct: 776 LPADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPA 835

Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            R    F     G+ ES I    +       +   +  R+      +     +  L 
Sbjct: 836 GRERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892


>gi|241912487|gb|ACS71957.1| integral membrane sensor histidine kinase/response regulator
           [Azospirillum brasilense]
          Length = 711

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 9/98 (9%)

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDL--SRERAKI---LLNLFMVAHASL 130
             +I LGD  + + D +    R    + W      L    +  ++   +LNL + A  ++
Sbjct: 420 PKVIDLGDALRAMADLLERSIRADIALDWALPSAPLRVEVDPVQLELAVLNLVVNARDAM 479

Query: 131 PRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQ 166
           P GG++ I+V+  +  +  +  L+I       P +   
Sbjct: 480 PEGGRIRIAVRQEETPDGPLAVLEITDTGGGMPPEVAA 517


>gi|225165773|ref|ZP_03727562.1| Signal transduction histidine kinase-like protein [Opitutaceae
           bacterium TAV2]
 gi|224799984|gb|EEG18424.1| Signal transduction histidine kinase-like protein [Opitutaceae
           bacterium TAV2]
          Length = 722

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 31/193 (16%)

Query: 13  DLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---R 63
            L A++  R      I HD+  P G++ +   +L +   E    +L  +S+  A     +
Sbjct: 484 RLSAMVVGRNRVLSIIGHDLRGPAGSLQSLTRMLADESAEFTSAELAEISTEIARACMLQ 543

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------TGEKIDLS 112
           ++ +     ++GS  +  G  +    + D +    R+ + W                 + 
Sbjct: 544 VELLNNLLAWSGSALASTGRPEAVADVRDAVGETWRL-LEWTAGTKKLTFTQDVPAGLVV 602

Query: 113 RERAK----ILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEK 163
           R  A     IL NL + +    P GG++ ++      +D   E    ++++      P  
Sbjct: 603 RAEASHLQTILRNLLVNSIKFTPAGGRIRVAAGLVPARDPGEEARVEIRVSDTGVGIPPA 662

Query: 164 -FTQIVDGNVEST 175
              +++DG VEST
Sbjct: 663 RLERLLDGIVEST 675


>gi|330831699|ref|YP_004394651.1| sensor histidine kinase [Aeromonas veronii B565]
 gi|328806835|gb|AEB52034.1| Sensor histidine kinase [Aeromonas veronii B565]
          Length = 473

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 18/208 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           H++ SP+ AI  + E+L E    +   + I         R        L+  RL  G   
Sbjct: 265 HELKSPLAAIRGAGEILAETPPPEVAKRFIGN-INQETARMQQLIERMLQLARLESGQGL 323

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL------NLFMVAHAS 129
              S+      ++ ++    + +R QV    E     +++   LL      NL   A   
Sbjct: 324 DRQSVEPAKLGKRTLDARQIIAQRRQVELVAELASAPKQKWDPLLVEQAIGNLLDNAIDF 383

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYV 186
            P  G+VT+S    +    F +  +G        P  F +           S  +   + 
Sbjct: 384 SPANGQVTLSGSQQEEGYCFRVTDSGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFA 443

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +AH++  RL      +   +    L 
Sbjct: 444 HEVAHQHGGRLTLSNRPEGGALAELWLP 471


>gi|225872344|ref|YP_002753799.1| sensory box histidine kinase, putative [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793977|gb|ACO34067.1| sensory box histidine kinase, putative [Acidobacterium capsulatum
           ATCC 51196]
          Length = 647

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 27/202 (13%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           H++ +PI AI   LELL    +      + + +I+         ++ +            
Sbjct: 422 HEVKNPINAIVVHLELLRNKVELKEPAQKHLDIIQSEIRRLDRVVQTL-------VDFSR 474

Query: 80  LIGLG----DIEQVIEDFIA------VDKRVQVSWTGEKIDLS-RERA----KILLNLFM 124
            + L     D+ Q+++  +         + V +  +  +  ++ +  A    + LLN+ +
Sbjct: 475 PVDLHMREYDLRQIVQQVLTLASVELEGRGVTLKSSLPEFPVTVKVDADLTTQALLNVVI 534

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
               ++P GG + + + +     I  ++  G     PE   +I D    +  D   I   
Sbjct: 535 NGAQAMPDGGLLDVRLAEDGRWAIIRVRDEGTGI-PPEVLPRIFDLYYTTKKDGSGIGLA 593

Query: 185 YVILLAHENKIRLLPEIIDDHN 206
               +      R+  E      
Sbjct: 594 MTYRILQFQNGRVDVESSSGGT 615


>gi|224825196|ref|ZP_03698302.1| histidine kinase [Lutiella nitroferrum 2002]
 gi|224602867|gb|EEG09044.1| histidine kinase [Lutiella nitroferrum 2002]
          Length = 708

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 67/178 (37%), Gaps = 18/178 (10%)

Query: 21  RICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYT 74
           R+ H++ +P+  I N + +L+      G     + ++R         L+  R   A G +
Sbjct: 493 RLVHELNNPLAIIRNYVSILEAASAGKGAPQPELAIVREEIDRVAHMLRAAREQQAEGES 552

Query: 75  GSVDSLIGL--GDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAK-ILLNLFMVAH 127
                 +     D+  +    I        R+ ++     I   R+R K +L+NL   A 
Sbjct: 553 ARGPVKLNRIVEDLATLFRGSIPFAGLVDIRLDLAEALPDIVSDRDRLKQLLVNLIKNAL 612

Query: 128 ASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHD 180
            ++P+GG VT+S           +   +++  N    P E  TQ+          SH 
Sbjct: 613 EAMPQGGHVTLSTAAWGLGEAGASHVEIRVEDNGPGIPKEVLTQLYQPVASQKPGSHQ 670


>gi|207743578|ref|YP_002259970.1| two-component system sensor histidine kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|206594977|emb|CAQ61904.1| two-component system sensor histidine kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 783

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMS---AIIRLKFMRLA---- 70
           I HD+ SP  AI   +EL  + G        L+R   LSS +   A   +   R+     
Sbjct: 566 ISHDMRSPQSAILALIELQRDAGRALGHEALLVRIQQLSSRTLELADAFIDLARVESQEI 625

Query: 71  -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V   +   D    +     ++ RV            R   + L+NL   A   
Sbjct: 626 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 685

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
            PRG  VT++V++  +    S+   G      + A+  + F ++ +  +        +  
Sbjct: 686 SPRGATVTVAVREEADAFAVSVADQGVGIAAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 744

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+       H    +  L +
Sbjct: 745 VFVKTVVERHGGRIAVRSAPGHGATFTLWLPR 776


>gi|83749287|ref|ZP_00946286.1| Phosphate regulon sensor protein phoR [Ralstonia solanacearum
           UW551]
 gi|83724068|gb|EAP71247.1| Phosphate regulon sensor protein phoR [Ralstonia solanacearum
           UW551]
          Length = 784

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMS---AIIRLKFMRLA---- 70
           I HD+ SP  AI   +EL  + G        L+R   LSS +   A   +   R+     
Sbjct: 567 ISHDMRSPQSAILALIELQRDAGRALGHEALLVRIQQLSSRTLELADAFIDLARVESQEI 626

Query: 71  -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V   +   D    +     ++ RV            R   + L+NL   A   
Sbjct: 627 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 686

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
            PRG  VT++V++  +    S+   G      + A+  + F ++ +  +        +  
Sbjct: 687 SPRGATVTVAVREEADAFAVSVADQGVGIAAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 745

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+       H    +  L +
Sbjct: 746 VFVKTVVERHGGRIAVRSAPGHGATFTLWLPR 777


>gi|126731838|ref|ZP_01747642.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Sagittula stellata E-37]
 gi|126707665|gb|EBA06727.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Sagittula stellata E-37]
          Length = 382

 Score = 45.7 bits (107), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 77/212 (36%), Gaps = 24/212 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD+ +PI A+ + L +++E  +  E   ++ L    A+ R        + F R   G   
Sbjct: 170 HDLRNPIAAVTSGLRMIEERDLLPERRAMLVLEMQRALTRASQIITNLMDFARGRLGAGI 229

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLP 131
            +++   + D+  V  D I   ++V        IDL R       ++   L  +   ++ 
Sbjct: 230 EMNAPAPV-DLAPVFRDVIGEIEQVAGQPVYSSIDLPRALVADPQRLGQLLSNLLGNAVT 288

Query: 132 RGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSHDIQ 182
            G     +T+ + +   E + S+   G  A  P      +      + +   ++    + 
Sbjct: 289 HGAPSQPITVDIAERDGELVASVTNQG--APIPPDVQASLFQPFSRNESKRKSLQGLGLG 346

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y    +A  +  RL     ++     +  + 
Sbjct: 347 LYIASQIALAHGGRLHVSSSEEAGTTFTLRMP 378


>gi|311696853|gb|ADP99726.1| two-component system sensor histidine kinase [marine bacterium
           HP15]
          Length = 472

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 10/149 (6%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           D   LL + + HD+ +PI ++   +E+L E    D ++  +R     A   L F+R   G
Sbjct: 266 DRARLLAA-LAHDLRTPITSMRLRVEMLPEGEDRDRLLDSLREMQHLAEATLDFIR---G 321

Query: 73  YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129
            T        L  +   +  D   +   V    +   +   +  A  + L NL      +
Sbjct: 322 TTTEQHRRYDLATLLDSLCGDLQEMGLAVHCDDSPRCVLQGQPEAVKRALRNLI---ENA 378

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +  G +  +++  +  E + ++   G   
Sbjct: 379 VNYGEQAEVTLATTDTEAVVTIVDQGPGI 407


>gi|118580923|ref|YP_902173.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503633|gb|ABL00116.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 543

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 24/220 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRL 64
           S  L  L  L +R+ H+I +P+ A+  S++LL + G     +  ++ +I   +      +
Sbjct: 319 SDKLAVLGSLAARMAHEIRNPLAAMSGSVQLLADHGTVAENDQRLLAIILRETDRLNALI 378

Query: 65  K-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEK---IDLSRERAK 117
             F+  A          I LG +   +   ++ D+R   + ++    +   I   + + +
Sbjct: 379 TSFLTYA-RPVSPHKERISLGGLIDEVRLLVSSDRRFGGITLTAQVPERMTISADQNQLR 437

Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            +L+NL   A  ++P GG+V IS   +  E+    +    +              +   +
Sbjct: 438 QVLINLLNNAAEAMPEGGRVEISAHLASPEDGDRAEQRAVITVSD------SGSGITDEV 491

Query: 177 DSHDIQFYYVILLAHENKIRLL--PEIIDDHNVVLSALLE 214
            +H  + ++    +    + L     II++H   ++A   
Sbjct: 492 AAHLFEPFWTTK-SDGCGLGLAITYRIIEEHGGTITAESP 530


>gi|307718253|ref|YP_003873785.1| sensory transduction histidine kinase [Spirochaeta thermophila DSM
           6192]
 gi|306531978|gb|ADN01512.1| putative sensory transduction histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 388

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 26/223 (11%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAII 62
           L +L  L + + H+I +P+GAI   L+L++ +  +   +          +I+        
Sbjct: 154 LASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPYVGVIKEEIERLNR 213

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +     A          + + ++          ++ +  + VD R+        + L R
Sbjct: 214 IVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRIPED--IPSLSLDR 271

Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGN 171
              K  LLNL   A  ++P GG +T+  Q        S    G     PE   + I +  
Sbjct: 272 RYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVG--IPEHLKEKIFEPY 329

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +    V  +  E+   +  +  +      + L  
Sbjct: 330 FTTKDTGSGLGLTLVYKIVQEHGGEIEVQSKEGKGTTFTLLFP 372


>gi|219849102|ref|YP_002463535.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543361|gb|ACL25099.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 475

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 81/226 (35%), Gaps = 21/226 (9%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           L S  L A+  L + + H+I +P+ A  NSL L+++             I    +S I R
Sbjct: 239 LQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQQELSRIAR 298

Query: 64  L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----R 113
           +      F R + G   + +    L +  +++   +     V V                
Sbjct: 299 IITRMRDFYRPSRGELTNANINALLRETLELVTTHLRHSH-VTVHTQLAPDLPPIVAHAD 357

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARF-PEKFTQIV 168
           +  ++ LN+ + A  ++P GG++T+  +      +     ++ I+       PE    + 
Sbjct: 358 QLRQVFLNIILNACDAMPGGGELTVRSELIASRPEEPMTLAVSISDTGVGIDPEHIPHLF 417

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +  ++  R+L +         + LL 
Sbjct: 418 EPFYTTKPHGTGLGLAISAHIITQHGGRILVDSQPGVGTTFTILLP 463


>gi|78042822|ref|YP_360841.1| extracellular solute-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994937|gb|ABB13836.1| extracellular solute-binding protein, family 3/sensory box
           histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 656

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 78/206 (37%), Gaps = 19/206 (9%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTG 75
           H+I +P+  + + LELL    ++    +EV+ +++    +        L + R       
Sbjct: 444 HEIKNPLFTVKSYLELLPLKANDPAFREEVINILKNELDNVQKLINDLLNYAR----PQN 499

Query: 76  SVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
           S   ++ L ++   + + +    + K++ V        +  +  ++    +NL + A  +
Sbjct: 500 SKKEIVVLEEVIAPLLNLLEPQFIAKQITVFKENLGFAVYADPMQLRHVFMNLLLNAIDA 559

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           +   G++ I   +  ++    ++  G     P+   QI +    S  D + I       L
Sbjct: 560 IQDKGEIKIKAAEYGDKIKIEVQDTGIGI-PPQYLNQIFNLFFTSKKDGNGIGLAICQKL 618

Query: 190 AHENKIRLLPEIIDDHNVVLSALLEK 215
             EN   +L +         +  L K
Sbjct: 619 IQENGGSILVDSTPGAGTTFTIFLPK 644


>gi|300704594|ref|YP_003746197.1| sensor protein, histidine kinase transcriptional regulator
           [Ralstonia solanacearum CFBP2957]
 gi|299072258|emb|CBJ43591.1| Putative sensor protein, histidine kinase transcription regulator
           [Ralstonia solanacearum CFBP2957]
          Length = 766

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMS---AIIRLKFMRLA---- 70
           I HD+ SP  AI   +EL  + G       L+     LSS +   A   +   R+     
Sbjct: 549 ISHDMRSPQSAILALIELQRDAGRALGHEALLARIQQLSSRTLELADAFIDLARVESQEI 608

Query: 71  -FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V   +   D    +     ++ RV            R   + L+NL   A   
Sbjct: 609 RLSDVDLVGLALDAADEVWALASQHQIEVRVDADIEASVRGEPRMLVRALVNLLNNAIKF 668

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
            PRG  VT++V++  +    S+   G      + A+  + F ++ +  +        +  
Sbjct: 669 SPRGAIVTVAVREEADAFTVSVADQGVGIAAEDQAQLFQPFRRLHE-AMADAPSGSGLGL 727

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+  +    H    +  L +
Sbjct: 728 VFVKTVVERHGGRIAVQSAPGHGATFTLWLPR 759


>gi|197123814|ref|YP_002135765.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196173663|gb|ACG74636.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 581

 Score = 45.7 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 24/216 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRL---- 64
           +  R+ H+I +P+  I  S+E L E   +             Q I          +    
Sbjct: 359 VARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEGTQAIGEEVRRLKRIVDEFS 418

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRER-AKI 118
           +F RL         S +   ++   +          V+    V+     +   R++  ++
Sbjct: 419 RFARL----PAPERSEVPAEELASAVLALFPAAPPGVEVERAVAPDLPAVLADRDQIMQV 474

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           LLNL   A  ++P GG++ +  +   +   F +  +G     P    ++ +    +    
Sbjct: 475 LLNLVRNALDAMPSGGRLRLVARRDGDAVAFEVSDSGAGI-APADLERVFEPYFTTKPGG 533

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A E+   L            +  L 
Sbjct: 534 TGLGLAIARRIAEEHGGALEAASTPGAGATFTLRLP 569


>gi|186683916|ref|YP_001867112.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466368|gb|ACC82169.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 878

 Score = 45.3 bits (106), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 19/159 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAI 61
           L +  L +L  L S I HD+ + +  I +S+E+L       +      ++L+  +S  A 
Sbjct: 501 LRAQRLESLGTLASGIAHDLNNILTPILSSVEMLALKLPNLDARNQQLLKLLEHNSKRAA 560

Query: 62  IRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111
             +K    F R + G   S+     L +IEQ+I+        + +     +  L      
Sbjct: 561 DLVKQILTFSRRSEGNGISLKIEHLLLEIEQIIQSTFPKS--IAIINNVPRHKLWTILAD 618

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
             +  ++L+NL + A  ++P+GG + IS ++   +  F+
Sbjct: 619 PTQIHQVLMNLCVNARDAMPKGGTLFISAENLFVDENFA 657


>gi|78047261|ref|YP_363436.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325927392|ref|ZP_08188640.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|78035691|emb|CAJ23382.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325542213|gb|EGD13707.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 951

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL    E G  D +   +++ + S+  A    + + LAF    
Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + + ++ + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 642 TLAPTALDVEELVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 702 DAMPDGGQLTISLHN 716


>gi|86749493|ref|YP_485989.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86572521|gb|ABD07078.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 456

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 52/158 (32%), Gaps = 10/158 (6%)

Query: 13  DLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
            L  +L  R      + HD+ SPI A+    E++D+   ++ ++  +          L F
Sbjct: 245 RLARMLGERTRMLAALGHDLRSPITALRVRAEMVDDAENKERMIATLDEMQQMVEATLAF 304

Query: 67  MRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            R   G +       + L  +   +   ++         +   I L   R  +   L  +
Sbjct: 305 AR---GVSTDQPTEPVDLAALASELAAELSAIGPPIRITSATPIVLPLRRVPLRRALRNI 361

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +   GG   + V+    E    ++  G      + 
Sbjct: 362 LENAQRYGGGAEVRVEQDGTEVRMVIEDRGPGLPDSDL 399


>gi|116625742|ref|YP_827898.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116228904|gb|ABJ87613.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 587

 Score = 45.3 bits (106), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 66/163 (40%), Gaps = 14/163 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFG 72
           L   I HD+ +P+ AI+   E+L +  +    ++ +  +   A  +++      + ++ G
Sbjct: 368 LSGSIVHDLRNPLAAIYGGAEMLVDTELPPLHVKRLAGNIYRASRKIQELLQDLLNVSRG 427

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGE-KIDLSRERA-KILLNLFMV 125
              S      L ++     D +A         + +    E ++ L R R  ++  NL   
Sbjct: 428 KQ-SAPENCRLREVASAACDSLATAAEQQGIAISLEIPSEIEVPLERSRVERVFANLVGN 486

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           A  ++  GG+V I+ +      +  ++  G     PE  T++ 
Sbjct: 487 ALEAMQSGGEVHITAEMRDGAAVIHVEDTGPGI-APEIRTKLF 528


>gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 760

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRL 69
           LL   + HDI + +  I  S ELL+ +    E    +  IR S+      ++    F R 
Sbjct: 389 LLAGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAALVRQLLAFARG 448

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126
           A G    V     L D    +         V ++       +  +  ++   L+NL + A
Sbjct: 449 AVGQHTDVMLRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLKQVLMNLCINA 508

Query: 127 HASLPRGGKVTISVQDS 143
             ++P GG++T+ V ++
Sbjct: 509 RDAMPEGGRITLHVTNT 525


>gi|39936633|ref|NP_948909.1| two component sensor histidine kinase [Rhodopseudomonas palustris
           CGA009]
 gi|39650489|emb|CAE29012.1| two component sensor histidine kinase [Rhodopseudomonas palustris
           CGA009]
          Length = 444

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 75/204 (36%), Gaps = 16/204 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    E +++     + +  +          L F+R   G T    +LI
Sbjct: 240 ISHDLRTPITRMRLRAEFIEDDHQRTQTLHDLDQMGAMLTAVLTFLRD--GATRDAPTLI 297

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVT 137
            L    Q+I D  A     +V++ G +  +      +  + + NL      ++  G +VT
Sbjct: 298 DLASAMQLITDQFADIG-AKVAYQGPEHAMAMARPGDLHRAVTNLV---ENAVRFGTEVT 353

Query: 138 ISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD---IQFYYVILLAH 191
           I +   +++ I  ++ +G      +K       V G+    +D      +       +A 
Sbjct: 354 IRLALDQDQIIIEVEDDGPGIADADKDSVMQPFVRGDDARNMDDSSSFGLGLSIARAIAR 413

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
            +   L       H ++    L +
Sbjct: 414 GHGGELSLHTRTPHGLIARITLPR 437


>gi|149917201|ref|ZP_01905701.1| multi-sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
 gi|149822117|gb|EDM81510.1| multi-sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
          Length = 566

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 22/222 (9%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLSSM---SAI 61
           S  L AL  L + + H++ +P+ AI    ELLD +   DE  +LI    R S        
Sbjct: 348 SERLAALGGLAASVAHEVRNPLAAISGCAELLDTLDANDEDRRLIRVIRRESVRLNEIVT 407

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLS-------R 113
             L + R          + + L     ++ E F A  +   +    E             
Sbjct: 408 ELLDYTR----PRKLERAPVDLCQALRELAEAFEADPQNAAIDLALELPPTPVHAELDSS 463

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++L NL      ++   G++ + V  S       ++  G      +    I +    
Sbjct: 464 QITQVLWNLVRNGAQAMAHEGRLELGVVASLEFVHIHVRDQGRGIPDKD-LEHIFEPFFS 522

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      I    V  +  ++   +               L K
Sbjct: 523 TKDGGSGIGLALVQRIVEDHGGDIEVYSRVGEGTRFMVNLPK 564


>gi|148656031|ref|YP_001276236.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568141|gb|ABQ90286.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 488

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 19/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           L S  L A+  L + + H+I +P+ A  NSL L+++             I  + +  I R
Sbjct: 256 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDMPPDAPQRHFLTIAQNELGRIAR 315

Query: 64  L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL---SRE 114
           +      F R A       +    L +  ++++  +      V  S+      L     +
Sbjct: 316 IITRMRDFYRPARDELELTEVNDLLAETIELVQTHLRHGHVTVTASFCPNLPLLVAHPDQ 375

Query: 115 RAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF-PEKFTQIVD 169
             ++ LNL + A  ++P GG++ I    S ++ ++E    + +        PE    + +
Sbjct: 376 LRQVFLNLMLNACDAMPNGGQLHISTELSCRNERDEQWVVVAVRDTGVGINPEHMPHLFE 435

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  ++   +  E         + LL 
Sbjct: 436 PFYTTKPQGTGLGLAISAHIVTQHGGHIQVESTPGVGSTFTVLLP 480


>gi|296124082|ref|YP_003631860.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016422|gb|ADG69661.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 483

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 35/203 (17%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRL 55
           + ++    +      A  LL + I H++ +P+ AI + ++LL+   I+    E + L+  
Sbjct: 232 LQESQAMLVQHEKQAAFGLLAAGIAHEVGNPLAAISSLVQLLNRRDIDAHTREKLHLVDD 291

Query: 56  SSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                   L+    F R       +V++   + ++           KR +          
Sbjct: 292 QLRRIQRTLRELVDFSR----PATNVETNCDIHEVLGAALSIAKYYKRKKGKRIVTAFAE 347

Query: 112 SRERAKIL--------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +  R + +        LNL + A  +   GG++ IS   +       ++ +G+      +
Sbjct: 348 NIPRVRAVRDQLVQVFLNLILNALDATEEGGQIHISTSIADGWLRIDIRDDGHGIEPAAR 407

Query: 164 FTQIVDGNVESTIDSHDIQFYYV 186
                         S   Q Y+ 
Sbjct: 408 --------------SRIFQPYFT 416


>gi|220915723|ref|YP_002491027.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953577|gb|ACL63961.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 516

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 27/229 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
           L +  L A+  + ++I H+I +P+ AI  + ELL E               +SAI R   
Sbjct: 278 LRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLVSAISREVD 337

Query: 64  ---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L+F RL             L +I   + DF+  +           +     
Sbjct: 338 RLNAVTEEYLRFARL----PRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALAPGLP 393

Query: 115 RAK--------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FT 165
             +        + LNL   +  ++P GG VT+  + + +      ++       P    T
Sbjct: 394 GVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPPGDLT 453

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +      +   +   +  E+   +  E       + +    
Sbjct: 454 RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502


>gi|91200750|emb|CAJ73802.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1066

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 21/151 (13%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRL 64
           S  L ++  L + I H+I +P+GAI NS+ +LD      G + +++++I   S      +
Sbjct: 830 SEKLASMGELAAAIAHEIRNPLGAICNSVGILDSHLKLSGQDMDLLEMIVGESERLDRII 889

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGE---KIDLSRERA-- 116
               L+F      +  + L DI+ +I++    +  DKR       +   +  L +     
Sbjct: 890 SDF-LSF--AHPREPSLVLQDIKGIIKNTIFLLGQDKRFTDKIEIKEIYETVLPKVYIDT 946

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDS 143
               +IL NLF+ +  ++P GG++ I V+ +
Sbjct: 947 DLIHQILWNLFINSLDAMPDGGRIRIVVRKT 977


>gi|261339000|ref|ZP_05966858.1| hypothetical protein ENTCAN_05205 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318831|gb|EFC57769.1| sensor histidine kinase CreE [Enterobacter cancerogenus ATCC 35316]
          Length = 474

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 45/222 (20%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS------------AIIRLK------ 65
           H++ SP+ AI  + E+L E    +   + I    +             A  RL+      
Sbjct: 265 HELKSPLAAIRGAAEILSERPPPEVAARFIDNILVQNARMQSLVEKLLAQARLENRVDIV 324

Query: 66  ---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                    F RLA    GS  +L+    +  V +          ++  G+   L     
Sbjct: 325 PVNVSVETLFTRLA----GSRPALLAAKQLTLVCQSG-------SLAVQGDPDLLE---- 369

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVE 173
           + L NL   A    P GG + ++ +++++    ++  +G+          F +      E
Sbjct: 370 QALGNLLDNAIDFTPEGGAIQLAARETQDRVQLTVTDSGSGIPDYALDRIFERFYSLPRE 429

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + S  +   +V  +A  ++  +     ++  V+ +  L +
Sbjct: 430 NGVKSSGLGLAFVQEVARLHQGEITLRNREEGGVIATLTLHR 471


>gi|217331418|gb|ACK38264.1| sensor histidine kinase [Ochrobactrum tritici]
          Length = 488

 Score = 44.9 bits (105), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 17/218 (7%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            L +L  L S + H+I +P+G + N+++ L       G+ +  + L+          ++ 
Sbjct: 260 KLASLGRLASSMAHEINNPLGGLFNTIDTLKQHGGNEGVRNTSLSLLERGLGGIRDVVQA 319

Query: 67  MRLAFGYTGSVDSLI--GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KI 118
               +    S   L+   L D+  ++   +   +   ++W  +  +L+          + 
Sbjct: 320 TLATYRPDRSGHPLVLKDLEDVR-LLAGPVVAGRTQTLNWMSKPAELTFPALPGSAVRQA 378

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STI 176
           LLNL + A A+    G++ +  +  +  +   L +        +    ++       +  
Sbjct: 379 LLNLVLNASAAAGDYGEIFVETRLGEEGSTLILSVADTGPGLSKAAVDVLTSADPWSAAQ 438

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +  + V  +  E    +     D  + V+   L 
Sbjct: 439 SAGGLGLWMVRRMVDETSGHIRVRSGDAAHTVIELHLP 476


>gi|156740610|ref|YP_001430739.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus castenholzii DSM 13941]
 gi|156231938|gb|ABU56721.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus castenholzii DSM 13941]
          Length = 516

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 20/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAII 62
           + +  L A+  L + I H++ +P+ AI   L L  E    +      +QL        + 
Sbjct: 276 VRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCPPETPNQHFLQLAEEEIDRIVR 335

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
            L+ +R  +     V + + + ++ +   ++        R+QV         + +     
Sbjct: 336 VLERLRDLYRPRADVFTHVNVNELIESVLLLTGKQLERSRIQVLRELAPDLPAIQGVADQ 395

Query: 117 --KILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             ++LLNL + A  ++P GG + +        + K     ++   G     P++ T+I D
Sbjct: 396 LKQVLLNLVLNAAEAMPNGGTLHVQTYRYHPTEGKGAVAIAITDTGIGIS-PDQLTRIFD 454

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G   +      +  Y    +   +  R+  + I         +L 
Sbjct: 455 GLHTTKERGMGLGLYTSRAIIERHLGRISAQSIPGEGTTFEIVLP 499


>gi|86157005|ref|YP_463790.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773516|gb|ABC80353.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 516

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 33/232 (14%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
           L +  L A+  + ++I H+I +P+ AI  + ELL E               +SAI R   
Sbjct: 278 LRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLVSAISREVD 337

Query: 64  ---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEK 108
                    L+F RL           +   D+ +++   +          RV V      
Sbjct: 338 RLNAVTEEYLRFARL-------PRPQLERHDLNEILGGLLDFLGPELAAARVDVHRALAP 390

Query: 109 IDL-----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     +   + LNL   +  ++P GG V +  +   +     +++       P  
Sbjct: 391 GLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVRVVTRRVDSGAGVEVELGDTGGGIPPG 450

Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             T+I +    +      +   +   +  E+   +  E       V +    
Sbjct: 451 DLTRIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTVFTLRFP 502


>gi|190571272|ref|YP_001975630.1| hypothetical protein WPa_0873 [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
 gi|190357544|emb|CAQ54981.1| Hypothetical protein WP0873 [Wolbachia endosymbiont of Culex
          quinquefasciatus Pel]
          Length = 91

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 18 LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
          L  RI HD  S +  I   LE L+E    +++E + L++ SS   I + K M+ A+
Sbjct: 12 LSGRILHDFASSMQGIVGGLEELEENNPNMQNEALSLLKESSDDLIYKYKVMKQAY 67


>gi|197121029|ref|YP_002132980.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170878|gb|ACG71851.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 516

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 27/229 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
           L +  L A+  + ++I H+I +P+ AI  + ELL E               +SAI R   
Sbjct: 278 LRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLVSAISREVD 337

Query: 64  ---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L+F RL             L +I   + DF+  +           +     
Sbjct: 338 RLNAVTEEYLRFARL----PRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALAPGLP 393

Query: 115 RAK--------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FT 165
             +        + LNL   +  ++P GG VT+  + + +      ++       P    T
Sbjct: 394 GVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPPGDLT 453

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +      +   +   +  E+   +  E       + +    
Sbjct: 454 RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502


>gi|192292456|ref|YP_001993061.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286205|gb|ACF02586.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 444

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 16/203 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    E +++     + +  +          L F+R   G T    +LI
Sbjct: 240 ISHDLRTPITRMRLRAEFIEDDHQRTQTLHDLDQMGAMLTAVLTFLRD--GATRDAPTLI 297

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVT 137
            L    Q+I D  A     +V + G +  +      +  + + NL      ++  G +VT
Sbjct: 298 DLASAMQLITDQFADIG-AKVVYQGPEHAMAMARPGDLHRAVTNLV---ENAVRFGTEVT 353

Query: 138 ISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD---IQFYYVILLAH 191
           I +   +++ I  ++ +G      +K       V G+    +D      +       +A 
Sbjct: 354 IRLALDQDQIIIEVEDDGPGIADADKDSVMQPFVRGDDARNMDDSSSFGLGLSIARAIAR 413

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +   L       H ++    L 
Sbjct: 414 GHGGELSLHTRTPHGLIARITLP 436


>gi|182412767|ref|YP_001817833.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839981|gb|ACB74233.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 926

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 25/186 (13%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           F +  ++ + +L + I HD+ + +  I  +  +L +   +   +++I     SA      
Sbjct: 544 FRVQRLESIGMLAAGIAHDLNNVLAPILLAAPMLRDHATDPGDIRMIATLEKSAERGAAL 603

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLS-RERA---- 116
           +R   G+    D  + +   + ++ D          K +++           +  A    
Sbjct: 604 VRQILGFAHGADGELRVIQPKHLLRDIATFVEETFPKSIKLDSLVPSDLWPVKANATQLH 663

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL + A  ++P GG +T+                G      E     ++G      
Sbjct: 664 QVLLNLCVNARDAMPAGGTLTL---------------RGENCVLDEIAAANIEGASPGAF 708

Query: 177 DSHDIQ 182
               +Q
Sbjct: 709 LVMHVQ 714


>gi|168701206|ref|ZP_02733483.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 590

 Score = 44.9 bits (105), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 68/217 (31%), Gaps = 26/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRL 69
           L + + HD  + +  I  S  LLD           +      A  R        L F R 
Sbjct: 253 LAAGVAHDFNNLLTVIGGSAALLDGPAGRGPNAARLVGEVRFAAERGQWLVRQLLTFARP 312

Query: 70  AFGYTGSVDSLIGL--GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFM 124
                G     +G    D+  ++   +       V    E + +  +R    + LLNL  
Sbjct: 313 Q--AAGREPLDLGRVASDLAPILARVVGPAIETDVDTPAEPVFVLADRGELEQALLNLAT 370

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVESTIDS 178
            A  ++P GG++ + V+   +    ++   G+        R  E F      +V + +  
Sbjct: 371 NARDAMPGGGRLALRVRAGADWVRVAVTDTGSGMPPEVRERIFEPFFTTKGPDVGTGLGL 430

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       +A     R+  E            L +
Sbjct: 431 TTV-----KQVAERCGGRIAVESAPGRGTTFDIDLPR 462


>gi|168698335|ref|ZP_02730612.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 480

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAI----IRL 64
           L AL  L + + H++ +P+ AI ++++L + +       E +  +  S           L
Sbjct: 260 LAALGRLLAGVAHEVRNPLTAIRSTVQLWERLPAAARTPESLAAVVGSVDRINELVGRLL 319

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSRERA-KILL 120
            F R        VD      +  +++    D + V     ++     +  + +   +++L
Sbjct: 320 LFARAGHEARRPVDLNAVTAETLELVRARADALGVALEPDLAPGLPPVPGAAQAVGQVVL 379

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL   A  ++P GG++T   + +      ++   G     PE   +  +    +  D   
Sbjct: 380 NLVTNALQAMPAGGRLTCRTRATGGRVELAVTDTGPGV-PPEARDRAFEPFFTTRADGTG 438

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +A ++   +  +            L 
Sbjct: 439 LGLALCREVARQHGGDVTLDPPGGAGATFRLTLP 472


>gi|218887184|ref|YP_002436505.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758138|gb|ACL09037.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 872

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 24/151 (15%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63
            S  L AL  L + + H+I +P+G I+   +LL     +   +++ +++I   +  A + 
Sbjct: 579 QSEKLAALGQLAAGLAHEINNPLGVINCYAQLLQKTQKDPQAQED-LEVIVQHTQKARLV 637

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------SRERA- 116
           L+ +    G   +  +L G  D+  V+ D +A   RVQ+   G  I+L       R  A 
Sbjct: 638 LQDL---LGLARANRTLTGPSDLNAVLRD-MAQIFRVQLESAGADIELDLARGLPRVAAD 693

Query: 117 -----KILLNLFMVAHASLPRG-GKVTISVQ 141
                +IL NL + A  ++P+G G++ +  +
Sbjct: 694 TTSLEQILTNLLVNAIDAMPQGKGRIRVRTE 724


>gi|85860539|ref|YP_462741.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85723630|gb|ABC78573.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 503

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 20/171 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKF 66
            L AL  L + + HD+ +P+ +I    +LL E           ++LI   +      ++ 
Sbjct: 275 QLKALGYLTATLAHDLGTPLHSIAGMTQLLLERDEWPPDTARKLELILQQTQRLNTVIQN 334

Query: 67  MRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERA 116
           +R A       F    S+     L D   ++E  I   K    VQ++     + +   R 
Sbjct: 335 VRRATRLPEPHF---ESIPVQRLLDDTLPLVEPVIQKSKVELLVQIAPDTPPLYVDNYRV 391

Query: 117 K-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  L NL   A  ++P GGK+ +S + S +    ++ +       P     
Sbjct: 392 QTALFNLIQNALEAMPHGGKIFVSARVSNDRQAIAVTVQDTGPGIPPSMMG 442


>gi|157363248|ref|YP_001470015.1| multi-sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157313852|gb|ABV32951.1| multi-sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 863

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 14/158 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----II 62
            L  L  + +R+ H++ +PI  I   L  L     +    +  + ++     +       
Sbjct: 643 KLALLGEMSARVAHELRNPITVIGGFLNRLKKNISDPQARERYLNILSNEVDNLQNIVSE 702

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAK-I 118
            L+F R A     S   +  L +         A   ++ + +       +   R R K +
Sbjct: 703 ILEFSRSARNIDESKFQINELIEEVAFFMQEKAARNKINLEFMLSPLQEVVADRNRIKRV 762

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           L+NL   A  + P+GG++ +  Q  ++  + S+   G 
Sbjct: 763 LINLVQNAIEATPQGGRIILKSQQDQDRVLVSVFNTGE 800


>gi|86136346|ref|ZP_01054925.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domains [Roseobacter sp. MED193]
 gi|85827220|gb|EAQ47416.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domains [Roseobacter sp. MED193]
          Length = 682

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 26/144 (18%)

Query: 24  HDIISPIGAIHNS-LELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYT 74
           HD  + + A+    LELL +     +  QLI  S   A +R        L F R A    
Sbjct: 322 HDF-NNLLAVTLGNLELLKDEIENLQHKQLIDKSIA-ATLRGSDLTRNMLAFARKA---- 375

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
               S I +  + +  +++I+      +          W  E           LLNL + 
Sbjct: 376 SLEPSPIDINSVVEETKNWISRTLPATIEVKTSLGDGIWPVEAD--PSATESALLNLILN 433

Query: 126 AHASLPRGGKVTISVQDSKNENIF 149
           A  ++P+GGK+T+   + K ++ +
Sbjct: 434 AQDAMPKGGKLTVETANVKIDDSY 457


>gi|168704468|ref|ZP_02736745.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 387

 Score = 44.5 bits (104), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 22/225 (9%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSS- 57
           L +  L A+  L + + H++ +P+      ++LL E  +  E         + LIR    
Sbjct: 163 LRAEQLAAVGRLAAGVAHEVRNPL----TGIKLLVEGALRSESPASLTSEDLDLIRQEIV 218

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDL 111
               +    L F R         D  + + +                +V+++     +  
Sbjct: 219 RMERTVQGLLDFARTPPLECRPHDLRVLVSEAVNRARARAERKPVAVKVELAAAPLPVSA 278

Query: 112 SRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            R++   +L NL   A  + P GG V++ V+ + +        +      PE   ++   
Sbjct: 279 DRDQMLSLLTNLLFNAVDATPTGGNVSVRVEGTPDGPPTVTVNDSGPGIAPEAMGKLFTP 338

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +       +A ++   L      +     +  L +
Sbjct: 339 FATTKPTGTGLGLTVARRIARDHGGTLTATNRPEGGAAFTLTLPR 383


>gi|223938141|ref|ZP_03630038.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893185|gb|EEF59649.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 846

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74
           I HD+ + +  I  + EL+      +E  QLI +   +A          L F R   G  
Sbjct: 473 IAHDLNNMLAPILMTCELMKMELPGEENQQLIAMIEGNAKRGSELVKQVLSFARGVEGCY 532

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129
            S+     + +I  +I +      R+Q       W         +  +++LNL + A  +
Sbjct: 533 LSLQPRHLIREIASIIGETFPKSIRIQTRIAENLWPLSGD--PTQLHQVMLNLSLNARDA 590

Query: 130 LPRGGKVTISVQD 142
           +P GG +TI+ ++
Sbjct: 591 MPSGGDLTITAEN 603


>gi|171915231|ref|ZP_02930701.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 677

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 14/131 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRL-KFMRLAFGYTGSVDS 79
           HD+ + +  I  +++LL     +    +L   I  S+      + + +  A G  G  D 
Sbjct: 319 HDLNNVLSPIMMAVDLLKLNTPDSGSQELLENIATSAKRGADMVGQVLSFARGVEGRRDE 378

Query: 80  LIG---LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHASLP 131
           +     + D+E++I D    + +++ +     W+         +   LLNL + A  ++P
Sbjct: 379 VHAGRLVDDVERIIRDTFPKNIQIRTNVGNDLWSLTGDLTQLHQV--LLNLCVNARDAMP 436

Query: 132 RGGKVTISVQD 142
            GG + ISV +
Sbjct: 437 EGGCIAISVDN 447


>gi|163846537|ref|YP_001634581.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|163667826|gb|ABY34192.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
          Length = 470

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 19/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           L S  L A+  L + + H+I +P+ A  NSL L+++             I    +  I R
Sbjct: 239 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQQELGRIAR 298

Query: 64  L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER 115
           +      F R + G   S +    L +  +++   +  +       ++     I    ++
Sbjct: 299 IITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLPAITAHADQ 358

Query: 116 AK-ILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF-PEKFTQIVD 169
            + + LN+ + A  ++P GG++T+         +     ++ I+       PE    + +
Sbjct: 359 LRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGIAPEHLPHLFE 418

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  ++  R+L +         + LL 
Sbjct: 419 PFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 463


>gi|163848872|ref|YP_001636916.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526828|ref|YP_002571299.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163670161|gb|ABY36527.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450707|gb|ACM54973.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1043

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 18/180 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLK----FMRLAFGY 73
           I HD  + +  I  ++EL       D      ++ +R S+  A   ++    F R   G 
Sbjct: 678 IAHDFNNILTVITGNVELAMLEIAPDHPIYPELESVRQSTARASELVRQLLTFARRQPGQ 737

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASL 130
              ++    + DI  +++  I     +++        +     +  ++L+NL + A  ++
Sbjct: 738 PKPINVNHQINDIMNMLKRIIGEHIHLRLELCEPIDSINIDPHQFEQVLMNLVVNARDAM 797

Query: 131 PRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           P GG++TI       ++ N   FS    G         T I    ++ TI  H  + Y+ 
Sbjct: 798 PNGGELTIRTSMQYVEAGNIPAFSQAKAGKYVLLSVCDTGI---GIDETIRGHIFEPYFT 854


>gi|302381789|ref|YP_003817612.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192417|gb|ADK99988.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 643

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 23/203 (11%)

Query: 20  SRICHDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70
           SR+ H++ +P+ AI        ++       +   +  I  +    +  ++      R+ 
Sbjct: 421 SRMSHELRTPLTAILGFNQLLGMDGETLTDDQRHGVDQISRAGGHLLAMIEEVLDIARIE 480

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERAKILLNLF 123
            G        +    +   + D IA          R++       +   R   +I+LNL 
Sbjct: 481 AGGHALAPVPLDPAPLLADVRDLIAPQAQAAGVEVRIEGDAGLSVLADRRATVQIVLNLL 540

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI------VDGNVESTID 177
             A    P GG VT+++  +       ++  G     PE   ++      +D    S   
Sbjct: 541 SNAIKYGPAGGVVTVTLVGASGRVRIEVRDEGPGV-PPELVDRLFIPFDRLDAERWSGAQ 599

Query: 178 SHDIQFYYVILLAHENKIRLLPE 200
              +       LA      +   
Sbjct: 600 GSGLGLALSRGLARAQGGEVSYH 622


>gi|283852154|ref|ZP_06369427.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572380|gb|EFC20367.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 306

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 25/230 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLI--RLSSMSAI 61
           L S  L A+  L S I H+I +P+  I   L+L+ E    G +     L   R S     
Sbjct: 77  LQSQKLAAIGELSSGIAHEINNPLAIITQELDLVREIAGEGPDVTAADLAEARDSLAEIG 136

Query: 62  IRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKID 110
            ++   RL       +   ++ ++    ++QVIED   + +R         V      + 
Sbjct: 137 RQVDRCRLVTHKLLNFARKMEPVLQEEALDQVIEDMALLAEREAAGRGLAIVRDYAPGLP 196

Query: 111 LSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             R       +++LNL   A A+ P+GG +T+S +  +      ++  G     PE   +
Sbjct: 197 PIRTDVPLLRQVILNLLTNALAATPKGGTITVSTRRDEKTICIEVRDTGCGI-PPENMQK 255

Query: 167 IVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +     +       +       +       L  E         +  L 
Sbjct: 256 IFNPFFTTKEPGKGTGLGLSLAHGIVTRLGGTLAAESRPGQGAAFTVTLP 305


>gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1222

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 69/179 (38%), Gaps = 26/179 (14%)

Query: 18   LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            L S + HD+ + +  I  S+ELL    +   + +++QL+  S+      ++ + L FG  
Sbjct: 846  LASGVAHDLNNVLTPILMSVELLRPLAQNQADRDMLQLLSDSARRGSDIVQQL-LLFGR- 903

Query: 75   GSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDLSRERA------KILL 120
            GS    + L      +   +    R+         V       DL    A      +++L
Sbjct: 904  GSESPRVPLN-----VAGILKDTGRLMRETFPKKIVQTVYAPADLRLVEADRTQIHQVVL 958

Query: 121  NLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFTQIVDGNVESTID 177
            NL + A  ++P GG++ I+ ++ + E   + +    G              G     +D
Sbjct: 959  NLCVNARDAMPEGGRLQITAENVEVEEELAQRHAAKGAGRYVRITVRDTGAGISPENLD 1017


>gi|229592186|ref|YP_002874305.1| putative two-component regulatory system, sensor kinase protein
           [Pseudomonas fluorescens SBW25]
 gi|229364052|emb|CAY51632.1| putative two-component regulatory system, sensor kinase protein
           [Pseudomonas fluorescens SBW25]
          Length = 390

 Score = 44.5 bits (104), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAI----I 62
           S+ +L     + + HD+ +P+ AI+   E L     +     L+R    S   A      
Sbjct: 168 STAELREQFIAVLGHDLRNPLFAINFGAERLLRKFPDPATDTLVRHILTSGRRAAQLVED 227

Query: 63  RLKFMRLAFGYT--GSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            L F R   G     ++    GL +  Q  V E      +RV  +  G+   +S +R ++
Sbjct: 228 LLDFARGRLGSGIPLNIGDCQGLQEALQHVVSEVQSVHPQRVIQADIGDLQGVSGDRDRL 287

Query: 119 LLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKING--NLARFPEKFTQIVDGNVE 173
              L  +   ++  G   G V ++ +  +     S+K  G  +    P  F        +
Sbjct: 288 AQLLSNLVANAIHHGHHDGPVEVTAKIEQGRFNLSVKNPGQIDAQALPRLFEPYSRPAKD 347

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +  Y V  +A  +   L      +H  V +  L 
Sbjct: 348 TPQAGLGLGLYIVKQIADAHGGELSVSTTAEHGTVFTFSLP 388


>gi|21674513|ref|NP_662578.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
 gi|21647705|gb|AAM72920.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 545

 Score = 44.5 bits (104), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 75/192 (39%), Gaps = 21/192 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL-------SSMSAIIR 63
           M+LV  L S I HD  + + AI  + EL L ++   +  +  I         S+      
Sbjct: 167 MELVGQLASGIAHDFNNALAAIIGNTELALKKLDPANPAVSNITDIHTLATRSANLTRQL 226

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKI 118
           L F R        ++    + D  ++ +  I  DK + + W      +       +  +I
Sbjct: 227 LAFARKQMAMPRVLNLTEEVSDCLRLYQRLI--DKNIHLEWHLCDEPIQVKLDPTQLEQI 284

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----ES 174
           L NL + A  ++   G +T+  + ++ E       N  L+  P  + ++   +     E+
Sbjct: 285 LSNLLVNARDAIDGSGCITVRCEGARFEPTDGKTCNPRLS--PGDYARLSITDSGCGIEA 342

Query: 175 TIDSHDIQFYYV 186
           ++  H  + ++ 
Sbjct: 343 SVLPHIYEPFFT 354


>gi|146309133|ref|YP_001189598.1| sensory histidine kinase CreC [Pseudomonas mendocina ymp]
 gi|145577334|gb|ABP86866.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
          Length = 473

 Score = 44.1 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 74/219 (33%), Gaps = 41/219 (18%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM---------------- 67
           H++ SP+ AI  + ELLD   +  E  Q    +      RL+ +                
Sbjct: 265 HELKSPLAAIRGAAELLD-GDMPAEQRQRFVANIQQESARLQNLIERLLHLAQVEQRQGL 323

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             R+A      V+ L+       V     I       +S  GE+  L     + L NL  
Sbjct: 324 EERVAVPLAALVEELLQAQQARIVAAGLRIEPAVPANLSLRGERFLLR----QALANLLD 379

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIV---DGNVEST 175
            A    P GG + I+ +      +  L   G        AR  E+F  +     G   + 
Sbjct: 380 NALDFTPPGGCIRIAAERQGERIVLRLFNQGEAIPEYALARLTERFYSLPRPNGGRKSTG 439

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIID---DHNVVLSA 211
           +  + +Q      +A  +   L    ++   +  ++L A
Sbjct: 440 LGLNFVQ-----EVAELHGGELQIGNVEGGVEARLILPA 473


>gi|283851584|ref|ZP_06368864.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573118|gb|EFC21098.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 383

 Score = 44.1 bits (103), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 62/164 (37%), Gaps = 27/164 (16%)

Query: 24  HDIISPIGAI----HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTG 75
           HD+ +P+ A+       L+  D      + ++LI  +  S +  L       RL  G   
Sbjct: 165 HDLKAPLSALIGLPQVLLDNYDLPDAAADAVRLIEQAGHSMLEMLNQSLVLFRLETGAYV 224

Query: 76  SVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----------ILL 120
              + + L D       ++    +A  ++++VS    +     ER            +L 
Sbjct: 225 LSPTAVDLADLARRTAARMATMPVARGRKIRVS-LAGRPLAPGERLDYSGDVLLLGPMLQ 283

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           NL +    + P GG+VTI +   ++  + ++   G     PE  
Sbjct: 284 NLVVNGLEASPMGGEVTIDLVRDRDRVLVAVTNQGE---VPEPI 324


>gi|212702046|ref|ZP_03310174.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098]
 gi|212674561|gb|EEB35044.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098]
          Length = 573

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 27/220 (12%)

Query: 18  LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVMQLIR---------LSSMSAIIRL 64
           L + + H++ +P+  I+      L+LL   G  +   +LI            +     RL
Sbjct: 348 LAAGVAHEVNNPLAVINEKAGLGLDLLHMSGNFERKERLISLLEAIESTVERARGITHRL 407

Query: 65  K-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLS-----RER 115
             F R       +    + + ++      F+    +   V +     +          + 
Sbjct: 408 LGFAR----RMEANRQELSVPEVLTETMGFLERGAKNRGVTIGTDFAEGLPDIVSDRGQL 463

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ LN+   A  ++P GGKV I+   + +  +     +      PE    I +    + 
Sbjct: 464 QQVFLNIMGNALDAVPDGGKVDIACSQTADGGLLVRVTDNGKGMSPEVIKHIFEPFYSTK 523

Query: 176 ID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  + +  +    +       +  +  +     +S  L 
Sbjct: 524 KEKGNGLGMFITYGIVRRLGGEITVDSTEGKGTTVSITLP 563


>gi|9662894|emb|CAC01288.1| Blr Regulon Signal Sensor [Aeromonas hydrophila]
          Length = 473

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 16/207 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIR-LKFMRLAFGYTGS 76
           H++ SP+ AI  + E+L E    +        + L        I R L+  +L  G    
Sbjct: 265 HELKSPLAAIRGAGEILAEAPPPEVATRFIGNINLETARMQQLIERMLQLAKLESGQGLD 324

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL------NLFMVAHASL 130
             ++       +V++    + +R QV+   E  +  +++   LL      NL   A    
Sbjct: 325 RQAVEPARLGRRVLDARQILAQRRQVTLVAELGEAQKQKWDSLLVEQALGNLLDNALDFS 384

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           P GG + +S    +    F ++  G        P  F +           S  +   +  
Sbjct: 385 PIGGTLALSGAMEEGGYCFRVRDQGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFAT 444

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +A ++  RL      D  V+    L 
Sbjct: 445 EVARQHGGRLTLANQPDGGVLAELWLP 471


>gi|222081275|ref|YP_002540638.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221725954|gb|ACM29043.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 625

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 10/130 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78
           + HD  + +  I  +LE+++    + +++ L+  +  +A    +L    LAFG       
Sbjct: 264 LAHDFNNLLTVISGNLEMIEARLQDPKLLSLVLEAQAAADDGAKLTGQLLAFGRRQPLNP 323

Query: 79  SLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLP 131
            L+ +G +     D +        + R  V+ +  +  +   + +  LLNL + A  ++P
Sbjct: 324 KLVDIGQLVSSFSDLLRRTLGETIELRTVVTGSMNEALVDGSQLQNALLNLVLNARDAMP 383

Query: 132 RGGKVTISVQ 141
           RGG ++I + 
Sbjct: 384 RGGFLSIEIS 393


>gi|218886793|ref|YP_002436114.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757747|gb|ACL08646.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 591

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 75/210 (35%), Gaps = 23/210 (10%)

Query: 18  LCSRICHDIISPIGAIHN-SLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRL 69
           L + + H+I +P+ AI   +  LL    +++     +Q+I   S      LK    F R 
Sbjct: 361 LSTYVAHEIRNPLFAIGGFANSLLRSPSLDEAARGKVQVILEESRRLDTILKSILNFAR- 419

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERA------KILL 120
               T      + L  + +   + +++    +R+ V       D+ +         + L+
Sbjct: 420 ---PTSPRTGEVDLNLLARQTMELMSMGFDQRRITVDMQLAP-DIPKAHGDGEMLKQCLI 475

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL   A  ++P GG++T+    ++     ++   G     PE   +I      +      
Sbjct: 476 NLVKNAQEAMPAGGRLTVRTGMNQQHVHIAVADTGVGI-PPELHDKIFSPFFSTKEKGAG 534

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           I       +  E   R+  +        ++
Sbjct: 535 IGLAMSRKIIEEMGGRVDLQSQVGKGTTIT 564


>gi|229917600|ref|YP_002886246.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469029|gb|ACQ70801.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 422

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 71/192 (36%), Gaps = 20/192 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYT 74
           S + HD+ +P+  + N  ELL+   + +  M     S    + R+     + +  +    
Sbjct: 220 SGVTHDVRTPLAIVRNEAELLELGVVHETEMATTGKSITEEVDRIDRLVNQMLEYSKLSA 279

Query: 75  GSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125
           GS+   +    ++++I             K V +    EK+ +  +R    ++L N    
Sbjct: 280 GSIPLEMESIQLDELIRRLTPRMSEWFRQKDVTLDLRLEKVSIQADRLAMERVLSNFIRN 339

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-DGNVESTIDSHDIQFY 184
           A+ + P GG +TIS+  ++     + +  G           +   G+  +    H +   
Sbjct: 340 AYEASPVGGNITISLTSNR--LEVTDEGKGIDPTIQHSIWDMYVKGDRSN---GHGLGLA 394

Query: 185 YVILLAHENKIR 196
              LL     + 
Sbjct: 395 ITKLLLDAQGLS 406


>gi|258405276|ref|YP_003198018.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797503|gb|ACV68440.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 758

 Score = 44.1 bits (103), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 15/142 (10%)

Query: 22  ICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73
           + HD  + + AI  +L+LL     E   + + +  IR S   A   ++    F R A   
Sbjct: 385 LAHDFNNLLHAIRGNLDLLGHNKPEAHPDQQRLATIRSSIRRAERLVQQLLLFSRKA--D 442

Query: 74  TGSVDSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128
           +   +  I   + +  +++E  I     ++++       +  +  ++   +LNL   A +
Sbjct: 443 SRKQNQDINQVVQESARMLESSIPKMIEIELTLGQGLPLVYADIVQVEQVVLNLGRNAES 502

Query: 129 SLPRGGKVTISVQDSKNENIFS 150
           ++P+GG++TI    ++ +  F 
Sbjct: 503 AMPQGGRLTIETHYAELDEEFV 524


>gi|222524324|ref|YP_002568795.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|222448203|gb|ACM52469.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 482

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 82/225 (36%), Gaps = 19/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           L S  L A+  L + + H+I +P+ A  NSL L+++             I    +  I R
Sbjct: 251 LQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQQELGRIAR 310

Query: 64  L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER 115
           +      F R + G   S +    L +  +++   +  +       ++     I    ++
Sbjct: 311 IITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLPAITAHADQ 370

Query: 116 AK-ILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF-PEKFTQIVD 169
            + + LN+ + A  ++P GG++T+         +     ++ I+       PE    + +
Sbjct: 371 LRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGIAPEHLPHLFE 430

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  ++  R+L +         + LL 
Sbjct: 431 PFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 475


>gi|222053640|ref|YP_002536002.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221562929|gb|ACM18901.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 482

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 22/217 (10%)

Query: 18  LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L S I H+I +P+  I  ++     ELL       + ++ I  +    + +  +M L F 
Sbjct: 256 LASGIAHEIRNPLNYISLAIDHLKSELLPTCPERSKELEAITDNIKEEVRKANYMVLNFM 315

Query: 73  YTG-------SVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------ 118
             G       S      L G    +++D +  ++R++V+      DL   +         
Sbjct: 316 NYGRPLKLRTSEVRYADLIGKALPLLQDKL-DEQRIRVAMDIP-ADLPAMQVDAELMRNC 373

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTID 177
           L N    A  ++P GG +T+    +  E  F L      A        +I      +   
Sbjct: 374 LFNFITNAAQAMPEGGTITLGAAFAPEEKRFILTFADQGAGIAAGDIGKIFQPYFTTKEA 433

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +  E+   L            + +L 
Sbjct: 434 GIGLGLAITERIVREHGGELRVNSTVGSGTTFTMVLP 470


>gi|220908951|ref|YP_002484262.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865562|gb|ACL45901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1428

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 26/143 (18%)

Query: 18   LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------LKFMR 68
            L S I HD+ + +  I  S +LL     E    +L++   M A  R         L F R
Sbjct: 1066 LASGIAHDLNNMLTPILVSSQLLQRQLPEGRPQELLK--IMEANARRGADLIRQVLTFAR 1123

Query: 69   LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---L 119
                  G+    + L       +I+Q+ E       R+ +    +   +S +  ++   L
Sbjct: 1124 ------GTEGKRMPLQIKHLLTEIQQICERTFPKSIRIALDIPADLAMISVDPTQLHQVL 1177

Query: 120  LNLFMVAHASLPRGGKVTISVQD 142
            +NL + A  ++P GG++ +   D
Sbjct: 1178 MNLCVNARDAMPEGGQLNLRAAD 1200


>gi|162147356|ref|YP_001601817.1| two-component sensor histidine kinase, sensor protein kdpD
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785933|emb|CAP55509.1| putative two-component sensor histidine kinase, sensor protein kdpD
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 894

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 52/162 (32%), Gaps = 17/162 (10%)

Query: 16  ALLCSRICHDIISPIGAI---HNSLELLD---EVGIEDEVMQLIRLSSMSAI----IRLK 65
           ALL S I HD+ +P+ +I    +SL+  D   +     E++  IR  +          L 
Sbjct: 669 ALLSS-ISHDLRTPLSSILGAASSLDSYDALLDKKDRKELLTTIREEAERLSRFVANLLD 727

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119
             RL  G          LG++          I    RV +    +   +  +     + L
Sbjct: 728 MTRLEAGALTPARQPCDLGEVAGSALARASVILRHHRVSLKVAPDLPLVPLDDVLVEQAL 787

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            N+   A    P G  V I +          L   G      
Sbjct: 788 FNILDNAAKYTPEGSMVMIEIAQKGGSLRLRLTDEGPGLPAD 829


>gi|146275720|ref|YP_001165880.1| PAS/PAC sensor hybrid histidine kinase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|145322411|gb|ABP64354.1| PAS/PAC sensor hybrid histidine kinase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 632

 Score = 44.1 bits (103), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVD---S 79
           HD  + + A+   + LL+     D++   +      A  R  + +R    +    +    
Sbjct: 289 HDFNNVLAAVLGGITLLERKAPLDDLGHRLTEQIRLAAERGAELVRRMMAFARKQELKPV 348

Query: 80  LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL----SRERAKILL-NLFMVAHASLPR 132
            +    + + +   +       V +SW     DL     R + ++ L NL + A  ++P 
Sbjct: 349 YLAPSAVREAVSGLVEQTLGGTVTLSWDCADTDLVFHADRSQLELALVNLVINARDAMPE 408

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           GG + +++  + + +   +++            +
Sbjct: 409 GGSIHVAIAPAADADRLRIEVRDEGTGIAPGVLE 442


>gi|209883698|ref|YP_002287555.1| PAS/PAC sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
 gi|209871894|gb|ACI91690.1| PAS/PAC sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
          Length = 534

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 25/172 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + A+  SLEL+ +   +D  +     +++    R        L F R     
Sbjct: 161 IAHDFNNLLMAVMGSLELMRKRLPDDPKLHTFLENALQGARRGATLTQRMLAFAR----R 216

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-------ILLNLFMVA 126
              V   I +  + + + D +       ++   +   +              LLNL M A
Sbjct: 217 QDLVQEAIDIPALVRGMTDLLQRSLGPTINIQTQFPLVMAPAFADFNQLEMALLNLAMNA 276

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
             ++P+GG+V IS ++       ++  N  L   P  +  +   +  + +D+
Sbjct: 277 RDAMPKGGEVIISAREE------TITENNRLRLPPADYVCLSVQDAGTGMDA 322


>gi|218779811|ref|YP_002431129.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761195|gb|ACL03661.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 495

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 23/221 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM---SAII 62
           +  L +L  + + + H+I +P+G I +S ELL    +      +  +I  S+        
Sbjct: 270 AERLASLGEMAAGVSHEIRNPLGIIRSSAELLGKRYDGPNRQLLEVIIEESTRLNDIITD 329

Query: 63  RLKFMRLA---F---GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDLSR 113
            L F R     F      G +   +         + +    +      + W    +    
Sbjct: 330 FLNFARPTEPRFQECSVAGVLGKNLAFLAPRLNQDGYHVEQEAPSDLPMVWADPNLLY-- 387

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              +  LN+ + A  ++P GG V +  +    +   S    G      E   +I +    
Sbjct: 388 ---QSFLNILINAMQAMPAGGTVHVKTRIQGEKLSVSFTDEGKGV-TDEAMKKIWNPFFT 443

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +   +   +  E  +D    +   L 
Sbjct: 444 TKERGTGLGLCVVRNIIEAHGGSVTIENSEDKGACVRVELP 484


>gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 645

 Score = 44.1 bits (103), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 59/138 (42%), Gaps = 14/138 (10%)

Query: 18  LCSRICHDI---ISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK----FM 67
           L S I HD+   ++PI  I   L  +    I++   +L+     +S      +K    F 
Sbjct: 275 LASGIAHDLNNILTPILGIAQILP-MKFPDIDERTRELLKILEDNSKRGSALIKQVLSFA 333

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFM 124
           R   G    +     L +I+Q++         ++ + + +   +  +  ++   L+NL +
Sbjct: 334 RGLEGKHSILQVNYLLSEIQQMMRQTFPKSIEIRTNISPDLRPVRGDTTQLHQVLMNLVL 393

Query: 125 VAHASLPRGGKVTISVQD 142
            A  ++P GG +T+  ++
Sbjct: 394 NARDAMPNGGILTLGAEN 411


>gi|220926384|ref|YP_002501686.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219950991|gb|ACL61383.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 660

 Score = 43.7 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 41/196 (20%)

Query: 51  QLIRLSSMSAI--IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVD 97
           QLI  S  +A     L    LAF      +   G  D+ +++              I V 
Sbjct: 322 QLIENSIQAAERGATLTKRMLAF--ARRQELTTGPLDVPELVRGMADLLQRSIGPNIQVG 379

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            R  +       D ++     LLNL + A  ++P+GG +TI+    + E + + +I G  
Sbjct: 380 TRFPLQLPLASADPNQLEL-ALLNLAVNARDAMPQGGTITIAA---QEERVGTSEIAGLA 435

Query: 158 ARFPEKFTQIVDGNVESTID----SHDIQFYYV---------------ILLAHENKIRLL 198
              P ++ Q+   +    +D    +  ++ ++                   A ++  RLL
Sbjct: 436 ---PGRYVQLSVTDTGEGMDERTLAQAVEPFFTTKGVGKGTGLGLSMVHGFAEQSGGRLL 492

Query: 199 PEIIDDHNVVLSALLE 214
                         L 
Sbjct: 493 LRSTKGQGTTAELWLP 508


>gi|254425627|ref|ZP_05039344.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188050|gb|EDX83015.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1428

 Score = 43.7 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 26/152 (17%)

Query: 18   LCSRICHDI---ISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIR----LKFM 67
            L S I HD+   ++PI  +   L  +     +D     +QL++ S+          L F 
Sbjct: 1064 LASGIAHDLNNILTPIYGVAQ-LLSMQLPDADDPIRQQLQLLKTSAKQGSRMVNQVLSFA 1122

Query: 68   RLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
            R      G       L       ++             +  +   +   ++ +     + 
Sbjct: 1123 R------GKEGDRAPLAIKHLIVELRNFATQTFPKSLTITANIPNDLRMVNADATHLYQA 1176

Query: 119  LLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
            L+NL + A  ++P GG++T+S  +   +  F+
Sbjct: 1177 LMNLLVNARDAMPNGGQLTLSAVNLDLDEAFA 1208


>gi|197118651|ref|YP_002139078.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088011|gb|ACH39282.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 661

 Score = 43.7 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----II 62
            L A+  L + + H+I +P+  I  + ELL     E+    E +  I             
Sbjct: 438 KLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEEAPIREEVDTIFQQVKRVERIVSN 497

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKI 118
            LKF R      G+V     L +I   I   ++++ R++++    +         ++ + 
Sbjct: 498 LLKFARREQMEAGAVRLNELLHEIVGQIGHQVSLE-RIEIAEQYAESVAQVEGDADQLRQ 556

Query: 119 LL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTI 176
           +  NL + A  ++P GG +++  Q  +    + +K+         E   Q+ +    +  
Sbjct: 557 VFTNLVLNAVQAMPSGGVLSVRTQQVEPAGSYEVKVGDTGVGIALENLRQVFNPFYTTKA 616

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  E+  R+  E +       + +L +
Sbjct: 617 NGTGLGLSVSYGIVREHGGRIDVESVPGGGSTFTVVLPR 655


>gi|268317955|ref|YP_003291674.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
 gi|262335489|gb|ACY49286.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
          Length = 647

 Score = 43.7 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           L S + HD+ +    I   + +L     +       + +I+ S+      ++ + LAF  
Sbjct: 266 LVSGMAHDLNNLFVPILLGVRMLAQDTLDPEKRARALGMIQRSAERGADLVRQV-LAF-A 323

Query: 74  TGSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFM 124
            G     + L       ++  ++ +      R++         +  +  ++   L+NL +
Sbjct: 324 RGMEGERVPLDVRTIVQEVAHLLRETFPSTIRIETRLDDALWPVQGDATQLQQVLMNLCV 383

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKI 153
            A  ++P GG++ ++ ++ + +  ++ ++
Sbjct: 384 NARDAMPEGGRLLLAAENVEVDPHYARRV 412


>gi|253702488|ref|YP_003023677.1| histidine kinase [Geobacter sp. M21]
 gi|251777338|gb|ACT19919.1| histidine kinase [Geobacter sp. M21]
          Length = 468

 Score = 43.7 bits (102), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 34/223 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQL------IRLSSMSAII------ 62
           L + I H+I +P+  I  +++ L         ++  +L      I+     A        
Sbjct: 250 LAAGIAHEIRNPLNYISLAIDHLKSESLPSCPEKAKELESIANNIKEEVRKANYMVLNFM 309

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLS 112
                 +L+  R+ +        L+      Q+++D +        R    +    +   
Sbjct: 310 NYGRPLKLRLQRVCY------PELVDK--AMQLMKDRLDERGIEVVRDIPEYLPPMLADP 361

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGN 171
                 L N    +  ++P GGK TI    +     F L  +   +   P+   ++    
Sbjct: 362 ELMRNCLCNFISNSTQAMPEGGKFTIGASIAPETGEFRLTFSDEGSGIEPQDLEKVFQPY 421

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +  E+   +  +         S  L 
Sbjct: 422 FTTKEAGIGLGLAITERIVREHGGGIAVQSTKGEGTTFSVTLP 464


>gi|294013096|ref|YP_003546556.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292676426|dbj|BAI97944.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 451

 Score = 43.7 bits (102), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 13/199 (6%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           HD+ +P+ ++    E +++ G    + + I   +      L   R   G +      + L
Sbjct: 257 HDLRTPLASLRVRAESVEDEGERARMSETIDEMNRMLEDILSLARA--GRSSEARQKVDL 314

Query: 84  GD-IEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140
               + V+EDF+ +   V ++ +         ++  + L NL      ++  G +  +SV
Sbjct: 315 SALADAVVEDFLELGSPVDLADSERVVADVRPQQIRRALRNLI---ENAIVYGERAHVSV 371

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKI 195
           + +       +  +G           +     ++G+         +    V  +  E+  
Sbjct: 372 ERADGAIRLIVADDGPGISEERMEEMMEPFTRLEGSRNRDTGGAGLGLALVRAIMIEHGG 431

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L         +  S +L 
Sbjct: 432 ALKLANRAQGGLEASLVLP 450


>gi|226940498|ref|YP_002795572.1| KdpD [Laribacter hongkongensis HLHK9]
 gi|226715425|gb|ACO74563.1| KdpD [Laribacter hongkongensis HLHK9]
          Length = 877

 Score = 43.7 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59
           +A++   ++    +   L S + HD+ +PI AI   L    E  + D   Q +  +    
Sbjct: 639 VAQDALVSMEGERMRNTLLSAVSHDLRTPITAI-AGLAGTLEKKLADPAQQELAHAIHGE 697

Query: 60  -------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTG 106
                      L   RL    +G V   +    +E+V+   +           VQV+   
Sbjct: 698 ATQMNRLVSNLLDMARL---QSGGVKLRLDWQSLEEVVGSALGQLRPVLARHPVQVALPA 754

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
           E   L  +     ++L+NL   A    P G  + IS +         +   G     P  
Sbjct: 755 ELPLLEFDALLIERVLVNLLDNAAKYTPVGSGIRISARLDNGWLRLRVDDEGPGLPEPAE 814

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F   V G  ES      +      L+   +   +  E   +        L 
Sbjct: 815 SLFQPFVRGVRESATSGAGLGLALCRLIVEAHGGTIATENRHEGGARFVVALP 867


>gi|297570384|ref|YP_003691728.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926299|gb|ADH87109.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 567

 Score = 43.7 bits (102), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 19/185 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL- 55
           K       +  L A+  L + + H++ +P+ +I     LL    +    + E +++I   
Sbjct: 326 KKAQMLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLIKDDNLTSAQQERLEIIAEQ 385

Query: 56  ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKI 109
              SS      L F R A    G       L  I +     +  D   +R+++    + +
Sbjct: 386 TRRSSTIIKALLSFAREA-RQPGRTRQACDLNGIIEKAIPLLTTDLEKRRIELELELQPL 444

Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   E  ++++NL +    ++ + G++ +S    +   +  +  NG     PE  +
Sbjct: 445 PPVIADPGELEQVVINLVLNGMQAIGQEGRIRVSTSTQEQNVLLQVADNGPGI-TPEHRS 503

Query: 166 QIVDG 170
           +I D 
Sbjct: 504 RIFDP 508


>gi|262199743|ref|YP_003270952.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083090|gb|ACY19059.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 906

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 16/154 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGYTG 75
           H++ +P+ +I  ++ELL+     D  +Q I  S        +      L   RL  G   
Sbjct: 551 HELRNPLSSIRAAVELLELGPTSDVDLQRIHKSLMRQTSHMAKLVDGLLDVSRLELGRIT 610

Query: 76  SVDSLIG-LGDIEQVIEDFI----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
               ++   G +  V++D++       + +  S   E + +S + A++   L NL   A 
Sbjct: 611 LERQVLDIRGLVSDVLQDYLVSIKERGQTLHSSIATEALPVSCDPARLSQILDNLLANAM 670

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              PR G +T+++Q  K E + +++  G      
Sbjct: 671 QFTPRDGIITVNLQRGKGEAVLTIRDTGAGIAPD 704


>gi|196228647|ref|ZP_03127513.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226928|gb|EDY21432.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 882

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 22  ICHDIISPIGAIHNSLELL-DEVGIEDEV--MQLIRLSSMSAIIRLK----FMRLAFGYT 74
           I HD+ + +G I  ++E++ ++         ++L+  S+      +K    F R   G  
Sbjct: 527 IAHDLNNVLGPIMMAVEVIQNDPRNPGNKGLLELVGTSAKRGSELVKQILSFARGIDGEK 586

Query: 75  GSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERA-KILLNLFMVAHASLP 131
             +     + ++ ++  D    D   R +V+    +++    +  +ILLNLF+ A  ++ 
Sbjct: 587 TILKMPQLVSEVVKLASDTFPRDITVRSKVAENLPQVEGDATQMHQILLNLFVNARDAMT 646

Query: 132 RGGKVTISV 140
           RGG ++I V
Sbjct: 647 RGGSISIDV 655


>gi|239907953|ref|YP_002954694.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239797819|dbj|BAH76808.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 821

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 79/210 (37%), Gaps = 13/210 (6%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L + + H+I +P+G I    ELL +  ++ + +  + +    A++  K +R    +    
Sbjct: 601 LAAGLAHEINNPLGVIACYAELLRQSLVDPQALDDLAVIERHAVMAKKVLRDLLDFARPR 660

Query: 78  DSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKI-DLSRERA----KILLNLFMVA 126
            +  G  DI+ ++          A  +R  +     +   L++  A    ++L NL + A
Sbjct: 661 PAKPGPCDIKALLSGLARIFEVQAQSRRSSLRLDVPEGIPLAKADAGALEQVLSNLLLNA 720

Query: 127 HASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQFY 184
             ++  G G++T++   S++    +L +  N    P      I D    +          
Sbjct: 721 LDAVEPGQGRITLAAAASEDGGQVNLTVADNGPGIPAVDLPHIFDPFFTTKEAGRGTGLG 780

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +    E  +D   V +  L 
Sbjct: 781 LAVAFGLMRDMGGTIEAQNDGGAVFTLTLP 810


>gi|145301167|ref|YP_001144008.1| sensory histidine kinase CreC [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853939|gb|ABO92260.1| two-component system blr regulon sensor histidine kinase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 480

 Score = 43.7 bits (102), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 16/207 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIR-LKFMRLAFGYTGS 76
           H++ SP+ AI  + ELL E    +        + L        I R L+  +L  G    
Sbjct: 265 HELKSPLAAIRGAGELLAEAPPPEVARRFIGNINLETARMQQLIERMLQLAKLESGQGLD 324

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------AKILLNLFMVAHASL 130
             +       ++V++    + +R QV+   E  D S+++       + L NL   A    
Sbjct: 325 RQATEPARLGKRVLDARQIIAQRRQVTLVAELADASKQKWDPLLVEQALGNLLDNALDFS 384

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           P G  V ++ +   +   F ++  G        P  F +           S  +   +  
Sbjct: 385 PAGSTVRLTGEMHADGYRFQVRDQGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFAT 444

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +A ++  RL      +  V+    L 
Sbjct: 445 EVARQHGGRLNLCNQPEGGVLAELWLP 471


>gi|56709140|ref|YP_165185.1| sensor histidine kinase [Ruegeria pomeroyi DSS-3]
 gi|56680825|gb|AAV97490.1| sensor histidine kinase [Ruegeria pomeroyi DSS-3]
          Length = 456

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIG 82
           HD+ SP+ A+    E +++    D ++  I          L F R   G         + 
Sbjct: 263 HDLRSPLTAMRVRSEFVEDDETRDSMIASIEEMQHMVEETLSFAR---GLADGEPLQSVE 319

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           LG   + +   +     +      E         + L NL      +   G +  +S   
Sbjct: 320 LGAFLKTLRQDMPDGFTLAQGERIEVPLRPNAMRRALRNLI---ENAQRYGSEAEVSFAR 376

Query: 143 SKNENIFSLKINGNLARFPEK 163
           ++   +  +   G     PE 
Sbjct: 377 TRGGAVIRVCDRGPGIPEPEL 397


>gi|91203465|emb|CAJ71118.1| similar to two-component sensor histidine kinase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 384

 Score = 43.7 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 11/159 (6%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL S + H++ +P+  I    ELL E   +++ +  I+  S       K  R    ++  
Sbjct: 171 LLASSLAHELDTPLATISGYCELLLEEVHDEKALGKIKTISDQIARCQKATRNLLIFSRK 230

Query: 77  VDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRERAK-ILLNLFMV 125
            DS      I  +I   +A          ++ R         + +   + + ++LNL   
Sbjct: 231 SDSEKKEYHINTLITTILALVEHRLKIHKINIRRAFDKQLPPLLVEGNQIQQVILNLVNN 290

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +  +LP GG + I  + +  E    +    N    PEK+
Sbjct: 291 SVDALPNGGDLFIKTRMNNAEKSVEIVFEDNGTGIPEKY 329


>gi|219847337|ref|YP_002461770.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541596|gb|ACL23334.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 793

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 11/129 (8%)

Query: 22  ICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73
           I HD  + +  I  S+EL    +D        ++ IR S+  A   ++    F R   G 
Sbjct: 430 IAHDFNNILTVITGSVELAMLEIDSDHAIYPELEAIRQSAARAGELVRQLLTFARRQPGQ 489

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDL-SRERAKILLNLFMVAHASL 130
              VD    + D   ++   I      ++Q+    E++ +   +  ++L+NL + A  ++
Sbjct: 490 PQLVDVNRQINDTMNMMRRLIGEHIQLQLQLDEHIERVMIDPAQLEQVLINLVVNARDAM 549

Query: 131 PRGGKVTIS 139
           P GG++TI 
Sbjct: 550 PNGGELTIR 558


>gi|94263431|ref|ZP_01287244.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93456161|gb|EAT06300.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 569

 Score = 43.4 bits (101), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 74/214 (34%), Gaps = 17/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR----LKFMRL 69
           + + I H+  +P+ AI  S +LL     E   +++++Q+I              L F R 
Sbjct: 345 MAAGIAHEFRNPLAAISGSTQLLAQRLKEQPGQEQLLQIINRECDRLEAAVNDFLLFSRP 404

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAK-ILLNLFMV 125
           A            L +   VI    A  ++ + +W      +     ++ K +L+NL   
Sbjct: 405 ASPRPQWHHLQQLLDESLAVIRQTPAWSQQHRFTWDLPADPMVWADGDQLKQVLINLLAN 464

Query: 126 AHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHD 180
           A  ++P GG +  +               ++I+ +     PE   +I +    +  D   
Sbjct: 465 ACQAMPSGGTIHGAAHRRQPGDGQSPGLVIEISDDGPGIAPESQARIFEPYFTTRQDGTG 524

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  +   +   +            + LL 
Sbjct: 525 LGLAIVHQIIKGHGGEIELASTPGQGTTFTILLP 558


>gi|259419177|ref|ZP_05743094.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259345399|gb|EEW57253.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 769

 Score = 43.4 bits (101), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77
           HD  + + AI    +LL    + G +D    LI+   ++  A   +  + LAF       
Sbjct: 405 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAAALVSQL-LAFSRKQTLQ 462

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130
             ++ + +    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++
Sbjct: 463 PEVLDVRETLSDLTHLLNRLVGEKVSLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 522

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYY 185
           P GG++ +  +    +              P ++  I   +  + I    +Q     FY 
Sbjct: 523 PHGGEIRVETEVVALDTALE---RDRAVVPPGEWVTIQVSDEGTGISPDKLQKVFEPFYT 579

Query: 186 VILLAHENKIRLLP 199
                    + L  
Sbjct: 580 TKRTGEGTGLGLST 593


>gi|312891708|ref|ZP_07751217.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295791|gb|EFQ72951.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 447

 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 23/160 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---------------I 62
           L S I HD+ SP+G I N LELLDE  ++ E  ++I    +                   
Sbjct: 226 LMSIIAHDLRSPLGNIQNYLELLDEYSLDAEERKIIEKDLLKLTQDTTSMLSKVLSWSKA 285

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-- 120
           ++  + +        ++L    ++E+ I       K + +S+  E+         +L   
Sbjct: 286 QMDGVTVKLNSVNLFEALANTLELEKAIAG----KKGIALSYGVEQTIKIMADVDMLQLI 341

Query: 121 --NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             NL   A    P GG++ IS     N  +  +K  G   
Sbjct: 342 VRNLINNAIKFTPAGGEIEISASSIHNNCLLMVKDTGTGI 381


>gi|253700575|ref|YP_003021764.1| histidine kinase [Geobacter sp. M21]
 gi|251775425|gb|ACT18006.1| histidine kinase [Geobacter sp. M21]
          Length = 661

 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 80/218 (36%), Gaps = 15/218 (6%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----II 62
            L A+  L + + H+I +P+  I  + ELL     ED    E +  I             
Sbjct: 438 KLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEDAPIREEVDTIFQQVKRVERIVSN 497

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KI 118
            LKF R      G+V     L +I   I   ++++    V    E +      A    ++
Sbjct: 498 LLKFARREQMEAGTVRLNELLHEIVGQIGHQVSLEGIEIVEQYAESVAQVEGDADQLRQV 557

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTID 177
             NL + A  ++P GG +++  +  + E  + +K+         E   Q+ +    +  +
Sbjct: 558 FTNLVLNAVQAMPAGGVLSVRTRPLEPERSYEVKVADTGVGIALENLRQVFNPFYTTKAN 617

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +       +  E+   +  E + D     + +L +
Sbjct: 618 GTGLGLSVSYGIVREHGGLIDVESVPDGGSTFTVVLPR 655


>gi|193212432|ref|YP_001998385.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085909|gb|ACF11185.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 798

 Score = 43.4 bits (101), Expect = 0.021,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 92/216 (42%), Gaps = 27/216 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++I   +  M+L+  L   I HD  + +G I  + EL       +  +E+ + ++ R + 
Sbjct: 417 QSILLQIQKMELIGQLAGGIAHDFNNMLGVIMGNTELAMCNDGLDPSVEENLAEIYRAAE 476

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKI--- 109
            SA +  +   LAF       ++  + +++Q I D +A+      K++   W        
Sbjct: 477 RSAEMTSQL--LAF--ARKQTAVPSVFEVDQAIGDSLAILQRVVGKKIGFDWHPSGAGCK 532

Query: 110 --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 +  +IL+NL + A  ++  GG+ TI ++  + +   +L+  G   R P ++ QI
Sbjct: 533 VRVDPSQFDQILMNLCLNASDAM--GGEGTIVIKAKRLKVDHTLEHPG-GIREPGEYVQI 589

Query: 168 VDGNVESTI-DSHDIQ----FYYVILLAHENKIRLL 198
              +    I + H +     F+   +L     + L 
Sbjct: 590 SVSDSGQGIPEEHQLHIFEPFFTTKVLGKGTGLGLS 625


>gi|308271006|emb|CBX27616.1| hypothetical protein N47_H24380 [uncultured Desulfobacterium sp.]
          Length = 575

 Score = 43.4 bits (101), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 24/222 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL---- 64
           S  L +L  L + I H+I +P+ +I   L        E E  + I    +  + RL    
Sbjct: 354 SQRLASLGSLAAGIAHEIRNPLSSIK-GLATYFIEHNEKEEDKDIAKIMIQEVDRLNRVV 412

Query: 65  -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKI--DLSR 113
            + + LA      V        ++ VIED I + KR        + +    E+I   L +
Sbjct: 413 SQLVELA----RPVSISKKPAPLKSVIEDSIKLLKREALEKNIKITIHIPPEEIQIALDK 468

Query: 114 ERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +R  ++LLNL++ A  S+ +GG++++ V       I  +   G+  +  E    + D   
Sbjct: 469 DRITQVLLNLYLNAIESMEKGGRLSVDVSKKDKGAIIKVSDTGSGIK-KEDLALVFDPYF 527

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +   +  ++  +       V +  L 
Sbjct: 528 TTKSTGTGLGLAIVYNIIEAHGGKITVQSRPGQETVFTIFLP 569


>gi|254489488|ref|ZP_05102691.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
 gi|214041995|gb|EEB82635.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
          Length = 516

 Score = 43.4 bits (101), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 26/159 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA------IIRLKFMRLAFGYTG 75
           I HD  + +  I  +LELL+  G   + + LIR +  SA        RL           
Sbjct: 148 IAHDFNNLLTVIVGNLELLEMRGANPQQLALIRDALESAELGADLTSRLMIF------AR 201

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKI---LLNLFMV 125
                    D+ QV  D +A+ +R       +++ +      +  +  ++   ++NL + 
Sbjct: 202 KSHLKPERSDLRQVCSDTLALLERTVGATFDIKIDFAENLDTVMIDPVQLKSAVMNLALN 261

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKIN----GNLARF 160
           A  ++   G++ +S+Q+   ++ F  +      G+  R 
Sbjct: 262 ARDAMGTSGELLVSLQNVTIDDTFMAEETDMEAGDYVRL 300


>gi|226228576|ref|YP_002762682.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226091767|dbj|BAH40212.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 423

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 10/151 (6%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLKFMRL 69
           +LVA + + + HDI + +  + +S ++LD   ++DE  ++   IR     A   ++ + L
Sbjct: 205 ELVAAMAAGMAHDIANVVQVMTSSADMLDGHELDDETRRVVSDIRTVGAQASATVRTL-L 263

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLF 123
           A G     D           +   +      +++   E    ++  A      + ++NL 
Sbjct: 264 AMGRQQVEDEDGAAPFGLDRMTHLLRALVGRRITLVVEDGARNKPAASRLQLEQAVINLS 323

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
           + A  ++P GG + +   D     +  +++ 
Sbjct: 324 LNARDAMPSGGTLHLRTADVDAGGVRGIELQ 354


>gi|330504289|ref|YP_004381158.1| sensor histidine kinase [Pseudomonas mendocina NK-01]
 gi|328918574|gb|AEB59405.1| sensor histidine kinase [Pseudomonas mendocina NK-01]
          Length = 482

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 28/213 (13%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG 72
           + L S I HD+ +PI  +   +ELLD+  ++      +  + L    A+  +K       
Sbjct: 282 SQLFSAISHDLRTPITRLRLRVELLDDESLQRKFGRDLDDLELLVKGALQCVK------- 334

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
               +   I   D+  ++   I       RV +      +   +  A  + + NL     
Sbjct: 335 -DTDIHENIEPVDLNHLLHGLIEPYLGTGRVTLDGAARAVYPGKPLALQRCIGNLL---D 390

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            +L  G +  + ++D     +  +   G      +K  Q+ + +      +   Q Y + 
Sbjct: 391 NALKYGERAHLHIEDDDEAFVLHVDDEGPGV-PEQKLEQVFEPHFR---LASQQQGYGMG 446

Query: 188 L-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           L     LAH +   L    + D  + ++  L +
Sbjct: 447 LGIARNLAHSHGGELSLRNLRDGGLRVTLWLPR 479


>gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
 gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
          Length = 421

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 26/216 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ----------------LIR---LSSMSAII 62
           + HD+ +P+ A+   +E L +  + D  +                 L+      + +   
Sbjct: 205 VSHDLRTPLAALQALVETLLDGALADPAVAEDFLRRIAVEVEHMTRLVNQLLELTKAESG 264

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLN 121
           +L+  R+         + +   +     +   + V    ++              ++L N
Sbjct: 265 QLQLARVPTDLAELARATLRRFEPRAASKGIALTVQVAPEL---PPVACDPERIGQVLAN 321

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDS 178
           L   A    P GG++T+ +  +  E I  ++  G      E    F +   G+   +   
Sbjct: 322 LLDNALKFTPAGGQITVEIAAASGEAIVRVRDTGPGIPADELDRVFERFFKGDRARSGGG 381

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  L   +  R+  E       ++   L 
Sbjct: 382 SGLGLAIVKHLVQLHGGRVWAESPPGGGAIVGFALP 417


>gi|116747570|ref|YP_844257.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696634|gb|ABK15822.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 571

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRL 64
           L  +     + + I H+I +P+ A+  ++++L++     G    +M +I          +
Sbjct: 343 LERLVFAGRIAAEISHEIKNPLAAMSGAVQMLEDESIPDGSRARLMSIIHREIDRMNSLV 402

Query: 65  K-FMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
           K F+ LA    G  +   + + D+ Q I D ++   RV      +    +   ++     
Sbjct: 403 KDFLWLAKSTHGPENVENVPVCDLIQEILDLLSARNRVASEHVIKTAFAASPISRIDPHH 462

Query: 118 ---ILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFP-EKFTQIVD 169
              I+ NL + A  ++P GG +TI+V        +     + I+ + +  P +  T+I +
Sbjct: 463 FRQIVWNLLVNALDAMPGGGHLTIAVGLHPSGDGSGRETRIDISDSGSGIPRDARTRIFE 522

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
               +      +    V  L  +   R+     ++  
Sbjct: 523 PFFTTKSQGTGLGLSIVYHLVEKANGRIEVTHHEEPC 559


>gi|99081069|ref|YP_613223.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99037349|gb|ABF63961.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 769

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77
           HD  + + AI    +LL    + G +D    LI+   ++  A   +  + LAF       
Sbjct: 405 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAAALVSQL-LAFSRKQTLQ 462

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130
             ++ + +    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++
Sbjct: 463 PEVLDVRETLSDLTHLLNRLVGEKVSLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 522

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYY 185
           P GG++ +  +    +              P ++  I   +  + I    +Q     FY 
Sbjct: 523 PHGGEIRVETEVVALDTALE---RDRALVPPGEWVTIQVSDEGTGISPDKLQKVFEPFYT 579

Query: 186 VILLAHENKIRLLP 199
                    + L  
Sbjct: 580 TKRTGEGTGLGLST 593


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 24/216 (11%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSSMSAIIRL-KFMRLAFGY 73
            + HD+ SP+ AI  S ELL  +  E E +         IR S+      +   + LA   
Sbjct: 798  VSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASID 857

Query: 74   TGSV-----DSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAKILLNLFMV 125
             G++        +   + D  ++ E   A +K +Q+++  E    LS ++ +IL  L  +
Sbjct: 858  AGTLSVQAHPQRVDELVRDARELFEPH-AAEKGLQLAFEVEPGLILSCDKERILQALGNL 916

Query: 126  AHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----DS 178
               ++   P GG + +     +      L +       P      +       +    + 
Sbjct: 917  LSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYWHGVQNKREG 976

Query: 179  HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            H +       +   +  R+  E         S  L 
Sbjct: 977  HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 1012


>gi|322435171|ref|YP_004217383.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321162898|gb|ADW68603.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 657

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 8/143 (5%)

Query: 79  SLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLP 131
           S I L ++ + + D    +     V+V    E   + R       + +LNL + A  ++ 
Sbjct: 498 SEIDLREVVERVVDLTGAEMAEHNVEVRCALEPAVMVRADGEMLRQAMLNLMLNAMQAME 557

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191
           +GG + + V+   +  +  +   G     PE   +I +    +      I       +  
Sbjct: 558 QGGILRVGVRRDGDTALLVVADEGPGI-PPELMPRIFELYFTTKPKGSGIGLAMTYRIIQ 616

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +   +            +  L 
Sbjct: 617 MHGGAMEVTSEVGAGAAFTMRLP 639


>gi|258592608|emb|CBE68917.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 441

 Score = 43.4 bits (101), Expect = 0.024,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 18/220 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL----------SSMS 59
            L AL  L + + H+I +P+G I + +EL L +    +   Q I            ++  
Sbjct: 218 KLSALGTLSAGLAHEINNPLGIITSRVELALMDAQETEIPKQFIDDLKVIEKHAQRAARV 277

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
           A   L F R A G   S+D    + +   +IE  +  ++ V        +   +      
Sbjct: 278 ARGLLSFSRPATGQRLSLDMNGVIEESLLLIERQLEKEQIVLERRLAPSLPKVKGNVSQL 337

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVES 174
            ++LLNLF  A  ++  GG++ +  +   ++    + +       PE    QI D    +
Sbjct: 338 EEVLLNLFTNAREAMTAGGRLRVESRLGADDRTVQILVADTGDGVPEMLVQQIFDPFFTT 397

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +       +  E+  RL       +       L 
Sbjct: 398 KQNGTGLGLSISYGIVKEHGGRLDVRSEAGNGTTFVMTLP 437


>gi|303246344|ref|ZP_07332624.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302492407|gb|EFL52279.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 384

 Score = 43.0 bits (100), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 39/222 (17%)

Query: 24  HDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYT 74
           HD+ +P+ A+   L     +  D      +V++LI  +  S +  L       RL  G  
Sbjct: 165 HDLKAPLSALV-GLPQVLLDNYDLPEAAADVVRLIEQAGHSMLEMLNQSLVLFRLETGSY 223

Query: 75  GSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERAK----------ILL 120
                 + L D+ +     +A       RV  +    +    R+  +          +L 
Sbjct: 224 VLAPKPVDLADLTRRTAARLAGMPVARGRVIRTTLDGRPLTPRDHLEYKGDGLLLGPMLQ 283

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-------IVDGNVE 173
           NL + A  + P G  V + ++   +  + ++   G     PE            +     
Sbjct: 284 NLLVNALEAAPSGNDVAVDLRPQPDRVVIAMTNPGE---VPEAIRDRMFEKYVTMGKRGG 340

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + +     Y  +L A  +   +  +        ++  L +
Sbjct: 341 TGLGA-----YSAMLAARAHGGGIALDASVPGQTTVAVTLPR 377


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1991

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 24/216 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSSMSAIIRL-KFMRLAFGY 73
           + HD+ SP+ AI  S ELL  +  E E +         IR S+      +   + LA   
Sbjct: 761 VSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSADRMNRLIDDLLDLASID 820

Query: 74  TGSV-----DSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERA-KILLNL 122
            G++        +   + D  ++ E   A +K +Q+++  E   +    +ER  + L NL
Sbjct: 821 AGTLSVQAHPQRVDELVRDARELFEPH-AAEKGLQLAFEVEPGLILSCDKERILQALGNL 879

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----DS 178
              A    P GG + +     +      L +       P      +       +    + 
Sbjct: 880 LSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQPHIFDRYWHGVQNKREG 939

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           H +       +   +  R+  E         S  L 
Sbjct: 940 HGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 975


>gi|332527231|ref|ZP_08403299.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111651|gb|EGJ11632.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rubrivivax benzoatilyticus JA2]
          Length = 467

 Score = 43.0 bits (100), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 66/227 (29%), Gaps = 16/227 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSS 57
           +A+     + S  L   L S I HD+ +P+ A+    + L           L   IR S+
Sbjct: 214 VAQQSALQIESERLRNSLLSAISHDLRTPLAALVGLADTLAIAPPGPAPRGLVDAIRESA 273

Query: 58  MSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKID 110
                     L   RL  G      +   L ++              + V V+       
Sbjct: 274 RRMAALVGNLLDMARLQAGAVRLRRAWQPLEEVVGSALAACQPVLQGRPVTVALADGLPL 333

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKF 164
           LS +     ++L+NL   A    P G  + I  +         +   G      R    F
Sbjct: 334 LSLDAVLFERVLVNLLENAARYTPPGSTLVIRAEALDQTVRLVVDDQGPGLPPGREEALF 393

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            +   G  ES      +       +   +   +      +   V  A
Sbjct: 394 EKFERGERESATPGVGLGLAISRAIVQAHGGTIRGANRLEAGRVAGA 440


>gi|88860969|ref|ZP_01135604.1| sensor protein RstB [Pseudoalteromonas tunicata D2]
 gi|88816897|gb|EAR26717.1| sensor protein RstB [Pseudoalteromonas tunicata D2]
          Length = 427

 Score = 43.0 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 39/169 (23%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLIRLSSMSAIIR 63
           LL + + HD+ +P+  I   L+ L+EV             G + + M L+          
Sbjct: 213 LLSTAVSHDLRTPLARIRFGLDTLEEVVDDKHRNRLQQKLGKDVDEMTLL------VEAL 266

Query: 64  LKFMRLAFGYTGSVDSLIGLG----DIEQVIEDFIA--VDKRVQVSWTGE----KIDLSR 113
           L F RL           + L     ++ ++I + I     ++V++ ++      ++   R
Sbjct: 267 LNFARL-------DQQTLTLKKVSVELVELINECIESKQSEKVEIGFSCSASQTRVIADR 319

Query: 114 ERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFP 161
              K++ N   +   ++  G GKV I+++  KN  IF +  NG      
Sbjct: 320 NYLKMVFN--NIIQNAINYGQGKVIITLESDKNSFIFRVSDNGKGIAVD 366


>gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 443

 Score = 43.0 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 20/214 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSM-----SAIIRL-KFMRLAFG 72
           I H++ +PI ++    E L E  + D+ +    L R+S         +  L +  R+  G
Sbjct: 230 ISHELRTPIASLKLLAETLKEGAMADQEVAADFLNRISVEADKMGQLVDELGELSRIESG 289

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID-LSRERA------KILLNLFM 124
                   +  G +   +   +     R +++     +D L   RA      ++L+NL  
Sbjct: 290 AAPLDKRPMDAGAVMTTVVGRLQNQADRAKLTLEVATVDGLPAVRADAGRIEQVLMNLTH 349

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181
            A    P GG++T++   S+      +   G        P  F +    +   +     +
Sbjct: 350 NAIKFTPAGGRITLTAGISEKGIEIKVTDTGAGITADDLPRIFERFYKADKARSGGGTGL 409

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  + H +   +  E        +S  L K
Sbjct: 410 GLAIAKHIVHAHGGEIRAESSPGQGTTISFTLPK 443


>gi|148557326|ref|YP_001264908.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148502516|gb|ABQ70770.1| PAS/PAC sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 630

 Score = 43.0 bits (100), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 66/157 (42%), Gaps = 13/157 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           I HD  + +  I  S ELL +  +  E     ++ I  ++  A      + LAFG   S+
Sbjct: 288 IAHDFNNLMTVIRGSAELLQKEDLAPEKRRRYVRAITETADKATALTTKL-LAFGRRQSL 346

Query: 78  DSLI-----GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
              +      L    +V+   +     V++    +   +  + A++   LLN    A  +
Sbjct: 347 KPEVLDPGSRLDAFGEVLARTLGSPIEVRLDLAPDLWPIEADAAELETALLNAAFNARDA 406

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +P GG++TIS ++  +E+   + I  +    P +  +
Sbjct: 407 MPGGGRLTISARNVVDEHAVRIAITDSGQGIPAEMLE 443


>gi|84502459|ref|ZP_01000595.1| FixL-related histidine kinase [Oceanicola batsensis HTCC2597]
 gi|84389271|gb|EAQ02068.1| FixL-related histidine kinase [Oceanicola batsensis HTCC2597]
          Length = 509

 Score = 43.0 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 10/144 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAFGYT 74
           I HD  + +  I  +LELL+     D+   LI  +  +A          L F R +    
Sbjct: 147 IAHDFNNLLTVIIGNLELLEMSDAADKCGALISDALEAAEVGADLTSRLLVFARKSTLNA 206

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
              D    +     ++   I     ++ S+  +    + +  ++   +LN+ + A  ++P
Sbjct: 207 EVTDLNAEVSKAVAMLRRTIGAHIAIERSFAPDLWQTTIDATQLQTAVLNIALNAQDAMP 266

Query: 132 RGGKVTISVQDSKNENIFSLKING 155
            GGK+T+  ++   ++ +  +  G
Sbjct: 267 AGGKLTLETRNMALDDSYVAQEIG 290


>gi|289668763|ref|ZP_06489838.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 951

 Score = 43.0 bits (100), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL    E G  D +   +++ + S+  A    + + LAF    
Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLDSYVEMAQSSAARATALTQRL-LAFSRRQ 641

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + +  + + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 642 TLAPTAVDVEALVRDMHDIIARTLGPSIALQLRPADEAWQVLVDAPQLENALLNLCINAR 701

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 702 DAMPDGGELTISLHN 716


>gi|294664668|ref|ZP_06730002.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292605552|gb|EFF48869.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 951

 Score = 43.0 bits (100), Expect = 0.030,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL    E G  D +   +++ + S+  A    + + LAF    
Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + +  + + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 642 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 702 DAMPDGGQLTISLHN 716


>gi|161528807|ref|YP_001582633.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosopumilus
           maritimus SCM1]
 gi|160340108|gb|ABX13195.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosopumilus
           maritimus SCM1]
          Length = 618

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLS----SMSAIIRLKFMRLAFG 72
           L +RI HDI +P+  I +  ELL     I++   + I  S    +      L+++R    
Sbjct: 415 LSARISHDIRNPLAIIKSEFELLKLQKQIDENDFRRIDTSINRITHQLDDVLEYLR---- 470

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVAHAS 129
            T  V S   L ++   + D + +   V+++   ++I +  ++ K   IL+NL   +  +
Sbjct: 471 DTPLVYSKFNLTELVTEVIDTLQIPSNVKITIKDDEIFMIGDKDKINIILVNLIFNSIQA 530

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           L  GG + I +  + +E +  ++ +G       
Sbjct: 531 LEDGGDIDIILSKTNSEIVIQIRDSGIGITIKP 563


>gi|149177151|ref|ZP_01855758.1| probable sensory transduction histidine kinase [Planctomyces maris
           DSM 8797]
 gi|148844043|gb|EDL58399.1| probable sensory transduction histidine kinase [Planctomyces maris
           DSM 8797]
          Length = 264

 Score = 43.0 bits (100), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 58/167 (34%), Gaps = 31/167 (18%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEV-------MQLIRLSSMSAI----I 62
           A L   + H+I +P+  +  +LELL  D   ++          ++ ++            
Sbjct: 48  ATLAGGLAHEIKNPLSTMSMNLELLTEDLETLDVPAKHRMLKKVESVQKECKHLQDILDA 107

Query: 63  RLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGE-KIDLSRERA- 116
            L+F R   LA   +        L D+     DF     R   +  +     DL + +  
Sbjct: 108 FLQFARVGKLALSASN-------LNDLVSDFIDFFRPQAREASIEISPHFDADLPQVQVD 160

Query: 117 -----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                ++L+NL +    ++P GG + +            +  NG   
Sbjct: 161 QALFRQVLMNLALNVIQAMPDGGLIELQTSHKDGMVYLDIIDNGKGI 207


>gi|329765965|ref|ZP_08257527.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137514|gb|EGG41788.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 540

 Score = 43.0 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 25/159 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE----DEV----MQLIRLSSMSAIIR----LK 65
           L  R+ HD+ +P+  I  SL+LL +   +    D+V    ++LI  S      +    L 
Sbjct: 332 LSGRLAHDLRNPLSVIKISLDLLKQSPADTKISDDVTTKRLELIESSVERISHQIDDVLD 391

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKI---L 119
           ++R       +    +    I ++I   I        +++  +G   +++ +  KI    
Sbjct: 392 YVR-------NSPLKLSRRSIRKIILGSIEKISVPHNIKILVSGLDAEINCDYIKIDAAF 444

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +NL + +  + P GG + I ++   ++ I     +G+  
Sbjct: 445 INLILNSIQANPEGGTIEIKIKSDHDDVIIDFIDSGSGI 483


>gi|119511699|ref|ZP_01630804.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119463684|gb|EAW44616.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 583

 Score = 43.0 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 42/201 (20%)

Query: 18  LCSRICHDI---ISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK----F 66
           L S I HD+   +SPI  +   L L    L E  ++  ++ L+  ++      ++    F
Sbjct: 218 LTSAIAHDLKNILSPIMTVAQLLPLKHPQLSESSLQ--MLNLLETNTKKGTDLVQQIQSF 275

Query: 67  MRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNL 122
            R  F   GS+  +  L  DIEQ I+  +      +++ + E   +   +A++   L+NL
Sbjct: 276 TR-NFQGKGSIVLVANLSQDIEQTIKQILPKSIESEINISSEIEFVRGNQAQLHEVLINL 334

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
            + A  ++P GGKV IS               G+       FT+   G            
Sbjct: 335 LVNARDAMPEGGKVEIS---------------GHKVLIDASFTKTHIGAKVGE------- 372

Query: 183 FYYVILLAHENKIRLLPEIID 203
             Y+++   +  I + PE+I 
Sbjct: 373 --YLVITVSDTGIGMSPELIA 391


>gi|77748602|ref|NP_642000.2| histidine kinase-response regulator hybrid protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 951

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL    E G  D +   +++ + S+  A    + + LAF    
Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + +  + + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 642 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 702 DAMPDGGQLTISLHN 716


>gi|327402554|ref|YP_004343392.1| PAS/PAC sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327318062|gb|AEA42554.1| PAS/PAC sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 577

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 22/157 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRL--------KFMRLA 70
           I H++ +PI +I  SL+LL++     +  E +QLI  S      RL           ++ 
Sbjct: 363 ISHELKTPISSIKMSLQLLEKEAGGIVNPEQLQLI-HSIKEDSDRLLKITGELLNLSQIE 421

Query: 71  FGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKI--------DLSRERAKILLN 121
            G    V       D+    +E      +R QV+    +         D+ + +  +L+N
Sbjct: 422 TGNIQLVLQSSSPHDMVSHAVEAATKEAERYQVNIQVNEAEKISEIFVDMDKTQW-VLIN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           L + A    P GG VT+S++       F++   G   
Sbjct: 481 LLVNAIHYSPIGGTVTVSLEQQGTSVRFAVSDKGKGI 517


>gi|218782152|ref|YP_002433470.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763536|gb|ACL06002.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 609

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-K 65
           L S  L A+  L S++ H++ +P+  I N+LELL     E    + I   ++S  +R+ +
Sbjct: 383 LQSEKLAAMGKLTSQLAHELNNPLFGIMNTLELLKTEIPETSKRRKILDMALSETVRISE 442

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRER 115
            ++    ++        + DI  ++E+ + + +R            ++   E +  S+ +
Sbjct: 443 MLKKMLSFSKPDQEERQITDINTILEELLLLHERQLQENDVKVVRDLTEGLEPVMASKNQ 502

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            + + LN+   A  ++  GG  TI+ +   +     L   G
Sbjct: 503 LRQVFLNVIANARDAMQEGGTFTITSRAQGDFIYIDLADTG 543


>gi|310824787|ref|YP_003957145.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397859|gb|ADO75318.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 555

 Score = 42.6 bits (99), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-EVGIEDEV-------MQLIRLSSMSAIIRLKFMRL 69
           + S I HD+ + + A+   LE+L  +              MQ++  +        +F R 
Sbjct: 197 MSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLMQIVSDAGTRVRHLQEFSRQ 256

Query: 70  AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAKIL------ 119
            F  +     L G+  +  ++  D I    R   V++    E   L     +        
Sbjct: 257 RFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIENEVPVLPAVNGEAADLRYVF 316

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           LNL + A  ++P GG V +      ++ + +++  G        
Sbjct: 317 LNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQDHL 360


>gi|256830706|ref|YP_003159434.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579882|gb|ACU91018.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 586

 Score = 42.6 bits (99), Expect = 0.034,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 21/219 (9%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS---SMSAIIRL 64
            L AL  L + + H+I +P+ +I      L    +   +D    +I+ +   +      L
Sbjct: 366 RLTALGNLAAGVAHEIRNPLSSIKGFATYLAGKVQGQDQDAARAMIQETDRLNRVVSELL 425

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDL-SRERA 116
           +F R   G     D    L  + +     +  D          + + T  ++ L      
Sbjct: 426 EFARP--GEMKLRDE--DLAQVVERALRLVRADVTAKNVAVHFEQAGTLPRVPLDPERFT 481

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN-LARFPEKFTQIVDGNVEST 175
           + LLNLF+ A  ++ +GG + I+     +    +L+I         E    I +    + 
Sbjct: 482 QALLNLFLNAVQAMDQGGTLRITAAQEPDAGGVALRIADTGHGMAAELVPDIFNPYFTTK 541

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +  E +     V + +L 
Sbjct: 542 SSGTGLGLAIVHRIIEAHGGEIKVESVVGQGTVFTLMLP 580


>gi|255589574|ref|XP_002535010.1| two component histidine kinase, putative [Ricinus communis]
 gi|223524204|gb|EEF27375.1| two component histidine kinase, putative [Ricinus communis]
          Length = 479

 Score = 42.6 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 16/175 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  + N L++L         M++I      A+ R        L F R       
Sbjct: 133 HDFNNLLSVLSNGLQILAMQTRTPLDMKMI-EGMRRAVERGASLTQQLLSFARQQPLQAQ 191

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVAHASLPR 132
             D    +GD E ++          +++    +     + A+    LLNL + A  ++P+
Sbjct: 192 VYDLNALIGDFEPMLRRACNQQIHCELALHAREAFALVDAARFEAALLNLVVNAVDAMPQ 251

Query: 133 GGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           GG +T+  +  ++    +  + +G+  R            +   + +  ++ ++ 
Sbjct: 252 GGVITVMTEFIESHVSVTAALPSGSYIRVS---VADTGSGMPEDVLAQALEPFFT 303


>gi|294625165|ref|ZP_06703808.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600537|gb|EFF44631.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 951

 Score = 42.6 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL    E G  D +   +++ + S+  A    + + LAF    
Sbjct: 583 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 641

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + +  + + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 642 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 701

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 702 DAMPDGGQLTISLHN 716


>gi|159899976|ref|YP_001546223.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893015|gb|ABX06095.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 544

 Score = 42.6 bits (99), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 19/212 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + + + H+I +P+  I + LEL+ +       +  +       + R+   RL +      
Sbjct: 318 MAASLAHEINNPLAIIRSGLELVAQQHTPGTALGDLVQGLDEEVARI--ARLLYTLVNFY 375

Query: 78  DSLIG--LGDIEQVIEDFIAVDKRVQVS------WTGEKIDLSRERA------KILLNLF 123
                    D+  +I   + +  + Q+       +     DL           ++L+NL 
Sbjct: 376 QPNNDGVPPDLNHLIISLMHIT-KPQLDKANVKLYQELATDLPAPNISSDACKQVLINLV 434

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TIDSHDIQ 182
             A  ++P GGK+TI     K +   +++ +G     PE   +I +    +  +    + 
Sbjct: 435 RNAIDAMPDGGKLTIRTAHQKGQIFVNVEDSGIGI-PPEHRERIFEPFFSTKGVTGTGLG 493

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +  +    +  E I D     +  + 
Sbjct: 494 LSVVYGILQQVGGAISVESIVDKGSNFTLRIP 525


>gi|86158330|ref|YP_465115.1| signal transduction histidine kinase NtrB [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774841|gb|ABC81678.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 747

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 77/191 (40%), Gaps = 22/191 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----K 65
            L AL  + + + H+I +P+ AI  +++ LD   + ++  +   +       RL     +
Sbjct: 477 RLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVN-RLNGVVSQ 535

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVS---WTGEKIDLSRER 115
           F+      +  +   +    + +V+E              R+ +    W       + + 
Sbjct: 536 FLDY----SRPLKPSLAPTQVNEVLEKTFKLLQAEVPEAVRLDLDLAEWLPRVQADAEQL 591

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ LNL + A  ++PRGG++T+S + +++E  F  +          +F     G  +  
Sbjct: 592 KQVFLNLALNAFQAMPRGGRLTVSTRLARDELAFWREGARRADLVEIRFRDTGPGIPDDA 651

Query: 176 IDSHDIQFYYV 186
            +S  + FY  
Sbjct: 652 RESIFVPFYTT 662


>gi|260772412|ref|ZP_05881328.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio
           metschnikovii CIP 69.14]
 gi|260611551|gb|EEX36754.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio
           metschnikovii CIP 69.14]
          Length = 483

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 21/167 (12%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM----SAIIRL 64
             LL S + HD+ +P+G I  +   L +        I DE++Q I         S    L
Sbjct: 257 STLLAS-VSHDLKTPLGTIIGAATTLADNSVVLSSAIRDELLQSIAEQGRRLNRSLTKLL 315

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQ---VSWTGEKIDLSRERA---K 117
              R     TG++   +   + E++I   +A  + R+    + +T   + +  +     +
Sbjct: 316 DITRYT---TGALVPKLDWVEPEELIGSVLASLNSRLTFHHIQFTSTPMLVELDSLLIEQ 372

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           ++LNL   A    PRG ++TI+   +    I ++  NG     PE  
Sbjct: 373 VILNLLENAIKYTPRGSQITITTDYTNGRFILTVADNGPGVPEPELI 419


>gi|46581554|ref|YP_012362.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450976|gb|AAS97622.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235198|gb|ADP88052.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 553

 Score = 42.6 bits (99), Expect = 0.036,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 81/238 (34%), Gaps = 32/238 (13%)

Query: 1   MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEV--- 49
           +       L    S  L A+  L + I H+I +P+ AI    NSL  L    +++     
Sbjct: 253 ITNRTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSL--LRLPTLDETARGK 310

Query: 50  MQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQV 102
           +Q+I   S      L+    F R     T S      L  + +   + +A     +R+  
Sbjct: 311 VQVILEESRRLDNILRSILNFAR----PTTSKAGKADLNGVVRQTLELMAFGFDTRRITS 366

Query: 103 SWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                  DL R R       + L+NL   A  ++P GG +T+    + +    +++ +G 
Sbjct: 367 ELALA-ADLPRVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGE 425

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I      +      I       +  +   ++           ++  L 
Sbjct: 426 GI-PAEMHERIFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482


>gi|160936027|ref|ZP_02083400.1| hypothetical protein CLOBOL_00923 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440837|gb|EDP18561.1| hypothetical protein CLOBOL_00923 [Clostridium bolteae ATCC
           BAA-613]
          Length = 659

 Score = 42.6 bits (99), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 117 KILL---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDG 170
           K+LL   NL   A +  P  G +TIS    ++     +   G        P  F +   G
Sbjct: 549 KLLLLFENLIYNAISFTPEDGVITISPCLDQDGVTIRVSDTGMGIEPEHLPHIFERFYSG 608

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +++ +S  +  Y   +   E    +  E +     V +  + 
Sbjct: 609 RPDAS-ESSGLGLYIARITVEELGGSIHAESVKGQGSVFTVRIP 651


>gi|148262576|ref|YP_001229282.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146396076|gb|ABQ24709.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 491

 Score = 42.6 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 83/224 (37%), Gaps = 24/224 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           +  L ++  + + I H+I +P+  I +++ ++ D+    D   +++              
Sbjct: 264 ADRLASVGEMAAGIAHEIKNPLTGIASAITIIKDDFSPSDPRTEIVNEVLEQVSRLDKTV 323

Query: 64  --LKFMRLAFG-YTGSVDSLIGL-GDIEQVI------EDFIAVDKRVQVSWTGEKIDL-S 112
             L F    FG  +    + I +   +++ +           ++K++++      + +  
Sbjct: 324 NDLLF----FGKPSQPEPTYIDINATLKKTLMFASRHRGSKDIEKKLELQDDLPPVYVDP 379

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDG 170
           ++  ++ LNLF+ A  ++ +GG +TI     + +  +      +  +   P+   +I   
Sbjct: 380 KQIQQVFLNLFLNAVQAMYQGGVLTIKSSLLQKDCTWVEVSVADTGQGIPPQILEKIFTP 439

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       L  ++   L     D    + +  L 
Sbjct: 440 FFTTKAQGTGLGLAICHKLVTQHGGTLSVASEDGKGTIFTVALP 483


>gi|254503352|ref|ZP_05115503.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439423|gb|EEE46102.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 472

 Score = 42.6 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 16/212 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS----AIIRLKFM 67
           A L + + H++ +P+  +  +   L    D+  + ++ + LI     S    A   L   
Sbjct: 257 ARLAAGLAHEVRNPLAGMSAATSTLRRFGDDKTVREQTIDLIDRGLQSIDHVAASMLSTY 316

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLSRERAK-ILLNLF 123
           R   G          L D+  +I   +   K+V +S+     E    S E  + I+LNL 
Sbjct: 317 RPPEGNRDLKPD--DLNDLRTLINPKVRA-KQVDLSFQSELAETYPASAEAVRQIVLNLL 373

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
           + A  + P G  V    +  + +    +  +G      E    +  G       +  +  
Sbjct: 374 LNAIDATPVGSTVAFESKLIEEQLTIKVSDSGPGLPG-EALNVLTGGTTPEKPQTRRLGL 432

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + V  L  +   RL          V++  + K
Sbjct: 433 WLVHQLIDDVNGRLAISTRPQSGTVITITIPK 464


>gi|329848555|ref|ZP_08263583.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843618|gb|EGF93187.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 946

 Score = 42.6 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 24/179 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSA-IIRLKFMRL-AFGYTGSVDSL 80
           HD  + +G I  SL++L   G+  E  Q +I  +  SA   R+   RL AF         
Sbjct: 596 HDFNNLLGPIIGSLDMLQRRGVGGEREQRMIANALQSADRARVLVQRLLAF--ARRQPLQ 653

Query: 81  IGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
               D++ +IE              RV++           +  ++   LLNL   A  ++
Sbjct: 654 AEAVDVKGLIEGMADLVASTSGPTIRVELDLAPNLPSARADANQLEMALLNLAGNARDAM 713

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----SHDIQFYY 185
           P GG++ I+      E              P  + ++   +    +D    +  ++ ++
Sbjct: 714 PDGGRLVIAAAQEVVEAGHH-----RANLAPATYIRLSVSDSGLGMDTSTLARAVEPFF 767


>gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 521

 Score = 42.6 bits (99), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAFGY 73
           I H++ +P+ +I    ELL ++  +  E  + +     S+          L + RL  G 
Sbjct: 306 ISHELRTPLTSIIAFTELLLNDPRLAPEQRESLSEVLESSQKLLGMITNLLDYSRLEAGK 365

Query: 74  TGSVDSLIGLGD-IEQVIE--DFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                 ++ L D I   +     +A  KR+ +S                 +++LLNL   
Sbjct: 366 VKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMDCAPEVPLVHADPLRISQVLLNLLSN 425

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182
           A    P GG+V +  +  + E   +++  G      E    F     G  +   +   + 
Sbjct: 426 AVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPEEEQELIFQPFRQGREKGRPEGWGLG 485

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 L   +  R+  E    H    +  L 
Sbjct: 486 LALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517


>gi|319791417|ref|YP_004153057.1| integral membrane sensor signal transduction histidine kinase
           [Variovorax paradoxus EPS]
 gi|315593880|gb|ADU34946.1| integral membrane sensor signal transduction histidine kinase
           [Variovorax paradoxus EPS]
          Length = 467

 Score = 42.6 bits (99), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED------EVMQ-LIRLSSMSAIIRLKFMRLAFGYT 74
           I HD+ +PI  +    E++D+           + M  L+R           + R   G T
Sbjct: 267 ISHDLQTPITRMRLRTEMMDDEHDRTKFRQDLDAMNSLVREGVT-------YARTLHGAT 319

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132
                +     +E ++ D+    K V +        + R  A  +I++NL      +L  
Sbjct: 320 EPPLRMDADALLESMLADYEDAGKTVHLEGKAGTPIVGRPNAMRRIVMNLI---DNALIF 376

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           G  V + VQ    +   ++  NG      E 
Sbjct: 377 GSDVRVRVQPGDGQLAIAVVDNGPGIPPDEL 407


>gi|288959081|ref|YP_003449422.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911389|dbj|BAI72878.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 748

 Score = 42.6 bits (99), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSR--ERAKI---LLNLFMVAHASL 130
            +++ LGD  + + D +    R    + W      ++   +  ++   +LNL + A  ++
Sbjct: 458 PTVVDLGDSLRRMADLLERSIRADIALDWDIAPAPMAVAVDPVQLEMAVLNLVLNARDAM 517

Query: 131 PRGGKVTISVQDSKNENIFSLKI--NGNLARFPEKFTQIVDG 170
           P GG++ I+           +++   G   R P+   +  D 
Sbjct: 518 PGGGRIRIAAAPGPEPRSARIEVSDTGAGMR-PDVIARAFDP 558


>gi|117617519|ref|YP_858399.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117558926|gb|ABK35874.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 463

 Score = 42.6 bits (99), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI ++    E LDE   ++ + Q ++         L F R             
Sbjct: 267 ISHDLRTPITSLRLRTEFLDEGEDKERIQQTLQQMEQMLAATLSFAR-------EEGQQE 319

Query: 82  GLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRG 133
              +      +E + +D+    + V     G+++   R     ++L NL      ++   
Sbjct: 320 ATRELDLVSLLESLCDDYADTGQPVTCLAEGKQVYACRANTLRRVLQNLI---GNAIKYA 376

Query: 134 GKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHDIQFYY--VIL 188
           G   +S++ + +E +  +   G     AR  + F   V  +     +S  +         
Sbjct: 377 GSAEVSLERTDSELVIRVCDQGPGIDPARLEDVFKPFVRLDEARNTESGSVGLGLAIART 436

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           L H++   L     +   +     L 
Sbjct: 437 LVHQHGGELTLHNREQGGLEARISLP 462


>gi|146283221|ref|YP_001173374.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri A1501]
 gi|145571426|gb|ABP80532.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri A1501]
          Length = 561

 Score = 42.6 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----Y 73
           I HD  + +  I   L++LD   +    + +M  +R ++       + + LAF       
Sbjct: 203 IAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQL-LAFSRRQSLA 261

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHA 128
             SVD ++ +G + ++++  ++ D  VQV      W  E      E   ++LNL + A  
Sbjct: 262 PESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVD--PGELELVILNLAVNARD 319

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186
           ++P GG + I  +++ +E +  L+  G+  R       I DG  +   + +     ++ 
Sbjct: 320 AMPDGGSILIEARNAPDEPVMGLR--GDFVRL----AVIDDGTGIPEDVRARVFDPFFT 372


>gi|84501102|ref|ZP_00999337.1| sensor histidine kinase [Oceanicola batsensis HTCC2597]
 gi|84391169|gb|EAQ03587.1| sensor histidine kinase [Oceanicola batsensis HTCC2597]
          Length = 430

 Score = 42.6 bits (99), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 23/195 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ S + HD+ +P+  +   L +L++   E      ++         L F R      G
Sbjct: 227 TLMLSGVSHDLRTPLTRLKLGLSMLEDEEREPLERD-VQEMQRMIDEFLDFAR------G 279

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +    +   D   ++   +    R       V+ +  G  +       + L NL      
Sbjct: 280 AAAEKVEKCDPVAMVRGIVEDAARGGAVVRLVEATGEGRILLRPGAMRRALENLI---SN 336

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTIDSHDIQ 182
           ++  G +  +SVQ S+      ++ +G      +       F ++  G  ++ +    + 
Sbjct: 337 AVRYGSRAEVSVQLSEKALRIRVEDDGPGIPPEQREDATRPFARLEPGRNQNRVSGVGLG 396

Query: 183 FYYVILLAHENKIRL 197
                 +A  +   L
Sbjct: 397 LAIATDIARTHGGVL 411


>gi|193212167|ref|YP_001998120.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085644|gb|ACF10920.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 648

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 29/196 (14%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL-------SSMSAIIR 63
           M+LV  L   I HD  + + AI  + EL L ++      +  IR        S+      
Sbjct: 271 MELVGQLAGGIAHDFNNALAAIIGNTELVLKKLDPAHPTVSNIRDIHTLATRSADLTRQL 330

Query: 64  LKFMR--LAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRE 114
           L F R  +A         +  L +             D  +Q+ W   +  +       +
Sbjct: 331 LAFARKQVAM------PQVFNLTEAISESLHLHQRLLDDNIQLEWHLCEEPIQVKFDPTQ 384

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DG 170
             +IL NL + A  ++   G++T+     + +        G     P  + ++       
Sbjct: 385 LEQILSNLLINARDAIEGSGRITVKCGGVRFDPDDG--KTGTPGLSPGHYAKLSVTDNGS 442

Query: 171 NVESTIDSHDIQFYYV 186
            +E+T+  H  + ++ 
Sbjct: 443 GIEATVLPHIYEPFFT 458


>gi|108759200|ref|YP_633189.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463080|gb|ABF88265.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 515

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 71/177 (40%), Gaps = 32/177 (18%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQLIRLSS 57
           + +  L A+  + ++I H++ +P+ +I  ++ELL +              EV  LI    
Sbjct: 287 MRAEQLAAVGRISAQIVHEVRNPLSSIGLNVELLQDGFETARFATPEDAAEVKDLISA-V 345

Query: 58  MSAIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSW 104
              + RL     +++R+A          +   D+  V++  +             V   +
Sbjct: 346 TQEVDRLADVTEQYLRMA----RPPRPDLDPRDVTAVLDTVLDFTREELERAGVEVVRDF 401

Query: 105 TGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +   +  +  ++    LNL   +  ++P GG++TI  + +++    +++  G   
Sbjct: 402 ALDTPHVLADEGQLRQVFLNLLRNSREAMPSGGRLTIVTRPAEDAVEVTVRDTGQGM 458


>gi|119944999|ref|YP_942679.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863603|gb|ABM03080.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas
           ingrahamii 37]
          Length = 506

 Score = 42.2 bits (98), Expect = 0.043,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 46/236 (19%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAI-- 61
            S  L AL  +   I H+I +P+    ++ + L E G       E  + I++S   A   
Sbjct: 284 QSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFLMEEGLPLEFRTECAEKIQVSLEKASCI 343

Query: 62  --IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSR 113
               L+F R       S +  +   D++ V+ + I      A   ++++ +       S 
Sbjct: 344 IENLLRFSR------PSSEQNMVPVDLDTVLCETIMLIANQAKVYKIEIVYQPIGKCGSV 397

Query: 114 ERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++ +N F+ A  ++P GGK++I ++   +E    ++  G         T I+
Sbjct: 398 SGIFTLLQQVFMNFFLNAINAMPHGGKLSIILEQQNDEARICIRDTG---------TGIL 448

Query: 169 DGNVESTIDS-HDIQFY---------YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +G +++  D  H                  +  +++  +  + +       + LL 
Sbjct: 449 EGALDNIFDPFHTSSPAGKGVGLGLSLCYSIVKQHRGSISVDSMLGKGSTFTVLLP 504


>gi|220917160|ref|YP_002492464.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955014|gb|ACL65398.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 747

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 78/191 (40%), Gaps = 22/191 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----K 65
            L AL  + + + H+I +P+ AI  +++ LD   + ++  +   +       RL     +
Sbjct: 477 RLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVN-RLNGVVTQ 535

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQV---SWTGEKIDLSRER 115
           F+      +  +   +    + +V+E              R+++    W       + + 
Sbjct: 536 FLDY----SRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQL 591

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ LNL + A  ++PRGG++T+S + +++E  F  +          +F     G  +  
Sbjct: 592 KQVFLNLALNAFQAMPRGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGIPDDA 651

Query: 176 IDSHDIQFYYV 186
            +S  + FY  
Sbjct: 652 RESIFVPFYTT 662


>gi|322418879|ref|YP_004198102.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125266|gb|ADW12826.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 656

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 38/99 (38%), Gaps = 2/99 (2%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           ++ +NL + A A++ RGG++ +S +   +       + NG     PE   +I +    + 
Sbjct: 552 QVAINLILNAGAAMQRGGELVVSTEPGGEQWVSLKFRDNGAGIS-PEHMERIFEPFFTTK 610

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +  ++  ++  E        +   L 
Sbjct: 611 VKGTGLGLAITRQIVEQHHGKICIESGIGAGTTVEVRLP 649


>gi|168705546|ref|ZP_02737823.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 559

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           I HD  + +  +  +LEL+        +  +L+  +  +A    +  +   G+       
Sbjct: 203 IAHDFNNLLTVVLGNLELIRCGAATGADAEELLASTERAAKQAAELTKQMLGFARRQPLR 262

Query: 81  IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRER-----AKILLNLFMVAHASL 130
               D+ Q++ D +      +D R+ V +                 ++L+NL + A  ++
Sbjct: 263 TASVDLNQLVRDSLVLLRRTIDARIVVRFEPAPHLRPVAADPVQLQQVLMNLCLNARDAM 322

Query: 131 PRGGKVTISVQDSKNENI 148
           P GG +T+   D+   + 
Sbjct: 323 PEGGTLTVETADADPPDG 340


>gi|138895124|ref|YP_001125577.1| sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196248295|ref|ZP_03146996.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134266637|gb|ABO66832.1| Sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196212020|gb|EDY06778.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 430

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 67/163 (41%), Gaps = 18/163 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIR---LSSMSAII 62
             +  M++V+ L + I H+I +P+  +   ++LL  E    +   + IR        A  
Sbjct: 199 MKMEKMEIVSQLAASISHEIRNPLTVVKGFIQLLQTEPLPRETKERYIRIALEEVERAEG 258

Query: 63  RLK----FMRLAFGYTGSVDSLIGLG-DIEQVIE--DFIAVDKRVQVSWTGEKIDLSRE- 114
            +     F +            I +  ++ +V++    +A    V +S + E   +    
Sbjct: 259 IIHDYLTFAK----PAPKETEPIDVAVELRKVLQMIAPMAHMHSVDLSSSLEHGIVIGNV 314

Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               +  LNL   +  ++P GG + ++V++ +   + ++  NG
Sbjct: 315 QYFQQCFLNLLKNSIEAMPNGGTLRVTVENQETSVVITVSDNG 357


>gi|149918140|ref|ZP_01906633.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149821145|gb|EDM80551.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 394

 Score = 42.2 bits (98), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 59/156 (37%), Gaps = 14/156 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIRLKFM----RLAFGYTG 75
           I HD+  P+  I  ++ LL++ G   ++ V+  +R S   A   ++ +    R++ G   
Sbjct: 169 ISHDLRGPLNNIGLAMNLLEDGGAAHQERVLSTVRRSITRAERLIRDLADIGRMSAGALR 228

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLNLFMVAHASL 130
                +    + +          R +      +++    +      ++L  L  +   +L
Sbjct: 229 VEPRPVSPASLIESAVGDAQPSIRARAVRVDVELEPGLPKVWADGPRVLQVLDNLLRNAL 288

Query: 131 ---PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              P  G++ +  + + +   F ++  G      E+
Sbjct: 289 KFGPHAGRIILQARRAGDHVEFLVRDEGPGVAADER 324


>gi|86158207|ref|YP_464992.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774718|gb|ABC81555.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 621

 Score = 42.2 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 70/221 (31%), Gaps = 37/221 (16%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGY 73
           + HD+ +P+ AI      LL    + D     +  IR ++  A   ++      R   G 
Sbjct: 399 VSHDLRNPLNAILLGTSSLLAREDLSDRNVASIARIRSAAERATRLIRDLLDLTRARLG- 457

Query: 74  TGSVDSLIGLGDIEQVIED--------------FIAVDKRVQVSWTGEKIDLSRERAKIL 119
            G +       ++ QV +                +      Q  W  ++I      A+++
Sbjct: 458 -GGIPIQPRPTELRQVAQQVVDELEPSYPDRPILVEASGNTQGHWDPDRI------AQVI 510

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176
            NL   A     RG  VT+ V     E + S+   G     P +    +    G      
Sbjct: 511 GNLVTNALKYGARGTPVTVGVAAEDGEVLLSVHNLG--VPIPAEIIPTLFEPGGRAAPDP 568

Query: 177 DSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      V  +A  +  R+     ++     +  L +
Sbjct: 569 TGRSVGLGLFIVERIADAHGGRVEVRSGEEDGTTFTVRLPR 609


>gi|149917430|ref|ZP_01905928.1| osmosensitive K+ channel signal transduction histidine kinase
           [Plesiocystis pacifica SIR-1]
 gi|149821767|gb|EDM81163.1| osmosensitive K+ channel signal transduction histidine kinase
           [Plesiocystis pacifica SIR-1]
          Length = 357

 Score = 42.2 bits (98), Expect = 0.045,   Method: Composition-based stats.
 Identities = 41/208 (19%), Positives = 73/208 (35%), Gaps = 19/208 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRL-------SSMSAIIRLK 65
           +LL S + HD+ +P+GAI  ++  L+E G     +   QL+          +      L+
Sbjct: 129 SLLAS-VSHDLRTPLGAILGAVTTLEEGGERIDPETQSQLLAAIHDQAELLARQLRNLLE 187

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLNL 122
             R   G       L  + +   V+   +     D++V V    E +    +   + L L
Sbjct: 188 MTRFEGGGLELQRELAAVEEPIGVVLGALQHRLGDRQVDVQNPVEPLYARFDPVAVELVL 247

Query: 123 FMVAHASLPRG-GKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGNVESTID 177
             +   +L  G G + I V+   +      +               F + V G+  ST  
Sbjct: 248 SNLLENALRHGEGTIEIRVEAGGDREVEIRVLDRGPGLPPGGPERLFEKFVRGSKASTGG 307

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
              +    V LL  E+  R+      D 
Sbjct: 308 GVGLGLAIVALLVRESGGRVWARTRSDG 335


>gi|288960772|ref|YP_003451112.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288913080|dbj|BAI74568.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 593

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 20/150 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIR---LSSMSAIIRLK----FMRLAFGY 73
           I H+I +P+G I  S ++L       E    LI             ++    + R     
Sbjct: 380 IAHEIRNPLGIIKTSSQVLRMKSQPPEASDRLIGFVLDEVGRMEALVQELLDYAR----P 435

Query: 74  TGSVDSLIGLG-DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMV 125
             ++  ++ LG ++  V+E   A   R +V    E  D             + LLN+ + 
Sbjct: 436 KAAMRQVVDLGAELRNVLEFIAAEMFRRRVLPKVELPDGPLPVQGDPSQLHQALLNILLN 495

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155
           A  ++P GG ++++     +E   S+   G
Sbjct: 496 AMEAMPDGGALSVTALREGDEVAVSIADTG 525


>gi|297568937|ref|YP_003690281.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924852|gb|ADH85662.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 576

 Score = 42.2 bits (98), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 79/215 (36%), Gaps = 23/215 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLK----FMRL 69
           + + + H+  +P+ AI  S +LL +       +++++ +I          +K    F R 
Sbjct: 364 MAAGVAHEFRNPLAAISGSTQLLAQRLQKQPGQEKLLAIITRECDRLEAAIKNFLLFCR- 422

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKID---LSRERAK-ILLN 121
                      + L ++ +     I       +R ++             RE+ + +LLN
Sbjct: 423 ---PATPRKQWVNLYELWEECIGLIRQTPDCTERHRLVGKMPPDLEVWADREQLRQVLLN 479

Query: 122 LFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDS 178
           L   A  ++P GG+++ + +   S+NE+   +++        PE   +I +    +  + 
Sbjct: 480 LVSNACQAMPEGGELSCTAENFQSENESGVRIRLQDQGKGISPEDRERIFNPYFTTRQEG 539

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    V  +   +  R+            +  L
Sbjct: 540 TGLGLAIVHQIIAGHGGRIRVASSLGQGTTFTVEL 574


>gi|327481616|gb|AEA84926.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri DSM 4166]
          Length = 528

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----Y 73
           I HD  + +  I   L++LD   +    + +M  +R ++       + + LAF       
Sbjct: 170 IAHDFNNLLMVISGGLDMLDRRADPARRERLMAGMRQAAQRGTSLTRQL-LAFSRRQSLA 228

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHA 128
             SVD ++ +G + ++++  ++ D  VQV      W  E      E   ++LNL + A  
Sbjct: 229 PESVDLVLRIGRMRELLDRSLSGDVHVQVQFAPDLWPVEVD--PGELELVILNLAVNARD 286

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186
           ++P GG + I  +++ +E +  L+  G+  R       I DG  +   + +     ++ 
Sbjct: 287 AMPDGGSILIEARNAPDEPVMGLR--GDFVRL----AVIDDGTGIPEDVRARVFDPFFT 339


>gi|120601284|ref|YP_965684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|120561513|gb|ABM27257.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
          Length = 553

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 28/236 (11%)

Query: 1   MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHN-SLELLDEVGIEDEV---MQ 51
           +       L    S  L A+  L + I H+I +P+ AI   +  LL    +++     +Q
Sbjct: 253 ITNRTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSLLRLPTLDETARGKVQ 312

Query: 52  LIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSW 104
           +I   S      L+    F R     T S      L  + +   + +A     +R+    
Sbjct: 313 VILEESRRLDNILRSILNFAR----PTTSKAGKADLNGVVRQTLELMAFGFDTRRITSEL 368

Query: 105 TGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                DL R R       + L+NL   A  ++P GG +T+    + +    +++ +G   
Sbjct: 369 ALA-ADLPRVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGEGI 427

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I      +      I       +  +   ++           ++  L 
Sbjct: 428 -PAEMHERIFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482


>gi|182416233|ref|YP_001821299.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177843447|gb|ACB77699.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 622

 Score = 42.2 bits (98), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 14/152 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAF---G 72
           L S I HD+ + +  +  + ++L     E++   L+     SA   ++  R  +AF   G
Sbjct: 250 LASGIAHDLSNVLVPVVFATDILRRAPREEQEQALLDTIHSSAGRAIQIARQIIAFVRGG 309

Query: 73  YTGSVDSLIG--LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125
            +   +  +   L +  ++         R++       W         + A++L+NL + 
Sbjct: 310 ESRRTELQLRDVLHETAEMARVVFPKSIRIREDLPEDLWPVRADAA--QMAQVLMNLAVN 367

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           A  ++P GG++  +  +    ++    I+G  
Sbjct: 368 ARDAMPDGGELQFAAGNLAECDLARNGISGAR 399


>gi|283853644|ref|ZP_06370878.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283570977|gb|EFC19003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 490

 Score = 42.2 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 23/223 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLS-SMSAIIR 63
            S  L A+  L   I H+I +P+ AI    N+L    ++G+       I LS S      
Sbjct: 263 KSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGLASREKASIILSESKRLDAI 322

Query: 64  LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117
           LK    F R     T SV   + + D+       +      Q       +      A+  
Sbjct: 323 LKDIINFAR----PTSSVPGEVNVNDVAARTTALMRHGLEAQHITLTLALSPDTPMARGD 378

Query: 118 ------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                  LLN    +  ++P GG++T++    +     S+  +G     P+   Q+ +  
Sbjct: 379 PETLTQCLLNCLKNSMEAMPGGGRITVATGLRQGRVFLSVADDGPGI-APDILPQVFNPF 437

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +  +    +  E    H   ++  L 
Sbjct: 438 FTTRDKRAGLGLAMTKKILEDLGGAVDLESPPGHGATVTLFLP 480


>gi|258543850|ref|ZP_05704084.1| sensor histidine kinase [Cardiobacterium hominis ATCC 15826]
 gi|258520890|gb|EEV89749.1| sensor histidine kinase [Cardiobacterium hominis ATCC 15826]
          Length = 500

 Score = 42.2 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 24/189 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLEL-LDEVGIEDEVM-QL 52
           +A ++   L  ++  AL+ S+      I HD+ SP+  + N +E+ L +   E   + ++
Sbjct: 252 LADDLNHMLDRIE--ALITSQRQVTNNIAHDLRSPLNRMRNRMEVALLDRNSEAAALREV 309

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--LGDIEQV-------IEDFIAVDKRVQVS 103
           I  S   A   LK                     +           + D +  +      
Sbjct: 310 IADSVEDAENLLKTFNALLNIAQVESRAKDDFKHESLSAICDDLAELYDVMTEEGEHSFE 369

Query: 104 WTGEKI-DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
              E+  D+   R   A+ + NL   A    P GG +T++ +        S+  NG+   
Sbjct: 370 AHIERGLDIMGNRQLIAQAITNLLDNAVKYTPSGGHITLTAEQRGENIHVSVGDNGHGI- 428

Query: 160 FPEKFTQIV 168
            P+K   ++
Sbjct: 429 PPDKRDDVL 437


>gi|108805767|ref|YP_645704.1| multi-sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108767010|gb|ABG05892.1| multi-sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 608

 Score = 42.2 bits (98), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 68/206 (33%), Gaps = 16/206 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75
           H++ +PI A+   LE+L++   E+   + +R    +   RL+          RL      
Sbjct: 385 HELKTPISALSGYLEMLEDEQDEEVRAEFLRE-MRTQTERLQNLARTLLDLSRLDANAVI 443

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSRERAKILLNLFMVAHASL---P 131
                + L D+   +    +   R  ++        +  +  ++   L ++   ++   P
Sbjct: 444 FRLEEVDLEDLLHELRRDFSYTGRPLRIHAEEGVPPVETDPTQLHRTLAILVDNAIKYSP 503

Query: 132 RGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
            G  V ++++      +  ++  G   + A  P  F +       S  D   +       
Sbjct: 504 EGTPVDLTLRREDGGVVIDVRDRGCGISEAEIPHIFERFYRAQGSSRADGTGLGLALANE 563

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +  +         S +L 
Sbjct: 564 IVGHLGGEIRVQSEPGAGSTFSVVLP 589


>gi|76803264|ref|YP_331359.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76559129|emb|CAI50728.1| signal-transducing histidine kinase; probable GAF, PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 508

 Score = 42.2 bits (98), Expect = 0.049,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 10/145 (6%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYT 74
            S   HD+ +P+ A    LEL  E   +DE +  ++ S   A  R    L+F R   G T
Sbjct: 312 ASHASHDLRNPLSAAAGRLELAIEQHGDDEDLLAVKRSLEDADARIDEMLEFARA--GNT 369

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAHASLPRG 133
            +    + L +      + +  +          ++   R+R + L  NLF     ++   
Sbjct: 370 VTDPKPVSLSEAAAAAWETLDTEGATLAVDDEVRLRGDRDRIERLFENLF---RNAVEHA 426

Query: 134 GKVTISVQDSKNENIFSLKINGNLA 158
           G+       +     F +  +G   
Sbjct: 427 GEDATVRLGALPTPGFYVADDGPGI 451


>gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 467

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 18/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--IRLSSMSAIIRL-KFMRLAFGYT 74
           L + + H++ +P+  I   LEL+ +     E   L  I+   M     +    +L+    
Sbjct: 230 LVADVAHELRTPLTIIQGQLELIQQGVKRAEPETLLPIQDEVMRLTRLVGDLHQLSLAEA 289

Query: 75  GSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL----SRERAKILLNLFM 124
           G +       D+  +    +      A  K + +S                 ++++NL  
Sbjct: 290 GRLPLEKTWTDLTALAGRIVDNFQIEAEAKEITLSLEASDSIPVYVDPHRMTQVIVNLVG 349

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI--VDGNVESTIDSH 179
            A    P GG + I V+   +E I ++   G   R    P  F +    D          
Sbjct: 350 NALRYTPTGGTIRIVVRQEGSEAILAVSDTGPGIRPEHLPHIFDRFFRSDEARSREEGGT 409

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +           +  R+  E         +  L K
Sbjct: 410 GLGLAIAKEFVEAHGGRIGAESRPGEGTTFTVRLPK 445


>gi|253573995|ref|ZP_04851337.1| lantibiotic biosynthesis sensor histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846472|gb|EES74478.1| lantibiotic biosynthesis sensor histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 464

 Score = 42.2 bits (98), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 19/198 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFM---RLAFGY 73
           S + HD+ +P+  +  ++ELL E    DE     + I  S+      +K +         
Sbjct: 247 SALAHDVKTPLTIVRGNVELLSETEQSDEQREYTEYIAQSARQMEAYIKTLIEITNTETA 306

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRERA--KILLNLFM 124
                  + L +    +E  +     V+                 +      + L+N+  
Sbjct: 307 ASYQPVNLDLKEFIHTLEAQMQALAAVKELSVAVHFVGELPDELYADPVLLERALMNVIA 366

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSH-D 180
            A    P    +T+SV+ + +   F +   G             Q   G+     D H  
Sbjct: 367 NAMDHTPAKSTITLSVEAAGDRIQFRVTDEGPGFSPEALKYATEQFYMGDPSRRSDGHYG 426

Query: 181 IQFYYVILLAHENKIRLL 198
           +  Y    +A  +   L 
Sbjct: 427 MGLYITQFVAQLHGGELH 444


>gi|220908212|ref|YP_002483523.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864823|gb|ACL45162.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 682

 Score = 42.2 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 26/190 (13%)

Query: 9   LSSMDLVAL--LCSRICHDI---ISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSA 60
           + +  L +L  L S I HD+   ++PI  +   L  L    + ++  QL+     S+   
Sbjct: 307 MRAQRLESLGTLASGIAHDLNNILTPILGVAQ-LLPLKFPHMNEQTRQLLDTLETSARRG 365

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDL 111
              +K    F R   G   S+     L +I Q+I   +     + ++     W  E    
Sbjct: 366 SALIKQILSFARGIEGKHLSLQLSHLLQEIRQIIIQTLPKSIDIHLNLQPQLWMVEGDVT 425

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQI 167
              +    +NL + A  ++P+GG + I  +    D    + F     G   R     T  
Sbjct: 426 QLHQV--FMNLCVNARDAMPQGGSLEIQAENLELDEAAAHTFLEARPGRYVRV--TITDT 481

Query: 168 VDGNVESTID 177
             G     + 
Sbjct: 482 GKGIPPENLS 491


>gi|115377380|ref|ZP_01464585.1| sensory box histidine kinase/response regulator, putative
            [Stigmatella aurantiaca DW4/3-1]
 gi|115365591|gb|EAU64621.1| sensory box histidine kinase/response regulator, putative
            [Stigmatella aurantiaca DW4/3-1]
          Length = 1222

 Score = 42.2 bits (98), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 18   LCSRICHDIISPIGAIHNSLELLD-EVGIEDEV-------MQLIRLSSMSAIIRLKFMRL 69
            + S I HD+ + + A+   LE+L  +              MQ++  +        +F R 
Sbjct: 864  MSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLMQIVSDAGTRVRHLQEFSRQ 923

Query: 70   AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAKIL------ 119
             F  +     L G+  +  ++  D I    R   V++    E   L     +        
Sbjct: 924  RFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIENEVPVLPAVNGEAADLRYVF 983

Query: 120  LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            LNL + A  ++P GG V +      ++ + +++  G        
Sbjct: 984  LNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQDHL 1027


>gi|168701908|ref|ZP_02734185.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Gemmata obscuriglobus UQM 2246]
          Length = 418

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 23/168 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAI----IRLKFMRL 69
           L + I H++ +P+G +   +E LL +   +D     ++++              L+F R 
Sbjct: 189 LAASIAHELNNPLGTVSLRIEGLLAKTPADDPRRRPLEVVEGEVERMAGLVANLLQFSR- 247

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAK-ILLN 121
                    S + + +      D +A   R        Q +     I   R+  + + LN
Sbjct: 248 ---AGRDQVSTVDVCEEVSRTVDLVAHHLRKHGVLVEPQFAPGVPHIHADRQHLRQVFLN 304

Query: 122 LFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARFPEKFTQ 166
           LF  A  ++PRGG++   V+            ++I       P +   
Sbjct: 305 LFTNAADAMPRGGRLVPRVRAGALPDGRPAVVIEIADTGVGIPAELRD 352


>gi|145300859|ref|YP_001143700.1| two-component system sensor histidine kinase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853631|gb|ABO91952.1| two-component system sensor histidine kinase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 461

 Score = 42.2 bits (98), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI ++    E L E   ++ + Q ++         L F R             
Sbjct: 265 ISHDLRTPITSLRLRTEFLAEGEDKERIQQTLQQMEQMLAATLSFAR-------EEGQQE 317

Query: 82  GLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRG 133
              +      +E + +D+    + V     G+++   R     ++L NL      ++   
Sbjct: 318 ATRELDLVSLLESLCDDYADTGQPVTCLVEGKQVYACRANTLRRVLQNLI---GNAIKYA 374

Query: 134 GKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYY--VIL 188
           G   +S++ +++E +  +   G      R  + F   V  +    I+S  +         
Sbjct: 375 GSAEVSLERTESELLIRVCDQGPGIDPERLEDVFKPFVRLDEARNIESGSVGLGLSIART 434

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           L H++   L     +   +     L 
Sbjct: 435 LVHQHGGELTLHNREQGGLEARISLP 460


>gi|291546652|emb|CBL19760.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Ruminococcus sp.
           SR1/5]
          Length = 224

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 22/153 (14%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S+  H++ +P+  I++ L+++     +       D+VM  +       +  L     AF 
Sbjct: 19  SKFSHELRNPLTLINSGLQMIASAHPDVKEYEHWDDVMDNL-DYVKELLDELS----AFN 73

Query: 73  YTGSVDSL-IGLGD-IEQVIE------DFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLF 123
             G V    I     +  ++       D++ +     +  +   + L R R + +LLNL 
Sbjct: 74  NAGHVKRENIDTCSYLRTILSSIKPTLDYLEITLETDIPDSLPSMALDRIRVRQMLLNLL 133

Query: 124 MVAHASLPR-GGKVTISVQDSKNENIFSLKING 155
             A  ++P  GGK++ SV    +     ++ NG
Sbjct: 134 KNAWEAVPIPGGKISFSVIPENSGIRIDIRDNG 166


>gi|260892097|ref|YP_003238194.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ammonifex degensii KC4]
 gi|260864238|gb|ACX51344.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ammonifex degensii KC4]
          Length = 621

 Score = 42.2 bits (98), Expect = 0.054,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 19/217 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAII----RLK 65
            L AL    + + H+I +P+  I   +++    G      + L+              L 
Sbjct: 393 RLAALGKFVAGVAHEIRNPLTTISGYIQMWQRYGKPTPHSLPLVAQEVRRLNAIVDKLLF 452

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDL-----SRERAKI 118
           F R              L  +   +  FI  A D +V+V  +             +  ++
Sbjct: 453 FAR----PAEMKLQPYDLNQLVVQVLQFIGHAQDNKVKVEVSLSPELPTVLLDPEQMRQV 508

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL-ARFPEKFTQIVDGNVESTID 177
           L+N+   ++ ++P GG +++S + + +     + +        PE   +I D    +   
Sbjct: 509 LMNIIYNSYQAMPNGGLLSVSTELTSDGKYAVVTVGDTGCGIPPENLPRIFDPFFTTKAR 568

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +   +  E        +   L 
Sbjct: 569 GSGLGLALAHEIVTAHGGHIEVESKVGVGTTMRVYLP 605


>gi|119718537|ref|YP_925502.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119539198|gb|ABL83815.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 593

 Score = 42.2 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 31/223 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRL------- 69
           L + + H++ +P+ AI    E+L  E G+ D     +           +  R+       
Sbjct: 374 LVATVSHELKNPLSAILGYAEILAGEPGLSDAARACVAAIERGGG---RLARVVDDLLLL 430

Query: 70  ---AFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKIDL-----SRERAKI 118
              A     S    + LG        +   +A  +R+ +      + +      R+   +
Sbjct: 431 HEPADADAMSTSQPVDLGQAVAEVVELNGPVARGRRLTLRADLPAVPVLALADPRDVDHV 490

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           + NL   A    P GG + ++V+   +E    L+   +     E+    +      + D 
Sbjct: 491 VTNLVGNALKYTPEGGTIAVTVERDGDEA--VLRCTDDGIGIAEEEQAHLFEEFFRSTDP 548

Query: 179 HDI-QF------YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + Q         V  +   +  R+  +            L 
Sbjct: 549 AAVAQPGTGLGLAIVRRVVERHGGRIEVDSALGRGSTFRVFLP 591


>gi|49475714|ref|YP_033755.1| sensor histidine kinase [Bartonella henselae str. Houston-1]
 gi|49238521|emb|CAF27757.1| Sensor histidine kinase [Bartonella henselae str. Houston-1]
          Length = 825

 Score = 41.8 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEV--GIEDEVMQLI--RLSSMSAIIRLKFMRLAFG-YTGS 76
           I HD  + + AI  S +LL       +     LI  + ++  A   ++ + LAF      
Sbjct: 457 IAHDFNNVLTAILMSCDLLLNTHRSFDPAYADLINIKNNANRAAALVQQL-LAFSRKQTL 515

Query: 77  VDSLIG----LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAH 127
               +     L DI  +I   +  + ++++      W+ E    S +R   ++NL + A 
Sbjct: 516 QPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSVEVDQASFQRV--IMNLVINAR 573

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG VTI+  +
Sbjct: 574 DAMPNGGIVTIATNN 588


>gi|289548272|ref|YP_003473260.1| multi-sensor signal transduction histidine kinase [Thermocrinis
           albus DSM 14484]
 gi|289181889|gb|ADC89133.1| multi-sensor signal transduction histidine kinase [Thermocrinis
           albus DSM 14484]
          Length = 639

 Score = 41.8 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 84/208 (40%), Gaps = 15/208 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLA 70
           +++   +   I H + +P+ +I  S E+L    ++D+ ++ L++    +     + +R  
Sbjct: 413 LNIAGEIAVSIAHQLNNPLASILASAEVL-MSRLQDDTLKPLVQRIVDNTARASQTVRKL 471

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSW------TGEKIDLSRERAKI 118
              +GS D      +   + E  +      A  K V++ +               +  +I
Sbjct: 472 LDISGSKDGSPSKVNPATLTEGVVDMMLYKARKKGVKLEYVNFLKENITLFCYPWKLEQI 531

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           L+NL   A    P+GG V +++++ +   ++S+K +G   R  +   +I +    + ++ 
Sbjct: 532 LMNLVDNAIDETPQGGYVRVTLEEVRGGLVWSVKDSGKGVR-EDILDRIFEPFFTTKVEG 590

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHN 206
           + +    V     +   R+      D  
Sbjct: 591 YGLGLSIVKRFVEDMGGRVEVINHPDGA 618


>gi|115375617|ref|ZP_01462874.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823166|ref|YP_003955524.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367393|gb|EAU66371.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396238|gb|ADO73697.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 549

 Score = 41.8 bits (97), Expect = 0.056,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 24/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVM-QLIRLSSMSA---IIRL-------- 64
           +  R+ H+I +P+  I  SLE LL     +D     L R S+      + RL        
Sbjct: 336 VARRLAHEIKNPLTPIQMSLETLLAAQSAQDARFPALFRESAGVVLEEVDRLRRIVDEFS 395

Query: 65  KFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKIL 119
           +F RL         + + L ++ + V+  +      + +  T +   ++R       ++L
Sbjct: 396 RFARL----PKPQLTPVDLSELTQSVLALYATPPPGITLLPTIQTGVVARADRDQLTQVL 451

Query: 120 LNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +NL   A  +L  +GG V + V+ ++ + I  ++  G      E  ++I +    +    
Sbjct: 452 VNLVKNAEEALADKGGSVRVRVKGTQTDAIVEVEDTGPGIPL-EHRSRIFEPYFTTKQGG 510

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       +  E+  +L            S +L +
Sbjct: 511 TGLGLAIAARILQEHGGKLEVGGEPGEGARFSLILPR 547


>gi|224370880|ref|YP_002605044.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
 gi|223693597|gb|ACN16880.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
          Length = 557

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 74/190 (38%), Gaps = 31/190 (16%)

Query: 3   KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE--------D 47
           K +   L   D + AL  + + + H+I +P+G I        +LL++            D
Sbjct: 313 KELNAQLIQADKMAALGKMAAGVAHEINNPLGIIAAKAGWMRDLLEDEAFRNSENFKEYD 372

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--------DKR 99
           + ++ I      A    K      G+  S++ ++   D+ QV++  +          D R
Sbjct: 373 QALEKIEEHVERAA---KVTHNMLGFARSMEPVMERVDVNQVLKKTLEFLDYHAGINDIR 429

Query: 100 VQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           ++  +     ++  +++++    LN+   A  ++ R G +T+      +  +  +   G 
Sbjct: 430 IETRFDESIPEIMSDQSQLQQVFLNILNNAVDAIERQGTITVETLAKTDTLVIHITDTGR 489

Query: 157 LARFPEKFTQ 166
               PE   +
Sbjct: 490 G--IPETLKK 497


>gi|85707060|ref|ZP_01038149.1| sensor histidine kinase [Roseovarius sp. 217]
 gi|85668501|gb|EAQ23373.1| sensor histidine kinase [Roseovarius sp. 217]
          Length = 453

 Score = 41.8 bits (97), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VDSLIG 82
           HD+ SP+ A+    E++DE    D ++  I          L F R   G   S V   + 
Sbjct: 266 HDLRSPLTAMRVRAEMVDEDETRDSLVASIEEMQEMVDATLAFAR---GMASSEVYETVD 322

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           LG   + ++  +     +  + +       +   + L N   +   +   GG   ++   
Sbjct: 323 LGAYLKQLQADMIDGFTLDTANSISVRLRPQSVRRALRN---IIENAQRYGGGAEVTFVH 379

Query: 143 SKNENIFSLKINGNLARFPEK 163
                   +  NG      E 
Sbjct: 380 DAEYVQIRVSDNGPGVPEAEL 400


>gi|312114267|ref|YP_004011863.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219396|gb|ADP70764.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 836

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 73/221 (33%), Gaps = 37/221 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSA-------IIRLKFMRLAFGYTG 75
           HD  + +  I   LE+L     +DE  Q LI ++   A          L F R       
Sbjct: 422 HDFNNLLMPILAGLEMLQRRYPDDERTQRLIGMALQGAERSRTLISRLLSFAR----RQN 477

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAK------ILLNLFMVAHA 128
                + +GD+   + D +      Q+    +  + L             LLNL + +  
Sbjct: 478 LEARPVDVGDLVNGMMDLMLRTLGPQIDIHLKIAEGLPAASVDPNQFELALLNLAVNSRD 537

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY--- 185
           ++P GG++ I +     +N      +G   R     T    G  E+T+  H I+ +Y   
Sbjct: 538 AMPDGGRIIIEISLETVQNDSKDLKSGAYIRV--AVTDTGYGMDEATLQ-HAIEPFYSTK 594

Query: 186 -----VIL-------LAHENKIRLLPEIIDDHNVVLSALLE 214
                  L       LA ++   L              LL 
Sbjct: 595 GVGKGTGLGLSMVYGLAAQSGGMLRLASRSGEGTTAELLLP 635


>gi|108758513|ref|YP_628610.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108462393|gb|ABF87578.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 698

 Score = 41.8 bits (97), Expect = 0.058,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 75/214 (35%), Gaps = 20/214 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK----FMRLAFGY 73
           + HD+ +P+GAI  ++ ++ + G+ DE      Q IR S+  A   ++    F R   G 
Sbjct: 465 VSHDLRNPLGAISLAVSMMLQRGLLDERQARQAQRIRSSADRATRMIRDLLDFTRARQGT 524

Query: 74  TGSV-DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
              V    + L ++ + + D +           + +  G         A+++ NL   A 
Sbjct: 525 GLPVYPQPMDLHEVVRTVLDEVHAGWPDRHLETERTGDGVGTWDPDRLAQLIGNLVGNAL 584

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV-ESTIDSHDI-- 181
              P G  V ++ +   +  +  +   G      R P  F  +    V         I  
Sbjct: 585 QYSPPGTPVRVTSRGDDDGVVLEVHNLGPAIPLERQPRIFEPLERATVRPEDQGRRSIGL 644

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             Y V  +   +   +     ++     +  L +
Sbjct: 645 GLYIVRSIVLAHGGTVEARSQEETGTTFTVRLPR 678


>gi|313159142|gb|EFR58517.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 392

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 35/225 (15%)

Query: 20  SRICHDIISPIGA--IHNSLELLDEVGIEDEVMQL--------IRLSS-MSAIIRLKFMR 68
           S I HD+ SPIG   +  ++ L++    +     L        I  S+ M     LK+ +
Sbjct: 156 SVIAHDLRSPIGTLKMVFNMLLMNLTPEQIGEENLEMVTMGNNITESTFMLLDNLLKWTK 215

Query: 69  LAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKID---LSRERAKILL-N 121
              G   SV   + + ++        D +A  K + V +            +  K ++ N
Sbjct: 216 SQTGRMNSVFQEVDISEVVVFASKMSDLVAQVKSISVEYDIPGPISVNCDVDMVKTIMRN 275

Query: 122 LFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD--------G 170
           L      ++     GG++ ISV+++      S++  G   R  E   ++++        G
Sbjct: 276 LM---SNAIKYSNEGGRIIISVRETPTHARISVRDFGTGIR-EEDIPKLLNPEIHYMTYG 331

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +Q   V  L   N   L  E  +      +  + K
Sbjct: 332 TKNEEGSGLGLQ--LVQDLTRRNGSELTIESAEGEGSTFTFTIAK 374


>gi|289661809|ref|ZP_06483390.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 940

 Score = 41.8 bits (97), Expect = 0.059,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL            D  +++ + S+  A    + + LAF    
Sbjct: 572 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLDRYVEMAQSSAARATALTQRL-LAFSRRQ 630

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + +  + + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 631 TLAPTAVDVEALVRDMHDIIARTLGPLIALQLRPADEAWQVLVDAPQLENALLNLCINAR 690

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 691 DAMPDGGELTISLHN 705


>gi|322434234|ref|YP_004216446.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX9]
 gi|321161961|gb|ADW67666.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX9]
          Length = 604

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 19/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLI---RLSSMSAII 62
           + S  L  +  + S I HD+   I AI+ + E L        E  +LI   + +      
Sbjct: 354 VDSERLATIGRMASSISHDLRHYISAIYANAEFLSLEATPQVEREELIFEVQTAVHGMTD 413

Query: 63  RLKFMRLAFGYTGSV--DSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSR 113
            L  + L F  TG     S   +  + +     +       A++ R+    + E    + 
Sbjct: 414 LLDSL-LGFSKTGRSLLPSYESIPYLVERAAGLLRAHPEARAIELRLDELPSVEAWVDAT 472

Query: 114 ERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171
           +  + + NL + A  +  RGG V  ++V+ S++E    LKI  N    P  F   +    
Sbjct: 473 KFVRAVFNLLLNACQAARRGGLVPAVTVELSEDEKRIVLKIIDNGLGVPASFATTIFEPF 532

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +   +       +A E+   +  E       V +  L K
Sbjct: 533 VSTGRENGTGLGLTLAQHIAQEHGGMVRLEESAPGRTVFTLSLYK 577


>gi|110634254|ref|YP_674462.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285238|gb|ABG63297.1| PAS/PAC sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 651

 Score = 41.8 bits (97), Expect = 0.060,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 47/227 (20%)

Query: 24  HDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74
           HD  + +  I +SL+LL       ++ +  L+  +  +A          L F R      
Sbjct: 291 HDFNNLLMVILSSLDLLRRKLPDNDERIRSLVDNAVQAAQRGASLTQRMLSFAR----RQ 346

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKI------LLNLFMVAH 127
               + + L ++   I D +       +         L +           LLNL + A 
Sbjct: 347 ELKRTAVDLPELVHGISDLLQRTLGPLIRIETRFPPTLPKVHTDANQFESALLNLAINAR 406

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQ 182
            ++P GG + IS ++            G  AR        +        ++    +    
Sbjct: 407 DAMPSGGPLIISAREETISG-------GPGARLAPGRYVCLSVEDRGEGMDEETLARATD 459

Query: 183 FYYVIL---------------LAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                  LA ++  RL  + +          L 
Sbjct: 460 PFFTTKGIGKGTGLGLSMVQGLAEQSGGRLSLKSVKGEGTTAEMWLP 506


>gi|332715677|ref|YP_004443143.1| putative two-component sensor histidine kinase protein
           [Agrobacterium sp. H13-3]
 gi|325062362|gb|ADY66052.1| probable two-component sensor histidine kinase protein
           [Agrobacterium sp. H13-3]
          Length = 438

 Score = 41.8 bits (97), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    ++ D+   +++++  +R         + + R A G  G   S I
Sbjct: 241 ISHDLQTPITRMRLRADMADDTPEKEKLVSDLREIERLVQDGIAYARSAHGN-GEKSSRI 299

Query: 82  GLG-DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
            L   I+ +  D+    K V V         ++  A  +IL NL      +L  GG   I
Sbjct: 300 DLASFIDSIAYDYQDTGKAVTVDGMVRGTVSTKPHALRRILTNLI---DNALKFGGSAEI 356

Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQ 166
            V D + E    + +       P++  Q
Sbjct: 357 KV-DRRTEGTVVITVLDRGPGIPDEMLQ 383


>gi|303246319|ref|ZP_07332599.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302492382|gb|EFL52254.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 822

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L + + H+I +P+G I    ELL +   + + +  + +    AI+  K +R    +    
Sbjct: 602 LAAGLAHEINNPLGVIACYAELLRQNETDPQALDDLAVIERHAIMAKKVLRDLLDFARPR 661

Query: 78  DSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEK-IDLSRERA----KILLNLFMVA 126
            +  G  DI  +++         A  ++V++  T +  + ++R  A    ++L NL + A
Sbjct: 662 QASTGPCDIAALLKSLSRLFEVQAQARKVRLETTIDDNLPVARADASALEQVLSNLLLNA 721

Query: 127 HASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQFY 184
             ++ P  G+V I+ +   +++  S+ ++ N    P    T+I D    +          
Sbjct: 722 LDAVSPETGEVRIAARPGPDDDSVSILVSDNGPGIPPQDLTRIFDPFFTTKEAGRGSGLG 781

Query: 185 YVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
             ++  L  +   R+  E  D    V + +L 
Sbjct: 782 LAVVFGLLRDMGGRVEVENADGA--VFTVILP 811


>gi|254476571|ref|ZP_05089957.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. R11]
 gi|214030814|gb|EEB71649.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. R11]
          Length = 439

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 25/203 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYT 74
            L+ S + HD+ +P+  +   L +L++   E      +R         L  F+  + G +
Sbjct: 236 TLMLSGVSHDLRTPLTRMKLGLSMLEDEEAEP-----LRQDVDEMQALLDAFLDFSRGVS 290

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA--KILLNLFMVAHASL 130
            S    +    +  V  D      +  +    +GE   + R+ A  + + NL      ++
Sbjct: 291 TSEPEAVDPHVLVTVAVDGWRRQGKDVMLGEMSGEGEVMLRKAALRRAIENLI---SNAV 347

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-------- 182
             G +  +SV  ++      ++ +G      ++   +      + +D    Q        
Sbjct: 348 RYGSRARVSVALTERFLRIRVEDDGPGIPEADRAEAM---RPFTRLDPARNQDLGSGVGL 404

Query: 183 -FYYVILLAHENKIRLLPEIIDD 204
               V  +A  +   L     +D
Sbjct: 405 GLAIVTDIARAHGGMLRLGKSED 427


>gi|323138439|ref|ZP_08073508.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396235|gb|EFX98767.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 742

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 27/171 (15%)

Query: 22  ICHDIISPIGAIHNSLELLD----EVGIEDE----VMQLIRLSSMSAI----IRLKFMRL 69
           + H++ +P+GAI NS+ LL+    E    +E     +  I+             L+  R+
Sbjct: 521 LAHELRNPLGAISNSVNLLNILTSETSSAEEKKRASLARIKRQVNHLKRIVDDLLEITRI 580

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI------ 118
             G        + LG+I     D           ++ +      +++  +  ++      
Sbjct: 581 KHGKIELKKERVELGEILSQAVDLCQPLVQEKGHQLTIELPSRPLEVDGDPVRLVQIFGN 640

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           LLN  +    +   GG++ I+    + E I  ++  G     PE    I D
Sbjct: 641 LLNNAVKFTDA---GGRIDIAAAHGEKEAIVRVRDTGAGL-PPETLGSIFD 687


>gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 691

 Score = 41.8 bits (97), Expect = 0.062,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 28/226 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM----SAIIRLK 65
             L + L S I H+I +P+  +    E+L+E   E       LIR S      +    L 
Sbjct: 448 ARLKSTLLSNISHEIRTPLAGVIGFAEVLEEELDEPHRELAALIRDSGRRLLETLNTLLD 507

Query: 66  FMRLAFGYTGSVDSLIGLG-DIEQVIE--DFIAVDKRVQVSWTGEKIDLS---------R 113
             R+  G             ++ Q +     +  DK +++        L          R
Sbjct: 508 LARIEAGAFVLTPEPFDAADEVRQSVRIFQRMIDDKGLRLELDLPDAPLPVYLDRNGFHR 567

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV-- 168
               ++ N            G + + +    +     ++  G   + A  P  F +    
Sbjct: 568 IVVNLVSNAVKFTDE-----GMIRVGLAAEGDWLRLQVQDTGVGIDPAFMPHLFEEFRQE 622

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +  T     +       L      R+  +         +  L 
Sbjct: 623 NNGLARTHPGSGLGLAITHRLVEMMGGRIEVQSEKGKGTTFTVWLP 668


>gi|316933147|ref|YP_004108129.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315600861|gb|ADU43396.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 445

 Score = 41.8 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 10/146 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    E +++     + +  +          L F+R   G T    +LI
Sbjct: 240 ISHDLRTPITRMRLRAEFIEDEHQRTQTLHDLDQMGAMLTAVLTFLRD--GATRDAPTLI 297

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVT 137
            L    Q+I D        +V++ G +  +      +  + + NL      ++  G +VT
Sbjct: 298 DLASAMQLIADQFTDIG-AKVAYQGPEHAMAMARPGDLHRAVTNLV---ENAVRFGTEVT 353

Query: 138 ISVQDSKNENIFSLKINGNLARFPEK 163
           I +  +++     ++ +G      +K
Sbjct: 354 IRLALTQDTITIEVEDDGPGIADADK 379


>gi|86157319|ref|YP_464104.1| osmosensitive K+ channel signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773830|gb|ABC80667.1| osmosensitive K+ channel signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 902

 Score = 41.8 bits (97), Expect = 0.063,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 71/230 (30%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59
           A+       + +L + L S + HD+ +P+ AI  +  LL +  + D  +  +L+      
Sbjct: 654 ARRSALRARTEELRSGLLSAVSHDLRTPLAAITGASTLLLDAAVADPAVRRELVATVVEE 713

Query: 60  A-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           A          L   RL  G        + L ++     + +      +      + DL 
Sbjct: 714 AERLERLVSDLLDMTRLDSGVVEPRREWVPLVEVVGAAMNRVERALGNRPVAIALRDDLP 773

Query: 113 RERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKF 164
                     ++L+NL   A    P G +++++        +  +   G        E+ 
Sbjct: 774 LLSIDPILIEQLLVNLLENATKYTPPGTEISVAAVREGGTLVIEVADRGPGIPAGEEERI 833

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +         +    +       +A  +  RL          V    L 
Sbjct: 834 FERFHRAARPGVRGVGLGLPIARAIAQAHGGRLTAASRPGGGSVFRLTLP 883


>gi|237798889|ref|ZP_04587350.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021743|gb|EGI01800.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 397

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+   ELL    ++D+ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINAGAELLLRRPLDDKTLQVVQHILTSGQRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131
             S+     +++ +E  I+  +RV     +      ++L R +  +I   L  +   ++ 
Sbjct: 242 PLSIHDAHGLDKTLEHVISEVQRVHPDRLIRSNIGALELIRCDHERIAQLLSNLVSNAIS 301

Query: 132 RG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185
            G  + ++ V      ++F L +       PE     +       I         +  Y 
Sbjct: 302 HGDAQSSVEVNAGVRGDLFVLSVANQGEPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIARAHGGVLEVCSTHEGGTVFTFSMP 390


>gi|148265415|ref|YP_001232121.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146398915|gb|ABQ27548.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 662

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 79/229 (34%), Gaps = 31/229 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSS----M 58
           + +  L A+  L + + H+I +P+  I  + ELL      +    E +  I         
Sbjct: 438 VRAEKLAAIGELAAGVAHEINNPMAIIRGNTELLQMSIPPEADNREEVDTIFQQMGRVER 497

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEK 108
                LKF R            +G   I +++ + ++             R + +    +
Sbjct: 498 IVANLLKFAR-------QEQKNLGTVFINRLLREILSQVGHQVPLSGINIREEYAPDIPE 550

Query: 109 IDLSRERAKILL-NLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFT 165
           I+   ++ + +  NL + A  ++P GG +TI   +     +   ++   GN     E   
Sbjct: 551 IEGDSDQVRQVFINLVINAVQAMPGGGDLTITTGIDSEAGKCEITVTDTGNGIAL-ENLE 609

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           QI +    +      +       +  ++  R+      +   +   +L 
Sbjct: 610 QIFNPFFTTKAGGTGLGLSVSYGIIRDHGGRIEVRSEPEKGSMFRVVLP 658


>gi|310825294|ref|YP_003957652.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398366|gb|ADO75825.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 873

 Score = 41.8 bits (97), Expect = 0.066,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNS--------------LELLDEVGIEDEVMQLIRLS 56
            L AL  L + + H++ +P+GAI NS              L L+D VG E + +  I   
Sbjct: 643 RLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVGEEADRLNRIVD- 701

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLS--- 112
                  L F R     + S   +     +E V+   +A     ++V W  E        
Sbjct: 702 -----DLLNFARP---PSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPPVLA 753

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQI 167
             R   +  LNL + +  ++ +GG + +  +     ++E        G+     +   +I
Sbjct: 754 DERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVRARI 812

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    V  +   +   +  E           LL 
Sbjct: 813 FEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 859


>gi|117618476|ref|YP_858674.1| sensory histidine kinase CreC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559883|gb|ABK36831.1| sensor histidine kinase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 473

 Score = 41.8 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 16/207 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIR-LKFMRLAFGYTGS 76
           H++ SP+ AI  + E+L E    +        + L        I R L+  RL  G    
Sbjct: 265 HELKSPLAAIRGAGEILAETPPPEVARRFIGNINLETARMQQLIERMLQLARLESGQGLD 324

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL------NLFMVAHASL 130
             S+      ++ ++    + +R QV    E     +++   LL      NL   A    
Sbjct: 325 RQSVEPAKLGKRTLDARQIIAQRRQVELVAELASAPKQKWDPLLVEQAIGNLLDNAIDFS 384

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           P  G+VT+S    K    F +   G        P  F +           S  +   +  
Sbjct: 385 PANGQVTLSGSLQKEGYCFRVTDGGPGIPDYALPRIFERFYSLPRPDKGKSSGLGLSFAH 444

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +AH++  RL      +   +    L 
Sbjct: 445 EVAHQHGGRLTLANRPEGGALAELWLP 471


>gi|218187433|gb|EEC69860.1| hypothetical protein OsI_00217 [Oryza sativa Indica Group]
          Length = 750

 Score = 41.8 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 45/222 (20%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS------------AIIRLK------ 65
           H++ SP+ AI  + E+L E        + I    +             A  RL+      
Sbjct: 541 HELKSPMAAIRGAAEILAEQPPPQVAARFIDNILVQNARMQSLVEKLLAQARLENRVEIT 600

Query: 66  ---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                    F RLA                    +  +   + V  +  G+   L     
Sbjct: 601 PEVIRVNSLFTRLA-----------DARSALLSAKAIVLTIQPVPFNVEGDPDLLE---- 645

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVE 173
           + L NL   A    P+GG + ++ ++ + +    +  +G+          F +      E
Sbjct: 646 QALGNLLDNAIDFTPQGGTIELAAREEQGQIQLVVIDSGSGIPDYALDRIFERFYSLPRE 705

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + S  +   +V  +A  ++  +     D+  V+ +  L +
Sbjct: 706 NGLKSSGLGLAFVQEVARLHQGEITLRNRDEGGVMATLTLHR 747


>gi|126462925|ref|YP_001044039.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104589|gb|ABN77267.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 941

 Score = 41.8 bits (97), Expect = 0.067,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 19/199 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           L S + HD+ + + AI  S  L+ +   G  +   Q I  ++  A   ++   L  G   
Sbjct: 541 LASGLAHDLNNLLAAIGGSALLIQDLQSGAAEVHAQRILAATEQAGALVRRF-LTLGKRQ 599

Query: 76  SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128
           S  S I     L +   +++  +    R+ ++     I +     +  +++LNL + A  
Sbjct: 600 SNRSRIDLCPLLQEAADLVQAGLRNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARD 659

Query: 129 SL----PR--GGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
           ++    PR  G ++T+++  +    +      G      R+           +E  + + 
Sbjct: 660 AISTAPPREGGHEITVALAPAGPAQLAQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQAR 719

Query: 180 DIQFYYVILLAHENKIRLL 198
             Q Y+    A    + L 
Sbjct: 720 VFQPYFSTKGAAGTGLGLA 738


>gi|223940722|ref|ZP_03632560.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890613|gb|EEF57136.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1463

 Score = 41.8 bits (97), Expect = 0.068,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 16/132 (12%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
            I HD+ + +  I  S ELL+    + E+ ++I  S  +   R        L F R   G 
Sbjct: 1103 IAHDLNNVLAPILMSCELLEHELRDAEIREVIS-SIKTGAQRGADLVRQVLSFARGVEGR 1161

Query: 74   TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHA 128
              ++     + +IEQ++ +      +V VS     W         +  ++LLNL + A  
Sbjct: 1162 RLALQPRHLIREIEQIMGETFPKSIQVDVSPDPELWMVVGD--PTQLHQVLLNLCVNARD 1219

Query: 129  SLPRGGKVTISV 140
            ++P GG++T+S 
Sbjct: 1220 AMPAGGQLTLSA 1231


>gi|291288804|ref|YP_003505620.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885964|gb|ADD69664.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 623

 Score = 41.8 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMR 68
           +CHD+++PI  +   +E  ++       ++ E  +LI  S   AI  ++ +R
Sbjct: 400 LCHDLLNPISCVIGMMEYYNDPNEMAEVMDAEGKELIVESLEQAINIIQMVR 451


>gi|94992604|ref|YP_600703.1| two-component system histidine kinase [Streptococcus pyogenes
           MGAS2096]
 gi|94546112|gb|ABF36159.1| two-component system histidine kinase [Streptococcus pyogenes
           MGAS2096]
          Length = 343

 Score = 41.8 bits (97), Expect = 0.069,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAI----IRLKFMRL 69
           L S I H I +P+ A +   +LL + G+ DE     +  +++S           +K  RL
Sbjct: 125 LISDISHQIKTPVAAANTFAQLLGDTGLSDEERSEYIATLQMSLEKLTFLTNSLIKMSRL 184

Query: 70  AFGYTGSVDSLIGLGDI-EQVIEDFI--AVDKRVQVS---WTGEKIDLSRE-RAKILLNL 122
             G          L DI  Q ++     A DK + ++       +  L     A+ + N+
Sbjct: 185 ESGIIRLKPEQSSLNDIVMQAVKTVYAKARDKNITITFDCGQTFEALLDFNWTAEAVTNV 244

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
              A    P GG V + + +  +     +  NG      E    F +   G   + +D  
Sbjct: 245 LDNAVKYTPSGGVVDLKITEYPSYLRLDVSDNGIGIPEEEQAKIFGRFYRGKQSAGVDGV 304

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I  Y    + ++    +     D+     S  L+K
Sbjct: 305 GIGLYLTRDIVNKQNGYIKV-ASDEKGTTFSLFLKK 339


>gi|148658249|ref|YP_001278454.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus sp. RS-1]
 gi|148570359|gb|ABQ92504.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus sp. RS-1]
          Length = 516

 Score = 41.8 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 20/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAII 62
           + +  L A+  L + I H++ +P+ AI   L L  E    +      ++L        + 
Sbjct: 276 VRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCAPETPNQHFLRLAEEEIERIVR 335

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
            L+ +R  +     V + + + ++ +   ++        R++V         + +     
Sbjct: 336 VLERLRDLYRPRADVFTNVDVNELIESVLLLTGKQLERSRIRVVRELTPNLPTIQGVADQ 395

Query: 117 --KILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             ++LLNL + A  ++P GG + +      +   +     ++   G     PE+ T+I D
Sbjct: 396 LKQVLLNLVLNAAEAMPNGGILHVQTHRAHLASGQEAIAIAITDTGVGI-PPEQLTRIFD 454

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G   +      +  Y    +   +   +  + I         ++ 
Sbjct: 455 GLHTTKERGMGLGLYTSKAIVERHLGSISVQSIPGEGTTFEIMVP 499


>gi|21107860|gb|AAM36536.1| histidine kinase-response regulator hybrid protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 676

 Score = 41.8 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-T 74
           + HD  + + AI   LELL            +  +++ + S+  A    + + LAF    
Sbjct: 308 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVEMAQSSAARATALTQRL-LAFSRRQ 366

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAK-ILLNLFMVAH 127
               + + +  + + + D IA      ++      D      +   + +  LLNL + A 
Sbjct: 367 TLAPTALDVEALVRGMHDIIARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINAR 426

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG++TIS+ +
Sbjct: 427 DAMPDGGQLTISLHN 441


>gi|116622423|ref|YP_824579.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225585|gb|ABJ84294.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 690

 Score = 41.8 bits (97), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 52/126 (41%), Gaps = 10/126 (7%)

Query: 39  LLDEVGIEDEVMQLIRL-------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE 91
           LL + G+    M  +R         +      L F R   G+  ++D    + + + ++E
Sbjct: 353 LLSDAGLSQRTMTGLREIRCAGDRGAELTGQLLAFSRKQIGHPRALDLNALVRESQGMLE 412

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             +  D R+ VS       +  +R ++   L+NL + A  ++P GG + I   +     +
Sbjct: 413 RLLGEDVRLAVSLDPAASAIRADRGQMHQVLMNLVVNAREAMPEGGTLWIETANVTEGGL 472

Query: 149 FSLKIN 154
             +++ 
Sbjct: 473 GYVRLR 478


>gi|239905563|ref|YP_002952302.1| sensor protein KdpD [Desulfovibrio magneticus RS-1]
 gi|239795427|dbj|BAH74416.1| sensor protein KdpD [Desulfovibrio magneticus RS-1]
          Length = 889

 Score = 41.4 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 19/218 (8%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVM-QLIRLSSMSAIIRLK-----FM 67
            ALL S + HD  +P+ AI  S E LL         + + +  +      RL+      +
Sbjct: 668 AALL-STVTHDFKTPLSAIAGSAESLLALGEATTPEVRRSLEENIAQEASRLERLVDNLL 726

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERA---KI 118
           R+A   +GSV   I L  IE V+   +A          V +    +   +  +     ++
Sbjct: 727 RIAALESGSVVPDIKLIPIEDVVGSALARLDATLAGHAVHLDIPDDLPPIPMDEVLMEQV 786

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDGNVESTI 176
           L+NL   A    P G ++ +S     ++ +  ++  G       PEK  +       S+ 
Sbjct: 787 LINLLENAAKHTPLGTEILVSAAIRGHKAVIEVRDAGPGLPPGDPEKLFERFQRGDRSST 846

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +       +   +   +  +         + +L 
Sbjct: 847 SGYGLGLAICRAVVKAHGGSITADRNRPAGAAFTVILP 884


>gi|168699112|ref|ZP_02731389.1| Multi-sensor Hybrid Histidine Kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1099

 Score = 41.4 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           I HD+ + +  I  +L+ L     +  E++ ++   +  A   ++ + L F   G  ++ 
Sbjct: 734 IAHDLNNALAPITMALQTLKHSYPDHAELLDVLEAGAGRAAGMVRQL-LTFAKGGEENTR 792

Query: 81  IG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
           I       L + E+++      +  + V++      L     ++   LLN+ + A  ++P
Sbjct: 793 IAVSARAVLTEAEKIVHSTFPKNIALTVTYPPGLPALLANPTQLHQVLLNMCVNARDAMP 852

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            GG +T+S + ++ +   +  +    AR P  +  +  G+    I +
Sbjct: 853 AGGALTLSAEAAELDQAAADALAEFGAR-PGSYVVLKVGDTGGGIPA 898


>gi|218778402|ref|YP_002429720.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759786|gb|ACL02252.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 847

 Score = 41.4 bits (96), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 55/144 (38%), Gaps = 25/144 (17%)

Query: 24  HDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSSMSAII---RLKFMRLAFGYTG 75
           HD  + + A++       ++L  +      + Q +     +A +    L F R       
Sbjct: 479 HDFNNLLQAMNGFVELAGMDLPRDHRSRPFLEQTLTAGRRAANLVQQLLLFSR------- 531

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDL-----SRERAKILLNLFMV 125
           S D      D+   ++D + +  R+     QV W      L          ++L+NL + 
Sbjct: 532 SKDMQFKYMDLNTAVDDLLKMVGRIIGTDIQVQWRPWNSSLTIHADPGMMDQVLMNLCVN 591

Query: 126 AHASLPRGGKVTISVQDSKNENIF 149
           A  ++P GG +TI+    + +  F
Sbjct: 592 ARDAMPNGGVLTIAASIMEADAPF 615


>gi|94496319|ref|ZP_01302896.1| two-component sensor histidine kinase [Sphingomonas sp. SKA58]
 gi|94424065|gb|EAT09089.1| two-component sensor histidine kinase [Sphingomonas sp. SKA58]
          Length = 565

 Score = 41.4 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 81/236 (34%), Gaps = 28/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL-IR 54
           ++++   L  M+++  L   + HD  + +  I   L+L+       E       M L   
Sbjct: 197 SQDMLRQLQKMEVMGQLTGHVAHDFNNLLTPIIAGLDLILSPRRTPESIDRHAGMALQAA 256

Query: 55  LSSMSAIIRL-KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL 111
            S+   + RL  F R          + + L D+   +E  +A     R+ +S        
Sbjct: 257 ESAQILVQRLLTFAR----RQPLSPTAVHLPDLLAGMEALLASTLGPRITLSTDLPADLP 312

Query: 112 S----RERAKI-LLNLFMVAHASLPRGGKVTISVQ--------DSKNENIFSLKINGNLA 158
                  + ++ +LNL + +  ++P GG +TI  +           +    +++  G   
Sbjct: 313 PVHADANQLELAILNLAINSRDAMPDGGTLTIEAERLSPPQGLAPGDYVRITIRDTGTGM 372

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P+     ++    +    H +       LA +    L  +  +     +   L 
Sbjct: 373 -TPDVRKAAIEPFFTTKTGGHGLGLSMAHGLAGQLGGTLQIDSEEGAGAAILLWLP 427


>gi|83645344|ref|YP_433779.1| osmosensitive K+ channel histidine kinase [Hahella chejuensis KCTC
           2396]
 gi|83633387|gb|ABC29354.1| Osmosensitive K+ channel histidine kinase [Hahella chejuensis KCTC
           2396]
          Length = 527

 Score = 41.4 bits (96), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 15  VALLCSRICHDIISPIGA-IHNSLELLD--EVGIEDEVMQLIRLSSMSAI-------IRL 64
            ALL S + HD+ +P+ A I ++  LL   +   +++  +L+  +   A          L
Sbjct: 287 AALLSS-VSHDLKTPLAAMIGSAGSLLQYHDRLSDEDRKELMETTLQEAERLDRYIQNLL 345

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN--- 121
              RL +G          L DI       +  + +          D+        L    
Sbjct: 346 DMTRLGYGALKLHRDWTSLHDIVGAAVKRLVNELKPLKVNIELAPDIPLLYVHAALLEQA 405

Query: 122 LFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L  +   +    P GG++ I         I  +   G      E+
Sbjct: 406 LINILENAAKFSPEGGRIDILASVESTSLIIDVIDQGPGIPPEER 450


>gi|325168814|ref|YP_004280604.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325064537|gb|ADY68226.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 701

 Score = 41.4 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 15/150 (10%)

Query: 24  HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGYTGSVDSL 80
           HD  + + A+  +LELL + VG +   ++LI  +   A     L    LAF  +   D  
Sbjct: 345 HDFNNLLMAVLGNLELLRKYVGNDARAVRLIEGAQQGAKRGASLTQRLLAF--SRRQDLR 402

Query: 81  IGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHASL 130
           I   D+  ++     + KR           V      +     + ++ LLNL + A  ++
Sbjct: 403 IDPVDMRALVAGMEDLLKRSVGSTVVIKTDVPDHLPLVSADANQVELALLNLVVNARDAM 462

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARF 160
           P GG++ I + D            GN    
Sbjct: 463 PDGGEIVIGLHDVHQNVQAGELAAGNYVVL 492


>gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1032

 Score = 41.4 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 24  HDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYT 74
           HD  + +  I+   E+L     DE   +   +  IR +   A       L F R A    
Sbjct: 654 HDFNNLLTVINGYSEVLLAGMSDESDPDRRAVAAIRDAGERAAALTSQLLAFSRRAVLKP 713

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLP 131
             +D    + +  +++   I  D R+  +       +     +  ++L+NL + A  ++P
Sbjct: 714 RVLDLNKVVAETGKLLGRLIGEDVRLSTALDPRAGRVSVDPGQFGQVLMNLAVNARDAMP 773

Query: 132 RGGKVTISVQ 141
            GG++TI  +
Sbjct: 774 TGGQLTIETR 783


>gi|86159761|ref|YP_466546.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776272|gb|ABC83109.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 581

 Score = 41.4 bits (96), Expect = 0.076,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRL---- 64
           +  R+ H+I +P+  I  S+E L E   +             Q I          +    
Sbjct: 359 VARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEGTQAIGEEVRRLKRIVDEFS 418

Query: 65  KFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNL 122
           +F RL A          +    +         V+    ++     +   R++  ++LLNL
Sbjct: 419 RFARLPAPERAEVPAEELAAAVLALFPAAPPGVEVERAIAPDLPAVLADRDQVMQVLLNL 478

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A  ++P GG++ ++    ++   F +  +G     P    ++ +    +      + 
Sbjct: 479 VRNALDAMPSGGRLRLAAYRDRDAVAFEVSDSGPGI-APGDLERVFEPYFTTKPGGTGLG 537

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +A E+   L            +  L 
Sbjct: 538 LAIARRIAEEHGGALDAASSPGAGATFTLRLP 569


>gi|148266201|ref|YP_001232907.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399701|gb|ABQ28334.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 476

 Score = 41.4 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 73/229 (31%), Gaps = 46/229 (20%)

Query: 18  LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L S I H+I +P+  I  ++     ELL       + ++ I  +    + +  +M L F 
Sbjct: 255 LASGIAHEIRNPLNYISLAIDHLKSELLPSCPERGKELESIADNIKEEVRKANYMVLNFM 314

Query: 73  YTGSVDSLIGLGDIE--------------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
             G     + L ++               ++ E  I V + +                  
Sbjct: 315 NYG-RPLKLRLHEVRYPELISKAMPLLQDKLNEQHIEVVEDIPAD-LPPMQVDPELMRNC 372

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           L N    A  ++P GGK+T+       +N+F L            F     G   + ID 
Sbjct: 373 LFNFITNAAQAMPDGGKITLGAAFVAGDNLFRLT-----------FADQGSGIAPNDID- 420

Query: 179 HDIQFYYVILLA-------------HENKIRLLPEIIDDHNVVLSALLE 214
              Q Y+    A              E+   ++ E    +    + +L 
Sbjct: 421 KIFQPYFTTKEAGIGLGLAITERIIKEHGGEMVVESQLGNGTTFTIILP 469


>gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 970

 Score = 41.4 bits (96), Expect = 0.078,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 31/208 (14%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRL-------SSMSAIIRLKFMR 68
           LL + + H++ +P+  I +  ++L  ++  ++    L+         +S      L F R
Sbjct: 748 LLAAGVAHEVNTPLAVISSYAQMLSKQLQGDERRSALLEKITTQTFRASEIVNNLLNFSR 807

Query: 69  LAFGYTGSVD-SLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSR---ERAKI--- 118
                TGS + + + +  +       +       RV+V        L +      K+   
Sbjct: 808 -----TGSSEFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAPT-LPKIYGNTGKLQQV 861

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            LNLF+ A  ++P GG ++I+ ++ +      +   G+    PE   +I D    +    
Sbjct: 862 FLNLFLNAKDAMPSGGTLSITTRNGR-AVEVEVCDTGSGI-APEHIQRIYDPFFTTKKSP 919

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHN 206
                    L      + +   II +H 
Sbjct: 920 RQGHSGGTGL-----GLAVTYGIIQEHA 942


>gi|254521427|ref|ZP_05133482.1| sensory box histidine kinase/response regulator [Stenotrophomonas
           sp. SKA14]
 gi|219719018|gb|EED37543.1| sensory box histidine kinase/response regulator [Stenotrophomonas
           sp. SKA14]
          Length = 914

 Score = 41.4 bits (96), Expect = 0.079,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72
           I HD  + + A+   LELL+       V   +  +++ R  +  A    + + LAF    
Sbjct: 535 IAHDFNNMLTAVSMGLELLEMRVEQGRVDGLERYLEMARSGADRAAALTQRL-LAFSRRQ 593

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                       V  ++ +  + + I   I ++ R +      ++D  +     LLNL +
Sbjct: 594 TLAPSSVRVAALVSGMLDI--LNRSIGPSINIETRFEDFEDAVRVDAPQLE-NALLNLCI 650

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKI---NGNLARF 160
            A  ++P GG + IS          S ++    G+  R 
Sbjct: 651 NARDAMPGGGTIIISSSTEALAGTRSERLGLPAGDYVRL 689


>gi|75910540|ref|YP_324836.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704265|gb|ABA23941.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 759

 Score = 41.4 bits (96), Expect = 0.080,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 74/206 (35%), Gaps = 52/206 (25%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEV---MQLIRLSSMSAIIRLK----FMR 68
           L S I HD+ + +  I    +LL       ++     ++++ +++      +K    F R
Sbjct: 396 LASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINAKRGADLVKQVLSFAR 455

Query: 69  LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAK 117
                 G     I L       ++ +++++       V        W          +  
Sbjct: 456 ------GVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSGDSTQLHQV- 508

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            L+NL + A  ++P GG +TIS +                    E + ++        ++
Sbjct: 509 -LMNLCVNARDAMPNGGTLTISAE---------------NLLIDENYARM-------NLE 545

Query: 178 SHDIQFYYVILLAHENKIRLLPEIID 203
           +   Q +Y+++   +  + + PE +D
Sbjct: 546 AK--QGHYIMVTVSDTGVGISPENLD 569


>gi|121602917|ref|YP_989140.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis
           KC583]
 gi|120615094|gb|ABM45695.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis
           KC583]
          Length = 845

 Score = 41.4 bits (96), Expect = 0.081,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 17/151 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG--IEDEVMQL--IRLSSMSAIIRLKFMRLAFG-YTGS 76
           I HD  + + AI  S +LL       +     L  I+ ++  A   ++ + LAF      
Sbjct: 477 IAHDFNNVLTAILMSCDLLLNTHRVSDPAHADLTNIKNNANRAAALVQQL-LAFSRKQTL 535

Query: 77  VDSLIG----LGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAH 127
               +     L DI  +I   +    ++++      W+ E    S +    ++NL + A 
Sbjct: 536 RPEKVDFTEFLSDIRNLILPLLGNHIQLKIIHGRDLWSVEVDQASFQCV--VMNLVINAR 593

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            ++P GG VTI+  +   +    L   G  A
Sbjct: 594 DAMPDGGTVTIATNNITKQQSAELNYAGLAA 624


>gi|170695559|ref|ZP_02886703.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170139546|gb|EDT07730.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 509

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 30/182 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  + N LE+L          ++I      AI R        L F R       
Sbjct: 164 HDFNNLLAVLSNGLEVLALQARTPLDKKMI-DGMRRAIDRGASLTQQLLSFAR------- 215

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRERAK---ILLNLFMV 125
                  + D+  +I +F  +  R        ++         S + A+    LLNL + 
Sbjct: 216 QQPLQAQVHDLNGLIREFTPMLSRAGNRNTHVELGLHATHAFASVDAARFEAALLNLVVN 275

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++P GG VTI+    ++E   +  +  G+  R            +   + +   + +
Sbjct: 276 AVDAMPTGGAVTITTDTVQSETEVTPALPAGHYVRIS---VADTGSGMSEDVLAQAFEPF 332

Query: 185 YV 186
           + 
Sbjct: 333 FT 334


>gi|167647630|ref|YP_001685293.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167350060|gb|ABZ72795.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 653

 Score = 41.4 bits (96), Expect = 0.082,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 40/225 (17%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           + HD  + + A+  SLEL+ +   ED  +  LI  +   A     L    LAF      +
Sbjct: 289 LAHDFNNLLTAVLGSLELVRKRLPEDPRISPLIDNAIHGAQRGAVLTQRMLAF--ARKQE 346

Query: 79  ---SLIGLGDIEQVIEDFIAVDKRVQVSWT------GEKIDLSRERAK-ILLNLFMVAHA 128
                + L  +   +           +                  + +  LLNL + A  
Sbjct: 347 LRLEPVDLPALATGMAGLFQRSVGPAIQIQTSFPAGLAPALTDANQLENALLNLVVNARD 406

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDSHDIQFY 184
           ++P GG + I   +       ++         P  + ++        +++   +   + +
Sbjct: 407 AMPEGGVIRIEASNE------TVAAASASGLPPGDYVRLAVIDTGQGMDAETRARATEPF 460

Query: 185 YV---------------ILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Y                  LA ++  RLL          +   L 
Sbjct: 461 YTTKGVGKGTGLGLSMVHGLAEQSGGRLLIRSEAGEGTAMEMWLP 505


>gi|194292456|ref|YP_002008363.1| histidine kinase of the two-component signal transduction system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226360|emb|CAQ72309.1| Histidine kinase of the two-component signal transduction system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 684

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 69/174 (39%), Gaps = 19/174 (10%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS-- 59
                + L   L + + H+I +PI  I  +L++  +      +     ++LI        
Sbjct: 447 ITSEKLALAGQLTAGVAHEINNPIAVIQGNLDVARDILGPAADPVRHELRLIDEQVRRIY 506

Query: 60  --AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKID-L 111
                 L+F+R            + +G++     D +         RV++++T  +   +
Sbjct: 507 LLTNRLLQFVRPE--AYAGNTERLDVGEVAGGCVDLVRHMLKDAAIRVELAFTATRRVRI 564

Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEK 163
           SR   + +++NL   A  ++P GG +T++ QD   +     ++  G   R  + 
Sbjct: 565 SRSELQQVIVNLLTNAIHAMPDGGTLTLATQDWDAHGVTLHVRDTGRGIRAEDL 618


>gi|186685040|ref|YP_001868236.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467492|gb|ACC83293.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1298

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 12/133 (9%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMRLAFG 72
            I HD+ + +  I  + +LL    ++DE      + L+  ++      +K    F R   G
Sbjct: 932  IAHDLNNILTPILAAAQLLQGTFLQDEERSGQLLALVESNAQRGAALVKQILSFARGFKG 991

Query: 73   YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
                +     + +I Q++++       +      +   ++    ++   L+NL + A  +
Sbjct: 992  ERILIQVKYLIAEIIQIVKETFPKSIELSAIIPEDTWPITGNTTQLHQVLMNLVVNARDA 1051

Query: 130  LPRGGKVTISVQD 142
            LP GGK+ ISV++
Sbjct: 1052 LPDGGKIAISVEN 1064


>gi|148547450|ref|YP_001267552.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148511508|gb|ABQ78368.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 553

 Score = 41.4 bits (96), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 18/156 (11%)

Query: 22  ICHDIISPIGAIHNSLEL----LDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFG-YT 74
           I HD  + + +I  +LEL    L +  + D    ++L R ++  A   ++ + LAF    
Sbjct: 181 IAHDFNNLLASILGALELAGQRLVQQRLADTAQLLELSRHNAQRAAALVQRL-LAFSRQQ 239

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK----ILLNLFMVAH 127
             V   + +  +   + D I+      V +  +        R  A+     LLNL + A 
Sbjct: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYQDQTHAGLWPIRIDAQQLENALLNLCINAR 299

Query: 128 ASLPRGGKVTISVQD---SKNENIFSLKINGNLARF 160
            ++P GG ++I   +      E        G   R 
Sbjct: 300 DAMPLGGTLSIGCANVDVQGAEARQRGLAAGQFLRI 335


>gi|168700450|ref|ZP_02732727.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 842

 Score = 41.4 bits (96), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRL----SSMSAIIRLKFMRLAFGYTG 75
           HD  + +  I+   +LL E     +     +  IR     S+      L F R       
Sbjct: 475 HDFNNMLQVINGYADLLAEGLPPGDERAGVVAEIRKAGERSAALTSQLLAFARQQVAAPR 534

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHASL 130
            VD      D   ++   I  D R+        W         +  ++LLNL + A  ++
Sbjct: 535 LVDVGAAAADTAGMLRPLIGEDVRLVTDLPRGGW--PVFVDPGQLEQVLLNLAVNARDAM 592

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           P GG +T++ +        +   +     +           + + + +   + ++ 
Sbjct: 593 PAGGTLTVAARSEAVGPAEAALADMKAGEYTVLSVTDTGCGMPADVQARVFEPFFT 648


>gi|115373530|ref|ZP_01460827.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115369536|gb|EAU68474.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 812

 Score = 41.4 bits (96), Expect = 0.086,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNS--------------LELLDEVGIEDEVMQLIRLS 56
            L AL  L + + H++ +P+GAI NS              L L+D VG E + +  I   
Sbjct: 582 RLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVGEEADRLNRIVD- 640

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLS--- 112
                  L F R     + S   +     +E V+   +A     ++V W  E        
Sbjct: 641 -----DLLNFARP---PSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPPVLA 692

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQI 167
             R   +  LNL + +  ++ +GG + +  +     ++E        G+     +   +I
Sbjct: 693 DERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVRARI 751

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    V  +   +   +  E           LL 
Sbjct: 752 FEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 798


>gi|257063842|ref|YP_003143514.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791495|gb|ACV22165.1| signal transduction histidine kinase [Slackia heliotrinireducens
           DSM 20476]
          Length = 556

 Score = 41.4 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 23/214 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAI----IRLKFMRLAFGYT 74
           H++ +P   I   +++L+E G  D+      ++ IR ++ S        L+  R+  G  
Sbjct: 334 HELRTPTTVIRAYIDMLEEEGDLDDEARRNAVKAIRTNAQSLSKLVDSILESARMEAGAV 393

Query: 75  GSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASL 130
               +++   DI   +E     +A DK + +  + G       +  K+L  L  +   ++
Sbjct: 394 KLEKTVVDAADIMVEVEKTLTPLAQDKSIDLQVSYGNTPLFMADANKLLHILENLGSNAI 453

Query: 131 PR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVESTIDSHD 180
                GG+V++S    +        ++ N     E   Q+V         +V   +    
Sbjct: 454 KYTGFGGEVSVSASLDEEAGEMRFVVSDNGIGISEADKQVVFEKFKQAGSSVSKPVSGSG 513

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        A  +   +L E         +  + 
Sbjct: 514 LGLALAKEYAELHGGSILLESALGQGSEFTVCIP 547


>gi|134299370|ref|YP_001112866.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134052070|gb|ABO50041.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 575

 Score = 41.4 bits (96), Expect = 0.087,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----LKFM 67
           L+AL  L + + H++ +PIG I   +EL+ +   +   +     +    + R    ++ +
Sbjct: 343 LIALGRLATGVAHELRNPIGIIKTLVELMKDEYSQVSGIDEFTKAVDEQVDRQNMVIQEL 402

Query: 68  RLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERA------K 117
            L FG    V      + D+ + +  F A   R   V V    ++  L +  A      +
Sbjct: 403 -LDFGRPTKVSIKECSVNDLLKGVLSFSAAMLRKENVTVHLHLDES-LPKIMADTEKLKQ 460

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           + +NL + A  ++P GG + I  + S+N    +    G      EK
Sbjct: 461 VFVNLIVNAAEAMPSGGTLDIKTEQSENLVTVTFSDTGEGIDLEEK 506


>gi|320160098|ref|YP_004173322.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319993951|dbj|BAJ62722.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 528

 Score = 41.4 bits (96), Expect = 0.089,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 31/226 (13%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLK----- 65
           DL+A++     HD+ SP+  I +SLE+L+      +DE ++ +   ++ +  R++     
Sbjct: 297 DLMAMVY----HDLRSPLSNIISSLEMLNMLLPVSDDENLRALLSIAIRSTGRMQRLINT 352

Query: 66  ---FMRLAFGYTGSVDSLIGLG----DIEQVIEDFIAVDKR---VQVSWTGEKIDLSRER 115
                RL  G   +  ++  +     +    I        +   VQ+      +++  + 
Sbjct: 353 LLDIYRLEAGQPITSRAMTEIAPLVYEAVDTILPVAENKGQQVDVQIEPNLPPLNIDADM 412

Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIV 168
             ++L+NL   A       GK+T+SV        F+++ NG            +KF ++ 
Sbjct: 413 IRRVLINLLDNATKYTLFKGKITLSVYRKGERVEFAVRDNGPGIPPDALEVIFDKFARLQ 472

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I    +   +  L    +   +  E   +     +  L 
Sbjct: 473 SERFPKGI---GLGLAFCRLAVRSHGGEIWVESKLNEGSCFTFALP 515


>gi|95931005|ref|ZP_01313733.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132901|gb|EAT14572.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 502

 Score = 41.4 bits (96), Expect = 0.090,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 60/144 (41%), Gaps = 22/144 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMRLAFGYTG 75
           H+I +P+  I  ++ +L +   +D+         +  I   + +A   L F     G  G
Sbjct: 279 HEIKNPLAGISGAVTVLADDLAKDDPRRQVVQDILAQIARLNKTATDLLNF-----GRPG 333

Query: 76  SVD-SLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRERAK-ILLNLFMVA 126
           S     + + D+ +    F+A            +++     +   R++ + +LLN+ + A
Sbjct: 334 SPQCDFVDVNDVVKQTLFFVAQHPEAKNIHQITELTRDLPPVWADRKQIQQVLLNIIINA 393

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             S+P GG +T+  + ++  +   
Sbjct: 394 LQSMPNGGSLTVQTELTREHDERR 417


>gi|70732212|ref|YP_261968.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346511|gb|AAY94117.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 567

 Score = 41.4 bits (96), Expect = 0.091,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGS 76
           + H+I +P+G I  + +LL    +    +   ++ +I   S    +  +F+  A      
Sbjct: 351 LAHEIRNPLGIIKTATQLLHRRANLPENDKRHLEYVISEVSRINDLITEFLDFAKPSAPI 410

Query: 77  VDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHAS 129
             + +    +E+++     +    +   ++        L   +R+  +  LNL + A  +
Sbjct: 411 RATQLARPLVEELLGFCTPELATHNIDARIDDQAPGATLHADARQLKQACLNLILNAIDA 470

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +P GG++T+ +    +E I S+   G   
Sbjct: 471 MPDGGRLTLGISQRDDETIISVSDTGQGI 499


>gi|95931397|ref|ZP_01314107.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132553|gb|EAT14242.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 497

 Score = 41.4 bits (96), Expect = 0.092,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 21/214 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS---AIIRLKFMRLA 70
           L S I H++ +P+ A    LELL    +E    D + + +  S          L F   A
Sbjct: 282 LTSGIAHELGNPLSASIGYLELLKKRCEEPKNRDLIERALNESHRMDQLIKDLLDFA--A 339

Query: 71  ----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123
                G+     S +     + +++     ++ +   W  +   +S    K+   L+NL 
Sbjct: 340 PDHESGHANCAPSDVLKHSCDMLLQQGALKERHLSTDWPEQLSHVSIPPIKLQQVLVNLI 399

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHD 180
           + A  +    G +TI+  ++ ++    ++ NG           F                
Sbjct: 400 LNARDATDSYGAITITATENDSKITIKVEDNGHGIEGQSLETIFDPFYTTKAPGK--GRG 457

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  Y    L H+ +  L            +  L 
Sbjct: 458 LGLYVSYQLVHDARGELQATSTQGKGSCFTVTLP 491


>gi|163783058|ref|ZP_02178053.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881738|gb|EDP75247.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 339

 Score = 41.4 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 28/227 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--- 60
           ++   LSS+  +AL    I H I +P+  I  +LE L++     E  ++IR +  +    
Sbjct: 123 SLSQKLSSVGFLAL---GIAHQINTPLSTILLALEELEDKLGTSEETEVIRSAVNTCKDY 179

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDL- 111
           + +L F+           S+    DI + ++D +             +++   G+   L 
Sbjct: 180 VDKLLFL-------VKRSSVKDFVDINKAVKDSVELLKMYAKERGVEIRLHLKGDGYILG 232

Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167
           +    + ++LNL + A    P G  V +  +  +N  +  ++  G      E    F   
Sbjct: 233 NESDIRHLVLNLVINALQVSPYGESVEVVSEVGENAWMLRVEDRGPGIEPDELSKIFIPF 292

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             G  +S  +   +    V  +  E    +               + 
Sbjct: 293 YQGKSKS--EGAGLGLAIVDSILREYGGSINVRSTPGEGSTFELSIP 337


>gi|153006016|ref|YP_001380341.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029589|gb|ABS27357.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 437

 Score = 41.4 bits (96), Expect = 0.094,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 26/173 (15%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----- 64
            +  L  L    + HD++SP   +   ++LL +        +L+   S S   RL     
Sbjct: 212 EATRLKDLFADILRHDLLSPAATLRMGIDLLAKNEASPAATRLLEKMSRS-CARLTDLIE 270

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSR 113
              K+ ++    +      +   D+ +V++D IA           R  +S  GE    + 
Sbjct: 271 HAAKYAKI----STLEQLELDTLDLRRVLQDVIADFQETLQEDGLRSSLSSLGELPVRAN 326

Query: 114 ERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +     +   +L     GG VT+ V+D+    + ++   G   R  +K
Sbjct: 327 PLVSEVF--ANLVSNALKYGRAGGTVTVGVEDAGEHWVVAVTDCGEGIRDEDK 377


>gi|317487012|ref|ZP_07945820.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316921694|gb|EFV42972.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 585

 Score = 41.0 bits (95), Expect = 0.095,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 77/221 (34%), Gaps = 25/221 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSS----MSAI 61
            LVAL  + + I H++ +P+ AI   L     E   E   E  +  ++            
Sbjct: 368 RLVALGNMAAGIAHEVRNPLSAIK-GLARFFMEASPEGSDESRMADIMTREVLRLDKVVG 426

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLS----RE 114
             L F R          + +GL ++ +   D +  D   ++++      +  LS    R+
Sbjct: 427 DLLDFAR----PDVLNLTDVGLNELVERARDMVRSDMDARKIRFEAELPEPPLSVRLDRD 482

Query: 115 RA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           R  ++LLNLF+ A  ++P GG++ +  +    E    +   G     PE+   I      
Sbjct: 483 RMTQVLLNLFLNAVQAMPDGGRLMVRARMEGTELALDVADTGCGI-APERLADIFSPYFT 541

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +   +   +          V      
Sbjct: 542 TKASGTGLGLSIVHKIVEAHDGTIEVASTPGEGTVFKLRFP 582


>gi|152986808|ref|YP_001345964.1| sensory histidine kinase CreC [Pseudomonas aeruginosa PA7]
 gi|150961966|gb|ABR83991.1| two-component sensor CreC [Pseudomonas aeruginosa PA7]
          Length = 474

 Score = 41.0 bits (95), Expect = 0.096,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 24/203 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78
           H++ SP+ AI  + ELLD     ++  + +   +  +  RL+      + LA        
Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVANIAGESE-RLQQLIERLLSLAQVEQRQGL 323

Query: 79  SLIGLGDIEQVIEDFIAVD-KRVQVSWTGEKIDLSRERA---------KILLNLFMVAHA 128
             +G  D+ +V E  +     R+Q      +  L    A         + L NL   A  
Sbjct: 324 EEVGPVDLREVAEALLEGQAARIQRQGLTVEKRLDGPCAIRGERFLVRQALANLLDNALD 383

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182
             P GG++ +S +         L   G        AR  E+F  +             + 
Sbjct: 384 FTPPGGRLRLSAEVDGKGVALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443

Query: 183 FYYVILLAHENKIRLLPEIIDDH 205
           F  V  +A  +  RL     +D 
Sbjct: 444 F--VAEVAQLHGGRLQVGNHEDG 464


>gi|317502227|ref|ZP_07960400.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088793|ref|ZP_08337703.1| hypothetical protein HMPREF1025_01286 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896342|gb|EFV18440.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330407316|gb|EGG86819.1| hypothetical protein HMPREF1025_01286 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 341

 Score = 41.0 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 78/216 (36%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAI----IRLKFMRL 69
           L S I H I +P+ A +   +LL + G+ DE     +  +++S           +K  RL
Sbjct: 123 LISDISHQIKTPVAAANTFAQLLGDTGLSDEERSEYIATLQMSLEKLTFLTNSLIKMSRL 182

Query: 70  AFGYTGSVDSLIGLGDI-EQVIEDFI--AVDKRVQVS---WTGEKIDLSRE-RAKILLNL 122
             G          L DI  Q ++     A DK + ++       +  L     A+ + N+
Sbjct: 183 ESGIIRLKPEQNSLNDIVMQAVKTVYAKARDKNITITFDCGQTFEALLDFNWTAEAVTNV 242

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
              A    P GG V + + +  +     +  NG      E    F +   G   + +D  
Sbjct: 243 LDNAVKYTPSGGVVDLKITEYPSYLRLDVSDNGIGIPEEEQAKIFGRFYRGKQSAGVDGV 302

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I  Y    + ++    +     D+     S  L+K
Sbjct: 303 GIGLYLTRDIVNKQNGYIKV-ASDEKGTTFSLFLKK 337


>gi|33469600|gb|AAQ19841.1| signal transduction protein [Alcaligenes faecalis]
          Length = 491

 Score = 41.0 bits (95), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 65/169 (38%), Gaps = 29/169 (17%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRL------- 55
           L +  L A+  + + + H+I +P+G + N+L+ L++ G  D      + L+         
Sbjct: 272 LVTQRLAAVGRVAAGVAHEINNPLGGMLNALDTLEKHGSPDPLTQKTVGLVSRGLSQIRA 331

Query: 56  --SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---ID 110
             S++    RL    +  G            D+  +IE  +   ++V + W       +D
Sbjct: 332 TVSALLVEARLDSPLMTLG---------DWEDLRTLIEPQLE-QRQVHLVWDVPDLPTLD 381

Query: 111 LSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           L     + + LNL + A  ++  GG V       ++     +   G   
Sbjct: 382 LPAHLIRQLTLNLLLNARNAVDSGGTVACVAVVERSALSIQVSNTGQHI 430


>gi|302038879|ref|YP_003799201.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300606943|emb|CBK43276.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 786

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 19/151 (12%)

Query: 84  GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISV 140
            D+  +++  I     + +      + +  +  ++   LLNL + A  ++P GG +TI  
Sbjct: 491 RDLMALLKSLIGEHISIVLQLDPLPLWVKADAVQLEQVLLNLAVNARDAMPHGGTLTIDT 550

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI-QFYYVIL----------- 188
           +    E ++    +   AR   +      G          I + ++              
Sbjct: 551 RQVSREEVWGTDHDSRTARTYVRLRVHDTGTGIDPATKAKIFEPFFTTKPPGRGTGLGLS 610

Query: 189 ----LAHENKIRLLPEIIDDHNVVLSALLEK 215
               + H++   +  E        +S  L +
Sbjct: 611 TVYGIVHQSGGTITVESAVGQGTTMSVFLPE 641


>gi|317052603|ref|YP_004113719.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316947687|gb|ADU67163.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 531

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDE--VGIEDEVMQLI---RLSSMSAIIRLKFMRLAFGYTGS 76
           I H+I +P+ AI   L+ L      +E E  +L+   R +       +  +R        
Sbjct: 317 ISHEIKNPLNAISMGLQRLSMEVPQLEPEQQELLYSMRSAVERTSRIVSALREYAHPVQP 376

Query: 77  VDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129
               I    +   +       F   D  V+V W       +      + L NL   A  +
Sbjct: 377 RCQQIDPQQLVSSVLSLYRNGFTQQDITVEVDWQFTGSLSADPELLCQALENLVKNALEA 436

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            P GG++T+ +   ++  +  L+ +G           +++  V S      +       +
Sbjct: 437 APHGGRLTVGLYRQEHHLVMILENSGYDGS-SVHMDHLLEPYVTSKTQGSGLGLPIARRI 495

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +  +L  E        ++ +L 
Sbjct: 496 VEAHGGQLFLESPQTGIFRVTVVLP 520


>gi|75910949|ref|YP_325245.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704674|gb|ABA24350.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 630

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIR---LKFMRLA 70
           L S I HD+ + +  I  + +LL+    ++   +L    I  +   A +    L F R  
Sbjct: 267 LASGIAHDLNNVLAPILMTAQLLESQIKDERSQRLLPILITNAKRGANLVKQVLSFTRGL 326

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
            G    +     +G+I+Q+I++       +    +     +S +  ++   L+NL + A 
Sbjct: 327 EGERTLLQLKHLVGEIQQIIKETFPKSIELAAHISQNLWTVSGDATQLHQVLMNLCVNAR 386

Query: 128 ASLPRGGKVTISVQD 142
            ++P+GG + I+ ++
Sbjct: 387 DAMPKGGTLKITAEN 401


>gi|256833022|ref|YP_003161749.1| histidine kinase [Jonesia denitrificans DSM 20603]
 gi|256686553|gb|ACV09446.1| histidine kinase [Jonesia denitrificans DSM 20603]
          Length = 360

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 53/156 (33%), Gaps = 14/156 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAFGYTG 75
           + H++ +P+ A+H  LE L +  +E     L          S      L   R+  G   
Sbjct: 135 VSHELRTPVAALHAQLENLVDGVVEPTPATLHTALTQTERLSRLISYLLDLSRIEAGAAE 194

Query: 76  SVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAH 127
                  +GD  +        +   K++      +  DL          +I+ NL   A 
Sbjct: 195 LRVKEFAVGDFLEDAVGALTMLEAGKQLDFVVDVDPGDLTITSDPERLRQIVTNLVQNAI 254

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              P GG VT+  ++  +E +      G      ++
Sbjct: 255 RHSPYGGTVTVVAREEGDEVLLDFLDEGPGIAVEDR 290


>gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 491

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIR 54
           MA N+   +  +         L + + HD+ SPI +I   LE   + +  +  E  Q   
Sbjct: 242 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVSMKDGDLPPEERQRYV 301

Query: 55  LSSMSAIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK 108
            +++    RL     +   L+   T  V+  I    I ++++D  +  + R +      +
Sbjct: 302 TTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 361

Query: 109 IDLSRERAKI----------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            DL    A++          L NL   A    P GG+V + + + + E   ++   G   
Sbjct: 362 PDLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNKQGEVCVAVADTGPGI 421

Query: 159 R---FPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P  F +    +     D     +       +   +   L  E       V    L
Sbjct: 422 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTVFRFRL 481

Query: 214 E 214
            
Sbjct: 482 P 482


>gi|159901168|ref|YP_001547415.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894207|gb|ABX07287.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 677

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 78/225 (34%), Gaps = 45/225 (20%)

Query: 24  HDIISPIGAIHNSL----------------ELLDEVGIEDEVM-----QLIRLSSMSAII 62
           HD+ +P+ AI N +                ELLD      + M      L+ +S M A  
Sbjct: 458 HDLRAPLTAIINGMTMVRRGFAGPINDQQRELLDIANNSSQEMVGMINTLLDISKMEA-G 516

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119
            L   R       S   ++     E++I    +VD  + +        +  ++    +IL
Sbjct: 517 ELVLNR----APCSAYEIVDRAS-ERLINSARSVDISINLDMALNLPIIDADQDKIVRIL 571

Query: 120 LNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGN------LARFPEKFTQIVD 169
            NL   A    P GG VTI V+      K    +S+   G        A+  +KF Q+  
Sbjct: 572 QNLLDNAIKFTPVGGSVTIRVRQLTDNEKQTICWSVIDAGPGIPESYRAKIFDKFVQVAG 631

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +        +  L +  +  R+  E ++      S  + 
Sbjct: 632 QRKGTGLG-----LAFAKLASEAHGGRIWVESVEGEGSTFSFTIP 671


>gi|332703497|ref|ZP_08423585.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553646|gb|EGJ50690.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 586

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 117 KILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           ++LLNL M + A+LP  GG+V ++ + + N+ + S+  NG     P+     ++    + 
Sbjct: 487 QVLLNLIMNSLAALPETGGQVIVTAEPAGNDMLLSVADNGRGFS-PDAREHALEPFFTTR 545

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       L  ++  RL  E  +    V+   L 
Sbjct: 546 AQGTGLGLAIAHKLVQDHGGRLEIESEEGRGAVVRVFLP 584


>gi|325109831|ref|YP_004270899.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970099|gb|ADY60877.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1434

 Score = 41.0 bits (95), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 16/150 (10%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--------LSSMSAIIRLKFMRLAFGY 73
            + H++ +P+  I   LE+L     + E ++ +R                 L   R+  G 
Sbjct: 1079 LAHELRNPLAPIRTGLEVLRVSDNDPETLEEVRGIMERQTQQLVTLVDDLLDVSRITRGK 1138

Query: 74   TGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMV 125
                   + L ++ +         I       +    ++           A+IL NL   
Sbjct: 1139 MELRKCEVRLREVARNAIDTARPLIDEAGHRLIESFPDQPITLFVDPHRFAQILSNLLNN 1198

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKING 155
            A    P GG +    +   +  +  ++ +G
Sbjct: 1199 AAKYTPDGGTIEFKGELDGDTAVIRIRDSG 1228


>gi|327482749|gb|AEA86059.1| sensory box histidine kinase [Pseudomonas stutzeri DSM 4166]
          Length = 591

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 29/218 (13%)

Query: 21  RICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS-------SMSAIIRLKFMRLA 70
           R  H++ +P+  +  +  LL E      +     L                  L F R  
Sbjct: 378 RASHELRTPVTGMQMAFSLLRERLRYPADSRESDLFDTVHEEMQRLVRLINDLLNFSRYQ 437

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERA-KILLNL 122
            G          + ++ +       V+        ++++      + L R++  ++L NL
Sbjct: 438 SGQQKLELEQCDVPELLEAARQRFEVNAAEQDVQLKLELQQPLPTLMLDRQQIERVLDNL 497

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTI 176
              A    PRGG+V +  +      I S++ NG        AR  E F QI      + +
Sbjct: 498 LSNALRHTPRGGEVRLLARHHGERLILSVEDNGEGIPYSQQARIFEPFVQIGRRRGGAGL 557

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +A  +  R+       H  +    L 
Sbjct: 558 GLAL-----CKEIAQLHGGRIGVHSRIGHGTIFYVALP 590


>gi|218782993|ref|YP_002434311.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764377|gb|ACL06843.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 739

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 30/151 (19%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAII----RLKFM 67
           LL   + HD+ + +  I +  +LL     E++      + +IR S + A       L   
Sbjct: 367 LLAGGVAHDLNNVLSGIVSYPDLLMLDCPEEDKTMRDSLAIIRDSGLRASAIVMDLLTLA 426

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKID--LSRERA 116
           R        V  +  L  +  VI+D++         A   R++V +T +     +     
Sbjct: 427 R------RGVMEMEALN-LNAVIQDYLNSPEYNKLHAYHPRLKVRFTPDPDLHNIKGSEV 479

Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSK 144
              K ++NL   A  S+P GG V IS  +S+
Sbjct: 480 HLRKSVMNLVSNAAESMPNGGDVHISTMNSR 510


>gi|319788264|ref|YP_004147739.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466776|gb|ADV28508.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 802

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 61/139 (43%), Gaps = 13/139 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + +  I  +L+L  +     E     + + + S+  A + ++ + LAF     + +
Sbjct: 582 HDFNNLLAPIMAALDLAADPQANPERRARTVAVAQQSAERAAMLVQRL-LAFARKQPLQT 640

Query: 80  -LIGLGDIEQVIEDFIA--VDKRVQVSWTGEKIDLS----RERAKI-LLNLFMVAHASLP 131
             + +  + + I   +    D R++V    +         R + ++ LLNL + A  ++ 
Sbjct: 641 VEVDVPALLEGIGGLMRSSFDPRIRVEVDADPGTPPAVGDRNQLEMALLNLGVNARDAMS 700

Query: 132 RGGKVTISVQDSKNENIFS 150
            GG +T++ + ++  +  +
Sbjct: 701 EGGTLTLASRGAEIVDGIA 719


>gi|312960921|ref|ZP_07775426.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
 gi|311284579|gb|EFQ63155.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
          Length = 435

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 33/232 (14%)

Query: 5   ICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED-------EVMQ 51
           I FN     + A L  R      I HD+ +PI  +    EL+D+ G +D       E+  
Sbjct: 211 IAFNAMQARIAAYLKERMQLLAAISHDLQTPITRMKLRAELMDDCGDKDKLWNDLGEMEH 270

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           L+R           + R   G T           ++ ++ D+  + K VQ+S     +  
Sbjct: 271 LVREGVA-------YARSVHGATEESRRTDLDSFLDSLVFDYQDMGKDVQLSGKSNAVIH 323

Query: 112 SRERA--KILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLK-----INGNLARFPE 162
           +R  A  ++L+NL      +L   G  ++ +  +D  + ++  +          LAR  E
Sbjct: 324 TRPHALRRVLVNL---TDNALKFAGAAQLRVEPKDGDSLSVTVMDRGPGIAEEELARVIE 380

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F ++ +    ST     +       LA      L     +   +     L 
Sbjct: 381 PFYRVENSRNRST-GGTGLGLAIAQQLAQALGGSLTLRNREGGGLCAELRLP 431


>gi|171910863|ref|ZP_02926333.1| integral membrane sensor signal transduction histidine kinase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 464

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 61/218 (27%), Gaps = 19/218 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-- 65
            +  L  L  + + + H+I +P+ AI    EL    G        I     S   R++  
Sbjct: 239 QAEKLAVLGRMTAALAHEIQNPVSAIKMHAELAALDGNAP-----IAEVIASEAARIEGL 293

Query: 66  -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERA 116
                F+         +  L  L +   V          VQV              R   
Sbjct: 294 VNQWMFLSRPEPPALQMVDLKPLLEAVVVTHGPQMRHAGVQVQLEVPGGIQIMADRRRLV 353

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++  NL + A  ++P GG   ++    +     S    G     PE   +  +       
Sbjct: 354 QVFSNLLINATQAMPLGGLTLVTAIQEQGMVKISFADEGKGFS-PEALARFAEFFYSERE 412

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I       +   +   L    +    VV   L  
Sbjct: 413 GGMGIGLTVANEIVKAHGGTLSVVNLARGAVVTVELSP 450


>gi|108759412|ref|YP_633337.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463292|gb|ABF88477.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 578

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 83/217 (38%), Gaps = 24/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSA---IIRLK------- 65
           +  R+ H+I +P+  I  SLE L   +         + + S+      + RL+       
Sbjct: 365 VARRLAHEIKNPLTPIRMSLETLQAAQEAKHPRFQDMFKESAGVVLEEVDRLRRIVDEFS 424

Query: 66  -FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKIL 119
            F R+         + + LG+  + V+  +      +Q+  T +   ++R    +  ++L
Sbjct: 425 HFARM----PKPQLAPVDLGELAQSVLALYATPPTGIQILPTLQTGVVARVDRDQLTQVL 480

Query: 120 LNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +NL   A  ++   GG + + V+ ++ + I  ++ +G      E   +I +    +    
Sbjct: 481 VNLVKNAEEAMASTGGTLRVRVRSTEADAIVEVEDSGPGIPL-EHRARIFEPYFTTKDGG 539

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       +  E+  +L       H    S +L +
Sbjct: 540 TGLGLAIASRILQEHGGKLEVGGEPGHGARFSLVLPR 576


>gi|322418889|ref|YP_004198112.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125276|gb|ADW12836.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 490

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVES 174
           ++L+NL M A  ++P+GGK+ +    S  + I  +  +G+    PE  +++ D     + 
Sbjct: 385 QLLINLIMNARDAMPQGGKLWLKGSCSGADVIIDVIDSGHGM-PPEHLSRVFDPFFTTKE 443

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +A     RL  +         +  L 
Sbjct: 444 PGKGTGLGLAIAARIAESCGGRLDVQSELGKGSRFTLTLP 483


>gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 380

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 71/199 (35%), Gaps = 28/199 (14%)

Query: 24  HDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSV 77
           H++ +P+ AI   +E L +     E    Q I          +    +  R+  G     
Sbjct: 164 HELRTPLAAIKGYIEGLMDGVIPAEGNTYQQIHDEINRLQRLVDDLQELSRVESGAFHLK 223

Query: 78  DSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHAS 129
             L+ L D+   I++          +  ++Q+      + + ++R  ++L NL   A   
Sbjct: 224 PELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIEPNLPPVLIDKDRILQVLTNLVGNALQY 283

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA-------------RFPEKFTQIVDGNVES-T 175
            P GGKVT+ +   + E + S+   G                R  +   +   G+    T
Sbjct: 284 TPSGGKVTVQISKQRTEILISVSDTGIGISPEHLPFIFNRFYRTDKSRARASGGSGIGLT 343

Query: 176 IDSHDIQFYYVILLAHENK 194
           I    ++ ++  + A    
Sbjct: 344 IAQALVKAHHGRIWAESGG 362


>gi|307725908|ref|YP_003909121.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586433|gb|ADN59830.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 509

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 30/182 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  + N LE+L          ++I      AI R        L F R       
Sbjct: 164 HDFNNLLAVLSNGLEVLAIQSRTPIERKMI-EGMRRAIDRGASLTQQLLSFAR------- 215

Query: 76  SVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAK---ILLNLFMV 125
                  + D+  +I +F          + +V+++          + A+    LLNL + 
Sbjct: 216 QQPLQAQVHDLNALIREFAPMLSRARNRNTKVELALQPGDTFALVDAARFEAALLNLVVN 275

Query: 126 AHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++P GG VTI  +  +++         G   R            + + + +   + +
Sbjct: 276 AVDAMPTGGTVTIGTRTVQSDADLPPGLAGGRYVRIS---VVDTGTGMPADVLAQAFEPF 332

Query: 185 YV 186
           + 
Sbjct: 333 FT 334


>gi|312130844|ref|YP_003998184.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
 gi|311907390|gb|ADQ17831.1| integral membrane sensor signal transduction histidine kinase
           [Leadbetterella byssophila DSM 17132]
          Length = 342

 Score = 41.0 bits (95), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGY 73
           + H++ +PI AI   ++LL +          V++ I   +          L   RL    
Sbjct: 130 LSHELKTPISAIIGGVDLLKDGNLAPAQRSMVLKEIETGALRLNTQVESLLNMSRL---E 186

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKI------LLNLFMVA 126
           +G++       DI ++I   I    +  +     E IDL     K+      L+ L ++ 
Sbjct: 187 SGTLKLKYDWTDINEMIFGVIEKMSKEHLRKIDFEPIDLP--LVKLDVGLIELVLLSLIR 244

Query: 127 HA---SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +A   S+P GGKV +S Q + ++ + +++  G      E+
Sbjct: 245 NAFRYSIP-GGKVCLSAQITNDQLVLTVEDEGPGIPEEER 283


>gi|146284366|ref|YP_001174519.1| sensory box histidine kinase [Pseudomonas stutzeri A1501]
 gi|145572571|gb|ABP81677.1| sensory box histidine kinase [Pseudomonas stutzeri A1501]
          Length = 595

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 29/218 (13%)

Query: 21  RICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS-------SMSAIIRLKFMRLA 70
           R  H++ +P+  +  +  LL E      +     L                  L F R  
Sbjct: 382 RASHELRTPVTGMQMAFSLLRERLRYPADSRESDLFDTVHEEMQRLVRLINDLLNFSRYQ 441

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERA-KILLNL 122
            G          + ++ +       V+        ++++      + L R++  ++L NL
Sbjct: 442 SGQQKLELEQCDVPELLEAARQRFEVNAAEQDVQLKLELQQPLPTLMLDRQQIERVLDNL 501

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTI 176
              A    PRGG+V +  +      I S++ NG        AR  E F QI      + +
Sbjct: 502 LSNALRHTPRGGEVRLLARHHGERLILSVEDNGEGIPYSQQARIFEPFVQIGRRRGGAGL 561

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +A  +  R+       H  +    L 
Sbjct: 562 GLAL-----CKEIAQLHGGRIGVHSRIGHGTIFYVALP 594


>gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 962

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK-FMRLAFGYT 74
           S + H++ +P+ ++    ELL    ++ E     +  I   +      +  F+ L    +
Sbjct: 593 STVSHELRTPLASVLGFAELLLTKKLKPERQQRYIATIYQEATRLTALINDFLDLQRMES 652

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKI---LLNLFMV 125
           G     +    I+QVI D   + +      R ++    EK  +S ++AK+    LNL   
Sbjct: 653 GRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTVVSGDQAKLHQVFLNLISN 712

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV 168
           A    P GG V +  +   N  +  ++  G        P  FT+  
Sbjct: 713 AVKYSPHGGHVRVGCRQDGNRLLVEVQDEGLGIPSEAIPHLFTKFY 758


>gi|78221775|ref|YP_383522.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193030|gb|ABB30797.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 499

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 75/228 (32%), Gaps = 30/228 (13%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           +  L ++  + + I H+I +P+  I  ++ ++  +   ED   ++I              
Sbjct: 265 ADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFSDEDPRKEIIGEVVEQVSRLDKTV 324

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKIDL 111
             L F    FG     +      D+  ++               + K + ++    +I +
Sbjct: 325 NDLLF----FGKPTPPEPTY--ADVNAILRKTLLFALQHKGGKNIAKSLDLADGLPEIFV 378

Query: 112 -SRERAKILLNLFMVAHASL-PRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ- 166
             ++  ++ LNL + A  ++   GG +T+  S+ D   +      I       PE     
Sbjct: 379 DPKQVQQVFLNLILNAIQAMQADGGTLTVGSSLVDLDGKGWVRTTIADTGPGIPEPIIGK 438

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       L  ++   L     D    V +  L 
Sbjct: 439 IFTPFFTTKAQGTGLGLAICHKLITQHGGTLSVTSEDGKGTVFTIDLP 486


>gi|326402800|ref|YP_004282881.1| putative two-component hybrid sensor and regulator [Acidiphilium
           multivorum AIU301]
 gi|325049661|dbj|BAJ79999.1| putative two-component hybrid sensor and regulator [Acidiphilium
           multivorum AIU301]
          Length = 632

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SMSAIIRLKFMRLAFGY-T 74
           + HD  + +  I  +LE+L+      E  +L+  +            RL    LAFG   
Sbjct: 267 LAHDFNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARL----LAFGRRQ 322

Query: 75  GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAK------ILLNLFMVA 126
                 I + ++   +           V +        L R  A        LLNL + A
Sbjct: 323 TLRPLAIDVNELVGKMAPLFRRTLGSPVMIETRLAAG-LPRTMADPGQIETALLNLALNA 381

Query: 127 HASLPRGGKVTIS 139
             ++P+GG++ I 
Sbjct: 382 RDAMPKGGRLVIE 394


>gi|163731784|ref|ZP_02139231.1| sensor kinase-like protein, putative [Roseobacter litoralis Och
           149]
 gi|161395238|gb|EDQ19560.1| sensor kinase-like protein, putative [Roseobacter litoralis Och
           149]
          Length = 765

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 404 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 459

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + + D    +   +     ++V ++ T + + L      R+  ++L+NL + A  
Sbjct: 460 LRPETLDMRDTLADLTHLLNRLVGEKVTLTLTHDPVLLPIRADKRQLEQVLMNLVVNARD 519

Query: 129 SLPRGGKVTIS 139
           ++P GG++ I 
Sbjct: 520 AMPNGGEIRIE 530


>gi|160884705|ref|ZP_02065708.1| hypothetical protein BACOVA_02694 [Bacteroides ovatus ATCC 8483]
 gi|156109740|gb|EDO11485.1| hypothetical protein BACOVA_02694 [Bacteroides ovatus ATCC 8483]
          Length = 1392

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 81/219 (36%), Gaps = 33/219 (15%)

Query: 22   ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGY 73
            I H+  +P+  I  ++E L    D     ++ + L+  SS          L+F RL    
Sbjct: 869  ISHEFRTPLTIIRGAIEDLSNQKDLPPAANKQLGLLTKSSNRLLRLIDQLLEFRRL---- 924

Query: 74   TGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGE----KIDLSRERA-KI 118
                ++ + L   E V E F          +A  KR++  +       ++ L R +  KI
Sbjct: 925  ---QNNKMELKLEETVAERFFYDIYLTFKDMAAKKRIEYLFESNDSTGRMLLDRSKMDKI 981

Query: 119  LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES---T 175
              NL   A  + P GGK+ + +  S   + F+L ++ +    P +  +++    E     
Sbjct: 982  AYNLLSNAFKNTPAGGKIVMRLDSSAENDTFTLSVSDSGPGVPAEKRKMLFVRFEQINYA 1041

Query: 176  IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +  +    LA  +K  +            S  + 
Sbjct: 1042 SDGTGVGLHLTAELAKVHKGNVAYSDSSLGGACFSLTIP 1080


>gi|148259594|ref|YP_001233721.1| PAS/PAC sensor hybrid histidine kinase [Acidiphilium cryptum JF-5]
 gi|146401275|gb|ABQ29802.1| PAS/PAC sensor hybrid histidine kinase [Acidiphilium cryptum JF-5]
          Length = 632

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SMSAIIRLKFMRLAFGY-T 74
           + HD  + +  I  +LE+L+      E  +L+  +            RL    LAFG   
Sbjct: 267 LAHDFNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARL----LAFGRRQ 322

Query: 75  GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAK------ILLNLFMVA 126
                 I + ++   +           V +        L R  A        LLNL + A
Sbjct: 323 TLRPLAIDVNELVGKMAPLFRRTLGSPVMIETRLAAG-LPRTMADPGQIETALLNLALNA 381

Query: 127 HASLPRGGKVTIS 139
             ++P+GG++ I 
Sbjct: 382 RDAMPKGGRLVIE 394


>gi|197121353|ref|YP_002133304.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171202|gb|ACG72175.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 530

 Score = 41.0 bits (95), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 63/219 (28%), Gaps = 17/219 (7%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA-------IIR 63
           +L + L S + HD+ +P+ AI  +  LL + G+ D  +   L       A          
Sbjct: 289 ELRSGLLSSVSHDLRTPLAAITGAATLLLDDGVNDPAIRRDLAATVVDEAERLERLVSNL 348

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL----SRERAK 117
           L   RL  G        + L ++     + +      R       +++ L         +
Sbjct: 349 LDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAGRPVAVAIPDELPLLSVDPILVQQ 408

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           + +NL   A    P G ++ +            +   G      E+          +   
Sbjct: 409 LFVNLLENATKHTPPGSEIAVRAVREGGTVAIEVADRGPGLPEGEEERIFERFQRAARPG 468

Query: 178 SHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +         +A  +  RL          V    L 
Sbjct: 469 VRGVGLGLPIARAIAQAHGGRLTAANRASGGAVFRLTLP 507


>gi|307824779|ref|ZP_07655002.1| multi-sensor signal transduction multi-kinase [Methylobacter
           tundripaludum SV96]
 gi|307734137|gb|EFO04991.1| multi-sensor signal transduction multi-kinase [Methylobacter
           tundripaludum SV96]
          Length = 659

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 70/215 (32%), Gaps = 19/215 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYTGSV 77
           S + H++ SP+ +I  + +LL+    +D+   +++     A    +F    L F    S+
Sbjct: 438 SMVSHEVRSPLASIKTATQLLELQAKDDDSAAILQRILRGAHRLTQFFDNYLTFDRLNSM 497

Query: 78  -----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLFMVAH 127
                   + L  + Q + D        ++  +     L +     +   + + L  +  
Sbjct: 498 QWVLCQMSVDLPALLQTLRDHYTSIATHEIRLSLAPAVLQKRWLYADAQLLPVLLDNLLE 557

Query: 128 ASL---PRGGKVTISV-QDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD 180
            +L   P G +V +S           S+   G      E    F +         +    
Sbjct: 558 NALKYSPSGSEVELSAYIGKDGGLCLSVSDQGVGIAADELDLVFNKFFRSAQVGRVVGAG 617

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  Y V  +A  +   +  +         +  L +
Sbjct: 618 LGLYLVRQIAGLHGGSVQMQSRPGQGTTATLTLPQ 652


>gi|218780111|ref|YP_002431429.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761495|gb|ACL03961.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 396

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 22/172 (12%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMS----AII 62
            L A+  L + + H+I +P+  I  S  L+ E       E E + LI   ++        
Sbjct: 162 KLAAIGRLAAGVAHEINNPLTTILTSAMLIQEDIPADNPEHEELALIAKEALRCRNIVSN 221

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK 117
            L F R     +    S   + DI       +       D R+     G +I    ++A+
Sbjct: 222 LLDFAR----QSEPCKSDQDVNDIVAEAAALVRKPANFKDIRLTCDLHGREIQAHCDKAQ 277

Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           IL   +NL + A  +   GG +T   +     N   + +       PE    
Sbjct: 278 ILQCLVNLALNAIDATEPGGTITFETKLLPEGNWMEITVADTGPGLPENIVD 329


>gi|46202628|ref|ZP_00052899.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 555

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 32/239 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           M + +  + + ++  A + S   HD+  P+  + + L LL       ++ +  + I  + 
Sbjct: 321 MERELQRSNAELENFAYVAS---HDLRQPLRMVSSYLTLLQRRLGESLDQDCREFIAYAV 377

Query: 58  MSA-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGE 107
             A          L + R+  G  G+    + LGD+ ++ +     +  +    ++ +  
Sbjct: 378 DGAQRMDHMITDLLGYSRI--GRGGAPQEKVDLGDVMKLAQANLGALIEENGADITVSEG 435

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNL----- 157
              +        ++  NL   A     +G   +V ++   S +E I S++ NG       
Sbjct: 436 LPVVMGNEVELERLFQNLISNAVKFQVKGRSPQVDVTWSSSTDEWIISVRDNGIGIDEAG 495

Query: 158 -ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            AR  + F ++V  +         I       +A  +  R+  E +     V    L K
Sbjct: 496 QARLFQIFQRLVGQD---EYPGSGIGLASCRKIAEHHGGRIWVESVPGEGSVFHVALPK 551


>gi|86156964|ref|YP_463749.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773475|gb|ABC80312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 247

 Score = 40.7 bits (94), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 10/208 (4%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEV--GIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72
           L  + + H++ +P+ A+   ++L L         E ++ +  +       L+ ++  A G
Sbjct: 36  LDGATLAHELKNPLTAVKALVQLGLGNPREAASHERLEHVARAVERMERILRDYLASARG 95

Query: 73  YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNLFMVAH 127
                 + + +G +   V++   A     +V              R   + L+NL     
Sbjct: 96  MAELAPARVEVGPLVSGVLQGLSARASEARVRLVTHGDATVEADPRRLEEALVNLVANGI 155

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            + P GG+V + V  S       ++  G     P+   ++      +    + +   +V 
Sbjct: 156 EATPPGGEVEVEVLSSAEGAELVVRDTGTGI-APDALQRLGTPFFSTRSGGNGLGVAHVR 214

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   +   L  E       V+ A L +
Sbjct: 215 SVIAMHGGSLQYESEPGKGTVVRATLPR 242


>gi|153003884|ref|YP_001378209.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027457|gb|ABS25225.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 441

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 1/117 (0%)

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           R+            R   + LLNL   A  + P GG+V + V+ + +E    ++  G   
Sbjct: 312 RLYAQGDATLEADPRRIKEALLNLVANAIEATPAGGEVVVEVRPAGDEAEIVVRDTGRGM 371

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P+   +I      +  D   +       +  ++   L  E    H   +   L +
Sbjct: 372 -PPDTLRRIGTPFFTTREDGTGLGVVLARSVIAQHGGSLRYESEPGHGTRVRVTLPR 427


>gi|291548310|emb|CBL21418.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 454

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 69/181 (38%), Gaps = 30/181 (16%)

Query: 1   MAKNICFNLSSM---------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-- 49
           M  N+  +L             + AL      HD+ +P+  I  + +LL E  ++DE   
Sbjct: 217 MKDNLKISLERQWNTEQTQKEQIAALA-----HDLKTPLTVIQGNADLLTETNLDDEQRL 271

Query: 50  -MQLIRLSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKR 99
               +  SS      ++ +    R A GY   ++S I L    Q +  ++       + R
Sbjct: 272 YAGYVVESSGQMQSYIQTLIDISRAAVGYQLHIES-IDLPAFMQHLFGYMESLCRTKEIR 330

Query: 100 VQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           +Q++       L  +R    + ++N+        P+GG + + VQ +      S+   G 
Sbjct: 331 LQMNTVSLPQMLKFDRVLIERAIMNVISNGLDYSPQGGTLYVDVQSNNGFVEISVTDEGT 390

Query: 157 L 157
            
Sbjct: 391 G 391


>gi|162453443|ref|YP_001615810.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161164025|emb|CAN95330.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 511

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 31/236 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR- 54
           A+     +  +  V  L + + HD+ +P+GA+ N+   L       ++G E  V Q +  
Sbjct: 264 AQEARMRMEKLAAVGQLAASVGHDLRNPLGAVRNANHYLKKRILGTDLGAEPRVAQFLSI 323

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105
                   +      L F R                 +  +++D    + +  RV+V   
Sbjct: 324 IEKELAACAKIISNLLDFAR-------ERRPRFAACALRPLVDDAISVVEIPPRVRVDND 376

Query: 106 GEKID----LSRERAK-ILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLA 158
                    + +++ + +L+NL   A  ++P  R G+V I+ + + +    S+  +G   
Sbjct: 377 VPDTLPVVEIDKDQFRQVLVNLIQNAAEAIPAEREGRVRIAAERTGDGVTLSVVDDGTGI 436

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I +    + +    +       +   +   +               L 
Sbjct: 437 S-EETLARIFEPLFSTKLKGTGLGLAISAGIVERHGGTIEATSALGSGTTFVVRLP 491


>gi|222054469|ref|YP_002536831.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221563758|gb|ACM19730.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 501

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 67/175 (38%), Gaps = 23/175 (13%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--- 65
           +  L ++  + + I H+I +P+  I  ++ ++ E     +    I    +  I RL    
Sbjct: 264 ADRLASVGEMAAGIAHEIKNPLTGIAAAITIIKEDFAPSDSRTTIVDEVLEQIKRLDKTV 323

Query: 66  ----FMRLAFG-YTGSVDSLIGLGD-IEQVI------EDFIAVDKRVQVSWTGEKIDL-S 112
               F    FG       +   +   I + +           ++K++++      + +  
Sbjct: 324 NDLLF----FGKPAQPEPAFTDINSTIRKTLKFASQHRGSKNIEKKLELQEDLPPVYVDP 379

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQ 166
           ++  ++LLNL + A  ++  GG +TI     K E  + L +        P +  +
Sbjct: 380 KQIQQVLLNLILNAMQAMHDGGTLTIRSAFEKKEQDWVLIMVKDTGQGIPAQILE 434


>gi|126732481|ref|ZP_01748280.1| sensor histidine kinase [Sagittula stellata E-37]
 gi|126707120|gb|EBA06187.1| sensor histidine kinase [Sagittula stellata E-37]
          Length = 420

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 14/152 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--Y 73
            ++ S + HD+ +PI  +   L LLD+   E      +          L F R   G   
Sbjct: 216 TMMLSGVSHDLRTPITRLRLGLSLLDDEDREPLERD-VEEMQRLIDTFLDFAR---GDAQ 271

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDLSRERAKILLNLFMVAHASL 130
            G  + +  +  I  ++ED     + V    +   GE     R   + + NL      + 
Sbjct: 272 AGPPEPVDPMALITSIVEDAQRAGQNVSLGALDGQGEAALRPRSMRRAIENLI---GNAT 328

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             G +  +S   +  E    +++  +    P 
Sbjct: 329 RYGTQCRVSA--NMTERSLRIRVEDDGPGIPP 358


>gi|307718408|ref|YP_003873940.1| sensor protein ZraS [Spirochaeta thermophila DSM 6192]
 gi|306532133|gb|ADN01667.1| sensor protein ZraS [Spirochaeta thermophila DSM 6192]
          Length = 678

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 71/211 (33%), Gaps = 28/211 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQL--IRLSSMSAIIR 63
           L S  + AL  L + + H+I +P+GAI + L  LL      +    L  I          
Sbjct: 456 LISERISALGALSAGLAHEINNPLGAISSHLAYLLSVEENPERRESLLWIEKEITRIGNL 515

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQV----SWTGEKIDLSR 113
           +K +      + +     G  D++Q + D I      A  KR+ +    +       +S 
Sbjct: 516 VKTI-----LSHARGRTEGPCDVDQTLRDTIGLLTPQARQKRIALSYTSTGPLPSALISE 570

Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD 169
              K + LN+   A  S+  GG + +  +   +  + +    G     P     F  +  
Sbjct: 571 AELKQVALNILKNAMESIGEGGSIQVEARAVDDALVIAFHDTGPGFPEPSESHLFAPLFT 630

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPE 200
              E T     I       +      R+   
Sbjct: 631 TKAEGTGLGMTI----THHIIQRAGGRIAVR 657


>gi|15595661|ref|NP_249155.1| sensory histidine kinase CreC [Pseudomonas aeruginosa PAO1]
 gi|254243560|ref|ZP_04936882.1| two-component sensor CreC [Pseudomonas aeruginosa 2192]
 gi|9946325|gb|AAG03853.1|AE004484_5 two-component sensor CreC [Pseudomonas aeruginosa PAO1]
 gi|126196938|gb|EAZ61001.1| two-component sensor CreC [Pseudomonas aeruginosa 2192]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 24/203 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78
           H++ SP+ AI  + ELLD     ++  + +   +  +  RL+      + LA        
Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVGNIAGESE-RLQQLIERLLSLAQVEQRQGL 323

Query: 79  SLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128
             +G  D+ ++    +          R++V    E     R       + L NL   A  
Sbjct: 324 EEVGKVDLREIAASLLEGQAARIQRQRLRVENRLEGPCEVRGEQFLLRQALANLLDNALD 383

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182
             P GG + +  +         L   G        AR  E+F  +             + 
Sbjct: 384 FTPPGGILRLLAEADGEGIALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443

Query: 183 FYYVILLAHENKIRLLPEIIDDH 205
           F  V  +A  +  RL     DD 
Sbjct: 444 F--VAEVAQLHGGRLQVGNRDDG 464


>gi|299131770|ref|ZP_07024965.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298591907|gb|EFI52107.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 845

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 15/147 (10%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGY-TGSV 77
           I HD  + + AI  + + LL+     D   Q I     +A      +R  LAF       
Sbjct: 476 IAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQLLAFSRRQTLR 535

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKILLNLFMVAHA 128
             ++ LGD    +   +     ++V++        W  +      E+   ++NL + A  
Sbjct: 536 PQVLDLGDALSDLTMLLKRLIGEKVKLDVVHGRDLWPVKVDVSQFEQV--IVNLAVNARD 593

Query: 129 SLPRGGKVTISVQDSKNENIFSLKING 155
           ++P GGK+ +   +   +++  L+  G
Sbjct: 594 AMPEGGKLAVKTSNVSAQDVARLQAKG 620


>gi|262198688|ref|YP_003269897.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262082035|gb|ACY18004.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 524

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 24  HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTG 75
           HD+ SPIGAI NS EL    L E     E++ +I  ++ +AI      L F R   G   
Sbjct: 318 HDLRSPIGAIVNSTELLRYELGEDSESRELLDIIEEAADNAIAVVDDVLDFTRE--GIPS 375

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL--SRERAKILLNLFMVAHA 128
             +  I   ++   +E  + V  R      +V+   E   L   R+  + L NL + A  
Sbjct: 376 RKECEI--AEVLGRLERSLEVRVRECGVNFRVTGPREGSLLCDPRKVHRALENLAVNALD 433

Query: 129 SL---PRGG-KVTISVQDSKNENIFSLKINGNLA 158
           ++   P     V I V    +E  F +  NG   
Sbjct: 434 AVASSPTSAPAVWIEVAQEADEVRFLVCDNGPGI 467


>gi|145589847|ref|YP_001156444.1| osmosensitive K+ channel signal transduction histidine kinase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048253|gb|ABP34880.1| osmosensitive K+ channel signal transduction histidine kinase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 897

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 85/236 (36%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH---NSLELLDEV--GIEDEVMQLIRL 55
           +A++    + S  L   L S I HD+ +P+ A+    ++LE+LD      + E+  L+R 
Sbjct: 653 VAQSSTVQIESERLRNSLLSAISHDLRTPLTALVGLTDALEMLDAPLTSEQKEIAVLLRE 712

Query: 56  SS----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKR-VQVSWTGEK 108
            +          L   RL  G          + +        +  A + R + V+   + 
Sbjct: 713 KALKMSSQVSNLLDMARLQSGAVQLNKQWFLIEEAIGAAIKSVESASEGRHITVTLPPDL 772

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING----NLARFP 161
             L+ +     ++ +NL   A+   P+   V+I    S  +++     +        +  
Sbjct: 773 PLLNFDAVLIERVFINLLENAYKYTPKNSSVSIGASVSSPQSVEIWVQDDGPGLPKGKEE 832

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLA--HENKIRLLPEIIDDHNVVLSALLEK 215
           + F +   GN E  I    +     I  A    +  ++  + +       +  L +
Sbjct: 833 DIFRKFERGNKEGAISG--VGLGLTICRAIIEAHGGKITGKTMAGGGARFTFSLPR 886


>gi|190574102|ref|YP_001971947.1| putative two component system histidine kinase/response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
 gi|190012024|emb|CAQ45646.1| putative two component system histidine kinase/response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 377

 Score = 40.7 bits (94), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 23/222 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAI-----HNSLELLDEVGIEDEVMQLIRLS----SMSAI 61
           ++ L   + + + HD+ +P+ AI       +LEL ++     + +Q +  S    +    
Sbjct: 152 ALKLNETMAAVLTHDLRTPLSAILLCTDKLALELPEDNAGAQQTLQYLEASTLRMARMVE 211

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGE---KIDLSRER 115
             L F R+  G      S   L D+ + +           R+ +   G+   + DL R  
Sbjct: 212 QLLDFSRIRSGGLRLEASACDLADVTRAVVAEAGSAHGADRIHLDLQGDTRLQGDLDR-L 270

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++  NL      +L  G +  + V D ++     L+++           ++ +    S 
Sbjct: 271 GQVAANLV---GNALTHGSEARVQV-DGRDPRGVLLRVSNAGRIDDALLPRLFEPFKASF 326

Query: 176 IDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             S    +  Y V      +  R+         VV  A+L +
Sbjct: 327 HQSKGLGLGLYIVDQFVRAHGGRIAARNEAGQ-VVFEAMLPR 367


>gi|182413565|ref|YP_001818631.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840779|gb|ACB75031.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1452

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 22   ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAI-IR------LKFMRLAFGY 73
            I HD  + +  I  +L L   +  IE + ++ +  S  +A   R      L F +     
Sbjct: 1095 IAHDFNNLLTVIMGNLSLAKIDPKIEPDTVRCLSESERAAARARDLTQQLLTFAK----- 1149

Query: 74   TGSVDSLIGLG--DIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLFMVA 126
             G     +     D+ +    F     +V+  +              + A+++ N+ + A
Sbjct: 1150 -GGEPMRMPTRLPDLVREAAQFALHGAKVRCDYQIASDLWPASVDRGQIAQVVHNIVINA 1208

Query: 127  HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
            + ++P GG++ I +Q+       S    G   R          G    T+     + YY
Sbjct: 1209 NQAMPTGGRIEIGLQNEMVLEPRSGLEPGRYVRM--TVADSGAGIPAETL-GRIFEPYY 1264


>gi|108760411|ref|YP_628670.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108464291|gb|ABF89476.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 875

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 79/222 (35%), Gaps = 26/222 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHN--------------SLELLDEVGIEDEVMQLIRLS 56
            L AL  L + + H++ +P+GAI N              ++ LLD VG E + +  I   
Sbjct: 648 RLAALGELSAVVAHEVRNPLGAIFNSVASIRRIVGPDSAAVPLLDIVGEESDRLNRI--- 704

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---R 113
                  L F R    +  +V     + D  +          RV++    +   ++   R
Sbjct: 705 ---VADLLTFARPPAPHPYAVPLSPLVEDAVRGALAEAPGQVRVELDLADDVPSVTVDER 761

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNV 172
              +  LNL + A  ++P+GG +  SV+ +       ++   +     P+   +I +   
Sbjct: 762 MMRQAFLNLAINAVQAMPQGGMLRASVRRATGTPEVEVQFVDSGPGISPDVRARIFEPFF 821

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +   ++ R+  E            L 
Sbjct: 822 TTKAKGTGLGLAVVKRIIESHQGRVALESQPGQGTTFRLYLP 863


>gi|301058125|ref|ZP_07199177.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447757|gb|EFK11470.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 489

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 76/173 (43%), Gaps = 17/173 (9%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LI 53
            + +   L   + L AL  + + + H+I +P+G I ++ EL+  +   +E        ++
Sbjct: 255 QRELETQLDQAERLAALGQMVAGVSHEIRNPLGIIRSTAELMGSMSSGNESQAKLSGLIV 314

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKI 109
             SS    I  +F+  A   T +      L +I     Q ++  +   K +       + 
Sbjct: 315 EESSRLNNIVTEFLDFARPQTPNF-QDCDLNEILHKNIQFLQRELETRKILLQDGLPHRS 373

Query: 110 DLSRERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              +   ++L    LN+FM A  ++  GG ++ISV + ++  + +++ +G+  
Sbjct: 374 LPLKADPQLLYRSFLNIFMNALQAMEDGGTLSISVSEDEDYYVVAVQDDGSGI 426


>gi|258405063|ref|YP_003197805.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797290|gb|ACV68227.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 803

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 20/137 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLK----FMRLAFG 72
           I HD  + +  I  +LE++       + + L     I+ S   A   ++    F R A  
Sbjct: 441 IAHDFNNVLHVISGNLEMMALRSNSQQAVGLNRIQTIQKSIDRASQLVQQMLLFSRKA-- 498

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRER-----AKILLNLFMV 125
              S    + L +  +     +     K + +                   ++LLNL   
Sbjct: 499 --ESYKQSVDLNEEVEQTLHILERSVPKMISIETFLPDGLPPISADPVQVEQVLLNLGSN 556

Query: 126 AHASLPRGGKVTISVQD 142
           A A++P GG+  +   D
Sbjct: 557 AEAAMPAGGRFIVETSD 573


>gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
 gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase
           [Prevotella copri DSM 18205]
          Length = 935

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 24/163 (14%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRLAFGY 73
           I H++ +P+  I + +E LL++ GI  +  +L+++   +A+         L F ++    
Sbjct: 412 ISHELRTPLTLIADPVEMLLEDTGIRGKSRELLKMVQRNALALQQLVSNILDFRKI---Q 468

Query: 74  TGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDLSRER---------AKILL 120
            G ++  +   DI + +     DF    +R Q+    +  DL             ++I+ 
Sbjct: 469 NGKMELKLYRFDIVKTLTMWVGDFQLTAERKQIRLHLDVDDLKGSHEMIADQEKISRIVF 528

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           NL   A    P GG++ +S++D        +K  G      E 
Sbjct: 529 NLLSNALKYTPAGGEIFVSLKDEGTNLRLDVKDTGKGISQDEA 571


>gi|116054193|ref|YP_788637.1| sensory histidine kinase CreC [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296386962|ref|ZP_06876461.1| sensory histidine kinase CreC [Pseudomonas aeruginosa PAb1]
 gi|313111909|ref|ZP_07797699.1| two-component sensor CreC [Pseudomonas aeruginosa 39016]
 gi|115589414|gb|ABJ15429.1| two-component sensor CreC [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310884201|gb|EFQ42795.1| two-component sensor CreC [Pseudomonas aeruginosa 39016]
          Length = 474

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 24/203 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78
           H++ SP+ AI  + ELLD     ++  + +   +  +  RL+      + LA        
Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVGNIAGESE-RLQQLIERLLSLAQVEQRQGL 323

Query: 79  SLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128
             +G  D+ ++    +          R++V    E     R       + L NL   A  
Sbjct: 324 EEVGKVDLREIAASLLEGQAARIQRQRLRVENRLEGPCEVRGEQFLLRQALANLLDNALD 383

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182
             P GG + +  +         L   G        AR  E+F  +             + 
Sbjct: 384 FTPPGGILRLLAEADGEGIALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443

Query: 183 FYYVILLAHENKIRLLPEIIDDH 205
           F  V  +A  +  RL     DD 
Sbjct: 444 F--VAEVAQLHGGRLQVGNRDDG 464


>gi|323703118|ref|ZP_08114772.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531895|gb|EGB21780.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
          Length = 687

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 77/174 (44%), Gaps = 21/174 (12%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL- 64
           L S+ L+  + + I H++ +P+  +   L+L+   ++     E  QL+      A   + 
Sbjct: 472 LDSLGLLGKMAAGIAHEVRNPLTTVRGFLQLMKGKEDSTKHKEYFQLMIDELDRANSIIT 531

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEKIDLSRE 114
           +++ LA        + +   ++  +I+D           +A +  V+++     + L+R+
Sbjct: 532 EYLSLA----RKNKTELESNNLNTIIKDIEPLITADAIHMAKNIEVKLT-DIPNLLLNRK 586

Query: 115 RA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +++LNL      ++P GG +T+       + + ++K  G   + PE   ++
Sbjct: 587 EINQLILNLVRNGLEAMPEGGTLTVKTFKDGEQVVLAVKDQGPGIK-PEVIKKL 639


>gi|325921185|ref|ZP_08183051.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325548327|gb|EGD19315.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 952

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 21/138 (15%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + HD  + + AI   LELL    E G  D +   + + + S+  A    + + LAF    
Sbjct: 584 LAHDFNNLLTAISVGLELLQTRIEQGKYDRLERYVDMAQSSAARATALTQRL-LAF---S 639

Query: 76  SVDSLIGLG-DIEQVIEDF---IAVDKRVQVSWTGEKI------DLSRERAK-ILLNLFM 124
              +L     ++E ++ D    IA      +S             +   + +  LLNL +
Sbjct: 640 RRQTLAPTALEVEALVRDMHDIIARTLGPSISLQLRPAAESWKVLVDAPQLENALLNLCI 699

Query: 125 VAHASLPRGGKVTISVQD 142
            A  ++P GG++TI++ +
Sbjct: 700 NARDAMPDGGELTIAIAN 717


>gi|332653310|ref|ZP_08419055.1| sensory box histidine kinase PhoR1 [Ruminococcaceae bacterium D16]
 gi|332518456|gb|EGJ48059.1| sensory box histidine kinase PhoR1 [Ruminococcaceae bacterium D16]
          Length = 312

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 17/219 (7%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI-------IRLK 65
            + AL+ S I H   +P+  +    +LL+E  +  +     +  S+ A          +K
Sbjct: 81  QISALI-SDISHQTKTPVANLQLYAQLLEEQPLTPQGKDCAKAISVQAEKLQNLIEALVK 139

Query: 66  FMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
             RL  G          +  ++     +   + +        V   G+ +  ++   + L
Sbjct: 140 ASRLETGILVLHPQNDELGPVVARAAAQYAPKAWDKEVSLTVVQGEGQAVFDAKWTEEAL 199

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTI 176
            NL   A    P GG + + VQ+ +  +   +   G         E F +    +     
Sbjct: 200 CNLLDNAVKYTPSGGSIRVEVQNYELFSAIQVSDTGPGIPEQEQAEIFGRFCRASGAYQQ 259

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D   I  Y    +A      +  E +       S  L +
Sbjct: 260 DGVGIGLYLTRQIAQHQGGYVKVESVLGKGSTFSLYLPR 298


>gi|149919887|ref|ZP_01908363.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149819334|gb|EDM78767.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 657

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLA 70
           L S I HD  + +  I      L    I+++  +L   I  ++  A       L F R  
Sbjct: 302 LASGIAHDFNNLLTVILGGASFLGMGAIDEDQRELVADIEDAAQHAAALTGQLLAFTRRE 361

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL---LNLFMVAH 127
                 V+    +   +++    +     + V    E   +  + ++++   +NL + A 
Sbjct: 362 VVQRRRVEVAGAIEQCQRLFARLLDHGIELHVEVAPELPAIRFDESQLIQIVMNLVLNAR 421

Query: 128 ASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
            ++P GG++ +            E   S++ +G      + + +I +    +      + 
Sbjct: 422 DAMPSGGRIELRAVTGSGPSGEPELHLSVRDDGEGM-DADTYARIFEPFFTTKRTGTGLG 480

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +      RL  E       V +  + 
Sbjct: 481 LATIKDIVVAAGGRLSVESALGQGSVFTCCIP 512


>gi|27380375|ref|NP_771904.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353539|dbj|BAC50529.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 509

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 54/159 (33%), Gaps = 24/159 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           M K +  +     L  L    + HD  + +  I  SL  L    D+       +  I  +
Sbjct: 144 MQKQLAESQKFDALGQLTGG-VAHDFNNLLMIISGSLHTLKRGADDGAKLQRAISAIETA 202

Query: 57  SMSAIIR----LKFMRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVS----- 103
           +          L F R            I L +    I +V+E  +    R+        
Sbjct: 203 TRRGAALTNQLLTFAR----RQSVNPQAIDLAERIGAIREVLEAGVGSAVRLAFDIAREV 258

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           W         E A  LLNL + A  ++P GG VTI  ++
Sbjct: 259 WPIRTDVSEFETA--LLNLVINARDAMPDGGTVTIRARN 295


>gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 922

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 69/181 (38%), Gaps = 20/181 (11%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           I HD+ + +  I    E+L     E     + +++I  +++ +   ++ + LAF    S+
Sbjct: 544 IAHDLNNLLTPILGYSEMLLKRIREPEKSKQYVEVIHHAALKSRELVRQL-LAFSSRQSL 602

Query: 78  D-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMVAHAS 129
           +   + L ++ +  E  +    R  +       +             +I++NL + A  +
Sbjct: 603 EFRTVDLNEVIRDFEQLLRRTIRADIDIRYHLHEQPLPMRGDASQLEQIIMNLAVNAEDA 662

Query: 130 LPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           +P GG++ +     V     E  F     G+ A       +     ++    SH  + +Y
Sbjct: 663 MPAGGELIMESSLLVIKKGEEKYFEGLAAGSYALL---TVRDTGEGMDQKTLSHLFEPFY 719

Query: 186 V 186
            
Sbjct: 720 T 720


>gi|119357351|ref|YP_911995.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354700|gb|ABL65571.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 823

 Score = 40.7 bits (94), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 22  ICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           I HD  + +G I      +LE LD        ++ IR ++  +   ++ + LAF      
Sbjct: 458 IAHDFNNMLGVILGHTEIALEQLDPSESAYADLEAIRKAAARSAGLIRQL-LAF--ARKQ 514

Query: 78  DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-----SRERAKILLNLFMVAH 127
             +  +  +  ++E  + + +R     + + W  E  +        +  +IL NL + A 
Sbjct: 515 TVMPKIISLNTMVEGMLTMMRRLIGENITLVWIPENQNAKIKIDPSQIDQILANLCVNAR 574

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA----RFPEKFTQIVDGNVESTID----SH 179
            S+  GG++TI            ++ N N A    R P  +  +   +  S ID     H
Sbjct: 575 DSIVGGGRITI------ETGRLCVQRNENTANHPCRIPGDYVTLAVTDNGSGIDKKHLPH 628

Query: 180 DIQFYYV 186
             + ++ 
Sbjct: 629 IFEPFFT 635


>gi|332652347|ref|ZP_08418092.1| putative His Kinase A (phosphoacceptor) domain protein
           [Ruminococcaceae bacterium D16]
 gi|332517493|gb|EGJ47096.1| putative His Kinase A (phosphoacceptor) domain protein
           [Ruminococcaceae bacterium D16]
          Length = 552

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 6/90 (6%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++L+NL   A  ++P GG++ I  +        ++   G     PEK  Q++ G     +
Sbjct: 455 QVLINLINNAVKAMPDGGQLEIRAEKEPEGVCLTVTDTGVGM-GPEKLEQVLHGAGTGGL 513

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
               +       L  EN  +L  E      
Sbjct: 514 GLSIV-----RRLLGENGGQLSMESGRGEG 538


>gi|85859323|ref|YP_461525.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85722414|gb|ABC77357.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 576

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 62/134 (46%), Gaps = 12/134 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72
           + + + H+I +P+ AI  S+ +L         ++ +M++I          +K F+ LA  
Sbjct: 345 MAAGLAHEIRNPLAAISGSIHMLKKDLKLDPTDERLMKIILRGKDQLENFMKDFLLLAKP 404

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDL---SRERAK-ILLNLFMV 125
             G  + +     I++++E  + +    + + V     +  L   ++   + ++ NL + 
Sbjct: 405 AAGEKEWMNLNALIDEILESLVYIPDWSENITVEKNYPEPSLLYANKREMQHVIWNLILN 464

Query: 126 AHASLPRGGKVTIS 139
           A  ++PRGG++ I 
Sbjct: 465 ALQAMPRGGRLHIR 478


>gi|220917252|ref|YP_002492556.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955106|gb|ACL65490.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 595

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 37/221 (16%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGY 73
           + HD+ +P+ AI      LL    + D     +  IR ++  A   ++      R   G 
Sbjct: 376 VSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSAAERAARLIRDLLDLTRARLG- 434

Query: 74  TGSVDSLIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKIL 119
            G +       D+ QV +  +                       W  ++I      A+++
Sbjct: 435 -GGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEASGDTHGQWDPDRI------AQVI 487

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176
            NL   A     RG  V + +     E   S+   G     P +  + +    G      
Sbjct: 488 GNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGT--PIPAETVRTIFEAGGRAAPDP 545

Query: 177 DSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      V  +A  +  R+     ++     +  L +
Sbjct: 546 TGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 586


>gi|197122378|ref|YP_002134329.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
 gi|196172227|gb|ACG73200.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
          Length = 747

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 77/191 (40%), Gaps = 22/191 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----K 65
            L AL  + + + H+I +P+ AI  +++ LD   + ++  +   +       RL     +
Sbjct: 477 RLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVN-RLNGVVTQ 535

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQV---SWTGEKIDLSRER 115
           F+      +  +   +    + +V+E              R+++    W       + + 
Sbjct: 536 FLDY----SRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQL 591

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ LNL + A  ++P GG++T+S + +++E  F  +          +F     G  +  
Sbjct: 592 KQVFLNLALNAFQAMPHGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGIPDDA 651

Query: 176 IDSHDIQFYYV 186
            +S  + FY  
Sbjct: 652 RESIFVPFYTT 662


>gi|299138654|ref|ZP_07031832.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
 gi|298599290|gb|EFI55450.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
          Length = 447

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 11/197 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +   +E+ DE+   ++++Q +          + + R A G T +   + 
Sbjct: 242 ISHDLQTPITRMKLRVEMADEIPEREKLLQDLTEIERLVHEGIAYARSAHGNTEAPSRID 301

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139
               IE ++ D+    K V +S       ++R  A  + L NL      +L  G    + 
Sbjct: 302 IGSFIESLVFDYQDTGKAVTLSSKINATMVTRPHALRRTLTNLI---DNALKFGSSAEVR 358

Query: 140 VQDSK-NENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHEN 193
           V+ +       S+   G      +  T +     +D +         +       L+   
Sbjct: 359 VEKTNSEAITISVLDRGPGIPEDQLETVLQPFFRLDQSRNRDTGGAGLGLAIAHQLSLAI 418

Query: 194 KIRLLPEIIDDHNVVLS 210
              L     DD  +V  
Sbjct: 419 SGTLTLRNRDDGGLVAE 435


>gi|255263006|ref|ZP_05342348.1| multi-sensor hybrid histidine kinase [Thalassiobium sp. R2A62]
 gi|255105341|gb|EET48015.1| multi-sensor hybrid histidine kinase [Thalassiobium sp. R2A62]
          Length = 770

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 72/194 (37%), Gaps = 23/194 (11%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78
           HD  + + AI    +LL    + G +D   +  I  ++  A   ++ + LAF        
Sbjct: 409 HDFNNLLTAISGHCDLLLLRHDQGDQDYSDLVQINQNANRAASLVRQL-LAFSRKQNLRP 467

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
            ++ L D    +   +     ++  ++ + +   L      R+  ++++NL + A  ++P
Sbjct: 468 EILDLRDTLADLTHLLNRLVGEKTTLTLSHDPSLLPIKVDKRQLEQVMMNLVVNARDAMP 527

Query: 132 RGGKVTISVQ----DSKNENIFSLKINGN--LARFPEKFTQIVDGNVESTIDSHDIQFYY 185
            GG++ I  +     S  E   ++   G+    R  +    I    +    +     FY 
Sbjct: 528 DGGEIRIETEAKNLKSPLERDRAIIPAGDYVTVRVLDDGVGISSEKLPKIFEP----FYT 583

Query: 186 VILLAHENKIRLLP 199
               +    + L  
Sbjct: 584 TKRTSEGAGLGLST 597


>gi|78223657|ref|YP_385404.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78194912|gb|ABB32679.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 367

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 18/222 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--- 65
           +  L AL  L + + H+I +P+G+I  + E+L +               +    RL    
Sbjct: 145 AERLSALGELSAMLAHEIRNPLGSIRGTAEILRDDFQPGHPKHEFLEILLKETDRLNRVV 204

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDLSRER--AK 117
             F+RL+    G   +     ++ +++     D  A   R+ +                +
Sbjct: 205 EDFLRLSRPGDGERKTCDLAAELRELVTLLGSDAAARGVRIGLEADEVPPVTGDPEKLRQ 264

Query: 118 ILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFP-EKFTQIVDGNV 172
             LNL +    +   GG VT+ V    +   +  +  L      A  P E   +I     
Sbjct: 265 AFLNLMLNGIQATGAGGTVTVRVKMFPRSGDDRPLVELAFADTGAGIPRESLERIFTPFF 324

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   +   +  E            L 
Sbjct: 325 TTKEGGTGLGLAITQRIVEGHGGTVTVESEPGQGTTFRVRLP 366


>gi|86135912|ref|ZP_01054491.1| sensory box histidine kinase/response regulator hybrid [Roseobacter
           sp. MED193]
 gi|85826786|gb|EAQ46982.1| sensory box histidine kinase/response regulator hybrid [Roseobacter
           sp. MED193]
          Length = 691

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRL--SSMSAIIRLKFMRLAFGY-TGSVDS 79
           HD  + +  I  +LELL D+V     +++ I    S+     +L +  L+FG     +  
Sbjct: 338 HDFNNLLSIILGNLELLKDQVEPNSPILKYIDQALSATKRGAKLTYDLLSFGRRAQLLPQ 397

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----RAKI---LLNLFMVAHASLPR 132
           ++ +  +   IED +       +S      D  +     + ++   +LNL + A  ++P 
Sbjct: 398 VLKIDTVLNGIEDMLRRTLPANISLDFRYDDHVKPVLLDQGQLENAVLNLVLNARDAMPS 457

Query: 133 GGKVTISVQD 142
           GG +T+SV +
Sbjct: 458 GGNLTLSVSN 467


>gi|83944498|ref|ZP_00956951.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. EE-36]
 gi|83844700|gb|EAP82584.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. EE-36]
          Length = 761

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    + G  D   +  I  ++  A       L F R       
Sbjct: 400 HDFNNLLTAISGHCDLLLLRHDPGDRDYSDLVQIDQNANRAAALVGQLLAFSR----KQT 455

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + + D    +   +     + V ++ + + I        R+  ++L+NL + A  
Sbjct: 456 LRPETVNMRDTLADLTHLLNRLVGETVTLTLSHDPILQPIRADKRQLEQVLMNLIVNARD 515

Query: 129 SLPRGGKVTISVQDSK 144
           ++P GG++ ++ ++++
Sbjct: 516 AMPMGGEIKVTTENTQ 531


>gi|83955441|ref|ZP_00964072.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. NAS-14.1]
 gi|83840085|gb|EAP79260.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. NAS-14.1]
          Length = 761

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 19/136 (13%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    + G  D   +  I  ++  A       L F R       
Sbjct: 400 HDFNNLLTAISGHCDLLLLRHDPGDRDYSDLVQIDQNANRAAALVGQLLAFSR----KQT 455

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + + D    +   +     + V ++ + + I        R+  ++L+NL + A  
Sbjct: 456 LRPETVNMRDTLADLTHLLNRLVGETVTLTLSHDPILQPIRADKRQLEQVLMNLIVNARD 515

Query: 129 SLPRGGKVTISVQDSK 144
           ++P GG++ ++ ++++
Sbjct: 516 AMPMGGEIKVTTENTQ 531


>gi|330967406|gb|EGH67666.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 403

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++D+ +Q+   I  S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDDKTLQVAQHILTSGQRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +RV     +      ++L R +  +I   L  +   ++ 
Sbjct: 242 PLSIHDAHGLDKTLEHVVSEIQRVHPARLIRSNIGALELIRCDHERIAQLLSNLVSNAIT 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185
            G    ++ V      + F L +       PE     +       I         +  Y 
Sbjct: 302 HGAFDSSVEVAAGVLGDRFVLSVANQGEPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIAQAHGGTLDVSSTQEGGTVFTFSMP 390


>gi|332188326|ref|ZP_08390052.1| sensory box protein [Sphingomonas sp. S17]
 gi|332011639|gb|EGI53718.1| sensory box protein [Sphingomonas sp. S17]
          Length = 661

 Score = 40.7 bits (94), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 74/224 (33%), Gaps = 42/224 (18%)

Query: 24  HDIISPIGAIHNSLELLDEVGIE-DEVMQLIR---LSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + +  +   L++L   G+  +   +LI     S+  A   ++ + LAF        
Sbjct: 308 HDFNNLLTPMVGGLDILSRSGVGTERQRRLIEGAIQSAERARALVQRL-LAF--ARQQPL 364

Query: 80  LIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS----RERAKI-LLNLFMVAHAS 129
            +   DI  ++          +  R+ +     +   S      + ++ LLNL + A  +
Sbjct: 365 QLRAVDIGTLVRGMAELVGSTIGPRISLVIEMPEGLPSARADHNQVEMALLNLCVNARDA 424

Query: 130 LPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           +P GG + IS       ++N+   S     +LA             ++       ++ ++
Sbjct: 425 MPEGGTLRISASARHLSAENDEGLSAGSYISLAVSDTGI------GMDEETAKRAVEPFF 478

Query: 186 ---------------VILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             LA +    L      D    +  LL 
Sbjct: 479 STKGLGKGTGLGLSMAHGLARQLGGTLTITTAPDAGTRVEILLP 522


>gi|218885805|ref|YP_002435126.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756759|gb|ACL07658.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 545

 Score = 40.7 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 30/240 (12%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQ 51
           MA  +  N    L +  + AL    + I H++ +PI  +  S E L E     I+ +  +
Sbjct: 286 MAHELAVNQEHLLQARKMAALGTFTAGIAHELNNPINNVLLSAEGLREDYGEAIDADGQE 345

Query: 52  LIRLSSMSAI-------IRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           +I      A          L F R      +A      + + + L   + ++   I++  
Sbjct: 346 MIGDIMQQAERASDIVRNLLDFSRTEHPTFVALHPADVIGATVNLLKNQVMLSG-ISLAV 404

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNL 157
            V       + DL R   ++ +NL +    + PRGG V +           F ++ +G  
Sbjct: 405 HVPADLPMVRGDL-RSLQQVFMNLLLNGIQATPRGGAVAVVAMGVPPGHVAFEVRDSGPG 463

Query: 158 ARFPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE+  + +     ST +      +       L H ++ R+     +    V + LL 
Sbjct: 464 --IPEEIREHIFEPFFSTKEVGKGTGLGLAVTYALVHRHEGRIEVHGGEGRGAVFTVLLP 521


>gi|330505346|ref|YP_004382215.1| sensory histidine kinase CreC [Pseudomonas mendocina NK-01]
 gi|328919632|gb|AEB60463.1| sensory histidine kinase CreC [Pseudomonas mendocina NK-01]
          Length = 473

 Score = 40.7 bits (94), Expect = 0.16,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 71/213 (33%), Gaps = 38/213 (17%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM---------------- 67
           H++ SP+ AI  + ELLD   +  E  Q    +      RL+ +                
Sbjct: 265 HELKSPLAAIRGAAELLD-GDMPTEQRQRFVANIQQESARLQNLIERLLHLAQVEQRQGL 323

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             R+A      VD L+    +        I       +S  GE+  L     + L NL  
Sbjct: 324 EERVAVPLVPLVDELLQAQQVRIAAAGLQIERTLPTGLSLRGERFLLR----QALANLLD 379

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIV---DGNVEST 175
            A    P GG++ I  +      +  L   G        AR  E+F  +     G   + 
Sbjct: 380 NALDFTPPGGRICIVAERQGERIVLCLFNQGEAIPDYALARLTERFYSLPRPNGGRKSTG 439

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  + +Q      +A  +   L    ++D   V
Sbjct: 440 LGLNFVQ-----EVAELHGGELHIGNVEDGVEV 467


>gi|197122464|ref|YP_002134415.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172313|gb|ACG73286.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 618

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 37/221 (16%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGY 73
           + HD+ +P+ AI      LL    + D     +  IR ++  A   ++      R   G 
Sbjct: 399 VSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSAAERAARLIRDLLDLTRARLG- 457

Query: 74  TGSVDSLIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKIL 119
            G +       D+ QV +  +                       W  ++I      A+++
Sbjct: 458 -GGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEAAGDTHGQWDPDRI------AQVI 510

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176
            NL   A     RG  V + +     E   S+   G     P +  + +    G      
Sbjct: 511 GNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGT--PIPAETVRTIFEAGGRAAPDP 568

Query: 177 DSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      V  +A  +  R+     ++     +  L +
Sbjct: 569 TGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 609


>gi|118443713|ref|YP_877290.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134169|gb|ABK61213.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 553

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDG 170
           +I+LNL   A    P+GGK+ +++ D  ++   +++ NG            ++FTQ+ D 
Sbjct: 413 RIILNLLSNAVKFTPKGGKIKVNIHDDGDKLRITVRDNGIGIPEDKIHMIFDRFTQV-DK 471

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   + +   I  Y V  L   +  ++  E +          L 
Sbjct: 472 SFTRSTEGSGIGLYLVKALVEMHNGKVSVESVYGKGSEFIIDLP 515


>gi|83312412|ref|YP_422676.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947253|dbj|BAE52117.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 782

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 25/158 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRLAFGY 73
           I HD  + +G I  +LELL +    DE         ++  R  +      L F R A   
Sbjct: 418 IAHDFNNLLGIITGNLELLQKNLANDEKANRRLDTALKSARRGADLTRRLLAFSRQAPTV 477

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAK-ILLNLFMVA 126
            G+    I + D    + D +          + ++     K  ++R   +  LLNL + A
Sbjct: 478 VGNDP--IDINDAVTGMLDMLQRSLTQIVQVKTKLDPALWKTVVNRSEFEDALLNLAINA 535

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             ++P GG + I   +        + +    ARF    
Sbjct: 536 RDAMPDGGTLAIETSN--------IVVEAEHARFDPNL 565


>gi|299132907|ref|ZP_07026102.1| histidine kinase [Afipia sp. 1NLS2]
 gi|298593044|gb|EFI53244.1| histidine kinase [Afipia sp. 1NLS2]
          Length = 432

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HDI + +  I + L LL+     ++   ++     +        R   G        I
Sbjct: 104 IVHDINNLLAVISSGLRLLECQDDAEDRKAIVGKLQETITRSAFLTRRLLGDARPRAKPI 163

Query: 82  G-------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
                   L  I   ++     D  +++    +    + +   +   LLNL   A  ++P
Sbjct: 164 DGYVDGRRLAAIASSLDRAFHPDITIRMEIAPDLWAFNADAEDLYFALLNLCRNAADAMP 223

Query: 132 RGGKVTISVQD-----SKNENIFSLKINGNLARFPEKF 164
            GG +TI+ ++        +    + +  +    PE+ 
Sbjct: 224 EGGIITIAARNVEHSAGATQGFVEIVVADDGMGMPEEV 261


>gi|261856579|ref|YP_003263862.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
 gi|261837048|gb|ACX96815.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
          Length = 476

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 23/213 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-----TGS 76
           + H++ SPI AI  ++ELL +    +  ++L   +  +   RL+  R+  G        +
Sbjct: 262 LAHELKSPIAAIRGAIELLPDETDSERRIRL-ETNIATETTRLQ--RIVDGVLNLARAEN 318

Query: 77  VDSLIGLGDIE--QVIEDFIA------VDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125
              L    DI    +++D +        +K + V  T     +S  R    + + NL   
Sbjct: 319 RGRLDERQDIAFDDLVQDVVNERADRLANKSLHVKTTLSPTKVSGSRFLLRQAVGNLLDN 378

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD-GNVESTIDSHDI 181
           A    PR G + I+V    ++   +++ +G        P  F +       +S   S  +
Sbjct: 379 AIDFSPRNGVLEINVSQEDDQVQLTIRDHGPGIPDYAQPRLFERFYSTPRPDSGERSSGL 438

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +A  +   +               L 
Sbjct: 439 GLNLVQEVARLHGGHIELHNHPHGGAEACLNLP 471


>gi|254465485|ref|ZP_05078896.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
 gi|206686393|gb|EDZ46875.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
          Length = 654

 Score = 40.3 bits (93), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 80/225 (35%), Gaps = 26/225 (11%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII- 62
           S  L A+  + + + H+I +P+  I  +L+L            +E  +LI        + 
Sbjct: 430 SEKLAAVGEITASVAHEINNPVAVIQGNLDLARTVLGRHAEPVEEEFRLIDDQVYRISVI 489

Query: 63  ---RLKFMRLA--FGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRE 114
               L+F R     G  G +     + D   +    I          ++ TG+      E
Sbjct: 490 VSKLLQFARPEEYSGAAGLISPAEVVADCLVLTRHQIEATGIEAEAHLASTGQVRISRTE 549

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             ++++NL + A  ++P GG++T++ +D+ +  + + +  G           +++   + 
Sbjct: 550 LQQVIVNLILNAVQAMPGGGRLTLTAEDTPDGVLLAAEDTGTGIP-----ADLLNRIFDP 604

Query: 175 TIDSHDIQFYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLE 214
              +   Q   + L     L      R+  +            L 
Sbjct: 605 FFTTKQAQGTGLGLSISHQLVSRAGGRITVQSEPGRGTRFEIFLP 649


>gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 778

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 26/217 (11%)

Query: 24  HDIISPIGAIHNSLELL--DEVGIEDEVMQL-----IRLSSMSA----IIRLKFMRLAFG 72
           H++ +P+ AI    E+L  +  G       L     IR S           L   R+  G
Sbjct: 556 HELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSRIEAG 615

Query: 73  YTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFM 124
                   +   +I   +   +     A   R++++       L  E  ++   L+NL  
Sbjct: 616 RATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLG 675

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-------VDGNVESTID 177
            A    P GG++ +S +  +++    ++++ +      +   +       +DG +    +
Sbjct: 676 NAIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLARRYE 735

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           +   L  +        ++  L 
Sbjct: 736 GTGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLP 772


>gi|194337020|ref|YP_002018814.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309497|gb|ACF44197.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 650

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 24  HDI---ISPI--GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           HD+   ++PI   A    +EL    G ++EV  + R S  ++  +L +  LAF    S  
Sbjct: 296 HDLNNLLTPILGYAEMLEMELAGNAGQQEEVRAIQRAS--TSARKLIWQLLAF----SRT 349

Query: 79  SLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126
             + LG++E         +++   +    RV+       + L     ++   L+NL + A
Sbjct: 350 QTLELGEVELNAMLKEFGEMLRQSVGSGVRVEFELAPSLLPLHANAGQLEQVLVNLALNA 409

Query: 127 HASLPRGGKV 136
             ++P GG++
Sbjct: 410 RDAMPSGGRL 419


>gi|262196308|ref|YP_003267517.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079655|gb|ACY15624.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 540

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 18/195 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75
           H++ +P+ A+ +S+ELL    I+D+    I  S    + +L+          R+A G   
Sbjct: 188 HELRNPLAALTSSVELLAHGAIDDQRRDWIHDSMARQLAQLRSLVDDLLDVTRIAQGKMV 247

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------KILLNLFMVAH 127
              + + +  +     + ++     +      +  + R           ++++NL   A 
Sbjct: 248 LRKAPVDIASVVADALESVSSLVNARKHTLVCEPIVERLEVFGDRTRLEQVIVNLVANAA 307

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNL--ARFPEKFTQIVDGNVESTIDSHDIQFYY 185
                GG++ +S +        ++   G    A   E   +      E+      I    
Sbjct: 308 NYTEPGGRIELSARREGEHIRVAVVDTGVGIDAADIEHIFEPFAQVGEAGSGGLGIGLTL 367

Query: 186 VILLAHENKIRLLPE 200
           V  L   +   +  E
Sbjct: 368 VRQLVELHGGTVEAE 382


>gi|220916056|ref|YP_002491360.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953910|gb|ACL64294.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 530

 Score = 40.3 bits (93), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 17/219 (7%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA-------IIR 63
           +L + L S + HD+ +P+ AI  +  LL + G+ D  +   L       A          
Sbjct: 289 ELRSGLLSSVSHDLRTPLAAITGAGTLLLDDGVNDPAIRRDLAATVVDEAERLERLVSNL 348

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117
           L   RL  G        + L ++     + +      +        +L           +
Sbjct: 349 LDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAARPVAVAIPDELPLLSVDPILVQQ 408

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           + +NL   A    P G ++ +            +   G      E+          +   
Sbjct: 409 LFVNLLENATKHTPPGSEIAVRAAREGGMVAIEVADRGPGLPEGEEERIFDRFQRAARPG 468

Query: 178 SHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +         +A  +  RL          V    L 
Sbjct: 469 VRGVGLGLPIARAIAQAHGGRLTAANRAGGGAVFRLTLP 507


>gi|304309785|ref|YP_003809383.1| Sensory histidine kinase in two-component regulatory system with
           OmpR [gamma proteobacterium HdN1]
 gi|301795518|emb|CBL43716.1| Sensory histidine kinase in two-component regulatory system with
           OmpR [gamma proteobacterium HdN1]
          Length = 430

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 10/149 (6%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTG 75
           LL + I HD+ +P+  +  + ELL E    +    ++R         L +F  +AF    
Sbjct: 214 LLLAGISHDLRTPLTRMRLTAELL-EASDPELTEGMVRD-IEDMDAILDQF--IAF-VRD 268

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL----LNLFMVAHASLP 131
             D  + +GD+ +VIE+ IA  +   V    +   L     K L    L   ++ +A   
Sbjct: 269 GRDEQVDVGDLNEVIEEVIAQYESEDVILRSDLQALPPISLKRLSLKRLFANLIGNALRH 328

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF 160
            GG+V IS    + E    +   G     
Sbjct: 329 GGGEVDISSGVERGEIRLVVADRGPGLPV 357


>gi|284042187|ref|YP_003392527.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
 gi|283946408|gb|ADB49152.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
          Length = 463

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 12/170 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           + HD+ SP+ AI  + E L    + D     +  +      R        L   RL  G 
Sbjct: 243 VSHDLRSPLTAIATAGEALTSPNLTDAERAELAAAVTGESQRLSRLVDKLLDLSRLQGGA 302

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
                    + ++ +V  D         V    +   +  +  ++      +   +   G
Sbjct: 303 ADPRREWCSVEEVLRVAIDETPHPAGFNVGIDRDLPLVRADAVQLERAFANLLENAARYG 362

Query: 134 GKVTISVQDSKNENIFSLKIN----GNLARFPEKFTQIVDGNVESTIDSH 179
           G   ++V+     +   ++I     G   R  E+  +      E+  D H
Sbjct: 363 GDHPVAVRARVVGHRLLIRIVDRGPGIHGRELERIFEPFHRAPETRNDGH 412


>gi|58038744|ref|YP_190708.1| sensory transduction protein kinase [Gluconobacter oxydans 621H]
 gi|58001158|gb|AAW60052.1| Sensory Transduction Protein Kinase [Gluconobacter oxydans 621H]
          Length = 667

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 23/186 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYTGSVD 78
           I HD  + + AI  SLELL++    ++  + L+R ++ SA       R  L FG      
Sbjct: 299 IAHDFNNLLAAISGSLELLEDIAEFDEASLALLRNAADSAQRGAVLTRRLLQFGRPREAR 358

Query: 79  -SLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRERAK----ILLN 121
            S + LG +   + D +    + +            V      + L    A      LLN
Sbjct: 359 LSAVSLGQLLPGLTDLLRQSLKKRGVPASAAPCALCVEDVPPDLPLVWSDADQLEMALLN 418

Query: 122 LFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           L + A  ++  GG V IS     +      ++   + A   E   +     +   + +  
Sbjct: 419 LCVNARDAMADGGTVRISAHVVEQKRTGLPVECCPDRAVALEVVDE--GEGMPPEVAARI 476

Query: 181 IQFYYV 186
              ++ 
Sbjct: 477 FDPFFT 482


>gi|149923735|ref|ZP_01912129.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149815419|gb|EDM74959.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 686

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 9/103 (8%)

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI-GLGDIEQVIEDFIAV--DKRVQVSW 104
           E + LI  ++  A    + + LAF  T    S I  + ++ +     +    DKRV+++ 
Sbjct: 342 ENLALILDTAEQAAELTRKL-LAFSRTNQRSSAILDVHEVVRGTVALLRHSVDKRVEITL 400

Query: 105 TGEKIDLS----RERAK-ILLNLFMVAHASLPRGGKVTISVQD 142
             ++  LS    R + +  LLNL + A+ ++P GG + I+ + 
Sbjct: 401 DFDEGALSIQGDRAQVQNALLNLGINANQAMPEGGTLEIATRQ 443


>gi|189425993|ref|YP_001953170.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189422252|gb|ACD96650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 415

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 73/197 (37%), Gaps = 19/197 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS---AIIRLKFMRLA 70
           L + + H++ +P+  I    +LL     E    +   +++  S          L + R  
Sbjct: 203 LGAVLAHEVRTPLAGIKGFAQLLRERVQESREREYAGKIVAESERLEGLVTDLLTYTRQE 262

Query: 71  FGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDL-SRERAK-ILLNLFMVAH 127
               GS   L  + D  + + E+ +     +Q++    +      +R + +LLNLF  A 
Sbjct: 263 TMQAGSAVVLELVQDAWDHLAEEALQAKVALQITGAVSRPVACPADRLRQLLLNLFTNAQ 322

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGN-------LARFPEKFTQIVDGNVESTIDSHD 180
            ++P+GG + + + D   +    +  +G           F   +T    G+       H 
Sbjct: 323 QAMPQGGDLRVDLSDDGEQATILISDSGPGFAEESLKRAFDPFYTTRASGSGLGLAVCHK 382

Query: 181 IQFYY--VILLAHENKI 195
           I   Y   + LA+    
Sbjct: 383 IAAGYGGTVRLANARSG 399


>gi|322421490|ref|YP_004200713.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127877|gb|ADW15437.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 879

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 23/161 (14%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVM----QLIRLSSMSAI 61
            +   M+ V  L   + HD  + + AI    EL L +VG ++E      +++  S  +A 
Sbjct: 502 MHAQKMEAVGQLAGGVAHDFNNILSAIIGYSELTLRKVGADEEARHYVDEILAASHRAAT 561

Query: 62  IRLKFMR--LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKID 110
                 R  LAF  +      + + D+ +V+  F +   R         V        + 
Sbjct: 562 ----LTRSLLAF--SRKQPVSLAVIDLNEVVGGFQSFLSRLIKEDIELKVACGTERLPVL 615

Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
             R +  ++L+NL   A  ++PRGG + ++ +       F 
Sbjct: 616 ADRGQVEQVLMNLVANARDAMPRGGSLVVTTRRMTLGRDFV 656


>gi|163746277|ref|ZP_02153635.1| sensor kinase-like protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380162|gb|EDQ04573.1| sensor kinase-like protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 525

 Score = 40.3 bits (93), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 163 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 218

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + + D    +   +     ++V ++ + + +        R+  ++L+NL + A  
Sbjct: 219 LRPETLDMRDTLADLTHLLNRLVGEKVTLTLSHDPVLAPIRADKRQLEQVLMNLVVNARD 278

Query: 129 SLPRGGKVTISVQDSK-NENIFSLKINGNLARF 160
           ++P GG++ I  + +  +  +   +++    RF
Sbjct: 279 AMPAGGEIRIVTEVTTLDHPLERDRVSVPAGRF 311


>gi|327537523|gb|EGF24242.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1347

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 53/153 (34%), Gaps = 16/153 (10%)

Query: 22   ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGY 73
            + H++ +P+GA+ N++ ++        + +  + +++             L   R+  G 
Sbjct: 982  LSHELRNPLGAVTNAIAIMSSEETKPDVTERALGVVKRQLGQMSRLLDDLLDVSRITHGK 1041

Query: 74   TGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                     L    +   +     A    ++++       L          ++ +NL   
Sbjct: 1042 IELRKQQTDLTKMIEQAVIATQSRADGADLELTVALPSTPLIVDGDPARLEQVTMNLLTN 1101

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            A    P GGK+ + ++D        ++ NG   
Sbjct: 1102 AVKYTPPGGKIRLELKDDGQNAYLKVQDNGAGI 1134


>gi|107099449|ref|ZP_01363367.1| hypothetical protein PaerPA_01000461 [Pseudomonas aeruginosa PACS2]
 gi|218889204|ref|YP_002438068.1| sensory histidine kinase CreC [Pseudomonas aeruginosa LESB58]
 gi|254237306|ref|ZP_04930629.1| two-component sensor CreC [Pseudomonas aeruginosa C3719]
 gi|126169237|gb|EAZ54748.1| two-component sensor CreC [Pseudomonas aeruginosa C3719]
 gi|218769427|emb|CAW25187.1| two-component sensor CreC [Pseudomonas aeruginosa LESB58]
          Length = 474

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 24/203 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78
           H++ SP+ AI  + ELLD     ++  + +   +  +  RL+      + LA        
Sbjct: 265 HELKSPLAAIRGAAELLDGEMPAEQRARFVGNIAGESE-RLQQLIERLLSLAQVEQRQGL 323

Query: 79  SLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128
             +G  D+ ++    +          R++V    E     R       + L NL   A  
Sbjct: 324 EEVGKVDLREIAASLLEGQAARIQRQRLRVENRLEGPCEVRGEQFLLRQALANLLDNALD 383

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQ 182
             P GG + +  +         L   G        AR  E+F  +             + 
Sbjct: 384 FTPPGGILRLLAEVDGEGIALRLFNQGPAIPDYALARLTERFYSLPRPASGRKSTGLGLN 443

Query: 183 FYYVILLAHENKIRLLPEIIDDH 205
           F  V  +A  +  RL     DD 
Sbjct: 444 F--VAEVAQLHGGRLQVGNRDDG 464


>gi|167033383|ref|YP_001668614.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166859871|gb|ABY98278.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 551

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 73/181 (40%), Gaps = 19/181 (10%)

Query: 22  ICHDIISPIGAIHNSLEL----LDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFG-YT 74
           I HD  + +G++  +LEL    L E    D    ++L R +++ A  +++ + LAF    
Sbjct: 181 IAHDFNNLLGSLLGALELAEQRLREQRHADTARMLELCRNTTIRAATQVQRL-LAFSRQQ 239

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
             +   I +  +   ++D IA      +          W        ++    LLNL + 
Sbjct: 240 TLIPQPIDVQCLVAGMQDLIASSTGPHIDFHDQTLAGLWQIRID--PQQLENALLNLCIN 297

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  ++P GG ++IS  +S      + +++    R+           + + +    ++ ++
Sbjct: 298 ARDAMPLGGILSISCANSDLAVAEAGQLDLPAGRYLHIRVTDTGMGMSNEVMQRALEPFF 357

Query: 186 V 186
            
Sbjct: 358 T 358


>gi|146306183|ref|YP_001186648.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
 gi|145574384|gb|ABP83916.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas mendocina ymp]
          Length = 479

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 76/213 (35%), Gaps = 28/213 (13%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG 72
           + L S I HD+ +PI  +   +ELLD+  ++      +  + +    A+  +K       
Sbjct: 279 SQLFSAISHDLRTPITRLRLRVELLDDEALQAKFSRDLDELEVLVKGALQCVK------- 331

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
               +   I   D+  ++   I       RV V          +  A  + + NL     
Sbjct: 332 -DTDIHENIEPVDLNHLLHGLIEPYLGTGRVTVDGAARYPYPGKPLALRRCIGNLL---D 387

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            +L  G +  + ++D     +  +   G      +K  Q+ + +      +   Q Y + 
Sbjct: 388 NALKYGERAHLHIEDDAEAFVLHVDDEGPGV-PEQKLEQVFEPHFR---LASQQQGYGMG 443

Query: 188 L-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           L     LAH +   L    + +  + ++  L +
Sbjct: 444 LGIARNLAHSHGGELSLRNLREGGLRVTLWLPR 476


>gi|86357748|ref|YP_469640.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86281850|gb|ABC90913.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 583

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + I      A  R + +  +    GS    
Sbjct: 375 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 433

Query: 81  IGLG-DIEQVIEDF-------IAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
                D+  ++          +    R+++        +S + A +   +LNL + A A+
Sbjct: 434 YPSPVDVASLLRGMADILEIAVGTKCRIKLELDARLPVVSLDAALLEQSVLNLCLNASAA 493

Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155
           +P GG + I     ++  + S+  +G
Sbjct: 494 MPMGGVIVIGATADQDALLISVTDSG 519


>gi|77464081|ref|YP_353585.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77388499|gb|ABA79684.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 945

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 19/199 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           L S + HD+ + + AI  S  L+ E   G  +   Q I  ++  A   ++   L  G   
Sbjct: 541 LASGLAHDLNNLLAAIGGSALLIQEMQSGAAEVHAQRILAATEQAGALVRRF-LTLGKRQ 599

Query: 76  SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128
           S  S I     L +   +++  +    R+ ++     I +     +  +++LNL + A  
Sbjct: 600 SNRSRIDLCPLLQEAADLVQAGLRNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARD 659

Query: 129 SL----PR--GGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
           ++    PR  G ++++++  +    +      G      R+           +E  + + 
Sbjct: 660 AISTAPPREGGHEISVTLAPAGPAQLVQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQAK 719

Query: 180 DIQFYYVILLAHENKIRLL 198
             Q Y+    A    + L 
Sbjct: 720 VFQPYFSTKGAAGTGLGLA 738


>gi|332185367|ref|ZP_08387115.1| sensory box protein [Sphingomonas sp. S17]
 gi|332014345|gb|EGI56402.1| sensory box protein [Sphingomonas sp. S17]
          Length = 832

 Score = 40.3 bits (93), Expect = 0.19,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 68/181 (37%), Gaps = 24/181 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAI-IRLKFMRL-AFGYTGSVDSL 80
           HD  + +  I  +L+LL + G+     Q L+  ++ SA   R    RL AF         
Sbjct: 470 HDFNNLLTPIVGTLDLLQQKGLGGAREQRLVAGAAQSAERARTLVQRLLAF--ARRQPLQ 527

Query: 81  ---IGLGDIEQVIEDFIAVDKRVQV------SWTGEKIDLSRERAKI-LLNLFMVAHASL 130
              + +  +   ++D +A     Q+      +      D    + ++ LLNL + A  ++
Sbjct: 528 LISVDMAALVAGMQDLVASTTGPQILVEINVAPDLPPADADPNQVEMALLNLAVNARDAM 587

Query: 131 PRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           P GG + I+       +     +  +L   G   R          G    T+ +  ++ +
Sbjct: 588 PGGGTLRITLAAEHLAEGRLIGSHGALLPAGRYVRLS--VADTGSGMHAETL-ARAVEPF 644

Query: 185 Y 185
           +
Sbjct: 645 F 645


>gi|315185572|gb|EFU19341.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 678

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 28/211 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQL--IRLSSMSAIIR 63
           L S  + AL  L + + H+I +P+GAI + L  LL      +    L  I          
Sbjct: 456 LISERISALGALSAGLAHEINNPLGAISSHLAYLLSVEDDPERRESLLWIEKEITRIGNL 515

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQV----SWTGEKIDLSR 113
           +K +      + +     G  D+++ + D I      A  KR+ +    +       +S 
Sbjct: 516 VKTI-----LSHARGRTEGPCDVDRTLRDTIGLLSPQARQKRIALSYTSTGPLPSALISE 570

Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD 169
              K + LN+   A  S+  GG + +  +   +  + +    G     P     F  +  
Sbjct: 571 AELKQVALNILKNAMESIGEGGSIQVEARSVDDGLVIAFHDTGPGFPEPSEAHLFDPLFT 630

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPE 200
              E T     I       +      R+   
Sbjct: 631 TKAEGTGLGMTI----THHIIQRAGGRIAVR 657


>gi|86747162|ref|YP_483658.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86570190|gb|ABD04747.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 921

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD+ + +  +   +E+L E   +   ++ + L    A+ R        L F R       
Sbjct: 546 HDLNNILTVLTGGIEILAEGVSDRPALRDVALMVDQAVTRASDLTNGLLSFARKQPLQPR 605

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLFMVAHASL 130
           S+D    + +  +++     +   ++V +              + +  L+NL + A  ++
Sbjct: 606 SIDVNALMQETARLLRS--TLGGDIEVEFEPAPGLRPALADSSQLSSALINLAINARDAM 663

Query: 131 PRGGKVTISVQDSKNENIFSLK 152
           PRGG + ++  ++  +  ++ +
Sbjct: 664 PRGGTLRLAAGNADLDQRYADQ 685


>gi|322436994|ref|YP_004219206.1| response regulator receiver sensor signal transduction histidine
           kinase [Acidobacterium sp. MP5ACTX9]
 gi|321164721|gb|ADW70426.1| response regulator receiver sensor signal transduction histidine
           kinase [Acidobacterium sp. MP5ACTX9]
          Length = 519

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 19/178 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSM 58
           + S  L A   L + I H+I +P+ AI N + L+D          G   E +  +   + 
Sbjct: 281 IQSEKLAAAGRLSAAIAHEINNPLEAITNLMYLIDTSEEITPTLKGYVQEALSELSRLTH 340

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLS--RER 115
            A   L F R   G     D    + D   + ++ F A    V+  +    + LS  +  
Sbjct: 341 IARQSLGFYRELTGAA-LFDLNESVDDTLNIYLKRFDAKHIHVERHYHPGPLQLSAVKGE 399

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS----LKINGNLARFPEKFTQIV 168
            + ++ NL + A+ +LP  G +T+S   S +    +    L++  N +  P      +
Sbjct: 400 VRQVVSNLLVNAYDALPTNGCLTVSTDTSTDAEGLTDLVILRVTDNGSGIPPNVVAHI 457


>gi|308270674|emb|CBX27285.1| hypothetical protein N47_I07050 [uncultured Desulfobacterium sp.]
          Length = 1252

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNV 172
            ++++NL + A  ++P GGK+TI  ++   ++ ++     ++A  P  +  +        +
Sbjct: 997  QVIMNLVVNARDAMPYGGKITIETENVNIDDGYAHT---HVAVIPGPYVMLSISDTGVGM 1053

Query: 173  ESTIDSHDIQFYYV 186
               I +H  + ++ 
Sbjct: 1054 PDEIKAHIFEPFFT 1067


>gi|260892433|ref|YP_003238530.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260864574|gb|ACX51680.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 611

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 15/214 (7%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRL 69
            L +L  L + + H+I +P+ AI+  L+L  + G   ++ +  +R         ++ +  
Sbjct: 387 RLASLGRLVAGVAHEIRNPLTAINCYLQLWQKSGRFPEKPLNTMREEINRLDNLVEKL-- 444

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT---GEKIDLSRERAKILLN 121
                   +      ++ +++ D +         R++  +     E      +  ++L N
Sbjct: 445 -LCLAKPAEVKKVPYEVNRLVRDSLRFFEEVVGIRIETDFASDLPEVPLDPEQMGRVLQN 503

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL-ARFPEKFTQIVDGNVESTIDSHD 180
           LF  A  ++  GG +T+    + +     +++        PE   +I +    +      
Sbjct: 504 LFFNACEAMAGGGVLTVRTYKAGDGRHAVIEVADTGCGIPPEHLKEIFEPFFTTKPQGTG 563

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   +  R+  E        +   L 
Sbjct: 564 LGLSLAKEVVEAHGGRIEVESELGKGTTMRIYLP 597


>gi|260428142|ref|ZP_05782121.1| sensor histidine kinase [Citreicella sp. SE45]
 gi|260422634|gb|EEX15885.1| sensor histidine kinase [Citreicella sp. SE45]
          Length = 426

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 19/174 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            ++ S + HD+ +PI  +   L +L++   E      +          L F R       
Sbjct: 222 TMMLSGVSHDLRTPITRLKLGLSMLEDEEREPLERD-VEDMQRLIDAFLDFAR-----GD 275

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +        D  +++E  +A  +R             GE         + L NL      
Sbjct: 276 TQGGEAEPTDPIELVEGIVADARRAGKDVTVASTEGAGEVTLRPAAMRRALENLI---GN 332

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
           ++  G +  +SV  ++      ++ +G     PE+    +       +D    Q
Sbjct: 333 AVRYGTRCEVSVALTEKSLRLRVEDDGPGI-APERREDAL--RPFVRLDPARNQ 383


>gi|224588314|gb|ACN58938.1| putative two component fused sensor/regulator transcriptional
           regulator [uncultured bacterium BLR7]
          Length = 642

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 32/219 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMR--LAFGYTGSVDSL 80
           HD  + + AI  SL LL +   ED  M +L+  ++  A   +   +  LAF      +  
Sbjct: 289 HDFNNLLMAILGSLSLLRKRLPEDNQMLRLLDNATAGANRGVALTQRMLAF--ARRQEID 346

Query: 81  IGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHASL 130
           +   ++  ++     +  R          +   +  ++     + ++ +LN+ + A  ++
Sbjct: 347 LVPLELPALVRGMTELLDRSVSAQAAIETRFPLSLSRVVADANQLELAVLNICVNARDAM 406

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV---- 186
           P GG + IS ++ +     +  +     R+           +     +H  + ++     
Sbjct: 407 PDGGTILISAREQQVGPGHATNL--PEGRYVCLAVSDTGEGMSEETLAHATEPFFTTKGV 464

Query: 187 -----------ILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +A +   RL+ +            L 
Sbjct: 465 GKGTGLGLSMVHGMAEQMGGRLMLKSTKGEGTTAEIWLP 503


>gi|146282050|ref|YP_001172203.1| sensor/response regulator hybrid [Pseudomonas stutzeri A1501]
 gi|145570255|gb|ABP79361.1| probable sensor/response regulator hybrid [Pseudomonas stutzeri
           A1501]
          Length = 763

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 27/218 (12%)

Query: 22  ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI-------RLSSMSAIIRLKFMR---L 69
           I HD  + +  I  S ELL       +     LI       R  +      L F R   L
Sbjct: 391 IAHDFNNLLAVIGGSFELLRKRLPPSDPRTESLIENGLQATRRGAGLVQRLLSFARKQEL 450

Query: 70  AFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAH 127
                   D +IG+ ++ ++ +E  I++D R  +     +  +   + +++L NL + A 
Sbjct: 451 RPSAVALPDLVIGMRELLKRSVETNISIDLRFPLD--LPQAYVDANQLEMVLINLVVNAR 508

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---------PEKFTQIVDG--NVESTI 176
            ++P GG + I  Q         +   G +            PE   +  D     +   
Sbjct: 509 DAMPDGGSICIEGQSRTAAEAGRIDAPGYVILIVRDDGIGMEPEVLARATDPFFTTKGPG 568

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       LA ++  RL           +   L 
Sbjct: 569 NGTGLGLSMAHGLAEQSGGRLQIHSRPGKGTTVEIWLP 606


>gi|322419782|ref|YP_004199005.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126169|gb|ADW13729.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 660

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 10/122 (8%)

Query: 37  LELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS-LIGLGDIEQVIEDFIA 95
           ++L +E    D+VMQ I  ++  A    + + LAF   G V +    L +I + +E F+ 
Sbjct: 320 MDLSEENPARDKVMQ-ISAAADRAANLTRSL-LAFSRKGEVKAAPANLNEIVKGVEKFLQ 377

Query: 96  V--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
               + + ++ +  +  L     S +  ++L+NL   A  ++P+GG++ +  +    +  
Sbjct: 378 RIIGEDIDLTTSLAEGALWAVVDSGQIEQVLMNLAANARDAMPKGGRLFVQTERHDIDAA 437

Query: 149 FS 150
           F 
Sbjct: 438 FV 439


>gi|86156451|ref|YP_463236.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85772962|gb|ABC79799.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 469

 Score = 40.3 bits (93), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 25/217 (11%)

Query: 19  CSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMS----AIIRLKFMRL 69
             R+ HDI++PI +   ++EL       E     E ++  R S           L F R 
Sbjct: 238 AGRVAHDIMNPIASAQMAIELELRDQEAEGAPAGERLERARRSLRRIQTLVAGLLGFAR- 296

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                G+        ++ +V++D +      A D  + +        ++  +  ++  + 
Sbjct: 297 ----AGARPETGATAELAEVVQDVLSGAEARATDAGMTLVAEVAPATVACAKGVLISLVA 352

Query: 124 MVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178
            +   ++    RGG+V +  + + +     ++ +G        ++  +         +  
Sbjct: 353 NLVENAVKYARRGGRVVVRTRANDDAVRVEVEDDGPGLPPDLGDRVFEPYVRGGARDVPG 412

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  LA  +  R+               L +
Sbjct: 413 LGLGLATVKRLAEAHGGRVGVRSEPGRGATFWFELPR 449


>gi|300864199|ref|ZP_07109084.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337811|emb|CBN54230.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 365

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMS----AIIRLKFMRLA 70
           + S I HD  SP   I  S E+L ++  ++E     +LI+L        A   L+F R  
Sbjct: 153 MVSTIIHDFKSPFTGIQLSSEMLQDLHPDEETAEWCELIQLQVQRMLGMADEVLEFSR-- 210

Query: 71  FGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
            G        +     L   E++   +      V +      + +  +     ++L NL 
Sbjct: 211 -GNAVLHKKTVNLSHTLQQFEKLNRVYFDSTH-VDLVVQTADVIIEADENKILRVLQNLV 268

Query: 124 MVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             A  +   +GGKV I ++  +      +  NG     PE   + +
Sbjct: 269 GNAVEAFDGKGGKVEIVLETDEKWAKIIISDNGPG--IPESIREHL 312


>gi|159900038|ref|YP_001546285.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893077|gb|ABX06157.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1022

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 34/172 (19%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAI--HNSLELLDEVGIEDEVMQLIRLSSM---SAI 61
           L +  L AL  L S I HD  + I  I  H  L L++    + E + +I  ++      +
Sbjct: 653 LQTERLRALGELSSGIAHDFNNLIAGILGHTQLLLIEAPEEQREGLAVIEQAARDGRHMV 712

Query: 62  IRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------- 111
            R++ F R              + D+  +I D I +   ++  W                
Sbjct: 713 ERIQQFTR------AQQPEDHEMVDLNTIINDVIKL---IRPRWRSRPASTMIQTRIEKG 763

Query: 112 --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                        ++L N+ + A  ++P+GG +TI  +  + + I  +   G
Sbjct: 764 QIPLIYGSPFALREVLTNVVLNATDAMPKGGILTIRTEQVEADVIMEVSDTG 815


>gi|152987097|ref|YP_001349505.1| sensor histidine kinase/response regulator hybrid [Pseudomonas
           aeruginosa PA7]
 gi|150962255|gb|ABR84280.1| sensor histidine kinase/response regulator hybrid [Pseudomonas
           aeruginosa PA7]
          Length = 571

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIRL-KFMRLAFGYT 74
           I HD  + +  I  SLEL+     +D   +LI         + + + RL  F R      
Sbjct: 217 IAHDFNNLLTPIMASLELIRRRLDDDRSGELIDGALQAAERARNLVGRLLTFAR----RQ 272

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKI-LLNLFMVAH 127
                   L ++ + + D I          R++VS +   + +  ++ ++ +LNL + A 
Sbjct: 273 TLKPQATALHELVEGMRDLIERSLGPSIAVRIEVSASLPAVVVDPQQLELAILNLAVNAR 332

Query: 128 ASLPRGGKVTISVQDSKNENIFSL-KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
            +L  GG++ I  +  +           G   R            +   + +  ++ ++
Sbjct: 333 DALGEGGRLEIGARTDQVVGGTVDGLAAGRYVRLD---VADNGAGMPGEVLARCMEPFF 388


>gi|327480298|gb|AEA83608.1| sensor/response regulator hybrid [Pseudomonas stutzeri DSM 4166]
          Length = 763

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 27/218 (12%)

Query: 22  ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI-------RLSSMSAIIRLKFMR---L 69
           I HD  + +  I  S ELL       +     LI       R  +      L F R   L
Sbjct: 391 IAHDFNNLLAVIGGSFELLRKRLPPSDPRTESLIENGLQATRRGAGLVQRLLSFARKQEL 450

Query: 70  AFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAH 127
                   D +IG+ ++ ++ +E  I++D R  +     +  +   + +++L NL + A 
Sbjct: 451 RPSAVALPDLVIGMRELLKRSVETNISIDLRFPLD--LPQAYVDANQLEMVLINLVVNAR 508

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF---------PEKFTQIVDG--NVESTI 176
            ++P GG + I  Q         +   G +            PE   +  D     +   
Sbjct: 509 DAMPDGGSICIEGQSRTAAEAGRIDAPGYVILIVRDDGIGMEPEVLARATDPFFTTKGPG 568

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       LA ++  RL           +   L 
Sbjct: 569 NGTGLGLSMAHGLAEQSGGRLQIHSRPGKGTTVEIWLP 606


>gi|323699710|ref|ZP_08111622.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323459642|gb|EGB15507.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 320

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 22/160 (13%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRLAFGYTG 75
           CH++ SP+  I N+ ELL     + E  +LI+L+ ++A          L+F R       
Sbjct: 106 CHELKSPLIGIVNAFELLRMTEDQGEREELIQLAGVAARKLGILVDGVLEFSRQE--SMA 163

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAK--------ILLNLFMVA 126
              ++    ++   + D   +  R + ++ T E  D +    +        + LNL   A
Sbjct: 164 PAPTVFSPAELLASVRDMSLLQVRSRGLALTTETADGTPPLVRGGESVLRLVALNLVGNA 223

Query: 127 HASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163
                RGG + + +    +     + ++   G   R  + 
Sbjct: 224 VRYTDRGG-IRVELGSRDNPAEALVLTVSDTGRGIRAEDL 262


>gi|218437672|ref|YP_002376001.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170400|gb|ACK69133.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1021

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 23/143 (16%)

Query: 18  LCSRICHDI---ISPIGAIHNSLELLDE--VGIED---EVMQLIRLSSMSAIIRL-KFMR 68
           L S I HD+   + PI  I +   LL +    +++   E + L+  SS      + + + 
Sbjct: 656 LASGIAHDLNNILQPILFIAH---LLRQKFPHLDEQTRERLALLEDSSKRGTSLVRQILS 712

Query: 69  LAFGYTGS---VDSLIGLGDIEQVIEDFIAVD-----KRVQVS-WTGEKIDLSRERAKIL 119
            A G  GS   V     L ++ QV +           KR  +  WT         +    
Sbjct: 713 FACGEEGSRVNVQVKHILREVIQVAQKTFPKSIKIQMKRPTLDLWTVYADATQLHQV--F 770

Query: 120 LNLFMVAHASLPRGGKVTISVQD 142
           +NL + A  ++P GG +TIS+++
Sbjct: 771 MNLMVNARDAMPEGGMLTISIEN 793


>gi|156742867|ref|YP_001432996.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156234195|gb|ABU58978.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 576

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 21/175 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMR 68
           ALL   + HD+ +P+ A+   LELL    + +    LI  +  +           L  +R
Sbjct: 351 ALLAQMVIHDLKNPLTALIGFLELLSAADLSESQRSLIDSALRNGRDLAGLVDDLLDLIR 410

Query: 69  LAFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILL 120
              G        + L     +    +  ++  + +  +      + L R  A    +ILL
Sbjct: 411 YNEGRLRLRLGDVSLPVLCAECADELAGWLLYESKTLILDVSPTLPLIRADARILKRILL 470

Query: 121 NLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           NL   A    PRG  +T+ V      D   + +  +   G     PE+  ++ + 
Sbjct: 471 NLLSNAIKHTPRGTLITLRVWREPHPDRGEQTVIEVADTGPGI-PPERIERLFEP 524


>gi|15605839|ref|NP_213216.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
 gi|2982998|gb|AAC06610.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
          Length = 310

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 81/212 (38%), Gaps = 25/212 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---------RLSSMSAIIRLKFMRLAFG 72
           + H++ +P+  + N+LE L ++  E    +LI          +S    +  L F +    
Sbjct: 104 LSHELKTPLAVVMNTLETLLDMEEESVKRELIGRALKRVKEAISLTETVYMLSFSK---- 159

Query: 73  YTGSVDSLIGLGDIE-QVIEDFIA--VDKRVQVSWTGEKIDL--SRERAKILL-NLFMVA 126
             G V   + L ++  +V++D      +K + V    ++  L  +RE  K+++ NL   A
Sbjct: 160 GKGKVREEVNLEEVLSEVLKDLEENIKEKEISVEIDLKEKCLKGNREEIKVIIRNLLQNA 219

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQF 183
                RGGKV +  +  +N  + S++  G      + P      V G     +    +  
Sbjct: 220 VEYNKRGGKVLVETRKDENAIVLSVEDTGIGIENRKIPLILEPFVKGEESKGL---GLGL 276

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             V  +A     ++  +        +     +
Sbjct: 277 ALVKKIAQNYGAKINIQSERGKGTKVEIRFPE 308


>gi|325262999|ref|ZP_08129735.1| sensor histidine kinase KdpD [Clostridium sp. D5]
 gi|324032093|gb|EGB93372.1| sensor histidine kinase KdpD [Clostridium sp. D5]
          Length = 892

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 37/214 (17%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIE------------D 47
            + I   L    L A L   I HD+ +P+ +I  + E  L++E  +E            D
Sbjct: 654 QQEIDMKLQKEQLRANLLRSISHDLRTPLTSISGNAETLLINEGKVEKEQRKKIYKDIYD 713

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           + M LI L        L   R+  G    ++   I    IE+ +       K  ++    
Sbjct: 714 DSMWLINL----VENLLSVTRIENGTMELNLQGEIVEDVIEEALHHVNRRGKEQKIHVEC 769

Query: 107 EKIDLSRERAKILLN-LFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +++ +++   K++L  L  +   ++   P G  + I  +   +  + S+  NG      +
Sbjct: 770 DELLMAKMDVKLMLQVLINLTDNAVKYTPAGSDIRIKAEKQGDRAVISVTDNGLGIPAEQ 829

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIR 196
           K              S   Q +Y    A  +  R
Sbjct: 830 K--------------SRLFQMFYTAGHAVSDGRR 849


>gi|295694964|ref|YP_003588202.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
 gi|295410566|gb|ADG05058.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
          Length = 752

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++L+NL   A  ++PRGG++ +  +   +  I    I+  +    +   ++  G    T 
Sbjct: 623 QVLVNLLKNAIEAMPRGGQIVVQARQEDDRTILIRVIDEGMGIPEDSLPRL--GEPFFTT 680

Query: 177 DSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLSALLE 214
               +     +   +   +  ++  E        +  LL 
Sbjct: 681 KEKGVGLGLTMSYQIIESHGGQMHFESEVGAGTTVEILLP 720


>gi|239944802|ref|ZP_04696739.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991267|ref|ZP_04711931.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448266|ref|ZP_06587656.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
 gi|291351213|gb|EFE78117.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
          Length = 560

 Score = 40.3 bits (93), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 106 GEKIDLSRERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +++   R    ++ NL   A  +     GG++ + ++      I  ++ +G      + 
Sbjct: 420 PDRVVDPRGLVTVVGNLVDNATDAAAGSDGGRIEVGLRTEGRTVILEVRDSGPGVPQEQH 479

Query: 164 FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   +G     + +H    +    V  LA      +     D    V + +L +
Sbjct: 480 ASIFTEGWSTKDVPAHGKRGLGLALVRRLAERQGGSVTVSGADGGGAVFTVVLPE 534


>gi|163857757|ref|YP_001632055.1| two-component hybrid sensor and regulator [Bordetella petrii DSM
           12804]
 gi|163261485|emb|CAP43787.1| two-component hybrid sensor and regulator [Bordetella petrii]
          Length = 533

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 56/175 (32%), Gaps = 17/175 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFG 72
           LL   + HD  + +  I  S ELL + G+ D      +  I  +S  A       R    
Sbjct: 170 LLTGGVAHDFNNLLMVIRGSAELLRQPGLSDSKRQQYIDAISSTSDRAA---HLTRQLLA 226

Query: 73  YTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKID----LSRERAK-ILLNL 122
           Y           D+   IE             +++++          + R + +  +LN+
Sbjct: 227 YARKQPLRPATFDVRSCIEGMQDLFHATTGSSIEIAYDLAPTPCYVHVDRNQLETCILNI 286

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            + A  ++P GG +TI+V               +             G     ID
Sbjct: 287 IINARDAMPAGGTLTITVSAVDTVPATRHHGPAHRPHVAITIADTGLGIAPEVID 341


>gi|253699164|ref|YP_003020353.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
 gi|251774014|gb|ACT16595.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
          Length = 689

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 66/178 (37%), Gaps = 14/178 (7%)

Query: 22  ICHD----IISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-S 76
           I HD    +   IG +  +L  + E       +  +  ++  A    + + LAF     S
Sbjct: 464 IAHDFNNLLTGMIGYVSLALMTMKEEDPAANYLDRVVSAADRAADLTQRL-LAFSRKQIS 522

Query: 77  VDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS----RERA-KILLNLFMVAHAS 129
               + L  I   +   ++     ++++     +  L       +  ++++NL   A  +
Sbjct: 523 HPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPREGMLPVVADSSQVDQVVMNLVTNARDA 582

Query: 130 LPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           +P GG +TI+ +  +    +      G++  +           ++    +H ++ ++ 
Sbjct: 583 MPAGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDTGTGMDEATRAHVLEPFFT 640


>gi|91775008|ref|YP_544764.1| histidine kinase [Methylobacillus flagellatus KT]
 gi|91708995|gb|ABE48923.1| histidine kinase [Methylobacillus flagellatus KT]
          Length = 442

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 7/151 (4%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            LL + I HD+ +P+  +  S+E+L +         +I+       I  +F+    G  G
Sbjct: 217 TLLLAGISHDLRTPLARLRLSVEMLPDEYCASLKAGMIQDIGDMDSIIHQFLDFVRGIEG 276

Query: 76  SVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132
               ++ L  +   V +      +++ +S     +   R  A  ++L NL      +   
Sbjct: 277 EPTQMMDLNALLTSVADRHTRAGRKLTMSLAPTHLIPLRPLAMQRLLTNLI---DNAFAY 333

Query: 133 -GGKVTISVQDSKNENIFSLKINGNLARFPE 162
            GG+VT++ + +    I S+  NG      +
Sbjct: 334 GGGEVTVTTRITAGNIILSVLDNGPGIPAAQ 364


>gi|320353834|ref|YP_004195173.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320122336|gb|ADW17882.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 704

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 18/152 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK---- 65
            L +L  L + I H+I +P+ +I+ +++LL +     D  + LI  +      R++    
Sbjct: 470 RLTSLGQLSAGIAHEIRNPLASIYFNVQLLAKKLPAADPTLALINDTQKGIN-RIRALVK 528

Query: 66  ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERA 116
               F + +     S      L +   +++  +    R++V+   EK          +  
Sbjct: 529 GMLDFAKPSLPSLKSGSLERVLRESIGLMDSQLKKQ-RIEVALQVEKDLPPVVFDAHQIQ 587

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           ++++NL + A  ++P GG+V +  +D +  + 
Sbjct: 588 QVVVNLLLNAMEAMPGGGRVDLVARDERGTDR 619


>gi|213022037|ref|ZP_03336484.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 150

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 46  QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 105

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 106 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 143


>gi|154245239|ref|YP_001416197.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159324|gb|ABS66540.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 690

 Score = 39.9 bits (92), Expect = 0.21,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 70/181 (38%), Gaps = 23/181 (12%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS---- 59
           S  L A+  + + + H+I +P+  I  +L++  +              LI          
Sbjct: 453 SEKLAAIGEITAGVAHEINNPVAVIQGNLDVARDVLGPAAAPVRTEFNLIDQQVHRITII 512

Query: 60  AIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
               L+F R A  + G ++ +     +GD   +++  +   +   V        +   R 
Sbjct: 513 VSKLLQFARPA-EFAGHLEPVAPSEVIGDALVLVQYLLGRGEIAVVRDESATRLVLMNRV 571

Query: 117 ---KILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              ++L+NL + A  ++P+GG +T+    +  + +     ++   G     PE   ++ D
Sbjct: 572 ELQQVLINLMVNAAHAMPQGGTLTLRTRDTAHNGRAGVSIAVADTGPGI-APEHVARVFD 630

Query: 170 G 170
            
Sbjct: 631 P 631


>gi|86157876|ref|YP_464661.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774387|gb|ABC81224.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 471

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 67/211 (31%), Gaps = 14/211 (6%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMR 68
            L+ S+I H++ +P+GAI   +++      + +    ++++          L     F R
Sbjct: 249 ELMSSQISHELKNPLGAIKALVQISARGASDGDTCERLKVVSSEVERMREILDGYLSFSR 308

Query: 69  LAFGYTG---SVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNLFM 124
                     SV  L    ++  V++   A     +            R   + LLNL  
Sbjct: 309 PLECLQREELSVGELAD--EVLSVLQGRAAAGGVGLHRRGDARIDADPRRLKEALLNLVA 366

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A  +  RG +V + V D       +++  G     P    ++      +      +   
Sbjct: 367 NAVEASRRGDRVEVLVSDRGGAVEVAVRDTGRGM-PPAVVARLGTPFFTTREQGTGLGVL 425

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  ++   L      D     +  L +
Sbjct: 426 LARRAFVQHGGTLEYASAPDAGTTATGTLPR 456


>gi|194292018|ref|YP_002007925.1| sensor signal transduction histidine kinase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193225922|emb|CAQ71869.1| putative sensor signal transduction histidine kinase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 436

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 18/166 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +   ++L++    + ++ Q +R         + + R   G T +   + 
Sbjct: 238 ISHDLQTPITRMRLRVDLMEASPTQQKLYQDLREMEHLVREGVAYARTLQGGTETPARID 297

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139
               ++ +  D++     + +        L+R +A  +IL NL      +L  G +VT++
Sbjct: 298 PDALLDSLAGDYLDAGHTIAIEGQAGAPLLTRPQALRRILTNLI---DNALKFGAEVTLA 354

Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           V   +++    + +       PE   +              +Q YY
Sbjct: 355 VA-RQDDGWLQIAVQDRGPGIPEAELE------------RVMQPYY 387


>gi|46200789|ref|ZP_00056503.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 444

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 10/146 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVDSL 80
           I HD+ SPI  +    ELL E    D++++ +          L F R   G         
Sbjct: 244 ISHDLRSPITRLRLRTELLPEGEGRDKMLRDLDEMETMVASSLDFAR---GEAVDETTET 300

Query: 81  IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVT 137
           I L   +E + ++   +    +  W    +   R  A  + L NL      +   G +  
Sbjct: 301 IDLAATLEAICDNAADMGLAAEFEWERRLVCACRPAAIKRALANLI---ENAARYGRQAK 357

Query: 138 ISVQDSKNENIFSLKINGNLARFPEK 163
           +    +       ++ +G      E 
Sbjct: 358 VRAHATDQAVEVVIEDSGPGIPEAEL 383


>gi|301065968|ref|YP_003787991.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|300438375|gb|ADK18141.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
          Length = 336

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I H + +P+ A +N LE++     E    +L+   +  A +  + + LA          +
Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182

Query: 82  GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122
               + Q  +D                +  DK++ + W      +         + L+N+
Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
              A      GG++ I            +   G     A  P  F +   G   +  ++ 
Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            I       +  EN  RL  E   + 
Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327


>gi|313498519|gb|ADR59885.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida BIRD-1]
          Length = 553

 Score = 39.9 bits (92), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 72/179 (40%), Gaps = 15/179 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLS---SMSAIIRLKFMRLAFG-YT 74
           I HD  + + +I  +LEL  +  ++    +  QL+ +S   +  A   ++ + LAF    
Sbjct: 181 IAHDFNNLLASILGALELAGQRLVQQQLTDTAQLLEISRHNAQRAAALVQRL-LAFSRQQ 239

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK----ILLNLFMVAH 127
             V   + +  +   + D I+      V +  +        R  A+     LLNL + A 
Sbjct: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRIDAQQLENALLNLCINAR 299

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ++P GG ++I   + + +   + +++    RF     +     +   +    ++ ++ 
Sbjct: 300 DAMPLGGTLSIGCANVEVQGAEARQLDLTAGRFLRIRVEDTGMGMSKAVMQRALEPFFT 358


>gi|294054893|ref|YP_003548551.1| PAS/PAC sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614226|gb|ADE54381.1| PAS/PAC sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 633

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---LKFMRLAFGYT 74
           L + + H++ +P+G I   +E L +   E   +  +      A  +   + F  L +   
Sbjct: 396 LAAGVAHEVKNPLGVIQLGVEYLQKQIQEPPELLELMEDMKVATDKANEVIFELLDYSAP 455

Query: 75  GSVD-SLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKI---LLNLFMV 125
             +    + + ++   +   +  +      RV+   T E + +S + +K+   L+NLF+ 
Sbjct: 456 HEITMQPVNMNELLHRVLGLMRHNFNKAQIRVRDHSTDEPLFVSMDSSKMEQVLINLFLN 515

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           A + +P GG++TI     + ++  S   +    RF
Sbjct: 516 AISVMPDGGELTIRSSTQRMQSAGSNVSSELTERF 550


>gi|118593272|ref|ZP_01550657.1| sensor histidine kinase [Stappia aggregata IAM 12614]
 gi|118434163|gb|EAV40819.1| sensor histidine kinase [Stappia aggregata IAM 12614]
          Length = 482

 Score = 39.9 bits (92), Expect = 0.23,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 15/202 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI ++    E +++    D++++ +   +      L+F R             
Sbjct: 282 ISHDLRTPITSLRLRAEFIEDEENRDKMIETLEEMAAMTEAALRFTRD--DAQTENAENA 339

Query: 82  GLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
            LG I E +  D   +  +  V   G  +   R  A  + L NL       +  G +V++
Sbjct: 340 DLGAILEALAGDQQDLGHQCSVETEGRIVLPCRPMALKRALRNLI---ENGIRYGDRVSV 396

Query: 139 SVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
               S  E +  +   G            E F ++ +   + T     +       + H 
Sbjct: 397 HAARSAGEALIRITDEGPGIPEERLKDVFEPFVRLEESRNDET-GGIGLGLAITRSIIHA 455

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +  R+  +   +  +     L 
Sbjct: 456 HGGRIDLKNRPEGGLEADIRLP 477


>gi|316934712|ref|YP_004109694.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315602426|gb|ADU44961.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 707

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 15/122 (12%)

Query: 48  EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
               +I  +           L F R            + LGD      D +    R  + 
Sbjct: 376 RSFDMIDSAVAKGTALTRQLLSFSR----RHNVAAQAVDLGDAVNKFADVLRQSVRSDIG 431

Query: 104 WTGEKIDLS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              E  D          E    LLNL + A  ++P GG++TIS+     +N    +++G+
Sbjct: 432 IVIEPPDQPVVVTIDPNEFEIALLNLALNARDAMPDGGRITISIHTETLKNFGPRRLSGS 491

Query: 157 LA 158
            A
Sbjct: 492 YA 493


>gi|39997587|ref|NP_953538.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984479|gb|AAR35865.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 830

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSAII 62
            L +L  L + I H++ +P+  +   L+ L +          +  + +Q I         
Sbjct: 615 RLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKALQEIERVERLVAG 674

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERA 116
            L F       +    + +   D+ +VI+D + + +R      V + +    + + R   
Sbjct: 675 LLNF-------SSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPVFRIDV 727

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169
               + LLNL   A  ++P GG V ++     +  + ++   G        P  F     
Sbjct: 728 EKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPLIFEPFFT 787

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T     I       +  E+  R+  E         +  L 
Sbjct: 788 RKGAGTGLGLSI----TQRIVEEHHGRISVESSAGAGTTFTITLP 828


>gi|322436618|ref|YP_004218830.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164345|gb|ADW70050.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 386

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 82/227 (36%), Gaps = 29/227 (12%)

Query: 11  SMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSA 60
           S  L A   L S I H+I +P+ A+ N + L+      ++         ++L+R+ +   
Sbjct: 156 SEKLAAVGQLASSIAHEINNPLEAVLNLVYLVRGADTLEDARHYANLAEIELVRV-ADIT 214

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTG----EKIDLSR 113
           +  L+F R       +  + + L D    I    A     +R++V        E   L  
Sbjct: 215 MQTLRFHR-----QQTAAAPVNLEDTITAILRLYASRFPARRIKVEQYLRASHEPYLLEG 269

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVD 169
           +  ++L NL   A+ ++P GG +TI +  +     +     + I      F       + 
Sbjct: 270 DIRQVLNNLIRNAYDAMPHGGTLTIRLHSATCLKTSIPGVRITIADTGTGFLPAMRGHLF 329

Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    +  +    +  +++ R+     +    V +  L 
Sbjct: 330 EPFHTTKEVTGTGLGLWITKGIVDKHEGRIYMRSREGQGTVFTIWLP 376


>gi|197120179|ref|YP_002140606.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197089539|gb|ACH40810.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 468

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 42/227 (18%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQL------IRLSSMSAII------ 62
           L + I H+I +P+  I  +++ L         ++   L      I+     A        
Sbjct: 250 LAAGIAHEIRNPLNYISLAIDHLKSEFLPSCPEKAQDLESIANNIKEEVRKANYMVLNFM 309

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---- 112
                 +L+  R+ +        L+      Q+++D +  ++ ++V     +        
Sbjct: 310 NYGRPLKLRLQRVCY------PELVDK--AMQLMKDRL-DERGIEVVREIPEDLPPMLAD 360

Query: 113 ----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQI 167
               R     L N    +  ++P GGK TI    +     F L  +       P+   ++
Sbjct: 361 PELMRN---CLCNFISNSTQAMPEGGKFTIGASLAPETGQFCLTFSDEGTGIEPQDLEKV 417

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +       +  E+   +            S  L 
Sbjct: 418 FQPYFTTKEAGIGLGLAITERIVREHGGSIAVRSTKGEGTTFSVTLP 464


>gi|298506526|gb|ADI85249.1| sensor histidine kinase, Cache and HAMP domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 830

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 34/225 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSAII 62
            L +L  L + I H++ +P+  +   L+ L +          +  + +Q I         
Sbjct: 615 RLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKALQEIERVERLVAG 674

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERA 116
            L F       +    + +   D+ +VI+D + + +R      V + +    + + R   
Sbjct: 675 LLNF-------SSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPVFRIDV 727

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169
               + LLNL   A  ++P GG V ++     +  + ++   G        P  F     
Sbjct: 728 EKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPLIFEPFFT 787

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T     I       +  E+  R+  E         +  L 
Sbjct: 788 RKGAGTGLGLSI----TQRIVEEHHGRISVESSAGAGTTFTITLP 828


>gi|218710598|ref|YP_002418219.1| putative sensor histidine kinase [Vibrio splendidus LGP32]
 gi|218323617|emb|CAV19885.1| putative sensor histidine kinase [Vibrio splendidus LGP32]
          Length = 477

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 70/200 (35%), Gaps = 16/200 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HDI +P+  +    E++D+   +    +L+    M     L++MR        +   +
Sbjct: 282 ISHDIKTPLACLKLRTEMMDDEQTKLRFEKLLNEVDMMLNGALQYMR-----ENDIHEEL 336

Query: 82  GLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGK 135
              DI  ++E   AV  +    V +          +  A  + L NL       +  G  
Sbjct: 337 EWIDINDILEQCAAVHNKNGVCVSLIDLPRIELYGKPLAIKRCLFNLV---DNGVKYGNT 393

Query: 136 VTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193
           V IS+    +     L+  G   +    EK  +    + ++ I+   +       +A  +
Sbjct: 394 VDISMFSHSDSIQIVLRDAGKGIKEDMLEKVFEPYFRDNDTGIEGSGLGLAIARSIARAH 453

Query: 194 KIRLLPEIIDDHNVVLSALL 213
              +      +  + +  +L
Sbjct: 454 GGDVQLSNSPEGGLEVDIIL 473


>gi|254414754|ref|ZP_05028519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178602|gb|EDX73601.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 367

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 78/221 (35%), Gaps = 27/221 (12%)

Query: 20  SRICHDIISPI-GAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLK----FMR 68
           S + HD+ +P+ GAI   ++L            +++V++++  S  +++  ++      R
Sbjct: 142 STLTHDLKTPLLGAIET-IKLFQGGQFGTITPPQEKVLRMMDRSHHASLQLIQTLLDVYR 200

Query: 69  L-AFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSR---------ERA 116
             A G       +  +   E+VI  F  +A  +RV +     + D  R         +  
Sbjct: 201 NDAEGLKLQRQPVNLVALAEEVIATFTDLAASRRVHILLNQSESDFRRSLWVNGDALQLQ 260

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVE 173
           ++  NL + A    PRGGKV + V       I  +   G        P  F +   G+  
Sbjct: 261 RVFANLLVNAINHSPRGGKVEVRVASPGEYQIVRMLDRGQGITEEELPHLFERFYQGHTN 320

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  Y    +   +   +  E       +    L 
Sbjct: 321 RQATGSGLGLYLTRQIIEAHGGTIWAENRKPKGALFGFKLP 361


>gi|78355552|ref|YP_387001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217957|gb|ABB37306.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 498

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 19/212 (8%)

Query: 18  LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L + I H+I +P+ AI    N+L  L    ++D   +  R+    +      +R    + 
Sbjct: 279 LATYIAHEIRNPLFAIGGFANAL--LRSPSLDDNAREKARIILEESRRLDTILRSTMNFA 336

Query: 75  GSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA------KILLNLF 123
              D   G  D+  ++ D +       +KR   +       L   R       + L+NL 
Sbjct: 337 KPSDPRRGDVDMNHIVRDTMWLMRLNDEKRSITTGVDLTEPLPLARGDADMTKQCLINLV 396

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVESTIDSHDIQ 182
             A  ++PRGG +T+  +    +    +++       PE+  + +      +      + 
Sbjct: 397 KNAQEAMPRGGSLTV--RTGMKQRGIFIQVEDTGTGIPEEIRENVFSPFFSTKDKGAGLG 454

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 L  E    +  +  +     ++  L+
Sbjct: 455 LAMTKKLIEEMGGAVELQTAEGKGTSVTLFLQ 486


>gi|13472175|ref|NP_103742.1| sensor/response regulator hybrid protein [Mesorhizobium loti
           MAFF303099]
 gi|14022920|dbj|BAB49528.1| probable sensor/response regulator hybrid protein [Mesorhizobium
           loti MAFF303099]
          Length = 690

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 22/180 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMS----AIIRLKFMRLAFGY 73
           + HD  + + AI + L LL+     D+    V+ L R S+          L F R     
Sbjct: 323 LAHDFNNLLAAILSGLGLLERHATLDDQARQVVDLTRRSAKQGAELVSRMLAFSR----R 378

Query: 74  TGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGEKID-LSRERA----KILLNLFMVA 126
                + + L  +   +   +A  +   ++  W  +    L+          L+NL   A
Sbjct: 379 QNLKPAAVHLATLGDTMNGLVAPVLGGLIRFEWKIDNSVWLAHVDVGQLELALMNLVFNA 438

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++P GG +T+  Q+   E        G+         +     +   I +  ++ ++ 
Sbjct: 439 RDAMPSGGTITVHAQNRVIEIASEDLPPGDYVVV---TVKDTGAGIPQDILAKVVEPFFT 495


>gi|309810842|ref|ZP_07704643.1| putative histidine kinase KdpD [Dermacoccus sp. Ellin185]
 gi|308435148|gb|EFP58979.1| putative histidine kinase KdpD [Dermacoccus sp. Ellin185]
          Length = 879

 Score = 39.9 bits (92), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 69/215 (32%), Gaps = 18/215 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSL------ELLDEVGIEDEVMQLIRLSSMSAIIR----LK 65
           ALL + + HD+ +P+  I  ++      E+      + E+++ +  S+          L 
Sbjct: 617 ALLSA-VSHDLRTPLAGIKAAVGSLRSDEVTFSPEDQAELLEAVETSADRLDALIGNLLD 675

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             RL  G   +    I L ++       +    RV          +  +   +   L  V
Sbjct: 676 ASRLQTGALVANPREIDLAEVVTPAVRALETPDRVTWHLDDAARHVVADPGLLDRVLANV 735

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSH 179
              +L  GG   + V  S       L++  +    P++  + +       G+  +  D  
Sbjct: 736 LENALRHGGSDGVVVTTSALGPRVELRVADHGPGIPDEAREEIFRPFQRYGDAPAG-DGI 794

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L       L  E      V +  +L 
Sbjct: 795 GLGLAVARGLTEAMGGMLEAETTPGGGVTMVIVLP 829


>gi|294675548|ref|YP_003576164.1| sensor histidine kinase [Prevotella ruminicola 23]
 gi|294473924|gb|ADE83313.1| sensor histidine kinase [Prevotella ruminicola 23]
          Length = 371

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 17/150 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--FGYTGSVDSLI 81
           H + +PI ++   +E+L E   +D+   LI       + RL+  R+A  F   GS+    
Sbjct: 174 HQLGTPISSLMAWVEILKENHPDDD---LIPE-MDKDVKRLE--RIAERFSKIGSLPEPT 227

Query: 82  --GLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAKILL-----NLFMVAHASLPR 132
              + ++   + D++      +V+++      D+       L      NL   A  ++  
Sbjct: 228 PGSMNEVIAHVVDYMRRRTSNKVEITTQIPDHDVVVNMNASLFEWVIENLCKNAVDAMEG 287

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPE 162
            GK++I + D  +     +   G   R  +
Sbjct: 288 AGKISIQLIDDDHRVAIEITDTGKGIRKKD 317


>gi|227535577|ref|ZP_03965626.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227186707|gb|EEI66774.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 336

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I H + +P+ A +N LE++     E    +L+   +  A +  + + LA          +
Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182

Query: 82  GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122
               + Q  +D                +  DK++ + W      +         + L+N+
Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
              A      GG++ I            +   G     A  P  F +   G   +  ++ 
Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGLPIAEADMPHLFERFFRGQYATA-NNV 301

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            I       +  EN  RL  E   + 
Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327


>gi|153005834|ref|YP_001380159.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152029407|gb|ABS27175.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 233

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 61/206 (29%), Gaps = 10/206 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-LDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L +++ H++ +P+ A+   L+L L         E + L+       +  L+     +   
Sbjct: 23  LGAKVAHELKNPLTAVKALLQLGLRNPAEAASHERLALVEREVARMLEILQRYLACYRPL 82

Query: 75  GSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
             ++        +    +  +         R+            R   + L NL      
Sbjct: 83  EELEPTPVALGPLAADTLLALSARAADAGVRLSTRGDATAEADPRRLREALQNLVSNGIE 142

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           + PRGG+V + V    +     ++  G     P+   ++      +  D   +       
Sbjct: 143 ATPRGGEVVVEVLARADGAEIVVRDTGRGM-APDTLRRLGTPFFSTREDGTGLGVVLARA 201

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
               +   L  E          A L 
Sbjct: 202 AIARHGGTLRYESAPGKGTTARATLP 227


>gi|115378951|ref|ZP_01466084.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818264|ref|YP_003950622.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364027|gb|EAU63129.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391336|gb|ADO68795.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 639

 Score = 39.9 bits (92), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 23/216 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           L + + H+I +P+ A+    E L            E + ++ IR SS      L+F R  
Sbjct: 424 LAASVVHEINNPMTAVATYAEALLMNARLRPNSTAEQDKLKKIRESSDRI---LRFTRDL 480

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKIDLSRERAKILL 120
           +++          + L  I +    +        +V V            +     ++ +
Sbjct: 481 VSYARPAKEKPEQVPLESILEQAVSYCEHVVSHAKVNVERDYAPLPPVSAVRANLVQVFV 540

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL   A  ++  GGKV +S +    + +  ++  G     P+    I D    +  +   
Sbjct: 541 NLITNACHAMVSGGKVMLSTRRDGQDAVVLVRDTGTGI-DPKHLGHIFDPFFTTKEEGKG 599

Query: 181 IQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
                 I+  +   +  R+  +       V +  L 
Sbjct: 600 TGLGLSIVQGIVESHGGRITVDSTLGEGTVFTLRLP 635


>gi|78224348|ref|YP_386095.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195603|gb|ABB33370.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 484

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 68/229 (29%), Gaps = 46/229 (20%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQLIRLSSMSAIIRLKFMR 68
           L S I H+I +P+  I  +++ L                 V   I+     A   +    
Sbjct: 253 LASGIAHEIRNPLNYISLAIDHLKSEFTAACPDKTERVVPVADKIKEEVRRANYMVVNF- 311

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAK------I 118
           + FG       + I   ++ +     +     ++RV V  T    DL   R         
Sbjct: 312 MNFGRPLKLRITEISYRELIEKALPLLEEKLAEQRVTVR-TAIPTDLPAMRVDGEMLRNC 370

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           L N    A  ++P GG VT+     + +N F L  +               G  E  + +
Sbjct: 371 LFNFVTNAAQAMPDGGTVTLGATFDREQNRFLLTFSDEGC-----------GIREEDL-A 418

Query: 179 HDIQFYYVILLA-------------HENKIRLLPEIIDDHNVVLSALLE 214
              Q +Y    A              E+   +            + LL 
Sbjct: 419 KVFQPWYTTREAGIGLGLAITERIVREHGGEIRVASSAGKGTTFTVLLP 467


>gi|269104853|ref|ZP_06157549.1| signal transduction histidine kinase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161493|gb|EEZ39990.1| signal transduction histidine kinase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 481

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 41/218 (18%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +    EL+D+    +      + ++++   +      L+ +R   
Sbjct: 280 LFSSISHDLKTPITRLRLRAELIDDESKIEKFNRDLDELEMMVKGA------LQCVR--- 330

Query: 72  GYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KIL 119
                      L +          +  + E   +  ++V++        +++  A  +  
Sbjct: 331 --------DTDLHENLVTVDVLDILHHIAEGHNSQQRKVRILEKPIAPLMAKPLALKRCF 382

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTID 177
            NL       +  G +VT+ + D  +  +  +K  G      ++   + +    +    D
Sbjct: 383 TNLI---DNGVKYGERVTVLISDESDALVLIIKDQGKGIPLEQQ-DAVFEPYYRLAKDKD 438

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            H +       +   +   L     +D  + +   L +
Sbjct: 439 GHGLGMGIARNIVRAHGGDLTIHNANDGGLEVKVFLPR 476


>gi|220918232|ref|YP_002493536.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956086|gb|ACL66470.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 512

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 61/155 (39%), Gaps = 17/155 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAI----IRLKFMRLAFGYTGSVD 78
           H++ +P+GAI  +L+++D  G  +   + ++R  S          L   R+  G     +
Sbjct: 161 HELRNPLGAIVLALDVIDRRGAAEPRQLDVVRRQSRQLSRLVDDLLDVSRVTSGKIALHN 220

Query: 79  SLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
             + L        +  Q       V  R +V     ++ L  +  ++   +  +   +L 
Sbjct: 221 RPVDLAGLVIRAVEAMQPSAAAAGVSLRAEV--APGEVPLVGDPVRLEQVVANLVGNALK 278

Query: 132 R---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               GG V ++++ S +E +  ++ +G      + 
Sbjct: 279 YNRPGGHVVVALEASGDEAVLRVRDDGIGLAEHDL 313


>gi|300788745|ref|YP_003769036.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|15011030|gb|AAK77358.1|AF331073_2 histidine kinase [Amycolatopsis mediterranei U32]
 gi|7340668|emb|CAB83037.1| putative histidine kinase [Amycolatopsis mediterranei]
 gi|299798259|gb|ADJ48634.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 472

 Score = 39.9 bits (92), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 16/203 (7%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTGSV 77
           HD+ +P+ ++  +++ LD  E         ++   +          L+  R   G     
Sbjct: 270 HDLRTPLASMIATVDTLDHAEPATRTRAAAILGTQARRLAKLVEDLLEIARFDAGKADLR 329

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK-V 136
            + + L D+     +   V+  V  S     +   R    ++ NL      + P G   V
Sbjct: 330 VAPVDLADLVADAAEVTGVEAAVTASGDVTVVADPRRVHTVVANLL---SNAAPHGAMPV 386

Query: 137 TISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHE 192
           T+++  + ++ +  +   G        P  F +   G+          +           
Sbjct: 387 TVTLDGTGDDVVVRVADAGPGVPEDLLPVLFDRFTRGDHARQATEGSGLGLAIARENVLA 446

Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215
           +   L     +D   V +  L +
Sbjct: 447 HGGSLAVH--NDGGAVFTVRLPR 467


>gi|327381909|gb|AEA53385.1| Sensor protein [Lactobacillus casei LC2W]
 gi|327385070|gb|AEA56544.1| Sensor protein [Lactobacillus casei BD-II]
          Length = 336

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I H + +P+ A +N LE++     E    +L+   +  A +  + + LA          +
Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182

Query: 82  GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122
               + Q  +D                +  DK++ + W      +         + L+N+
Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
              A      GG++ I            +   G     A  P  F +   G   +  ++ 
Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            I       +  EN  RL  E   + 
Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327


>gi|257439008|ref|ZP_05614763.1| two-component sensor histidine kinase [Faecalibacterium prausnitzii
           A2-165]
 gi|257198593|gb|EEU96877.1| two-component sensor histidine kinase [Faecalibacterium prausnitzii
           A2-165]
          Length = 512

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 22/149 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---FGYTGSVDSL 80
           HD+ SP+ A+ + L+ L+      E +  +  +       L+  RL    F         
Sbjct: 303 HDLRSPLFAVSSGLDTLE---AAPEALPALLPALQQRTAFLR--RLTEDLFLAAKLEQKQ 357

Query: 81  IGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLS--RERAKI---LLNLFMVA 126
           + L +    + + IA          +K+  V       +L    ++ ++   L NL   A
Sbjct: 358 VMLNEDRVSLGEVIAAVCDSCREEAEKKGVVLQAPPASELPVWGDQIRLQQILQNLLTNA 417

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING 155
               P GG +T+S +      + S++  G
Sbjct: 418 IHYTPAGGSITVSSRVEAGAALVSVRDTG 446


>gi|196231754|ref|ZP_03130611.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196224226|gb|EDY18739.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 550

 Score = 39.9 bits (92), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 19/161 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            L AL  + S I HD  + + +I    ELL E     + ++ I  +   A   ++ +R  
Sbjct: 174 RLAALGVMASGIAHDFNNTLSSILGYGELLLESPDHTDYLKRILSAGHDARQIVRRLR-E 232

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG---------EKIDLSRERAK 117
           F   G+    +    +  +I+  + +         ++W           E   L+    +
Sbjct: 233 FYKVGNTGEPLAAVHLNPLIDQAVTLTMPRWNNQALTWGAHITVKREFRELPILAGNPVE 292

Query: 118 I---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +     NL   A  +LP GG++ I         +  +  +G
Sbjct: 293 LRELFTNLIFNAVDALPHGGQILIRTAVEGETIVVRVTDDG 333


>gi|254476854|ref|ZP_05090240.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Ruegeria sp. R11]
 gi|214031097|gb|EEB71932.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Ruegeria sp. R11]
          Length = 747

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 69/193 (35%), Gaps = 21/193 (10%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78
           HD  + + AI    +LL    D+   +   +  I  ++  A   +  + LAF        
Sbjct: 383 HDFNNLLTAISGHCDLLLLRHDQGDQDFGDLIQIHENANRAAALVSQL-LAFSRKQTLQP 441

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
            ++ + D    +   +     +++ ++ + + +  S     R+  ++L+NL + A  ++P
Sbjct: 442 EVLDVRDTLSDLTHLLNRLVGEKITLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMP 501

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYYV 186
           +GG++ +  +    +              P  +  +   +    I    +Q     FY  
Sbjct: 502 QGGEIRVETEAVVLDEPLE---RDRAVVPPGDWVTVKVSDEGVGIAPDKLQKVFEPFYTT 558

Query: 187 ILLAHENKIRLLP 199
                   + L  
Sbjct: 559 KRTGEGTGLGLST 571


>gi|196231613|ref|ZP_03130471.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224466|gb|EDY18978.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 605

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLK----FMRLA 70
           L S I HD+ + +  I  S  +L +   +++ +++   I  S+      +K    F R  
Sbjct: 233 LASGIAHDLNNILSPILMSCGILRKEFDDEDTLKMLSIIEGSAERGAGIVKQVLTFARGV 292

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
            G    +     + ++ +V+      +  +Q ++  +   +  +  ++   LLNL + A 
Sbjct: 293 EGERVLLQLKHLVSELAKVMAQTFPRNIDIQTNFPPDLWTVMGDATQLHQVLLNLCVNAR 352

Query: 128 ASLPRGGKVTISVQDSKNENIFS 150
            ++P+GG + +S ++   +  F+
Sbjct: 353 DAMPQGGGIRLSAENVNIDQHFA 375


>gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 396

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 34/221 (15%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S  L A+      HD+ +PI  +    ELLD+  ++ E+ Q +          L FMR  
Sbjct: 186 SATLAAM-----SHDLKTPITRLRLRAELLDDGELKQEISQDLHDMESMVQATLAFMRG- 239

Query: 71  FGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
            G +      + +  + + ++ D   V   V +  + ++    R +A  + L NL     
Sbjct: 240 -GDSAEPIQPLDVTALLESLQADAEEVGAHVSIEGSTDRPYPGRPQALKRCLSNLV---D 295

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-------------RFPEKFTQIVDGNVES 174
            +   G +  I V+D + + +  +   G                R     ++   G    
Sbjct: 296 NACKYGNRAEILVEDDERQLVIRVLDQGPGISEAQLERVFEPFYRIERSRSRDTGGTGLG 355

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  I        A  +   L+   +    +     L +
Sbjct: 356 LTIARAI--------AQIHGGTLVLHNLKRGGLEAMLTLPR 388


>gi|28868812|ref|NP_791431.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28852051|gb|AAO55126.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331017348|gb|EGH97404.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 403

 Score = 39.5 bits (91), Expect = 0.28,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++D+ +Q+   I  S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDDKTLQVAQHILTSGQRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +RV     +      ++L R +  +I   L  +   ++ 
Sbjct: 242 PLSIHDAHGLDKTLEHVVSEIQRVHPSRLIRSNIGALELIRCDHERIAQLLSNLVSNAIT 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185
            G    ++ V      + F L +       PE     +       I         +  Y 
Sbjct: 302 HGASDSSVEVAAGVLGDRFVLSVANQGEPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIAQAHGGTLDVCSTQEGGTVFTFSMP 390


>gi|27804857|gb|AAO22894.1| sensor protein [Myxococcus xanthus]
          Length = 638

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMR--LA 70
           L + + H+I +P+ A+    + L +      G      + +R    S+   L+F R  ++
Sbjct: 422 LAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLRKILESSHRILRFTRDLVS 481

Query: 71  FG-YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKIDLSRERAKILLNL 122
           +          + L  I  +   F        RV +            +     ++ +NL
Sbjct: 482 YARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIELPPLSAVRANLVQVFVNL 541

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A  ++P GG V ++      + +  ++  G     P+   +I +    +  +     
Sbjct: 542 ITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGI-EPKHLQRIFEPFFTTKPEGRGTG 600

Query: 183 FYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
               I   +   +  RL  E            L 
Sbjct: 601 LGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 634


>gi|157372129|ref|YP_001480118.1| sensory histidine kinase CreC [Serratia proteamaculans 568]
 gi|157323893|gb|ABV42990.1| integral membrane sensor signal transduction histidine kinase
           [Serratia proteamaculans 568]
          Length = 472

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 25/157 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM------------RLA- 70
           H++ SP+ AI  + ELL E        + +         R++ +            R A 
Sbjct: 265 HELKSPLAAIRGAAELLQEQPPAATAQRFLTN-IEQQSARIQQLVDKLLVQARLESRPAL 323

Query: 71  ----FGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                     V   +   + +       + V+    ++  G+ + +S    + L NL   
Sbjct: 324 DLVPLAMATLVRQAVAGKEAQAARRSVLLQVEGVEDITLNGDGLLIS----QALTNLLDN 379

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           A    P GG + +  +  ++E  + + ++ + +  P+
Sbjct: 380 ALDFTPVGGTIKV--RGERHEGHYQVTVSDDGSGIPD 414


>gi|88703694|ref|ZP_01101410.1| two-component sensor histidine kinase [Congregibacter litoralis
           KT71]
 gi|88702408|gb|EAQ99511.1| two-component sensor histidine kinase [Congregibacter litoralis
           KT71]
          Length = 492

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRL-----KFMRLAF 71
           L + + HD+ +P+ +I   LE L    ++       IR +   A +RL     +   L+ 
Sbjct: 270 LIANVSHDLRTPVSSIQGFLETLMVKDLDANAQTDYIRTAHKHA-LRLNELISELFELST 328

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS-RERA----KILL 120
             +GSV+       + ++I+D +      A ++ + ++    +  L  R       ++L 
Sbjct: 329 LESGSVEPHWENFPVMELIQDIVLDHEVSARERGITLTTEAPRESLQVRADIAMIHRLLE 388

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID 177
           NL   A    P+GG++TI V +        +  NG+       P  F +    + +ST D
Sbjct: 389 NLIHNALRHTPQGGEITIRVIEDAQRVQVQVSDNGDGIASQDIPRIFERFYQRDTDSTTD 448

Query: 178 S 178
           S
Sbjct: 449 S 449


>gi|108759665|ref|YP_634982.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463545|gb|ABF88730.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 631

 Score = 39.5 bits (91), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMR--LA 70
           L + + H+I +P+ A+    + L +      G      + +R    S+   L+F R  ++
Sbjct: 415 LAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLRKILESSHRILRFTRDLVS 474

Query: 71  FG-YTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT----GEKIDLSRERAKILLNL 122
           +          + L  I  +   F        RV +            +     ++ +NL
Sbjct: 475 YARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIELPPLSAVRANLVQVFVNL 534

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A  ++P GG V ++      + +  ++  G     P+   +I +    +  +     
Sbjct: 535 ITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGI-EPKHLQRIFEPFFTTKPEGRGTG 593

Query: 183 FYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
               I   +   +  RL  E            L 
Sbjct: 594 LGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 627


>gi|295101919|emb|CBK99464.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 584

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 24/150 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL----AFGYTGSVDS 79
           HD+ SP+ A+   LE L   G   E +  +  +      R++F+R      F        
Sbjct: 375 HDLRSPLFAVSGGLETL---GSAPEALPALLPALRQ---RIEFLRRLTEDLFLAAKLEQK 428

Query: 80  LIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKID-LSRERAKI---LLNLFMV 125
            I L +    + +            A  K V++  + +    +  +  ++   + NL   
Sbjct: 429 QILLNEDRAALNEEAAVVCAACRSEADQKGVELHLSADTPLSVWGDSVRLQQIIQNLVTN 488

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155
           A    P GG + +  +        S++  G
Sbjct: 489 AIHYTPAGGSIHVDCRAEGETACVSVQDTG 518


>gi|167768473|ref|ZP_02440526.1| hypothetical protein CLOSS21_03032 [Clostridium sp. SS2/1]
 gi|167709997|gb|EDS20576.1| hypothetical protein CLOSS21_03032 [Clostridium sp. SS2/1]
 gi|291560448|emb|CBL39248.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [butyrate-producing
           bacterium SSC/2]
          Length = 343

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58
           M KN    ++   +L  L+ S I H + +P+  +    + LL +   E+E M  +     
Sbjct: 110 MQKNRHKVDMERQELQMLI-SDISHQVKTPVSNLQMVTDTLLTKPVSEEERMDFL-QGIR 167

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGL-GDIEQVIED--FIAVDKRVQVSWTGE 107
           S   +L F+        RL  G          L   + Q +    + A  K + VS    
Sbjct: 168 SQTDKLDFLFQALVKTSRLETGAIRLEKKDSSLFHTLAQAMSSIVYAAEKKEIAVSVDCP 227

Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
           +  +    S+  ++ L NL   A    P GGK+++SV   +      +  NG        
Sbjct: 228 ENLIISHDSKWTSEALFNLLDNAVKYTPSGGKISVSVVQWEMYVEVKVTDNGKGISESNQ 287

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +              I  Y    +       +            S +L 
Sbjct: 288 AAIFRRFYREEEVHDQQGVGIGLYLAREIVTRQGGYIKVVSELRQGSEFSIMLP 341


>gi|159898658|ref|YP_001544905.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891697|gb|ABX04777.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 943

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 22/194 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR---LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + + +I   L+LL     VG  D + + I     S+  A    + + LAF    
Sbjct: 581 IAHDFNNILTSILGGLDLLQRRINVGRFDTIERYINSAIKSAKRAAALTQRL-LAFSRQQ 639

Query: 76  SVD-SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAK--------ILLNLFM 124
           ++D   I +  + Q ++D +     +++QV+           R +         LLNL +
Sbjct: 640 ALDVQPININSLIQSLDDLLQRSLGEQIQVATNLSDDV---WRVRTDANQLENALLNLAI 696

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A  ++P GG +TIS  +   +    L+++ +     E       G     I+     F+
Sbjct: 697 NARDAMPYGGILTISTSNIDAQQANQLQLDPHEYVLIEVI-DTGTGMSSEVIERAFDPFF 755

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 756 TTKPLGQGTGLGLS 769


>gi|110679929|ref|YP_682936.1| sensor kinase-like protein, putative [Roseobacter denitrificans OCh
           114]
 gi|109456045|gb|ABG32250.1| sensor kinase-like protein, putative [Roseobacter denitrificans OCh
           114]
          Length = 776

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 415 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 470

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + + D    +   +     ++V ++ T + + L      R+  ++L+NL + A  
Sbjct: 471 LRPETLDMRDTLADLTHLLNRLVGEKVTLTLTHDPVLLPIRADKRQLEQVLMNLVVNARD 530

Query: 129 SLPRGGKVTIS 139
           ++P GG++ I 
Sbjct: 531 AMPNGGEIRIE 541


>gi|90424699|ref|YP_533069.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90106713|gb|ABD88750.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 702

 Score = 39.5 bits (91), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 42  EVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
           +   +   + +I  +   A       L F R    +  S   ++ L +      D +   
Sbjct: 369 DDPQDRRALDMIDSAVNKATTLTRQLLSFSRR---HAVSA-KVVDLAESVHRFSDVLRQS 424

Query: 98  KRVQVSWTGEKIDLSRERAKI--------LLNLFMVAHASLPRGGKVTISVQDSKNENI 148
            R  ++   E+        +I        LLNL + A  ++P GG++TIS++   +   
Sbjct: 425 VRSDIAIEIERPAGPLP-VRIDPNEFEIALLNLALNARDAMPDGGRITISIKRRIDGKT 482


>gi|256824368|ref|YP_003148328.1| signal transduction histidine kinase [Kytococcus sedentarius DSM
           20547]
 gi|256687761|gb|ACV05563.1| signal transduction histidine kinase [Kytococcus sedentarius DSM
           20547]
          Length = 389

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 28/206 (13%)

Query: 20  SRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIR 63
           S + H++ +P+        A+ + +   DE   E    QL         I   S +   R
Sbjct: 152 SDLAHELRTPVSVLTVYHEALQDGVSHWDEPTGELMGEQLARLTRLVEDINDVSRAEEGR 211

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERA-KILLN 121
           ++  R   G +G + +           E +      + +       +D+ R+R  ++L N
Sbjct: 212 IELDRSPQGVSGLLHAATEAHK-----EAYATKGVALTMDADPGLAVDVDRQRMGQVLGN 266

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177
           L   A    P GG+VT+  + S +    S+   G        P  F +   G+     D 
Sbjct: 267 LLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDH 326

Query: 178 -SHDIQFYYVILLAHENKIRLLPEII 202
               +       L   +   L     
Sbjct: 327 GGSGVGLAISRALIQAHGGTLSATST 352


>gi|168185721|ref|ZP_02620356.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169296297|gb|EDS78430.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 552

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDG 170
           +I+LNL   A    P+GG + +++ D  +    +++ NG            ++FTQ+ D 
Sbjct: 412 RIMLNLLSNAVKFTPKGGNIKVNIHDDGDRIKITVRDNGIGIPKDKTHIIFDRFTQV-DK 470

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   + +   I  Y V  L   +  R+  +            L 
Sbjct: 471 SFTRSTEGSGIGLYLVKALVEMHNGRISVDTKYGEGSEFIIDLP 514


>gi|311103713|ref|YP_003976566.1| heavy metal sensor kinase family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310758402|gb|ADP13851.1| heavy metal sensor kinase family protein 1 [Achromobacter
           xylosoxidans A8]
          Length = 466

 Score = 39.5 bits (91), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 66/203 (32%), Gaps = 18/203 (8%)

Query: 24  HDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           H++ +P+  + N  +++        +     +  ++ +          L   R   G   
Sbjct: 245 HELRTPLATLINGTQVMLSSPRDAAELRDALESNLEELEDLKTLVNDMLFLARADRGERA 304

Query: 76  SVDSLIGLG-DIEQVIEDFIAV----DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           +  + + L  +  +V E + A+       ++          +    + L NL   A  + 
Sbjct: 305 ADLAPVSLAAEARRVAEYYEAMLEESGVHLRCVGDATVAANAGLVRRALANLISNAIKAT 364

Query: 131 PRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTI--DSHDIQFYY 185
           PRGG++ ++   S       ++  G     A  P  F +        T   + H +    
Sbjct: 365 PRGGEIVLACSASPAGARLEVRNPGAPIPSADLPRIFDRFFRSTHARTPRSEGHGLGLAI 424

Query: 186 VILLAHENKIRLLPEIIDDHNVV 208
           V  +A  +   +         VV
Sbjct: 425 VRAIARMHGGEVDAASGAHGTVV 447


>gi|239631207|ref|ZP_04674238.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239525672|gb|EEQ64673.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 336

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I H + +P+ A +N LE++     E    +L+   +  A +  + + LA          +
Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182

Query: 82  GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122
               + Q  +D                +  DK++ + W      +         + L+N+
Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 242

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
              A      GG++ I            +   G     A  P  F +   G   +  ++ 
Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            I       +  EN  RL  E   + 
Sbjct: 302 GIGLAIAAGITRENDGRLFAENTAEG 327


>gi|161528164|ref|YP_001581990.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160339465|gb|ABX12552.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 417

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 35/169 (20%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSS----M 58
            L ++  L SR+ HDI +P+  I   ++LL        DE  I+   ++LI+ S      
Sbjct: 206 KLASIGELASRVSHDIRNPLTTIKGVVDLLTSQKSTVTDEKDIQ--RLELIKKSVTQINH 263

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAK 117
                L ++R          + I L +   ++E      KRV +  + E     ++   +
Sbjct: 264 QVEDVLDYVR---------TNKISL-EKTSLLEIINLAAKRVSIPDSVEVSYPEKDYTIR 313

Query: 118 --------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                   + +NL + A  ++ R GK+ I ++   N     ++ +G   
Sbjct: 314 CDKLKMEIVFVNLLLNAVDAVRREGKIAIRMKSVDNFIEIQVEDSGPGI 362


>gi|158522818|ref|YP_001530688.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511644|gb|ABW68611.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 595

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 77/220 (35%), Gaps = 17/220 (7%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQL----IRLSSMS 59
           S  L A+  L + + H+I +P+ +I         E   +   + +        +   + +
Sbjct: 376 SRRLAAIGKLAAGVAHEIRNPLSSIK-GFATYFKEKFSDSDQDKKTADTMIYEVERLNRA 434

Query: 60  AIIRLKFMR-LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
               L+F R ++   T      +    +  +  DF              +  +  +R ++
Sbjct: 435 VTQLLEFARPVSLEITEVEPGELIEHSLRLMENDFTNKGIESTARIQTTRPVIRTDRDRL 494

Query: 119 ---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVES 174
              LLNL++ A  ++  GG++T+++ D  N +  ++ +        EK   QI D    +
Sbjct: 495 NQVLLNLYLNAVDAMESGGRLTVTLSDGDNNDTVTIDVTDTGHGIAEKDMEQIFDPYFTT 554

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  L       +  E  + H       + 
Sbjct: 555 RSRGTGLGLAIVYKLVESLGGTITVESREGHGTTFHIRVP 594


>gi|94969808|ref|YP_591856.1| histidine kinase [Candidatus Koribacter versatilis Ellin345]
 gi|94551858|gb|ABF41782.1| histidine kinase [Candidatus Koribacter versatilis Ellin345]
          Length = 321

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 12/82 (14%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++L+NL + A  + P GG VT+S +  K   +  L+++   A  P              I
Sbjct: 206 QVLMNLLLNAAQATPPGGTVTVSAEKVKFNELIELRVSDTGAGIPP------------DI 253

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
             H  + ++         + L 
Sbjct: 254 LPHVFEPFFTTKRNQGTGLGLS 275


>gi|11498784|ref|NP_070013.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
 gi|2649399|gb|AAB90059.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
          Length = 456

 Score = 39.5 bits (91), Expect = 0.32,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 74/199 (37%), Gaps = 19/199 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           HDI + I AI   LE++ +    +E  +LI L+   +       RL      + +    L
Sbjct: 265 HDIANAITAIRAVLEIVRDS--PEEAEKLIPLAIRRSDY---VFRL---INDARELEKAL 316

Query: 84  GDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHASLPR-GGKV 136
            +++     +++ +     + V+VS   E + +S     + +LN   +   ++   GGK 
Sbjct: 317 EELKPVNVAEMVREVAEQFRNVEVSVEAENVVVSANEGLRAVLN--NILQNAMVHGGGKA 374

Query: 137 TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIR 196
            + V  ++   I  +   G     P++  + +     +T +   +  Y    +       
Sbjct: 375 RVEVLANERNGIVRVIDYGKG--VPDEIKEKIFEEGFTTGEGMGLGLYITKRILEIFGGE 432

Query: 197 LLPEIIDDHNVVLSALLEK 215
           +     +    +    + K
Sbjct: 433 IKVRDNEPSGAIFEIKIPK 451


>gi|298527667|ref|ZP_07015071.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511319|gb|EFI35221.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 853

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 19/171 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS----AII 62
            LVA+  L + + H+I +P+G I   +ELL     EV    E +  I   + +       
Sbjct: 633 KLVAMGQLAAGVAHEINNPLGVILCYVELLKRQFSEVPQGQEDLVTIEKQARNCKRIVSD 692

Query: 63  RLKFMRLAFGYTGSVDSLIG--LGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAK 117
            L+F R   G T    + +   L ++  ++ +            +     ++++   + K
Sbjct: 693 LLEFARS--GETSKHTASLNQTLEEVLGMVGEQFKKQGVQIETDLDPDLPQMEMDTNKIK 750

Query: 118 -ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            + +NL M A  ++  R GK+ IS +    +++  +    N    PE    
Sbjct: 751 QVFMNLLMNARQAMDGRDGKMHISTRYMAQDSLARVIFWDNGEGIPEYMQD 801


>gi|159044193|ref|YP_001532987.1| histidine kinase [Dinoroseobacter shibae DFL 12]
 gi|157911953|gb|ABV93386.1| histidine kinase [Dinoroseobacter shibae DFL 12]
          Length = 779

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 19/132 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   E   +  I  ++  A       L F R       
Sbjct: 406 HDFNNLLTAISGHCDLLLLRHDQGDPEYGDLVQINQNANRAASLVGQLLAFSR----KQT 461

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
               LI L D    +   +     +RV ++   +          R+  ++L+NL + A  
Sbjct: 462 LQPELIDLRDTLSDLTHLLNRLVGERVSLTLMTDPDLSPMRADRRQLEQVLMNLVVNARD 521

Query: 129 SLPRGGKVTISV 140
           ++P GG++TI  
Sbjct: 522 AMPEGGEITIEA 533


>gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
 gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
          Length = 373

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 64/209 (30%), Gaps = 18/209 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSAIIRLK----FMRLAFGYTGSVD 78
           H++ +P+ A+    E L +  +E E   + I+    +    ++      ++  G      
Sbjct: 156 HELRTPLSALQAYAEALADGVMEPEKAAERIQQEVRAMSRLVRDLSLVSQVESGAVELHP 215

Query: 79  SLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSR------ERAKILLNLFMVAHASL 130
             +   ++ +   +    A   +           L R         ++L NL   A    
Sbjct: 216 GPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPRVWADAERTLQVLANLLSNALRHT 275

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDSHDIQFYY 185
           P GG+V +  + +    +FS++  G        P  F +    D +         +    
Sbjct: 276 PEGGRVRLGAERTGQAVVFSVEDTGPGIPEEHLPRIFERFYRIDPSRSRQDGGTGVGLTI 335

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              L      R+  E       V    L 
Sbjct: 336 AKSLVEAMGGRIWVESQLGRGSVFRFTLP 364


>gi|209966017|ref|YP_002298932.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959483|gb|ACJ00120.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 843

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 22/209 (10%)

Query: 24  HDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           HD  + + AI N+LEL   +     E ++    ++ +    ++ + LAF           
Sbjct: 488 HDFNNLLTAIVNNLELARRDPAGAAERLEGALKAARAGTELVRRL-LAF--ARMQPLEPQ 544

Query: 83  LGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR--ERAKI---LLNLFMVAHASLPR 132
             D  +++ D +     AV +RV+VS T  +       +  ++   LLNL + A  ++P 
Sbjct: 545 PTDPGRLLHDILPLLRRAVGERVEVSVTAGRRLPPVLVDPVQLENALLNLAVNARDAMPG 604

Query: 133 GGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           GG++ I       +D   + + ++   G     PE   ++ +    +             
Sbjct: 605 GGRLEIRAGVELAEDGTPQVVLTVADTGTGM-TPEVAQRMFEPFFTTKPPGKGTGLGLAS 663

Query: 188 L--LAHENKIRLLPEIIDDHNVVLSALLE 214
           L     ++  ++  E       V      
Sbjct: 664 LYGFVRQSGGQVRVETAPGRGTVFHLSFP 692


>gi|148545613|ref|YP_001265715.1| sensory histidine kinase CreC [Pseudomonas putida F1]
 gi|148509671|gb|ABQ76531.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 478

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 61/206 (29%), Gaps = 23/206 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75
           H++ SP+ AI  + ELL    +  +       +      RL+          R+      
Sbjct: 265 HELKSPLAAIRGASELLQGEDMPADQRARFAGNIERESERLQQMIERLLNLARVEQMQAL 324

Query: 76  SVDSLIGLGDIE-QVIEDFIAV--DKRVQVSWTGEKIDL----SRERAKILLNLFMVAHA 128
             +  + L  +  +++    A     R+QV                  + L NL   A  
Sbjct: 325 EDEQQVALAALVDELLLAHAARIEGARLQVRQRVPATLRLLCDPFLMRQALANLLDNALD 384

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQ 182
             P GG +   ++        SL   G         R  E+F  +             + 
Sbjct: 385 FTPEGGTLLFDLERDGERVALSLFNQGQAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLN 444

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVV 208
           F  V  +   +   L  + +D    V
Sbjct: 445 F--VAEVMQLHGGALAVDNVDGGVRV 468


>gi|302338341|ref|YP_003803547.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301635526|gb|ADK80953.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 630

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 9/120 (7%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGL----GDIEQVIED 92
           E L         +  I+ ++  A    + + LAF          I L     ++E++++ 
Sbjct: 288 EKLHSGEDVASDIDGIQKAAKKATALTRQL-LAFSRRQVLKPKQIDLNRLVREMEKMLQR 346

Query: 93  FIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
            ++ D  + +  + E+ D+     +  ++L+NL + A  ++P GGKV I+ ++ + E  F
Sbjct: 347 LVSEDITMTLLPSAERSDVYVDPGQIEQVLMNLVVNARDAMPGGGKVFITTKNHEVERAF 406


>gi|307155197|ref|YP_003890581.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306985425|gb|ADN17306.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 675

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 27/161 (16%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIRLSSMSAII----RL 64
           A + S   HD+ +P+ AI N L +  E  I+D         M+L+R             L
Sbjct: 458 AYVAS---HDLKAPLRAIAN-LSVWIEEDIKDQLDEDTRHQMELLRGRVHRMEALINGLL 513

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLN 121
           ++ R+  G       +I +G++   I D +A     ++        L   S    ++L N
Sbjct: 514 QYSRV--GRLKGQTEVINVGELLTEIVDSLAPPSEFRIEIVEPMPTLVTESFPLRQVLTN 571

Query: 122 LFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLA 158
           L      +L       G + ISV++ +    FS+  +G   
Sbjct: 572 LI---SNALKHHHNNEGNIQISVEEKEEFYQFSITDDGPGI 609


>gi|254425720|ref|ZP_05039437.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188143|gb|EDX83108.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1097

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 73/199 (36%), Gaps = 41/199 (20%)

Query: 22   ICHDI---ISPIGAIHNSLEL-LDEVGIE-DEVMQLIRLSSMSAIIRL-KFMRLAFGYTG 75
            I HD+   ++PI  I   L L L +      E + ++  S+      + + +  A G   
Sbjct: 866  IAHDLGNILTPILGIAQLLRLTLTDANASTQEQIDILEKSAQRGTKMVRQILTFAQGSPE 925

Query: 76   S---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------KILLNLFM 124
            S    D    L +I  ++         V++  +  + D   +          ++L+NL +
Sbjct: 926  SKTTADISALLQEIVDIVRQGFPSSIEVRLEMSLLEDDPGHKAVAVDSTHLHQVLMNLCV 985

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
             A  ++P GG +TI +          + +    AR      +++ G             +
Sbjct: 986  NARDAMPNGGVLTIVLDQ--------VSVTEAAARKDP---EVLAG-------------H 1021

Query: 185  YVILLAHENKIRLLPEIID 203
            Y+++   +    +  E+ D
Sbjct: 1022 YMVVTVADTGAGIASEVRD 1040


>gi|86159947|ref|YP_466732.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776458|gb|ABC83295.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1088

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 16/156 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + H++ +P+  I NSL +LD              ++              L   R+A G 
Sbjct: 736 LSHELRNPLAPIRNSLYILDHAEPAGQQARRAKDIVARQVEHLTRLVDDLLDVTRIARGK 795

Query: 74  TGSVDSLIGL-GDIEQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                  + + G   +V ED   +   + V+++       L          ++L NL   
Sbjct: 796 IELRREDLDVVGLARRVAEDHRSLMQGRGVELTIDLLPGALTVNGDPARLTQVLGNLLNN 855

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           A    P GG+VT+SV+   +     ++  G      
Sbjct: 856 AAKFTPPGGRVTLSVRAEGDRAALRVRDTGPGIAPD 891


>gi|17229460|ref|NP_486008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131058|dbj|BAB73667.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 759

 Score = 39.5 bits (91), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 28/145 (19%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEV---MQLIRLSSMSAIIRLK----FMR 68
           L S I HD+ + +  I    +LL       ++     ++++ +++      +K    F R
Sbjct: 396 LASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINAKRGADLVKQVLSFAR 455

Query: 69  LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAK 117
                 G     I L       ++ +++++       V        W          +  
Sbjct: 456 ------GVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSGDSTQLHQV- 508

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142
            L+NL + A  ++P GG +TIS ++
Sbjct: 509 -LMNLCVNARDAMPDGGTLTISAEN 532


>gi|194737287|ref|YP_002117074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197301231|ref|ZP_02664657.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194712789|gb|ACF92010.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287721|gb|EDY27112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322616282|gb|EFY13192.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617275|gb|EFY14177.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625953|gb|EFY22768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626649|gb|EFY23451.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631484|gb|EFY28241.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635197|gb|EFY31915.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642598|gb|EFY39194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646809|gb|EFY43313.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650807|gb|EFY47200.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655893|gb|EFY52194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657292|gb|EFY53571.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665554|gb|EFY61739.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669737|gb|EFY65882.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670984|gb|EFY67116.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322679192|gb|EFY75245.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679350|gb|EFY75397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322688117|gb|EFY84081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195790|gb|EFZ80965.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200695|gb|EFZ85768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202184|gb|EFZ87240.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209295|gb|EFZ94230.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211620|gb|EFZ96457.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218042|gb|EGA02755.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221331|gb|EGA05753.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225742|gb|EGA09963.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230970|gb|EGA15087.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235752|gb|EGA19834.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240066|gb|EGA24112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242601|gb|EGA26623.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249691|gb|EGA33598.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252574|gb|EGA36415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256932|gb|EGA40644.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262045|gb|EGA45609.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323263949|gb|EGA47463.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268438|gb|EGA51908.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 465

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  +DS  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKDSGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|163746438|ref|ZP_02153796.1| sensor histidine kinase, putative [Oceanibulbus indolifex HEL-45]
 gi|161380323|gb|EDQ04734.1| sensor histidine kinase, putative [Oceanibulbus indolifex HEL-45]
          Length = 440

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 16/173 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ S + HD+ +P+  +   L ++DE         L+        +  +F+  A G   
Sbjct: 235 TLMLSGVSHDLRTPLTRMRLGLSMIDEEDAAP----LLADVDDMQRMLDEFLNFAKGAAE 290

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILL-NLFMVAHAS 129
                +      Q I D      R       E     ++ L +   +  + NL      +
Sbjct: 291 GEPEKVDPHKFVQTIVDDAQRGGRNVTLLPPEGSGEGRVKLRKVAMRRAVDNLI---SNA 347

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
           +  G +  +SV  S       ++ NG     P++          S +D    Q
Sbjct: 348 VRYGTQAEVSVMLSDRTLRIRVEDNGPG--IPQERRD-EATRPFSRLDPARNQ 397


>gi|254429234|ref|ZP_05042941.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195403|gb|EDX90362.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 439

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 11/170 (6%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ALL + + HD+ +P+  +  S E + +  +   +++ I          + F+R       
Sbjct: 226 ALLLAGVSHDLRTPLTRLRLSAEFMQDEELAKGIIEDIEDMDAILDQFISFIR---DGAD 282

Query: 76  SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
                  L D I++V   + A   R ++     ++ L R   K +L    +   +L  G 
Sbjct: 283 EQPDFENLNDLIQEVAGKYPAEQLRFELE-DLPRLMLKRLTVKRML--ANLVGNALKYGA 339

Query: 135 K-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHD 180
             V +    ++N+ + +++ +G   R    P        G    T+    
Sbjct: 340 SPVEVRTAVAENKVVLTVRDHGRGVREEDIPLLLQPFSRGEKARTLSGSG 389


>gi|310826639|ref|YP_003958996.1| two-component sensor histidine kinase [Eubacterium limosum KIST612]
 gi|308738373|gb|ADO36033.1| two-component sensor histidine kinase [Eubacterium limosum KIST612]
          Length = 670

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 29/234 (12%)

Query: 7   FNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
             + + +L  L+  R      + HD+ +P+ AI   +EL+    ++ +      +++I  
Sbjct: 438 VAVRTRELTTLMNERKKFLSDLAHDLKAPVTAIQGFIELVKYGDVQVDEEVQRYLEVINQ 497

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            S     +++ ++  F             DI  +++DF   + R      G    + +  
Sbjct: 498 KSNEVQTKVRSLQ-EFTSQDEAVMKKERMDIGGLLDDFYENN-RPDAEANGISFSIIKPG 555

Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---F 160
                        ++  NLF  A +  P  G++ + V   +   +     NG        
Sbjct: 556 KPIEILGNPELIYRVFENLFYNAMSFTPMNGRIVVEVTLEEGWVVIRFSDNGAGIPPDIL 615

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+ F +      E   DS  +  + V      +   +            +  L+
Sbjct: 616 PKIFDRFYTTRGEKN-DSQGLGLFIVRYTIKAHGGTIEVVSEMGEGTTFTIRLK 668


>gi|197122291|ref|YP_002134242.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|220917074|ref|YP_002492378.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172140|gb|ACG73113.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|219954928|gb|ACL65312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 502

 Score = 39.5 bits (91), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 20/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQ-LIRLSSM 58
           + +    A+  + + + H+I +P+  +  +LELL E   +D         MQ  +R  + 
Sbjct: 269 VRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSDDARHSDIVTEMQHQVRRLTH 328

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SR 113
           +    L F R A     S D    L  +  +I    + D  +++                
Sbjct: 329 TMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQ-SRDGTLELVPELSPGLPAVLADPS 387

Query: 114 ERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +  ++ LN+ + A  ++    RGG++T+  +         ++  G      +   QI   
Sbjct: 388 QLEQVFLNICLNACQAMIATRRGGRLTVRSRAGDGTVSVEVEDTGPGI-PADLRAQIFKP 446

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  + + +       +  E+   +      +     +  L++
Sbjct: 447 FFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQQ 491


>gi|191637843|ref|YP_001987009.1| Sensor protein [Lactobacillus casei BL23]
 gi|190712145|emb|CAQ66151.1| Sensor protein [Lactobacillus casei BL23]
          Length = 328

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 32/206 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I H + +P+ A +N LE++     E    +L+   +  A +  + + LA          +
Sbjct: 124 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 174

Query: 82  GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122
               + Q  +D                +  DK++ + W      +         + L+N+
Sbjct: 175 DTHTLSQTRQDVSVAALGKEALKPLLRMVADKQLTIDWQVSPDLMLHVNPALVKEALVNV 234

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
              A      GG++ I            +   G     A  P  F +   G   +  ++ 
Sbjct: 235 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 293

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            I       +  EN  RL  E   + 
Sbjct: 294 GIGLAIAAGITRENDGRLSAENTAEG 319


>gi|186686383|ref|YP_001869579.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468835|gb|ACC84636.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 762

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 28/145 (19%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEV---MQLIRLSSMSAIIRLK----FMR 68
           L S I HD+ + +  I    +LL       ++     ++++ +++      +K    F R
Sbjct: 396 LASGIAHDLNNILTPILAGAQLLPLKFPDADERTHHLLEILEINARRGADLVKQVLSFAR 455

Query: 69  LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAK 117
                 G     I L       ++ +++++      ++        W          +  
Sbjct: 456 ------GVEGKRITLQLRHLIVEVAKILKETFPRSIQISTDVLQDLWMVSGDSTQLHQV- 508

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD 142
            L+NL + A  ++P GG + IS ++
Sbjct: 509 -LMNLCVNARDAMPNGGSLIISAEN 532


>gi|218246751|ref|YP_002372122.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|257059793|ref|YP_003137681.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|218167229|gb|ACK65966.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|256589959|gb|ACV00846.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 357

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 93  FIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           ++   +RV ++ TG+++ +     +  ++ +NL   A    PRG +V I +Q   +E   
Sbjct: 223 YLTQSRRVHINITGDRLWVKGDPWQLKRVFINLLSNAINHSPRGSRVEIILQSKGDEQQI 282

Query: 150 SLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             + NG        P+ F +   G  +       +  Y    +   +  ++  E      
Sbjct: 283 LFRDNGLGISQEELPQLFERFYQGTSDRQAKGSGLGLYLSRQIIEAHGGKIWAENRSPKG 342

Query: 207 VVLSALLE 214
            +    L 
Sbjct: 343 AMFGCRLP 350


>gi|114777281|ref|ZP_01452292.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
 gi|114552426|gb|EAU54909.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
          Length = 697

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIR--LSSMSAIIRLKFMR--LAF-GYTG 75
           I HD  + + AI  S+EL+  E G+  +VM+ +    ++      L   R  LA+ G   
Sbjct: 337 IAHDFNNLLTAIQGSIELVKLEEGLSPDVMESLDTMDTATRTAADL--CRQMLAYSGKGL 394

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMVAHA 128
                  L D+ + +   I V    +VS   E    ++  +       ++LLNL + A  
Sbjct: 395 MKPEQFNLQDLIEELHGLIDVSVGKEVSLEVEFDPAAKPVSADRSQISQVLLNLSLNAAE 454

Query: 129 SLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           S+P G  G + I+V          +   G  A  P  +T +   +  + +D
Sbjct: 455 SMPAGRHGHIRITVSHRHLSEHADVHFVGKAALQPGDYTVLAVEDDGAGMD 505


>gi|75907566|ref|YP_321862.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701291|gb|ABA20967.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 576

 Score = 39.5 bits (91), Expect = 0.35,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 14/161 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRLA 70
           L S I HD+ + +  I  +++LL     E +V   +  +  +       L+    F R  
Sbjct: 219 LASGIAHDLNNILTPILMAVQLLQMKLHEPQVQKVLNTLESNVKRGANLLRQVLSFARGI 278

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
            G    V     + +IEQ+++   +     Q         +S +  ++   L+NL + A 
Sbjct: 279 EGKKTIVPVRKLILEIEQIVQQTFSKSIICQTYIPENLWYVSGDTTQLHQVLMNLVLNAR 338

Query: 128 ASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKF 164
            ++P GG + I+  +     + ++   L I       P K 
Sbjct: 339 DAMPNGGILKITADNVVLSPQGKHYIKLSIEDTGLGIPAKI 379


>gi|323529788|ref|YP_004231940.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323386790|gb|ADX58880.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 509

 Score = 39.1 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 24/135 (17%)

Query: 24  HDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           HD  + +  I N LE+L        +  + + + + I   +      L F R        
Sbjct: 164 HDFNNLLAVISNGLEVLAIQSRTAIDKKMIEGMRRAIDRGASLTQQLLSFAR-------Q 216

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRERAK---ILLNLFMVA 126
                 + ++  +I +F  +  R        +++    +     + A+    LLNL + A
Sbjct: 217 QPLQAQVYELNALIREFAPMLSRAGNRSTHVELALQPGEAFALVDAARFEAALLNLVVNA 276

Query: 127 HASLPRGGKVTISVQ 141
             ++P GG VTI+ +
Sbjct: 277 VDAMPTGGVVTIATE 291


>gi|213161648|ref|ZP_03347358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 393

 Score = 39.1 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 289 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 348

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 349 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 386


>gi|197122071|ref|YP_002134022.1| integral membrane sensor hybrid histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171920|gb|ACG72893.1| integral membrane sensor hybrid histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 633

 Score = 39.1 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + H++ +P+  I ++L LL             +Q+I              L   R+A G 
Sbjct: 271 LSHELRNPLAPIRSALHLLSHPAASPAQGRRALQVIARQVDHLTRIVDDLLDVTRIARGK 330

Query: 74  TGSVDSLIGLGD-IEQVIEDF--IAVDKRVQVSWTGEKIDLSRER-----AKILLNLFMV 125
                  I L + I +  ED+  +  D+R+ +        L  +      A+++ NL   
Sbjct: 331 IELRRERIDLSEVIARTAEDYRDLLDDRRIALEVELSAGPLRADADPTRVAQVVGNLLSN 390

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           A    P GG+VT+     +   +  +   G     PE   +I + 
Sbjct: 391 AAKFTPPGGRVTVRAAAREGRAVIRVIDTGVGM-PPELLGRIFEP 434


>gi|299133405|ref|ZP_07026600.1| PAS/PAC sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298593542|gb|EFI53742.1| PAS/PAC sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 534

 Score = 39.1 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + A+  SLEL+ +   +D  +  +  ++M    R        L F R     
Sbjct: 161 IAHDFNNLLMAVMGSLELMRKRLPDDPKLHTLLENAMQGARRGSTLTQRMLAFAR----R 216

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------GEKIDLSRERAKI-LLNLFMVA 126
              V + + + ++ + + + +       +                  + ++ LLNL + A
Sbjct: 217 QDLVQTAVDIPNLIRGMTELLQRSLGPSIDIQTQFPLVIAPALTDANQLEMALLNLAVNA 276

Query: 127 HASLPRGGKVTISVQDS 143
             ++P GG++ I+ ++ 
Sbjct: 277 RDAMPDGGQIVIAAREE 293


>gi|213423581|ref|ZP_03356561.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 177

 Score = 39.1 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 73  QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 132

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 133 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 170


>gi|220915778|ref|YP_002491082.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953632|gb|ACL64016.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 525

 Score = 39.1 bits (90), Expect = 0.36,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 22/221 (9%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           S  L  L  + + + H++ +P+ ++  S+ELL  +  +  +  +L+ +    A       
Sbjct: 301 SERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVLREASRLDELV 360

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAK-I 118
              L+F R A    G+VD    L D  +V   D  A    +    +        ++ + +
Sbjct: 361 TEFLRFARPAPLRPGAVDLASLLEDALRVFTNDPAAAGLVLSREISPAPAACDPDQIRQV 420

Query: 119 LLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK----FTQIVDGNVE 173
           + NL   A  +L  RGG++ ++         F+++ +G      E+              
Sbjct: 421 VWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAERERIFLPFHTTKERG 480

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +Q      +   +  R+            +  L 
Sbjct: 481 TGLGLAVVQ-----RIVDAHGGRVEVRSAPGQGARFTVHLP 516


>gi|326331535|ref|ZP_08197825.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1]
 gi|325950791|gb|EGD42841.1| sensor histidine kinase [Nocardioidaceae bacterium Broad-1]
          Length = 367

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 65/201 (32%), Gaps = 18/201 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS----SMSAIIRLKFMRLAF 71
           L S + H++ +PI  +   LE LD+     +     ++       +  A       R   
Sbjct: 148 LLSDLAHELRTPIATLQAYLEGLDDGVRQWDQPTRNVLGDQVTRLARLASDLDSVSRAEE 207

Query: 72  GYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEK-IDLSRER-AKILLNLFM 124
           G            ++ +   D     +   D R+ V   G   + + R R  ++L NL  
Sbjct: 208 GQLQMTLEPATTAELVRAARDAVTARYEEKDMRIDVIERGPGHVAVDRTRFLQVLTNLLD 267

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SH 179
            A    PRGG VTI      +     +   G+     +    F +   G+   T D    
Sbjct: 268 NARRHTPRGGTVTIDTHAEDDWVTICITDTGDGISQSQLAHIFERFYRGDTARTGDEQGS 327

Query: 180 DIQFYYVILLAHENKIRLLPE 200
            I       +   +  RL   
Sbjct: 328 GIGLTISRAIVEAHGGRLDAY 348


>gi|222479351|ref|YP_002565588.1| multi-sensor signal transduction histidine kinase [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222452253|gb|ACM56518.1| multi-sensor signal transduction histidine kinase [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 655

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 73/200 (36%), Gaps = 20/200 (10%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLA 70
            S + HD+ +P+     +LEL  E G E+  ++ I     +A+ R++          R  
Sbjct: 457 ASMVSHDLRNPLSVASGNLELYRETG-EESRLETID----TALTRIQELITDLTSLAR-- 509

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
           +G       L+ + +   V  D   +      + + E   ++ + ++I      +   ++
Sbjct: 510 YGIPDENHELVSVSE---VARDAWELIDTRSATLSTEPCTVTGDASQITTLFENLFRNAV 566

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
             GG   ++V+    EN F ++  G+    P++   + D    +      I    V  +A
Sbjct: 567 GHGGP-DVTVRVGPLENGFYVEDTGDGI-PPDERDTVFDHGYTTGYSGSGIGLTIVSRIA 624

Query: 191 HENKIRLLPEIIDDHNVVLS 210
             +   +      +      
Sbjct: 625 QAHSWDVTLTDSTEGGARFE 644


>gi|62182624|ref|YP_219041.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130257|gb|AAX67960.1| sensory kinase in two component regulatory system with HydG
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717121|gb|EFZ08692.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 554

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 450 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 509

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 510 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547


>gi|309792751|ref|ZP_07687196.1| GAF sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225203|gb|EFO78986.1| GAF sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 471

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 23/213 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           L S  L A+  L + + H+I +P+ A  NSL L+++             I    +  I R
Sbjct: 242 LQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLAADDPQRAFLTIAQQELGRIAR 301

Query: 64  L-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRER 115
           +      F R       S    + L +  ++++  +     +   ++      I    ++
Sbjct: 302 IITRMRDFYRPTRAELASTSINVLLRETLELVQTHLRHSHINAVTELGSDIPAIIAHADQ 361

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            + + LN+ + A  ++P GG + +  +  +  +     I  +             G    
Sbjct: 362 LRQVFLNIILNACDAMPDGGDLRVRTRMLQARHEAPTTIEID-------ICDTGAGIPPE 414

Query: 175 TIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHN 206
            +  H  + +Y          + +   II  HN
Sbjct: 415 HL-PHLFEPFYTTKTHGTGLGLAISAHIISQHN 446


>gi|220916841|ref|YP_002492145.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954695|gb|ACL65079.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 633

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + H++ +P+  I ++L LL             +Q+I              L   R+A G 
Sbjct: 271 LSHELRNPLAPIRSALHLLSHPAASPAQGRRALQVIARQVDHLTRIVDDLLDVTRIARGK 330

Query: 74  TGSVDSLIGLGD-IEQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                  I L + I +  ED+  +  D+R+ +        L         A+++ NL   
Sbjct: 331 IELRRERIDLSEVIARTAEDYRDLLDDRRIALEVELSAGPLWADADPTRVAQVVGNLLSN 390

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           A    P GG+VT+     +   +  +   G     PE   +I + 
Sbjct: 391 AAKFTPPGGRVTVRAAAREGRAVIRVIDTGVGM-PPELLGRIFEP 434


>gi|86158632|ref|YP_465417.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775143|gb|ABC81980.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 633

 Score = 39.1 bits (90), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 17/165 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + H++ +P+  I ++L LL             +++I              L   R+A G 
Sbjct: 271 LSHELRNPLAPIRSALHLLSHPAARPAQTRRALEVIGRQVDHLTRIVDDLLDVTRIARGK 330

Query: 74  TGSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                  + L ++  +  ED+  +  D+R+ +        L         A+++ NL   
Sbjct: 331 IELRRERVDLAEVVARTAEDYRDLLDDRRIALEVGLPGGPLWADADPTRVAQVIGNLLSN 390

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           A    P GG+VT+         +  +   G     PE   +I + 
Sbjct: 391 AGKFTPPGGRVTVRADARGGRAVIRVIDTGVGM-PPELLGRIFEP 434


>gi|229819771|ref|YP_002881297.1| histidine kinase [Beutenbergia cavernae DSM 12333]
 gi|229565684|gb|ACQ79535.1| histidine kinase [Beutenbergia cavernae DSM 12333]
          Length = 395

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 22/179 (12%)

Query: 6   CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------I 53
            FN  + DL ++      + + + H++ +P+ A+   LE + +     +   L       
Sbjct: 123 AFNAMARDLASVDEARREIVANVSHELRTPVAALRAQLENMVDGVTRPDEEALQAALDQT 182

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTG---E 107
              +      L   RL  G TG     + + D  + + D  +   R     V+W      
Sbjct: 183 ERLTRLVTYLLDLSRLEAGATGLHLQDVEVQDFLEEVVDAASHAARAAGRTVAWEVSTSP 242

Query: 108 KIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +    R  A    +++LNL   A    P GG V +    +   +   + +       P 
Sbjct: 243 EDLHVRADAERLHQVVLNLLANATRHSPPGGTVRVRASQAPIGDEIVIDVVDEGTGIPP 301


>gi|49474327|ref|YP_032369.1| sensor histidine kinase [Bartonella quintana str. Toulouse]
 gi|49239831|emb|CAF26224.1| Sensor histidine kinase [Bartonella quintana str. Toulouse]
          Length = 829

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 17/156 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-MQLI--RLS 56
           M ++       M  V  L   I HD  + + AI  S + LL+     D     LI  + +
Sbjct: 440 MLEDKIMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNMHRSSDPAYADLINIKNN 499

Query: 57  SMSAIIRLKFMRLAFG-YTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVS-----WTG 106
           +  A   ++ + LAF          +     L DI  +I   +  + ++++      W+ 
Sbjct: 500 ANRAAALVQQL-LAFSRKQTLRPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSV 558

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           E    S +R   ++NL + A  ++  GG VTI+  +
Sbjct: 559 EVDQASFQRV--IINLVINARDAMSEGGVVTIATNN 592


>gi|89096820|ref|ZP_01169711.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088200|gb|EAR67310.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 591

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 65/210 (30%), Gaps = 22/210 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAFGYTG 75
           I HD+ +P+  I     LL+         +L      IR         ++   LAF    
Sbjct: 362 ISHDLRTPLSTIQGYAHLLESGQYRWTEEELLDMGKMIREKGDYMTALIEDFSLAFQLKN 421

Query: 76  -SVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS-----RERAKILLNLF 123
            S+   +   D+ +++   +         + V  ++ G    L      R   ++L NL 
Sbjct: 422 QSLPHQLKPADLNELVRGIMLKFVNDRTLEDVPFNFEGANTALFIQADIRWFERMLDNLI 481

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV-ESTIDSH 179
                  P+G  +T SV       I S+  NG           F +   G   +   +  
Sbjct: 482 YNCIKHNPKGTSITASVSSQGGTAIVSISDNGTGMDEETVRHLFDRYFRGTSTDEQTEGA 541

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            +       +A  +   +    +     V 
Sbjct: 542 GLGMSIARAIAELHGGSIHVSSVKHRGTVF 571


>gi|126740177|ref|ZP_01755866.1| two-component hybrid sensor and regulator [Roseobacter sp.
           SK209-2-6]
 gi|126718632|gb|EBA15345.1| two-component hybrid sensor and regulator [Roseobacter sp.
           SK209-2-6]
          Length = 772

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 19/180 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFG-------- 72
           I HD  + +  I  + ELL      D  +   I+ ++       + + LAF         
Sbjct: 412 IAHDFNNLLTVIQGNAELLKVAEDPDHELADAIKEAAQKGGELTRQL-LAFSRKQPLQPE 470

Query: 73  YTGSVDSLIGLGDIE-QVIEDFIAVD-KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
                + +  L +   +++ D I V   +    W         E A  L NL M A  ++
Sbjct: 471 AVNLSELVPDLAEALDRILGDGIKVHCTQDSGLWPVFADSSQFESA--LFNLAMNARDAM 528

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----HDIQFYYV 186
           P GG + IS ++    N  S          P  + +I   +  S + +      ++ Y+ 
Sbjct: 529 PDGGSIEISCRNRIWTNAASSGAE-TGILAPGDYVEIALKDTGSGMSAENLQRAVEPYFT 587


>gi|116049196|ref|YP_792002.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390378|ref|ZP_06879853.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
 gi|115584417|gb|ABJ10432.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 858

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74
           I HD  + +  I  SLEL+     +     LI     S+  A       L F R      
Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127
                 + L ++ + + D I       +    E  +          +    +LNL + A 
Sbjct: 560 TLKPQAVALRELVEGMRDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185
            ++  GG++ I    ++ + +    ++G  A R+         G + + + +  ++ ++
Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675


>gi|110833333|ref|YP_692192.1| two-component sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646444|emb|CAL15920.1| two-component sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 544

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 81/205 (39%), Gaps = 15/205 (7%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK- 65
           M+L +L  L + + H+I +P+ AI+++ +LL +     E    +Q+IR         +  
Sbjct: 325 MNLASLGRLSATLAHEIRNPLSAINHASDLLLDGDPSQEDQHLLQIIRNHVTRVNGIIHD 384

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L+    G  +  I    I++V E +       R+ +    +  ++  +R++++  L 
Sbjct: 385 VLDLSRRPKGQAERFILPTLIQEVTEQWKIKNTTGRIALHCQPDM-EVRFDRSQLIQVLD 443

Query: 124 MVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            +   +L  GG      +     D        ++ NG    F E    + +    +  D 
Sbjct: 444 NLIGNALRHGGDFCEVSLHCGHHDRTGLPWLRVQDNGQGISF-EARDYLFEPFYTTAKDG 502

Query: 179 HDIQFYYVILLAHENKIRLLPEIID 203
           + +  Y    L H N+  L  E   
Sbjct: 503 NGLGLYLCRELCHANQATLDLEESS 527


>gi|257486825|ref|ZP_05640866.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 394

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSR---ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +R         +   L R   +  +I   L  +   ++ 
Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIRSDIKMLERIRCDHERIAQLLSNLVSNAIS 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI----QFYY 185
            G  +  + V      ++F L +       PE     +       I D+         Y 
Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDAPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390


>gi|254503265|ref|ZP_05115416.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439336|gb|EEE46015.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 390

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 84/220 (38%), Gaps = 38/220 (17%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM---SAIIRLKFMR 68
           L A+L     H+I +P+  I  + +LL++   +++    +LI   +      + R++   
Sbjct: 157 LAAMLA----HEIKNPLSGIRGAAQLLEQSAPDEDRALTRLITDETDRIVKLVDRMEVF- 211

Query: 69  LAFGYTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSRER-A 116
                  S +  I          L  ++++ +   A D R+      +   +  ++++  
Sbjct: 212 -------SDERPIERDPVNIHVVLDHVKRLSDSGFARDNRITENYDPSLPPVYANKDQLI 264

Query: 117 KILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171
           ++ LNL   A  ++  G    G++ +S          S+    +    P +F    +G  
Sbjct: 265 QVFLNLIKNASEAI--GDDPDGEIRVSTAFRPG-VRLSVPGTEDKVSLPLEFCVQDNGPG 321

Query: 172 VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           V   +  H  + +           + L+ +II DH  V+ 
Sbjct: 322 VPEDLLPHLFEPFITTKTNGSGLGLALVAKIIGDHGGVIE 361


>gi|168699935|ref|ZP_02732212.1| probable sensory transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 266

 Score = 39.1 bits (90), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 57/236 (24%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR---------LKFMRL- 69
           H+I + +G +  +L+LL    ++     E   L R+S +S   R         L+F RL 
Sbjct: 30  HEIKNHLGTLSLNLQLLAEDFEDAQSPRERKALERVSRLSGECRKLLDLSNDFLRFARLR 89

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116
                  A G    VD++I            +A  + V++ W                  
Sbjct: 90  ELHTRPAALGAV--VDAVID-------FLGPVAKARGVEIKWFSAPEL---PLVCLDCDL 137

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARF----------- 160
             + LLNL + A  ++P GG +T+  +      + ++   +  G  AR            
Sbjct: 138 FEQALLNLGLNAFDAMPDGGTLTLIGRSGGRSDDASVKGDEGCGAGARTVCLDVIDTGAG 197

Query: 161 --PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P    ++      +  D + +       +   +   +  +    H    +  L 
Sbjct: 198 IEPAALAKLFRPFHTTKPDGNGLGLATTRKIVVAHGGTIEAQSAPGHGTRFTIALP 253


>gi|295699597|ref|YP_003607490.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia sp. CCGE1002]
 gi|295438810|gb|ADG17979.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia sp. CCGE1002]
          Length = 375

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 18/217 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67
            +L + + HD+ +P+GA+  S E L     +++    +     ++ +R        L   
Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADEQA-ATVAARVKNSSLRMARMVDQLLNLA 206

Query: 68  RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125
           RL  G        I L  +   VI++F +     Q+ +T            ++      +
Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASQKSGKQIVFTCTGNTAGAWDTDLVWQAVSNL 266

Query: 126 AHASLPRG---GKVTISVQDSKNEN---IFSLKINGNLARFPEKFTQ-IVDGNVESTIDS 178
              +L  G   G + + V     +      S +       FP  F   + +GN   + + 
Sbjct: 267 VSNALHHGAPEGDIGVEVDGEAEDCVRLKVSNRGTIPAEVFPHLFKAFVSNGNGARSREG 326

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  + V  +A  +   +     D+     +  L +
Sbjct: 327 LGLGLHIVQEIARMHGGDVSVVSSDEAGTTFTIELPR 363


>gi|239817394|ref|YP_002946304.1| histidine kinase [Variovorax paradoxus S110]
 gi|239803971|gb|ACS21038.1| histidine kinase [Variovorax paradoxus S110]
          Length = 458

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 20/152 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED------EVM-QLIRLSSMSAIIRLKFMRLAFGYT 74
           I HD+ +PI  +    +L+D+    +      + M  L+R           + R   G  
Sbjct: 251 ISHDLQTPITRMRLRTDLMDDAHDREKFRQDLDAMHSLVREGVT-------YARTLHGAA 303

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132
                +     +E ++ D+  V ++V++        +SR  A  +IL+NL      +L  
Sbjct: 304 EPPLRIDADALLESMVADYEDVGQQVRLEGKAGAPIVSRPHALRRILMNLI---DNALKF 360

Query: 133 GGKVTISVQDSKNEN-IFSLKINGNLARFPEK 163
           G +V + V   ++   + S+  NG      E 
Sbjct: 361 GSEVRLRVHAEEDGRLVLSVLDNGPGIPPDEL 392


>gi|291537556|emb|CBL10668.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 572

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58
           M KN    ++   +L  L+ S I H + +P+  +    + LL +   E+E M  +     
Sbjct: 339 MQKNRHKVDMERQELQMLI-SDISHQVKTPVSNLQMVTDTLLTKPVSEEERMDFL-QGIR 396

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGL-GDIEQVIED--FIAVDKRVQVSWTGE 107
           S   +L F+        RL  G          L   + Q +    + A  K + VS    
Sbjct: 397 SQTDKLDFLFQALVKTSRLETGAIRLEKKDSSLFHTLAQAMSSIVYAAEKKEIAVSVDCP 456

Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
           +  +    S+  ++ L NL   A    P GGK+++SV   +      +   G        
Sbjct: 457 ENLIISHDSKWTSEALFNLLDNAVKYTPSGGKISVSVVQWEMYVEVKVTDTGKGISESNQ 516

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +              I  Y    +       +            S +L 
Sbjct: 517 AAIFRRFYREEEVHDQQGVGIGLYLAREIVTRQGGYIKVVSELRQGSEFSIMLP 570


>gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 473

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 82/229 (35%), Gaps = 24/229 (10%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
             + +  D VA +     H++ +P+  I    E + +  +  E M+L   +    + RLK
Sbjct: 246 RMDAARRDFVAAVS----HELRTPLSIIQGYTEAILDGMVTPEEMKLYLDTIREEVERLK 301

Query: 66  FM--------RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLS---- 112
            +        RL  G        + LG+   QV   F A  +  ++ +  E    S    
Sbjct: 302 RLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLHFHVEVSPRSLVLG 361

Query: 113 -RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI 167
            ++R  ++++NL   A    P GG VT+ V+ +  E + +++  G        P  + + 
Sbjct: 362 DKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGPGIPPEELPYIWEKF 421

Query: 168 V--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              D     T     +    V  +   +  R+  +            L 
Sbjct: 422 YRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKVTLP 470


>gi|240146956|ref|ZP_04745557.1| two-component system histidine kinase [Roseburia intestinalis
           L1-82]
 gi|253578643|ref|ZP_04855914.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|283795678|ref|ZP_06344831.1| two-component system histidine kinase [Clostridium sp. M62/1]
 gi|317499118|ref|ZP_07957397.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|251849586|gb|EES77545.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|257200867|gb|EEU99151.1| two-component system histidine kinase [Roseburia intestinalis
           L1-82]
 gi|291077350|gb|EFE14714.1| two-component system histidine kinase [Clostridium sp. M62/1]
 gi|291524078|emb|CBK89665.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Eubacterium rectale
           DSM 17629]
 gi|316893638|gb|EFV15841.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 343

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58
           M KN    ++   +L  L+ S I H + +P+  +    + LL +   E+E M  +     
Sbjct: 110 MQKNRHKVDMERQELQMLI-SDISHQVKTPVSNLQMVTDTLLTKPVSEEERMDFL-QGIR 167

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGL-GDIEQVIED--FIAVDKRVQVSWTGE 107
           S   +L F+        RL  G          L   + Q +    + A  K + VS    
Sbjct: 168 SQTDKLDFLFQALVKTSRLETGAIRLEKKDSSLFHTLAQAMSSIVYAAEKKEIAVSVDCP 227

Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
           +  +    S+  ++ L NL   A    P GGK+++SV   +      +   G        
Sbjct: 228 ENLIISHDSKWTSEALFNLLDNAVKYTPSGGKISVSVVQWEMYVEVKVTDTGKGISESNQ 287

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +              I  Y    +       +            S +L 
Sbjct: 288 AAIFRRFYREEEVHDQQGVGIGLYLAREIVTRQGGYIKVVSELRQGSEFSIMLP 341


>gi|75909975|ref|YP_324271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703700|gb|ABA23376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 714

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 42/183 (22%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMR 68
           L S I HD+ + +  I  S++LL      ++      ++++  +S  A   +K    F R
Sbjct: 346 LASGIAHDLNNILTPIMASIQLLALKSSSNDARNHQLLKILEHNSKRAADLVKQILTFAR 405

Query: 69  LAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS------WTGEKIDLSRERA 116
                 GS    + L       +IEQ++        ++         WT +      +  
Sbjct: 406 ------GSETRGVTLQIEPLLLEIEQILNSTFPKSIKITKHLPPENLWTIQAD--PTQIH 457

Query: 117 KILLNLFMVAHASLPRGGKVTISVQ-------------DSKNENIFSLKINGNLARFPEK 163
           ++L+NL + A  ++P  G ++I  +             D++      + I       P  
Sbjct: 458 QVLMNLCVNARDAMPGNGTLSIFAENLLVDKNFAKMNLDAEVGPYVVITIADTGFGIPPL 517

Query: 164 FTQ 166
             +
Sbjct: 518 ILE 520


>gi|114319381|ref|YP_741064.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225775|gb|ABI55574.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 488

 Score = 39.1 bits (90), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 26/221 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAI- 61
           + +  L A+  L S I H+I +P+G + N+L      G  D      + L+    +    
Sbjct: 263 VRADRLAAIGRLTSGIAHEINNPLGGMLNALNTYKHHGAPDPFTLKTLSLVERGLLQIRD 322

Query: 62  ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRE 114
                L   RL     G       L D+  ++   I   K+V + W     G     +  
Sbjct: 323 IVGALLVETRL----KGEDLWAEDLEDVRTLLAPDIRR-KQVNLDWDNRLQGPVPLPATP 377

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171
             ++L+NL + A  +  + G+V   ++      + ++  +G+     R    F      +
Sbjct: 378 VRQVLINLLLNAVRAAQQRGRVDCRLERVDGWLLITVWNDGDHIPAERMDHLFEPFSGAS 437

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +       +  +   R+  E   D    +  L
Sbjct: 438 AVGNGLGLWV----TYQIIEQLSGRIEVESRPDDTRFVVQL 474


>gi|326629557|gb|EGE35900.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 552

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 448 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 507

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 508 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 545


>gi|213969583|ref|ZP_03397719.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301383357|ref|ZP_07231775.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13]
 gi|302058811|ref|ZP_07250352.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302134500|ref|ZP_07260490.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213925679|gb|EEB59238.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
          Length = 403

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++D+ +Q+   I  S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDDKTLQVAQHILTSGQRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +RV     +      ++L R +  +I   L  +   ++ 
Sbjct: 242 PLSIHDAHGLDKTLEHVVSEIQRVHPSRLIRSNIGALELIRCDHERIAQLLSNLVSNAIT 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185
            G    ++ V      + F L +       PE     +       I         +  Y 
Sbjct: 302 HGASDSSVEVAAGVLGDRFVLSVANQGDPIPESMRSQLFLPYSRPITNEPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIAQAHGGTLDVCSTQEGGTVFTFSMP 390


>gi|161617312|ref|YP_001591277.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161366676|gb|ABX70444.1| hypothetical protein SPAB_05163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 527

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 423 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 482

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 483 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 520


>gi|302344709|ref|YP_003809238.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
 gi|301641322|gb|ADK86644.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
          Length = 573

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 19/224 (8%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-K 65
           + +  L +  +L + + H+I +P+ AI    +LLD         +    +      R+ +
Sbjct: 343 MHAEKLASVGILAAGVAHEIGNPLAAIGGYAQLLDSDDTTPAERREFAGAIAEQTERINR 402

Query: 66  FMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---- 118
            +R    Y+         + +    + + +     KR+       + DL+R   K+    
Sbjct: 403 IIRELLDYSRPSQYLGQPVDVNQAIEAVLNMFFTSKRLSQDNLSIQRDLARNLPKVSLDR 462

Query: 119 ------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                 +LN+ + A  ++  GG++TIS ++            G     P+K   I D   
Sbjct: 463 DQLQQVVLNMVINAAQAMAGGGQLTISTREQAGWLRMEFADTGPGI-GPDKLPLIFDPFF 521

Query: 173 ESTIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
            +            I   +      R+            + LL 
Sbjct: 522 TTKPPGQGTGLGLSICDRIISAGGGRIEVASALGKGTTFTVLLP 565


>gi|226357508|ref|YP_002787248.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319499|gb|ACO47494.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 456

 Score = 39.1 bits (90), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 23/171 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRLKFMRLAFG 72
           L + I HD+ +P+  I  +LE + +   +    +L R           +  L+F+ LA  
Sbjct: 237 LTADIAHDLNTPLAVISGTLEAILDGTFKPTSERLKRLHQETQHVSQLVNDLRFLSLA-- 294

Query: 73  YTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA------KILL 120
             G +     L ++E  I         +A    V +    +   + R         ++L 
Sbjct: 295 DAGELHMNHKLAEVEPFIRGAVATFEEMARQGDVTLETHLKVAGV-RASVDVVRITQVLQ 353

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV 168
           NL   A A    GG+V ++ + +      S+K  G+  +    P  F ++ 
Sbjct: 354 NLLSNALAHTSAGGRVVVTAEVAGQSLTVSVKDTGDGIQPEHLPHVFNRLY 404


>gi|328952443|ref|YP_004369777.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452767|gb|AEB08596.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 614

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 13/157 (8%)

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAK- 117
           F R              L ++ Q +   +    +        +++ T   ++    + K 
Sbjct: 460 FTR----PAPPFKQEADLNELVQDVAAMMGEATQEMGVKIETKLANTLPLVNFDANQMKQ 515

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           +L+NL   A  +   GG +TIS    +++   S+   G   + PE   QI +    +   
Sbjct: 516 VLINLVKNALEATDSGGVITISTSAWEDQVRLSVTDTGKGIQ-PEIMPQIFNPFFTTKKT 574

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +  +  ++   +  E   D     +  L 
Sbjct: 575 GTGLGLAVINKIIEDHNGAITVESSKDRGTTFTISLP 611


>gi|219853149|ref|YP_002467581.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219547408|gb|ACL17858.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 746

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 71/172 (41%), Gaps = 15/172 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M + +  N+  ++ + +L   I HD  + + AI  ++EL    LDE    DE M  +   
Sbjct: 503 MQEEL-LNIERLESIGVLAGGIAHDFNNLLSAILGNIELARMDLDEDSPLDERMAEMEQV 561

Query: 57  SMSAIIRLKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
            + A    + + L F   G       + LG + +   +F      V+ S           
Sbjct: 562 VLRATALTRQL-LTF-AKGGAPIRRWVHLGPMIKDTAEFTCRGSPVKCSCRVPDDLWITE 619

Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-KINGNLARF 160
           + + +  +++ N+ + A  ++P GG + ++ ++S+ +    +    G   + 
Sbjct: 620 VDQNQISQVINNIVLNAVQAMPDGGILRVTAENSEYDCGEVVPLAAGRYVKI 671


>gi|329934373|ref|ZP_08284452.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329305969|gb|EGG49824.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 478

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 21/216 (9%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIRLSSMSAI----IRLKFM 67
            + + H++ +P+ A+     LLD+            E + L+   +          ++  
Sbjct: 262 AADVSHELRTPLAAMTAVTGLLDDDAAAGHLGPETSEAITLVADETRKLAHLVEDLMEIS 321

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVA 126
           R   G        I LG++            RV V         +R +  +I + L  + 
Sbjct: 322 RFDAGAARLDLDEIDLGELLHKTLALRHWQDRVTVD--VPGGLRARLDPRRIDVVLANLT 379

Query: 127 HASLPRGG---KVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSH 179
             +L  GG   +V I  +   +  + ++  NG        P  F +   G+   T  +  
Sbjct: 380 GNALRHGGPGARVRIRARTEADRLVLTVHDNGPGIAEDMLPHVFDRFTKGDTARTRSEGS 439

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +        A  +   L      +   V +  L +
Sbjct: 440 GLGLAIAAENARLHGGTLTAANSTEGGAVFTLTLPR 475


>gi|307725769|ref|YP_003908982.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia sp. CCGE1003]
 gi|307586294|gb|ADN59691.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia sp. CCGE1003]
          Length = 375

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67
            +L + + HD+ +P+GA+  S E L     + +    +     ++ +R        L   
Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADQQS-ATVAARVKNSSLRMARMVDQLLNLA 206

Query: 68  RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNL 122
           RL  G        I L  +   VI++F + +   ++ +T               + + NL
Sbjct: 207 RLQGGRLPLQPRSIELASLCRSVIDEFTSRENGKRIVFTSHGNTAGAWDTDLVWQAVSNL 266

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A      GG V++ V  + ++ +  LK+       PE F  +      +   S   Q
Sbjct: 267 VSNALHHGAEGGDVSVEVDGAADDFV-RLKVANRGVIPPEVFPHLFKAFGPNNGGSRSRQ 325

Query: 183 -----FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 + V  +A  +   +  +  +    V +  L +
Sbjct: 326 GLGLGLHIVHEIARMHGGSVSVKSDESAGTVFTIELPR 363


>gi|108757007|ref|YP_635070.1| sensory box histidine kinase TodK [Myxococcus xanthus DK 1622]
 gi|33113335|gb|AAO48790.1| TodK [Myxococcus xanthus]
 gi|108460887|gb|ABF86072.1| sensory box histidine kinase TodK [Myxococcus xanthus DK 1622]
          Length = 501

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 66/219 (30%), Gaps = 36/219 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----------FG 72
           HDI SP+GAI N   +L   G +++     R S   A   ++  RL             G
Sbjct: 275 HDIRSPLGAIMNWSRVLAAGGTDEDAQ---RTSQRIATAAVRIERLTRLLLDFTRTRLMG 331

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD-----------KRVQVSWTGEKIDLSRERAKILLN 121
                   + L D+   +     V               Q  W  +++      A++  N
Sbjct: 332 GVAIEPRPVDLKDLVAKVAHEFGVAFPQRTVEVDPKGNTQGVWDPDRL------AQVTSN 385

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177
           L   A    P    V ++ +  +   +  +   G        P  F     G   S    
Sbjct: 386 LVENALKYSPPETPVRLTARGLRTRVVLEVHNAGRPIPDNLLPHLFEPFRGGPQSSRTLK 445

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            S+ +  + V  +   +   +     +      +  L +
Sbjct: 446 MSYGLGLFIVREIVQAHGGTIEVRSDEAEGTTFTVTLPR 484


>gi|83311264|ref|YP_421528.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946105|dbj|BAE50969.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 860

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 17/144 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD------EVGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           I HD  + +G I  +LELL+      E G++     ++  R  +      L F R     
Sbjct: 496 IAHDFNNLLGIITGNLELLERTVQGSESGMKRVQTALRSARRGADLTRRLLSFSRQDPKA 555

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERAK-ILLNLFMVA 126
            G   S   + D    +++ +        + R Q++      D++R   +  LLNL + A
Sbjct: 556 QGK--SRTDIADAISGMQEMVQRSLTKVIEVRTQMAADTWHADINRSEFEDCLLNLCLNA 613

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P+GG +T+   + + ++   
Sbjct: 614 RDAMPQGGVLTVEASNVEVDDEMR 637


>gi|161505339|ref|YP_001572451.1| sensor protein ZraS [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866686|gb|ABX23309.1| hypothetical protein SARI_03484 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 487

 Score = 39.1 bits (90), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 383 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 442

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 443 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 480


>gi|126729800|ref|ZP_01745613.1| sensory box sensor histidine kianse/response regulator [Sagittula
           stellata E-37]
 gi|126709919|gb|EBA08972.1| sensory box sensor histidine kianse/response regulator [Sagittula
           stellata E-37]
          Length = 765

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + + AI    +LL    D+   +   +  I  ++  A   +  + LAF    ++  
Sbjct: 404 HDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAALVGQL-LAFSRKQTMQP 462

Query: 80  LI-----GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
            +      L D+  ++   +    R+ +        +  +R ++   ++NL + A  ++P
Sbjct: 463 EVLDLRDTLSDLAHLLNRLVGEKVRLTLRHDPALPPVRGDRRQLEQVMMNLVVNARDAMP 522

Query: 132 RGGKVTISVQ 141
            GG++ +  +
Sbjct: 523 EGGEILVETE 532


>gi|256422336|ref|YP_003122989.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037244|gb|ACU60788.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 444

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 29/215 (13%)

Query: 24  HDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG---YTGS 76
           HD+ +PI  I +   L+ E       ED+ +  I+ +  +A   ++ + LA         
Sbjct: 231 HDLRNPIAGIRSVTHLMQEYPYTPEQEDKYLFWIKDACETADQIIEELLLAAKQRESALL 290

Query: 77  VDSLIGLGD-IEQVIEDFIAVDK--RVQVSWTGEKIDLSR----ERAKILLNLFMVAHAS 129
               I L + +++V ++++      R  +     +   +R    +  +++ NL   A   
Sbjct: 291 QTDYISLNEWLQEVRDNWLQQSGFNRAILLELPPEELKARIHTGKMQRVVDNLLHNAAKF 350

Query: 130 LPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQI-------VDGNVESTIDSH 179
            P  G +TI ++  +     S+   G     A  P  F Q        ++    + +  H
Sbjct: 351 TPIEGDITIGMRRHRGGVRISIADTGIGIPEALIPNLFDQFTSSSRKGLNEEPSNGLGLH 410

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    L HE+  R+     ++   + S  L 
Sbjct: 411 I-----CKQLVHEHGGRIYVHSQENKGTIFSIDLP 440


>gi|161527757|ref|YP_001581583.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160339058|gb|ABX12145.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 459

 Score = 39.1 bits (90), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 86/215 (40%), Gaps = 26/215 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
           + +RI HD+ +P+  I N++ ++     E      +   +I+        ++  + LAF 
Sbjct: 249 MSARITHDLRNPLTTIKNAVAVMKMKNPEKIKENQQYFDMIQDGVTRMNHQIDEV-LAFV 307

Query: 73  YTGSVDS-LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128
                +   +   +I   + + I++ + +++S +     +  ++ ++   L+N+   +  
Sbjct: 308 KAKEPERNFVEFSEISNNVLNTISIPENIKISISESNEKIWCDKIQLQNVLINMISNSVQ 367

Query: 129 SLPRG-GKVTISVQDSKNENIFSLKINGNL-------ARFPEKFTQIVDGNVESTIDSHD 180
           ++ +  G++ I  +     +  ++K NG         A F   +T   DG     +   +
Sbjct: 368 AIGKNQGEIIIDYKIEGEFDKITVKDNGTGIPENLLDAVFEPLYTTKQDGTGLGLVSCKN 427

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       +  ++  + +D+   + + LL K
Sbjct: 428 A--------VEAHNGKIYAQNLDEGGAIFTILLPK 454


>gi|330988658|gb|EGH86761.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 394

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 25/212 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMVAHA 128
             S+     +++ +E  ++  +RV             E+I    ER A++L NL      
Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLV---SN 298

Query: 129 SLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI----Q 182
           ++  G  +  + V      ++F L +       PE     +       I D+        
Sbjct: 299 AISHGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDAPQAGLGLG 358

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y    +A  +   L      +   V +  + 
Sbjct: 359 LYIASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390


>gi|297570096|ref|YP_003691440.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926011|gb|ADH86821.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 909

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 61/137 (44%), Gaps = 19/137 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + I HD  + +  I +  EL+      +  + D++ +++ L    A +  +   LAF 
Sbjct: 544 LAAGIAHDFNNILTGILSYSELILRGNTSDPALRDDISRILELGRRGAGLTRQL--LAF- 600

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-----SRERAKILLNL 122
            +   ++ +    + +++E+ +    R     ++V++              +  +++LNL
Sbjct: 601 -SREQEARMQPLKLNELVENLMKTLGRLIGEDIEVTFNLSPDLGNVNGDPGQLEQVILNL 659

Query: 123 FMVAHASLPRGGKVTIS 139
            + A  ++P GG + I+
Sbjct: 660 VVNARDAMPTGGTIVIT 676


>gi|225155881|ref|ZP_03724367.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803431|gb|EEG21668.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 662

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 13/193 (6%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFG 72
           L  L+   I HD  + +  I   +EL    G  DE +Q  +R +  +A   +  +R    
Sbjct: 271 LGTLVGG-IAHDFNNLLAIIKGFIELSLTQGPADETLQRYLREAYNAAQRSIGLVRQILT 329

Query: 73  YTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAK-ILLNL 122
           ++   +    L ++ Q+I + +          ++ R Q+            + + +L+NL
Sbjct: 330 FSRKAEVSYSLINLNQLIGEHVQMLAETFPRTIEFRQQLDPALPTFAADPNQLQQVLMNL 389

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
            + A  ++P GG +T++ +      +  L+ +               G     +  H  +
Sbjct: 390 CVNARDAMPDGGALTLATRRVPGSELAVLRADEKQDYVEITVADTGTGMTPE-VREHIFE 448

Query: 183 FYYVILLAHENKI 195
            ++    A     
Sbjct: 449 PFFTTKQARAGTG 461


>gi|330896143|gb|EGH28364.1| multi-sensor hybrid histidine kinase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 726

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFG-YT 74
           I HD  + +G+I  SLEL+                 L   S   A    + + LAF    
Sbjct: 354 IAHDFNNLLGSISASLELMQLRIAAGRAADIGKYQTLALTSVQRAAALTRRL-LAFSRQQ 412

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHA 128
                ++   ++   +ED I       V    +   +        +    LLNL + A  
Sbjct: 413 PLDPKVVDPNEVVAGLEDMIRRTMGPDVVVRCDLASVGCISCDINQLENALLNLAINARD 472

Query: 129 SLPRGGKVTIS 139
           ++  GG +T+ 
Sbjct: 473 AMAAGGTLTLR 483


>gi|154246365|ref|YP_001417323.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154160450|gb|ABS67666.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score = 39.1 bits (90), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 15/186 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           + HD+ +P+ ++    E + +  + ++++  I      A   L F+R     T      +
Sbjct: 272 LSHDLRTPLTSLRLRAEFVADDELREKMLGTIAEIQGMAEASLAFVRA--DATAETTRTV 329

Query: 82  GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
            L   +E + +D   +   V    + +     R  A  +   NL      ++  G +  +
Sbjct: 330 DLSALVESLCDDLAEIGWDVTFEESPKVGCRCRPDAVRRACRNLV---ENAVRYGKRARV 386

Query: 139 SVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
            V+ S +  +  ++ +G              F ++       T   H +    V  +A  
Sbjct: 387 RVERSGDAALIVVEDDGPGIAEELKEQVFAPFFRLESSRCMET-GGHGLGLAIVRTVARR 445

Query: 193 NKIRLL 198
           +   + 
Sbjct: 446 HGGDVT 451


>gi|121606714|ref|YP_984043.1| integral membrane sensor signal transduction histidine kinase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595683|gb|ABM39122.1| integral membrane sensor signal transduction histidine kinase
           [Polaromonas naphthalenivorans CJ2]
          Length = 435

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 10/185 (5%)

Query: 22  ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRL--KFMRLAFGYTGSVD 78
           I HD+ SP+  I  + ELL D  G+ D+   ++R   + A  RL   F+ LA      +D
Sbjct: 233 ISHDLRSPLSRIRMAAELLPDAPGVRDKQASIVRN--VQAADRLVGAFLDLARASAEPLD 290

Query: 79  SLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KV 136
             + L  +  ++++       R+++   G         A +   L  +   +   G   V
Sbjct: 291 ERVDLAALTRRLLDSGDHEGVRLELLAAGPLWLQPASSAALERLLVNLLDNAAKYGQPPV 350

Query: 137 TISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193
            +S+Q    + + +++ +G                 G+ +  +    +           +
Sbjct: 351 VVSLQARATQAVLTVRDHGAGIAPGQMDALRKAFFRGSHDRGLPGTGLGLAIAERSVQRH 410

Query: 194 KIRLL 198
              + 
Sbjct: 411 GGEMT 415


>gi|159897348|ref|YP_001543595.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890387|gb|ABX03467.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 393

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 77/225 (34%), Gaps = 25/225 (11%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           L    L A   L + I H+I +P+ A  N+      + +E+++ + +R S++  + R + 
Sbjct: 171 LQGARLAAVGQLSASIAHEINNPLYAARNA-----LLLLEEDLPEEVRESTVMQLARDQL 225

Query: 67  MRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
            R+A         +       +   L  + +       +  R   +      D+      
Sbjct: 226 TRIAGIIERMRDFYRPMRGEMAPTDLNAVIEETLALAGLHARHNNTMITFTPDIHLPAVV 285

Query: 117 -------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++ LNL + A  ++  GG +T++ + + +     +   G      +    + +
Sbjct: 286 CNADQLRQVFLNLVLNALDAMTNGGTLTVTTEAATSFVTIEICDTGTGI-PDDIRAHLFE 344

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +       +  ++  ++  +           +L 
Sbjct: 345 PFFTNKPNGTGLGLPISAHIVTQHGGQIEVDSTVGVGSTFRVVLP 389


>gi|320102387|ref|YP_004177978.1| histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319749669|gb|ADV61429.1| histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 365

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           ++   ICH++ + +  I N  +L    D+        + I  ++  A    +      G 
Sbjct: 52  MIAGGICHELNNLLTPILNYAKLGLRSDDPAYRTRAFEKILEAAQQAA---QITGGVLGL 108

Query: 74  TGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA------KILLN 121
                      D+  ++E  +       ++ RV + +   +    R R       ++L N
Sbjct: 109 ARPSGETRVPTDLAALVEQVLRLTRKDLMEHRVTLEYHARE--RPRARVNPAQIQQVLFN 166

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L + A  ++P+GG++ + V       +  L +  +       
Sbjct: 167 LVINARQAMPQGGRMLVQVGLDATGRMAELVVADSGVGIDPA 208


>gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 726

 Score = 39.1 bits (90), Expect = 0.45,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 64/195 (32%), Gaps = 9/195 (4%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSA-IIRLKFMRLAFGYTG 75
            S + HD+ +P+      LELL E    +  + +        +     L   R   G + 
Sbjct: 529 ASVVSHDLRNPLTVARGQLELLREESDSEHIDAIDTAHQRMDTLIDDLLTLARD--GASP 586

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           +   ++ L    Q     +   K   +    ++  +  + +++      +   ++  GG 
Sbjct: 587 ASPVVVDLEQFVQTCWQNV-DTKAATLRTDIDRP-IRADESRLRQLFENLVRNAVEHGGD 644

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195
             +SV   +  + F ++ NG     PE+   +      + ++        V  +A  +  
Sbjct: 645 -DVSVTVGELADGFYVEDNGAGIPEPER-GDVFSAGYSTAVEGTGFGLSIVKQVADAHGW 702

Query: 196 RLLPEIIDDHNVVLS 210
            +      D      
Sbjct: 703 TVRVVSGADGGARFE 717


>gi|309792129|ref|ZP_07686601.1| sensor histidine kinase PAS domain-containing protein
           [Oscillochloris trichoides DG6]
 gi|308225670|gb|EFO79426.1| sensor histidine kinase PAS domain-containing protein
           [Oscillochloris trichoides DG6]
          Length = 663

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII- 62
            S  + +L  +   I H+I +P+  I  S +LL    D+  +  + +Q I  S+  A + 
Sbjct: 441 QSAKIASLGVMAGGIAHEIRNPLAIIAASAQLLEDHPDDPELRQQCVQKIVTSAQRASLI 500

Query: 63  ---RLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               LKF        R    +    ++   L     V +  +  D    V          
Sbjct: 501 IEQLLKFSHPPQERFRPLNIHATLEETFNLLNHQMLVSQVILRRDFSPDV---PRLYGNP 557

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               ++  NL + A  ++P+GG++T++ + S           G
Sbjct: 558 ELLQQVFTNLILNACNAMPQGGQLTVTTRLSGEHVELRFTDTG 600


>gi|167044201|gb|ABZ08882.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG5H11]
          Length = 795

 Score = 39.1 bits (90), Expect = 0.47,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 19/158 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQLIR----LSSMSAIIR 63
           L + + HD+ +P+GAI N   LL          +     +  +++I      S+ S    
Sbjct: 580 LSAGMAHDLRNPLGAIRNVTYLLKNELVTKGVFEGNAKLNTCIEIIDNQVNKSNQSITDL 639

Query: 64  LKFMRLAFGYTGSVDSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILL 120
           + F +L       V++ +   L    + +     +D    +    + +    E+  ++ +
Sbjct: 640 MDFAKLK--EATLVETNLDVVLAQALETLSQRDDIDLLKNIEPNIQPVMADGEQLQRVFV 697

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           NL   A  ++P GG +TI+ ++       +    G+  
Sbjct: 698 NLANNAQEAMPDGGSLTIAAKNVNGTVQITFSDTGDGI 735


>gi|313672158|ref|YP_004050269.1| pas/pac sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938914|gb|ADR18106.1| PAS/PAC sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 825

 Score = 38.7 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 20/216 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           L+   I HD  + + AI+N + +      E+E +     + ++     KF+         
Sbjct: 467 LVAGGIAHDFNNILSAINNYMLVAKMSFGENEKVVEFANNVITLCGTGKFLANKLLVLSK 526

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------AKILLNLFM 124
               I L  +E  +   I+   R  +S T  K D+ +              A+I  NL +
Sbjct: 527 GGEHISL--VETDLYSLISETARFVLSGTNIKYDVKKADYYCYGFVDQNLVAQIFHNLLI 584

Query: 125 VAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQ-IVDGNVESTIDS 178
            A  ++P GG++ I ++         +    + +       PE     I      +    
Sbjct: 585 NAKQAMPEGGEIKIYIELDDSFLIFEKPSIKITVEDTGPGIPEDVIDKIFQPFFTTKQHG 644

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  Y V  +  ++  R+  +         +  L 
Sbjct: 645 SGLGLYIVKAIVEKHDGRITVQSTKGKGATFTINLP 680


>gi|262197459|ref|YP_003268668.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262080806|gb|ACY16775.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 597

 Score = 38.7 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 15/162 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70
           A + + + HD+  PI A+ +++EL  E   +     L+       + RLK       RLA
Sbjct: 358 ARVAAGLAHDLRMPIEAVRSAVELSAERPDDRASRYLLSKVRSRDLPRLKRFVDDLNRLA 417

Query: 71  F-GYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSRERA-KILLNLF 123
             G  G     +   ++   I   +    +      +V        L +    + LLNL 
Sbjct: 418 HEGNLGLEYEPVTPLELLSEIRTELEAAPKWGGVSFEVVGDASPATLDKNLVRRALLNLA 477

Query: 124 MVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             A  +   L  GG V + ++D ++E +  L++       P 
Sbjct: 478 GNAAEACLELGPGGTVYLEMEDREDETLIDLRVRDTGVGIPA 519


>gi|210633429|ref|ZP_03297777.1| hypothetical protein COLSTE_01690 [Collinsella stercoris DSM 13279]
 gi|210159153|gb|EEA90124.1| hypothetical protein COLSTE_01690 [Collinsella stercoris DSM 13279]
          Length = 387

 Score = 38.7 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 28/212 (13%)

Query: 22  ICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLA 70
           I H + +P+ +I  S EL    L E G   E+++ +RL               LK  R+ 
Sbjct: 158 ISHQLKTPLTSIAISTELIRDRLAERGDAPEIVERLRLVQRLQGRVEDLVAALLKLARID 217

Query: 71  FGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            G    V + +   ++ +       V  D   VD    +              + L N+ 
Sbjct: 218 AGVIKLVKAPVDARELVRKSFEPLAVAFDIAGVDFETSIQPGAGYEGDLAWSVEALENIL 277

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHD 180
                  P GG V +   +        ++  G     A  P  F +   G     ++S +
Sbjct: 278 KNCMEHTPAGGTVRVRATEDILACRIRIEDTGPGIDEADLPHIFERFYRGKRADAVESSE 337

Query: 181 IQFY-------YVILLAHENKIRLLPEIIDDH 205
           +              L       L  +   D 
Sbjct: 338 VAPVGVGIGLSLAKSLVAAQGGTLTADNARDA 369


>gi|196234723|ref|ZP_03133533.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196221213|gb|EDY15773.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 286

 Score = 38.7 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 10/133 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFG 72
           +R+ HD+ + +  I  SLE+            ++ + + S++ A   ++    F R A  
Sbjct: 44  ARMAHDLNNLLSPILMSLEVFRPHLTKTNHQALLDIAKKSTVRAAELVRHVLAFSRGAEE 103

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHAS 129
             G +D    + +I  V +        V+V        +        + LLNL   A  +
Sbjct: 104 EGGEIDPRAIVEEIGAVAQSTFPGSIGVRVDAPKHMPRILGNATQIHRALLNLCTNARDA 163

Query: 130 LPRGGKVTISVQD 142
           +P GG +T+   +
Sbjct: 164 MPEGGTLTLRASN 176


>gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
 gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
          Length = 1416

 Score = 38.7 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 70/204 (34%), Gaps = 27/204 (13%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------LKFMRL 69
            + H++ +P+  IH   ELL     E   + ++R  +++AI R            L   R 
Sbjct: 1049 LSHELKNPLNLIHVKAELLSLA-PETRELDVVRD-AVNAIQRSVMSQAKIIDDLLDMSRA 1106

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAK---ILLN 121
              G          L  + + + D    D       V +      + +  +  +   IL N
Sbjct: 1107 RTGKLTLDRVPTDLAALLRTLVDACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWN 1166

Query: 122  LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS 178
            L   A    P GG VT+++    +     +   GN       P+ F      +V  +  +
Sbjct: 1167 LLSNALKFTPAGGTVTLTLAREGDGARVDVADTGNGIAPDFLPKIFDMFSQASVPRSRST 1226

Query: 179  H--DIQFYYVILLAHENKIRLLPE 200
            H   I    V  LA  +  R+   
Sbjct: 1227 HGLGIGLSLVKHLAEMHGGRIEAH 1250


>gi|154141|gb|AAA27148.1| ORF 1 [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 208

 Score = 38.7 bits (89), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 104 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 163

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 164 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 201


>gi|320161337|ref|YP_004174561.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995190|dbj|BAJ63961.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 727

 Score = 38.7 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 77/227 (33%), Gaps = 35/227 (15%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           D V+L+     H++ +P+  I   +ELL            + +QL++         L+  
Sbjct: 493 DFVSLVS----HELRAPLTNISGGIELLLLRSKRLPRDATQTLQLVQ------SEILRLT 542

Query: 68  RL--------AF--GYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEK--IDLSRE 114
           R         A   G      + I +  + +V++   +      ++ W       DL  +
Sbjct: 543 RFVESILDLSALDAGKMPLFLAPISVHSVIEVVKRQFSHTPNAGRIRWEIPDKFPDLLAD 602

Query: 115 RAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169
              +   LF +   ++     G++ +     +++    ++ +G        P  FTQ   
Sbjct: 603 EQALTSVLFHLLDNAMKYAPEGEIVVKAWSKEDKGFLEIRDHGQGIPEEDLPLLFTQFFR 662

Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    TI  H +  Y V  L       ++   + +     +  L 
Sbjct: 663 SRMSDSQTIYGHGLGLYMVQRLLEAMNGTIMVRNLPEGGACFTCSLP 709


>gi|153006891|ref|YP_001381216.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030464|gb|ABS28232.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 551

 Score = 38.7 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 16/152 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAI----IRLKFMRLAF 71
           S + H++ +P+  I NS+ +L+      E       +I   +          L   R+A 
Sbjct: 200 SLLSHELRNPLAPIRNSIYVLEHAEPAGEQARRARAVIERQTDHLTKLVDDLLDVTRIAK 259

Query: 72  GYTGSVDSLIGLGD-IEQVIEDF----IAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123
           G      + + L     +  ED     +A    + +      + +  +  ++   L NL 
Sbjct: 260 GKIALRRARLDLATVARRTGEDLRSIVVARGLELVLELPSAPVLVDGDETRLGQVLGNLL 319

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKING 155
             A    P GG++ +S +         ++  G
Sbjct: 320 QNAAKFTPAGGRIVLSARAGGGVAEIRVRDTG 351


>gi|107102721|ref|ZP_01366639.1| hypothetical protein PaerPA_01003787 [Pseudomonas aeruginosa PACS2]
          Length = 482

 Score = 38.7 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 283 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 333

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 334 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 388

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  +S++D     +  +  +G     PE+  + +       +     Q Y +
Sbjct: 389 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 444

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 445 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 478


>gi|213612380|ref|ZP_03370206.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 297

 Score = 38.7 bits (89), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 193 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 252

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 253 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 290


>gi|332982073|ref|YP_004463514.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699751|gb|AEE96692.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 485

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 82/223 (36%), Gaps = 25/223 (11%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSS----MSA 60
           S  L AL  L + I H++ +P+  +  +++L+ +   +   MQ    +I+          
Sbjct: 255 SERLAALGQLVAGIAHEMRNPMAIVKATVQLMQKQYKDSSEMQQYLDVIKEQVDRQDKIV 314

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKIDL 111
              L F R     + S+   I L ++ + +         +  I + ++ Q+       D 
Sbjct: 315 KELLDFSR----PSKSLWEDISLVELLKSVITFTRPYMDQYHIELSEKYQIDLPLIIADG 370

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            R + ++ +N+ + A  S+P+GG++ ISV   +     S    G+     E    I +  
Sbjct: 371 ERLK-QVFVNIIINAVQSMPKGGQLMISVYSDEQNVYASFADTGSGI-ADEDIENIFNPF 428

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +   +      D   + +  + 
Sbjct: 429 YTTKYSGTGLGLAISHNIIAMHGGTIAVTRSKDGGSIFTVSIP 471


>gi|297158052|gb|ADI07764.1| two-component system sensor kinase [Streptomyces bingchenggensis
           BCW-1]
          Length = 524

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 17/206 (8%)

Query: 24  HDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           H++ +P+ AI    E+L+E       +    +QL+   +      +    +  R   G  
Sbjct: 271 HELRTPLTAITAVTEVLEEETDALDPMIAPAVQLVVSETRRLNDLVENLMEVTRFDAGTA 330

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133
             V   + + D      D  A    V++    E+  ++R +  ++ + L  +   +L  G
Sbjct: 331 RLVLDDVDVADQVTACIDARAWLDAVELD--AERGIMARLDPRRLDVILANLIGNALKHG 388

Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188
           G  V +SV+   ++ +  ++ +G        P  F +    +      +   +     + 
Sbjct: 389 GSPVRVSVRPEDDDLLIRVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALE 448

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
            AH +   +  +   D   V +  L 
Sbjct: 449 NAHIHGGEITADNHPDGGAVFTLRLP 474


>gi|153004814|ref|YP_001379139.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028387|gb|ABS26155.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. Fw109-5]
          Length = 752

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 75/190 (39%), Gaps = 20/190 (10%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRL-KF 66
            L AL  + + + H+I +P+ AI  +++ LD     G + E ++++          + +F
Sbjct: 479 RLAALGEMSAGLAHEIRNPLAAIKGAVQFLDPSKLPGDDREFLEIVIEEVNRLNGVVTQF 538

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRERA 116
           +      +  +   +   D+  V+E    + +               W       + +  
Sbjct: 539 LDY----SRPLKPALAPTDVNDVLERTFRLLQAEVPQSISVELALAEWLPRVNADAEQLK 594

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++ LNL + A  ++P GG++ +S + +++E  F  + +        +F     G  E   
Sbjct: 595 QVFLNLALNAFQAMPAGGRLVVSTRLTRDELAFWREGSRKADLVEVRFRDSGPGVPEEAR 654

Query: 177 DSHDIQFYYV 186
           D   + FY  
Sbjct: 655 DRIFVPFYTT 664


>gi|86157053|ref|YP_463838.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773564|gb|ABC80401.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 526

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 23/222 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           S  L  L  + + + H++ +P+ ++  S+ELL  +   + +  +L+ +    A       
Sbjct: 301 SERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAAPDGDERRLLDIVLREASRLDELV 360

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAK-I 118
              L+F R A    GSV+    L D  +V   D  AV   V  S          ++ + +
Sbjct: 361 TEFLRFARPAPLRPGSVELSGLLDDALRVFAHDPAAVGLLVARSLDPAPAACDPDQIRQV 420

Query: 119 LLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEK----FTQIVDGNV 172
           + NL   A  +L   RG ++ +S         F++  +G      E              
Sbjct: 421 VWNLLRNAAQALGDGRGARIEVSCGVEDGGAWFAVGDDGPGIPAAELERIFLPFHTTKER 480

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +Q      +   +  R+            +  L 
Sbjct: 481 GTGLGLAVVQ-----RIVDAHGGRVEVRSTPGEGARFTVHLP 517


>gi|240142066|ref|YP_002966576.1| putative sensor histidine kinase [Methylobacterium extorquens AM1]
 gi|240012010|gb|ACS43235.1| putative sensor histidine kinase [Methylobacterium extorquens AM1]
          Length = 485

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 68/173 (39%), Gaps = 14/173 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            L +L  L S + H+I +P+G + N+++ L    +   +    + L+          ++ 
Sbjct: 257 RLASLGRLASGMAHEINNPLGGLFNAIDTLKAHGERPDVRRRSLDLVERGLKGIRDVVRA 316

Query: 67  MRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERA---KILL 120
             +               L D++ +I   I     + ++W    +  ++       +++L
Sbjct: 317 TLVTHRADRDQRELGPEDLNDLQLLIGPEIRRRGLI-LTWDNAVRSPVAVPAVAMRQVVL 375

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           NL + A  + P  G+VT++ + + ++ +  + +             ++ G  E
Sbjct: 376 NLLLNAAQATPADGEVTLTAR-AVDDGLLVVTVEDTGGGMDADGHDLLSGRRE 427


>gi|222054628|ref|YP_002536990.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221563917|gb|ACM19889.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 367

 Score = 38.7 bits (89), Expect = 0.49,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 24/225 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRL 64
           S  L AL  L + + H+I +P+G+I  + E+L +     E     ++++   +      +
Sbjct: 145 SERLSALGELSATLAHEIRNPLGSIKGTTEILKDSFAPGEKKYEFLEILLKEADRLNRVV 204

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERA-- 116
           +      G    V       DI   + + +A          V+V     +I   +     
Sbjct: 205 ENF---LGLASPVRVEQNRCDIMLELRELVAFTTAEALSMEVKVRLEPAEIPPIKGDTEK 261

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP-EKFTQIVD 169
             ++ LNL M A  +   GG+V IS       S+N+ +  L    N      E   +I  
Sbjct: 262 LRQVFLNLLMNALQATGTGGEVVISAVGPLHTSENQPVIELSFADNGQGIDQEMLERIFQ 321

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +   +            + +L 
Sbjct: 322 PFFTTKKGGTGLGLAITQKIVESHGGTIRVTSTKGKGTTFTVILP 366


>gi|78186231|ref|YP_374274.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166133|gb|ABB23231.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 689

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 19/220 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEV-----MQLIRLSSMSAIIR 63
            L A+  L S + H+I +P+ AI    + LD      EDE      ++ +          
Sbjct: 464 KLTAMGELASGVAHEIRNPLNAIGLIAQRLDIEFTPKEDEAEFRHLLRTVVSEVHRLNAI 523

Query: 64  LK-FMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSRERA 116
           ++ F+R A      V   D      D   V+E   A DK V  S +G       + R++ 
Sbjct: 524 IQRFLRFARPPALEVVPTDLAAFAADYRAVLEGE-ASDKGVAFSLSGAPGTVALIDRDQM 582

Query: 117 K-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           + +LLN+   A  +  RGG V++SV       +  +   G     P++  ++ +    + 
Sbjct: 583 QQVLLNIVRNAVEATSRGGAVSVSVSADAGSAVIEVADTGKGT-TPDERHRMFNLYFTTK 641

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D   +       +   +   +          V   L+ +
Sbjct: 642 DDGTGMGLSIASQIVQSHGGTIEVNDRPGGGTVFRILVPQ 681


>gi|323132509|gb|ADX19939.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 554

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 450 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 509

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 510 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547


>gi|325109823|ref|YP_004270891.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970091|gb|ADY60869.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1194

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIRLKFMR 68
           + +A+L     H++ +P+  I + L+LL       EV++L    ++         L   R
Sbjct: 826 EFLAMLA----HELRNPLAPIRSGLDLLRIGEQRPEVLELMNNQLQHLVRLVDDLLDVSR 881

Query: 69  LAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120
           +  G        + L +     ++ V + F + ++ + V        L+ +  ++   + 
Sbjct: 882 ILRGKVELRKEQVELRELITRTVDAVNDQFTSRNQELTVRLPDAACWLNGDSVRLSQVIH 941

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           NL   A    P  GKV+IS++ ++     S++ +G
Sbjct: 942 NLLSNASKYTPPDGKVSISLERTERFLRISVRDSG 976


>gi|126724683|ref|ZP_01740526.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacterales bacterium
           HTCC2150]
 gi|126705847|gb|EBA04937.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacterales bacterium
           HTCC2150]
          Length = 448

 Score = 38.7 bits (89), Expect = 0.50,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 18/139 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMR--LAFGY- 73
           L  R  H+  + +  +  +LE L+      E+++ +   + +A  R ++ +R  LA+   
Sbjct: 221 LSGRFAHEFNNLLTVVSGNLEFLESDLQNPEMLECLSD-AQTATARGVQLVRDLLAYSQR 279

Query: 74  TGSVDSLIGLGD-IEQVIED---------FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           T      I + +    V E+          +  D +  + W        +  +  LLNL 
Sbjct: 280 TRLNPVNIDVNNLAATVCENCLPMLQKGVHLETDLQDDL-WQINADQ--KSTSSALLNLI 336

Query: 124 MVAHASLPRGGKVTISVQD 142
           + AH ++P GG + +S ++
Sbjct: 337 LNAHDAMPEGGNLCVSTKN 355


>gi|197122816|ref|YP_002134767.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172665|gb|ACG73638.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 451

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 12/210 (5%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFG 72
            L+ S+I H++ +P+GAI   +++      + +    ++++          L    L+F 
Sbjct: 229 ELMSSQISHELKNPLGAIKALVQISARGSSDGDTCERLKVVSSEVERMREILDGY-LSFS 287

Query: 73  YTGSVDSLIGLG------DIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNLFMV 125
                     L       ++  V++   A     +            R   + LLNL   
Sbjct: 288 RPLECLQREDLSLGELADEVLSVLQGRAAAAGVGLHRRGDARVEADPRRLKEALLNLVAN 347

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  +  RG +V + V D       +++  G     P    ++      +      +    
Sbjct: 348 AVEASRRGDRVEVLVADHGGTVEVAVRDTGRGM-PPAVVARLGTPFFTTRDQGTGLGVLL 406

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 ++   L      D     +  L +
Sbjct: 407 ARRAFVQHGGTLEYASAPDAGTTATGTLPR 436


>gi|26990257|ref|NP_745682.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24985205|gb|AAN69146.1|AE016548_5 sensory box histidine kinase/response regulator [Pseudomonas putida
           KT2440]
          Length = 553

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 71/179 (39%), Gaps = 15/179 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLKFMRLAFG-YT 74
           I HD  + + +I  +LEL  +  ++  +      ++L R ++  A   ++ + LAF    
Sbjct: 181 IAHDFNNLLASILGALELAGQRLVQQRLADTTQLLELSRHNAQRAAALVQRL-LAFSRQQ 239

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK----ILLNLFMVAH 127
             V   + +  +   + D I+      V +  +        R  A+     LLNL + A 
Sbjct: 240 TLVPQRVDVQQLVAGMHDLISSSTGPYVDYHDQTHAGLWPIRIDAQQLENALLNLCINAR 299

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ++P GG ++I   + + +   + ++     RF     +     +   +    ++ ++ 
Sbjct: 300 DAMPLGGTLSIGCANVEVQGAEARQLGLAAGRFLRIRVEDTGMGMSKAVMQRALEPFFT 358


>gi|298530458|ref|ZP_07017860.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509832|gb|EFI33736.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 765

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTIS 139
           L +  +++   + V+ ++ V    +   +  +     +I++NL   A  ++PRGG + + 
Sbjct: 469 LKEAMKLLGATVPVNIQLNVDIGDDPPMVVADPVWIHQIVMNLCTNALQAMPRGGNIDVG 528

Query: 140 VQDSK 144
           ++ + 
Sbjct: 529 LKGAD 533


>gi|223939798|ref|ZP_03631669.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891574|gb|EEF58064.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 893

 Score = 38.7 bits (89), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 10/130 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS-MSAIIRLKFMRLAFGYTGSV 77
           I HD+ + +  I  S+ LL ++  E E    ++ +  S+   A +  + +  A G  G  
Sbjct: 534 IAHDLNNVLAPILMSIALLKKMHPEPETTEVLETLEGSANRGADMIKQVLSYARGVQGDR 593

Query: 78  ---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLP 131
                   L ++E+++ +      R+Q         L     +  +ILLNL + A  ++P
Sbjct: 594 ITISVARLLEEMEKIMGETFPKSIRIQKRMEPSVACLVGDPTQLHQILLNLCVNARDAMP 653

Query: 132 RGGKVTISVQ 141
            GG + +S +
Sbjct: 654 DGGTLVLSAE 663


>gi|332669312|ref|YP_004452320.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas fimi ATCC 484]
 gi|332338350|gb|AEE44933.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas fimi ATCC 484]
          Length = 331

 Score = 38.7 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 62/201 (30%), Gaps = 22/201 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLA-FGYT 74
           +R+ H++ +P+ AI  ++    +    +E       L+  S+  + +     +LA  G  
Sbjct: 103 ARLDHELKNPVTAIRAAVAGAGDDAGPEERARSLATLVSQSTRLSALVADLRKLAELGTQ 162

Query: 75  GSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDLSRERAK--------ILL 120
              D  + L  + +        +   A   R  V              +         + 
Sbjct: 163 EIEDEDVDLAQVVRDAVEDVCAQADAAGAPRPAVDVALPTAPWPLPHVRGDVDLLYVAVY 222

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A    P G ++ +   D     +  +   G      E    F ++  G     + 
Sbjct: 223 NLLANAVKFSPPGTRIEVRGTDDDGTVLVEVADAGPGIPQDEVGVVFDELARGRDARGLP 282

Query: 178 SHDIQFYYVILLAHENKIRLL 198
              I    V ++A  +   + 
Sbjct: 283 GSGIGLALVRVVAQRHGGDVT 303


>gi|86156725|ref|YP_463510.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773236|gb|ABC80073.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 711

 Score = 38.7 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 16/153 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           LL   I HD  + +  I    ELL E G   DE    IR ++       + + L F   G
Sbjct: 349 LLAGGIAHDFNNLLTGILGYAELLGEPGTAADEAAAGIRQAARRGAALTRQL-LGFARRG 407

Query: 76  SVDS-LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAH 127
                 + L  + + + + +    DKR+ +                +  +++LNL + A 
Sbjct: 408 KYQQVPVDLHALVREVSELLERTLDKRIAIRHQLAAGTAVVRGDPDQLQQVVLNLAVNAR 467

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            ++P GG +T             L   G  AR 
Sbjct: 468 DAMPSGGTLTF------ETAEVELDAEGTRARP 494


>gi|297539308|ref|YP_003675077.1| integral membrane sensor signal transduction histidine kinase
           [Methylotenera sp. 301]
 gi|297258655|gb|ADI30500.1| integral membrane sensor signal transduction histidine kinase
           [Methylotenera sp. 301]
          Length = 437

 Score = 38.7 bits (89), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 7/152 (4%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ + + HDI +P+  +  S+E+L + G       +I+  +    I  +F+    G  G
Sbjct: 231 TLILAGVSHDIRTPLARLRLSVEMLPDEGCGSLKNGMIQDIADMDNIIHQFLDFVKGVEG 290

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-RERA--KILLNLFMVAHASLPR 132
               +I +  + Q + D      R  V        +  +  A  ++L NL      +   
Sbjct: 291 EPTQMIDINTLLQAVHDRQLRAGRDLVVQLAPTYFIPIKPLAMQRLLDNLV---GNAYAY 347

Query: 133 G-GKVTISVQDSKNENIFSLKINGNLARFPEK 163
           G G+  I+ + +    + S+  NG        
Sbjct: 348 GKGQARIAGKVTAEHIVISVFDNGPGIPESHL 379


>gi|224585713|ref|YP_002639512.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470241|gb|ACN48071.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 465

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|241204986|ref|YP_002976082.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858876|gb|ACS56543.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 721

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 13/159 (8%)

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
           D  +Q  R  +      L F R            I L ++   + D +       +S   
Sbjct: 366 DGAIQGARRGAALTQRLLAFAR----QQDLQVKPIDLAELVSGMNDLLRRSVGSSISIET 421

Query: 105 ----TGEKIDLSRERAKI-LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
               T     +   + ++ LLNL + A  ++P GG ++IS+++ +          G    
Sbjct: 422 ILPATLPPALIDANQLELALLNLAVNARDAMPDGGTLSISLREEQVPGDDGALGEGAYLV 481

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198
                     G    T+      F+    L     + L 
Sbjct: 482 L--AVADSGTGMDAETLKKAVDPFFSTKELGKGTGLGLS 518


>gi|296388323|ref|ZP_06877798.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
 gi|313108506|ref|ZP_07794507.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310881009|gb|EFQ39603.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 482

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 283 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 333

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 334 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 388

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  +S++D     +  +  +G     PE+  + +       +     Q Y +
Sbjct: 389 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 444

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 445 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 478


>gi|16762284|ref|NP_457901.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143772|ref|NP_807114.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213580344|ref|ZP_03362170.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213855079|ref|ZP_03383319.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|20140997|sp|Q8Z332|ZRAS_SALTI RecName: Full=Sensor protein zraS
 gi|25512555|pir||AE0931 two-component system sensor protein STY3712 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504588|emb|CAD09471.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139407|gb|AAO70974.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 465

 Score = 38.7 bits (89), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|320451054|ref|YP_004203150.1| signAl transduction histidine kinase containing a receiver domain
           [Thermus scotoductus SA-01]
 gi|320151223|gb|ADW22601.1| signAl transduction histidine kinase containing a receiver domain
           [Thermus scotoductus SA-01]
          Length = 723

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 26/214 (12%)

Query: 24  HDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYT 74
           H+I +P+ ++  +LEL L+  G+ +E  +L+ + +  +  R++        ++RL  G  
Sbjct: 99  HEIKNPLMSVLGALELTLEVEGLPEEAKELLSI-AEKSARRIQDLLNKAREYLRLGQG-V 156

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124
                 + L  +   + + +    R +      ++ L +  A          + +LN+  
Sbjct: 157 RLKSERVDLKALLLQVAEEMRPLARRK--GIALRLILPKREAWVYGDREWLYQAVLNVVN 214

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181
            A    P GG+V + +     +   ++   G      E    F      +    ++   +
Sbjct: 215 NAIKYTPEGGRVAVRLLVGPEQYGIAVSDTGPGIPKEEQERVFEPFYRASTRGEVEGTGL 274

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +   +   +              LL +
Sbjct: 275 GLALVKRVLEAHGGEVRLRSRLGQGSTFLLLLPR 308


>gi|254445702|ref|ZP_05059178.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260010|gb|EDY84318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 571

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 28/171 (16%)

Query: 17  LLCSRICHDIISPIGAIH---NSLEL-LDEVGIEDEVMQLIRLSSMSA----IIRLKFMR 68
           LL + I H+I +P+  I    +SL L  +E    ++  Q+I+             L F  
Sbjct: 354 LLSAEIAHEIRNPLTVIKLLFSSLNLQYEESDPRNKDKQVIKEKFNQLEEIVSKVLSF-- 411

Query: 69  LAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGE-KIDLSRERA--------K 117
                + + + +  L +I++++ D   +   K  Q+    E +  L + R         +
Sbjct: 412 -----SKAPEGIFTLWEIDELVADTCLLVRHKMRQLKIELEHQPALQKLRVNGNKGQLQQ 466

Query: 118 ILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLK-INGNLARFPEKFTQ 166
           +LLNL + A  ++P GG++TIS   +S  +  F++  I    +  PE   +
Sbjct: 467 VLLNLIINASDAMPNGGRLTISTTHESNEKGKFAILYIEDTGSGIPENLVE 517


>gi|190891775|ref|YP_001978317.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190697054|gb|ACE91139.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 577

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + I      A  R + +  +    GS    
Sbjct: 369 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 427

Query: 81  IGLG-DIEQVIEDF-----IAVDKR--VQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
                D+  ++        IAV  +  +++        +S + A +   +LNL + A A+
Sbjct: 428 HPSRVDVASLLRGMADILEIAVGAKCHIKLELDAGLPVVSLDAALLEQSVLNLCLNASAA 487

Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155
           +P GG + I    +++  + S+  NG
Sbjct: 488 MPTGGVIAIGATATRDTLLISVTDNG 513


>gi|78222608|ref|YP_384355.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
 gi|78193863|gb|ABB31630.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
          Length = 547

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 79/218 (36%), Gaps = 23/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGY 73
           L +R+ H+I +P+ AI  S +L+ +     E       ++   +      +    LA+  
Sbjct: 327 LSARMAHEIRNPLAAISGSAQLIAQGDGIPEADRELFAIVLREADRLNGLITDF-LAY-A 384

Query: 74  TGSVD--SLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL----SRERAKILLNLFM 124
             S      + L D+   I   +  D+R   V++    E          +  ++  NLF+
Sbjct: 385 RPSQPEKGPVNLTDLVGEIVSLVTPDRRFEQVRIINRVEPDFTLPIDPDQFRQVFWNLFV 444

Query: 125 VAHASLPRGGKVTISVQ-------DSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTI 176
            A  ++  GG +T+  +       D +  + + + +  + +    E  ++I +    S  
Sbjct: 445 NAAEAMSEGGTITVDAERIDEIRSDGEPRSAYRITVADDGSGMNQETISRIFEPFYTSKA 504

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +  R+  E  +    +    + 
Sbjct: 505 SGTGLGLATVYRIIEAHGGRITVESAEGTGTIFIIFIP 542


>gi|84500414|ref|ZP_00998663.1| sensor histidine kinase [Oceanicola batsensis HTCC2597]
 gi|84391367|gb|EAQ03699.1| sensor histidine kinase [Oceanicola batsensis HTCC2597]
          Length = 413

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 29/222 (13%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK---- 65
           + VA+L     HD+ +P+ A+H  L  LD+  + D+  +L+   R S       +     
Sbjct: 195 EFVAVLG----HDLRNPVAALHAGLRQLDKEPLTDKARKLLPFMRSSVHRMNDLIDNIML 250

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI---DLSRERAK 117
               RL  G   S      L D    + D I     ++ +Q+    ++    D  R  A+
Sbjct: 251 HAKARLGGGIRVSATPDAPLNDAITQVIDEIRAASPEQEIQLDLAFDRPVSCDAPR-VAQ 309

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNV 172
            + NL   A      G  + +    S  E   S+   GN    PE+  + +      G  
Sbjct: 310 AISNLVSNAVRHGTTGAPIAVYGAASGGEITISVANRGN--PVPEEVRRRLFQPFQRGPQ 367

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +  Y    +A  +   +  E  DD     +  L 
Sbjct: 368 PEG-EGLGLGLYIAFSIAAAHGGHVEIE-SDDGLTTFTLKLP 407


>gi|146278457|ref|YP_001168616.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556698|gb|ABP71311.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 670

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 75/200 (37%), Gaps = 21/200 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           L S + HD+ + + AI  S  L+ +   G  +   Q I  ++  A   ++   L+ G   
Sbjct: 288 LASGLAHDLNNLLAAIGGSATLIRDLGPGAAEAHAQRILSATEQAGALVRRF-LSLGQRQ 346

Query: 76  SVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128
           S  S I     L +   ++   +    R+ ++   E + +     +  +++LNL + A  
Sbjct: 347 SNRSRIDLRALLHEAADLVRAGLRNRTRLTLALPPEPVWVEADPTDILQVVLNLVINARD 406

Query: 129 SL----PR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDS 178
           ++    PR  G ++T+++  + +    +           + +  +        +     +
Sbjct: 407 AIATAPPRETGYEITLAL-GAPDPAQLAGPFAAGAPGAGQGYVALTVSDNGPGIAPETQA 465

Query: 179 HDIQFYYVILLAHENKIRLL 198
              Q Y+    A    + L 
Sbjct: 466 RVFQPYFSTKGAAGTGLGLA 485


>gi|323699810|ref|ZP_08111722.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459742|gb|EGB15607.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 729

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSAIIR 63
            L A   +  RI H+I +P+  I  S + L          G  DE   LI         R
Sbjct: 510 RLAAWREVARRIAHEIKNPLTPIKLSAQRLQRKYGGRIGEGTFDECTGLIVNQVE----R 565

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDL---SRER- 115
           L+ M   F     +  +    D+     + +    A   R ++ W     D+     +R 
Sbjct: 566 LQNMVTEFSAYAKLPEVQPKPDLLVPLLEEVTAMFANTHR-RIKWNLSASDIGEFPFDRE 624

Query: 116 --AKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              K+L+NLF  A  +L   RGG+V I+    ++    ++ +  N    P
Sbjct: 625 GIRKVLINLFTNAAEALKDTRGGEVRITAVHDRDAGTVTISVADNGPGLP 674


>gi|187251604|ref|YP_001876086.1| integral membrane sensor signal transduction histidine kinase
           [Elusimicrobium minutum Pei191]
 gi|186971764|gb|ACC98749.1| Integral membrane sensor signal transduction histidine kinase
           [Elusimicrobium minutum Pei191]
          Length = 604

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 18/147 (12%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65
            L A+  + S I H+I +P+  I NS  L+     +E         +I      A   ++
Sbjct: 389 RLAAIGEMASIISHEIRNPLAVISNSTHLIRAIVGEENPKLKRQFDIIDSEVRQANRIVE 448

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------K 117
                 GY       I   D+   ++D +      Q     +  D +            +
Sbjct: 449 ---EVLGYARDRKQNITRVDLNSYLKDIVTTHPLPQGIRIVQNYDETHPAVNIDSEEIKQ 505

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK 144
            + NL   A   +P GG + I  +  K
Sbjct: 506 AVRNLITNAFDVMPDGGTLNIGTKAGK 532


>gi|6467531|gb|AAF13178.1|AF181079_1 sensor kinase homolog [Rhodobacter capsulatus]
          Length = 419

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 51  HDFNNLLTAISGHCDLLMLRHDKGDPDYTDLDQISQNANRAASLVGQLLAFSR----KQT 106

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
               +I L D    +   +     ++V ++ T +          R+  ++++NL + A  
Sbjct: 107 LKPRIIDLRDTLSDLTHLLNRLTGEKVVLTLTHDPNLAPIRADKRQLEQVIMNLVVNARD 166

Query: 129 SLPRGGKVTISVQD 142
           ++P GG++ I  ++
Sbjct: 167 AMPGGGEIRIETEN 180


>gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 930

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 68/159 (42%), Gaps = 20/159 (12%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSMSAI----IRL 64
           + +A+L     H++ +P+  I  +  LL    ++ E +    ++I   +          L
Sbjct: 559 EFLAMLA----HELRNPLAPIATAAHLLSTGTLDPEGLSRLSEVISRQAGHMTRLIDDLL 614

Query: 65  KFMRLAFGYTGSVDSLIGLG----DIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKIL 119
              R+ +G      + + +     +  + +   + A  + + +  + ++  +S +R +++
Sbjct: 615 DVSRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLV 674

Query: 120 LNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKING 155
             L  V + ++   P GG++T+ V +  +     ++ NG
Sbjct: 675 QVLANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNG 713


>gi|90423035|ref|YP_531405.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90105049|gb|ABD87086.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 853

 Score = 38.7 bits (89), Expect = 0.54,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 71/183 (38%), Gaps = 18/183 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           MD+V  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 468 MDMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 527

Query: 69  LAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKI 118
           LAF    ++   +      L D+  ++   I    ++ +      W  +      E+   
Sbjct: 528 LAFSRRQTLRPQVLHLGDALSDLTMLLRRLIGEKVKLDLVHGRDLWPVKVDVSQFEQV-- 585

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           ++NL + A  ++P GGK+T+   +   +    L   G     P  + +I   +  + I +
Sbjct: 586 IVNLAVNARDAMPAGGKLTVRTANVSAQEAERLSYKGM---PPADYVRIDVSDTGTGIPA 642

Query: 179 HDI 181
             +
Sbjct: 643 EIV 645


>gi|288959502|ref|YP_003449843.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911810|dbj|BAI73299.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 459

 Score = 38.7 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 10/150 (6%)

Query: 6   CFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            FN     L   +  R      I HD+ +PI  +    EL+++  ++  ++  +      
Sbjct: 235 AFNRMQARLARFVADRTQMLAAISHDLRTPITRLRLRAELVEDPEMQRRMLADLDEMEAM 294

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
               L F R              L D ++ + +D +        +     +   R    +
Sbjct: 295 ISATLAFARD--DAQREPRGRFDLADLLQSLCDDRVDAGHHALYAGPPHAVAEGRP-VAL 351

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI 148
              L  +   ++  GG  T+ +    +   
Sbjct: 352 RRALANLMDNAIKYGGGFTVRLDREADAIG 381


>gi|194471314|ref|ZP_03077298.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358832|ref|ZP_02659463.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194457678|gb|EDX46517.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331651|gb|EDZ18415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 465

 Score = 38.7 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 710

 Score = 38.7 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 69/173 (39%), Gaps = 25/173 (14%)

Query: 20  SRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIRL----KFM 67
           +++ H++ +P+  +   L+LL        +    + E +Q +  S  +   R+    +  
Sbjct: 478 AKVSHELRNPLHTLQGFLKLLINESNKVGNLNERQTEALQEVENSVNTLKKRIVDLIELN 537

Query: 68  RLAFGYTGSVDSLIGLGDI---------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAK- 117
           RL  G            DI          + +E    V+  + +     ++ +  +R + 
Sbjct: 538 RLERGQFTINPVRTNPIDIIVTTCSQQRSKALES--EVELIIDIPDQLPQVIVDEDRIRQ 595

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +L NL   A  + PRGGK+ +S +  +++ +  +   G      E + +I D 
Sbjct: 596 VLTNLIENAMKATPRGGKIVVSAEQQQDQILIHVTDTGKGI-ASELWEKIFDP 647


>gi|119383347|ref|YP_914403.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans
           PD1222]
 gi|119373114|gb|ABL68707.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans
           PD1222]
          Length = 680

 Score = 38.7 bits (89), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           I HD  + + AI    +LL    D+   +   +  I  ++  A   ++ + LAF    ++
Sbjct: 313 IAHDFNNLLTAITGHCDLLMLRHDKADPDYADLDQISQNANRAAALVRQL-LAFSRKQTL 371

Query: 78  D-SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129
              ++ L D    +   +     +R+ +++  +          R+  ++++NL + A  +
Sbjct: 372 KLQIMDLRDTLSELTHLLNRLVGERIVLTFDHDPALRMVHADRRQLEQVIMNLVVNARDA 431

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +P GG +TI      +      +     A  P  
Sbjct: 432 MPEGGDITIC----TDNVRLETRAELGRAVLPAG 461


>gi|267996474|gb|ACY91359.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
          Length = 493

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 389 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 448

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 449 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 486


>gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 377

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 28/167 (16%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA----IIRLKFMRL 69
           S + H++ +P+  I++ +E+ ++        ++ E +QLIR  + +        L  +R+
Sbjct: 153 SMVSHELRTPLTVINSYIEMFEDGMLGDLTDVQKEKLQLIRSQTDTMIQLVNDMLDILRI 212

Query: 70  AFGYTGSVDSLI--GLGDIEQVIEDFIAVDKRV------QVSWTGEKIDL-----SRERA 116
                GS    +   L  +E++I   IA   R+       +++  E+ +       ++  
Sbjct: 213 -----GSRRLRLKKELSSMEELIRSVIASLSRLAALKEHTITFRCERANTLIECDPKKIM 267

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           ++L NL   A    P  G++ + +       + S++ NG   R  +K
Sbjct: 268 QVLSNLLTNAIKYTPDRGQIEVVLGGDAENVLVSIRDNGIGIREEDK 314


>gi|186680835|ref|YP_001864031.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186463287|gb|ACC79088.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 367

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVE 173
           ++  NL        PRGGKV + ++   ++ +  +   G+       P  F +   G+ +
Sbjct: 260 RVFTNLLSNGINHTPRGGKVEVVLEGYSSDQVVKILDTGSGFTEEELPHLFERFYQGHSD 319

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +  Y    +   +   +  E       +    L 
Sbjct: 320 RHVSGSGLGLYLTRQIIAAHGGTIWAENRSPRGAMFGFRLP 360


>gi|304393874|ref|ZP_07375799.1| integral membrane sensor signal transduction histidine kinase
           [Ahrensia sp. R2A130]
 gi|303294073|gb|EFL88448.1| integral membrane sensor signal transduction histidine kinase
           [Ahrensia sp. R2A130]
          Length = 447

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 68/203 (33%), Gaps = 19/203 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           HD+ +PI ++    E+LD+  + D ++  +    + A   L + R      G  +  + +
Sbjct: 251 HDLRTPITSLRIRAEMLDDDALRDPMISTLDDMRVMADGLLGWGR----SGGEREDSVDV 306

Query: 84  GDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
            D+  ++ D    +     VS   + I +      +   +  +   +L  GG   + V  
Sbjct: 307 -DLTALVRDLATSNGNASAVSIQLDDITVRGRPVALRRAIGNLVDNALRHGGSAEVVVAQ 365

Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY-----------YVILLAH 191
             N  + S+  NG     P+   + V         +   Q                 +  
Sbjct: 366 DNNRAVVSVSDNGPG--LPDDMLEAVFEPFIRGDVARSPQEAGEDGGTGLGLSIARTIVR 423

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +   L+ E  +   ++    L 
Sbjct: 424 AHGGTLVLENRESGGLIARIELP 446


>gi|167724407|ref|ZP_02407643.1| sensory box sensor histidine kinase [Burkholderia pseudomallei
           DM98]
 gi|167898977|ref|ZP_02486378.1| sensory box sensor histidine kinase [Burkholderia pseudomallei
           7894]
          Length = 245

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 49  DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 105

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 106 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 165

Query: 149 FSLKING 155
            +++  G
Sbjct: 166 IAIEDTG 172


>gi|108763090|ref|YP_633515.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus
           DK 1622]
 gi|15076966|gb|AAK82997.1|AF285783_2 histidine kinase HsfB [Myxococcus xanthus]
 gi|108466970|gb|ABF92155.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus
           DK 1622]
          Length = 527

 Score = 38.7 bits (89), Expect = 0.56,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 60/212 (28%), Gaps = 26/212 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSS----MSAIIRLKFMRLAFGYTG 75
           H+I +P+G I    +L+       +     + LI  S+          LKF R       
Sbjct: 312 HEINNPLGGILAFAQLMSRDAGRSDADLESLGLIEESALRCKRIVESLLKFSRH---SRV 368

Query: 76  SVDSLIGLG----DIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126
                  L     D   +    +     V+++               + A+++LNL    
Sbjct: 369 EDRRPFDLSKCVEDAAVLFRAQLKSMPTVELTLGLADGLPKVYGDPGQLAQVVLNLLQNG 428

Query: 127 HASLP-RGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQ 182
             SLP R GK+ +      +   F++   G        P  F                + 
Sbjct: 429 LQSLPTREGKLKLVTGREGDRCFFAVTDTGTGIEEKHLPRIFEPSFTTKAPGEGTGLGLS 488

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Y   +  ++      +         +  L 
Sbjct: 489 IAY--RIVQDHGGSFHVDTEVGEGSCFTVFLP 518


>gi|327538937|gb|EGF25575.1| protein containing ATP-binding region, ATPase-like domain
           [Rhodopirellula baltica WH47]
          Length = 468

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 33/174 (18%)

Query: 24  HDIISPIGAIHNSLELLDEVGIED----------EVM-------QLIRLSSMSAIIRL-- 64
           HD+ SP+  I  ++E++ +  + D            M        LI   S +  +R   
Sbjct: 20  HDLKSPLAGIAATMEVIRDGSLGDVTPSQAEFLQAAMTQCEYIDSLIGELSRAERLRSGT 79

Query: 65  -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117
            +  R+A            + D   +    +  +K++ + W G + +            +
Sbjct: 80  PRVRRVA-------TKRTAIRDAVDLSTRSLLSNKQIDLHWDGAEPNSIDTLVDSTILSR 132

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +L NL + A  +   G  + I V+D  N  +    +         +  Q + G 
Sbjct: 133 LLTNLIINAERASKSGSPILIRVEDDLNRGVAVWSVIDRGRGISPQRLQQLSGT 186


>gi|153004403|ref|YP_001378728.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027976|gb|ABS25744.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 394

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 22/209 (10%)

Query: 24  HDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS---SMSAIIRLKFMRLAFGYTGS 76
           HD+ +P+GA+     L     D+  +   + +++R +   +      L   R+  G    
Sbjct: 158 HDLRNPLGAVVAGATLALRRSDDPKVRGHLERVLRSARRMARMVEQLLDVSRVRLG--RG 215

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------AKILLNLFM-VAH 127
           +  +    D+ +++    A  +        E     R          A++L NL      
Sbjct: 216 IPIVRDASDLCELVRQAAAETEPTHRQHRFELRLPPRCEGEWDRDRLAQVLTNLLANACE 275

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH--DIQFYY 185
            S P G  VT++++D     + ++   G     PE    + D     + D     +  Y 
Sbjct: 276 HSEP-GSVVTVALEDGPERAMVTVHNPGPPI-PPELLPSVFDAFASGSEDGRGLGLGLYI 333

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   +  +  D      S  L 
Sbjct: 334 AREIALAHGGDISVDSADGRGTTFSVTLP 362


>gi|86158415|ref|YP_465200.1| signal transduction histidine kinase NtrB [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774926|gb|ABC81763.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 457

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 78/225 (34%), Gaps = 20/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQ-LIRLSSM 58
           + +    A+  + + + H+I +P+  +  +LELL E    D         MQ  +R  + 
Sbjct: 224 VRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSADARHSDIVTEMQHQVRRLTH 283

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SR 113
           +    L F R A     S D    L  +  +I    + D  +++                
Sbjct: 284 TMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQ-SRDGTIELVPELSPGLPAVLADPS 342

Query: 114 ERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +  ++ LN+ + A  ++    RGG +T+  +         ++  G      +   QI   
Sbjct: 343 QLEQVFLNICLNACQAMIATRRGGVLTVRSRVGDGTVSVEVEDTGPGI-PADLRAQIFKP 401

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  + + +       +  E+   +      +     +  L++
Sbjct: 402 FFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQQ 446


>gi|328543954|ref|YP_004304063.1| phosphate/phosphonate ABC transporter [polymorphum gilvum
           SL003B-26A1]
 gi|326413698|gb|ADZ70761.1| Phosphate/phosphonate ABC transporter [Polymorphum gilvum
           SL003B-26A1]
          Length = 759

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 79/214 (36%), Gaps = 19/214 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            L +L  L S + H+I +P+G +  +++ L    ++  + +  + L++         +  
Sbjct: 535 KLASLGRLSSVMAHEINNPLGGLLTAVDTLRAHGEKPDVRNASLDLLQRGLEGIAGVVHA 594

Query: 67  MRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAKIL 119
               +         +     D + ++   +    +     + +         S    +  
Sbjct: 595 ALATYRPERHSRPIARSDFEDAKVLLMPELRRRGQHLDCQIALPDGMSCACPSGPIRQAT 654

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DS 178
           +NL + A A+ P GG V ++V   +   +  ++  G     P    +I+ G  + ++   
Sbjct: 655 INLLLNASAATPDGGVVGMTVALERGRLVVEVRDQGGG--LPRHARRILVGEPDGSLPTG 712

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +  + V  +A E    +    I D   V SA+
Sbjct: 713 SGLGLWIVRQIADEIGAAIE---IADREPVGSAV 743


>gi|163795227|ref|ZP_02189195.1| two-component hybrid sensor and regulator [alpha proteobacterium
           BAL199]
 gi|159179625|gb|EDP64154.1| two-component hybrid sensor and regulator [alpha proteobacterium
           BAL199]
          Length = 517

 Score = 38.7 bits (89), Expect = 0.57,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + +G I  SL+LL E        Q +   +++A +R        L F R     
Sbjct: 155 IAHDFNNLLGVIIGSLDLLTETDGLARSHQELVDVALNAALRGSKLTKQLLAFAR----R 210

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSR-----ERAKILLNLFMVA 126
                    + +      D +     +RV VS               +    L+NL + A
Sbjct: 211 QSLDPEEFDVNERVAQTLDLLRRTLGERVVVSTVLSPELAPAFADASQFDSALVNLAINA 270

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDSHDIQ 182
             ++P GG++ I   + + ++ +    + N+   P ++  +        +   + +   +
Sbjct: 271 RDAMPSGGRLVIETANQQLDDGY---ASSNVDVTPGRYVMLAVTDTGTGMPPEVAARAFE 327

Query: 183 FYYV 186
            ++ 
Sbjct: 328 PFFT 331


>gi|297568592|ref|YP_003689936.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924507|gb|ADH85317.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 601

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 24/222 (10%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS-------MSAII 62
            LVAL  + + + H+I +P+ +I     LL    G      +  RL          S   
Sbjct: 382 RLVALGKMAAGVAHEIRNPLSSIKGLATLLASRAGQNPPESETARLLVGEVERVNRSISE 441

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERA--- 116
            L F R            + L  +       +A D +   V++       +         
Sbjct: 442 LLDFAR----PQPLNRRPVDLPTLLGNSLQLVAADAQSLGVELKLQPPATEFPPVPVDAD 497

Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNV 172
              ++LLNL++ +  ++P GG++  +++    + +  +K++       PE   +I D   
Sbjct: 498 RLTQVLLNLYLNSLQAMPTGGRLEANLEYRPEQQVVRIKVSDTGQGIAPEILPRITDPYF 557

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +   +    V  +  ++  ++      D    ++  L 
Sbjct: 558 TTKPEGSGLGLALVQKIIDDHGGKMEFTSQPDQGTTVTITLP 599


>gi|39995579|ref|NP_951530.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982342|gb|AAR33803.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 419

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 13/214 (6%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIR 63
            L  L  + + + H++ +P+  I    +LL E   +DE  +   L    A          
Sbjct: 204 RLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVTEAIRLESLVSDL 263

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120
           L + R   G  G +     +  +  +++           +   E +      A++   +L
Sbjct: 264 LAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLATRGNEARLEQLIL 323

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL      ++P GG +T+  +        S+  +G+    P    +I      +      
Sbjct: 324 NLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGI-APHDRERIFTPFFTTKARGSG 382

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +A  +   +          V    L 
Sbjct: 383 LGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 416


>gi|91976673|ref|YP_569332.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisB5]
 gi|91683129|gb|ABE39431.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 705

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLFMVAHASLPRG 133
           + LGD      D +    R  ++   +  D          E    LLNL + A  ++P G
Sbjct: 409 VDLGDSVTKFADVLRQSVRSDIAIEIDPPDEPIIVQIDPNEFEIALLNLALNARDAMPDG 468

Query: 134 GKVTISVQDSKNENIFSLKINGNLARF 160
           G++TIS++    +N    ++ G+ A  
Sbjct: 469 GRITISIRTETLKNFGPRRLTGDYAVL 495


>gi|220904042|ref|YP_002479354.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868341|gb|ACL48676.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 673

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 25/222 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEV-----MQLIRLSSMSAI 61
            L AL  L + + H++ +P+  I   + L        G  +E      +  +        
Sbjct: 446 RLSALGHLAAGVAHEVRNPLSTIK-GVALYIAKRMLPGGREEEAAQRMIDEVDRLDRVVS 504

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDLS-----R 113
             L+F R   G   + ++   L ++          D R +   V                
Sbjct: 505 ELLEFARP--GAINTAEA--DLAEVIGRALRLAEADMRSRHIHVVLDVPPGLPPVRVNTE 560

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGNV 172
              + LLNLF+ A  ++  GG++ +  +       F + +  N           I     
Sbjct: 561 RLTQALLNLFLNAAQAMGEGGELRVGARLCSGGQTFCITVADNGPGIARDIQAAIFTPYF 620

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +   +   +            +  L 
Sbjct: 621 TTKPSGTGLGLAIVHQIVEGHGGNVSVTSAPGRGTEFTLELP 662


>gi|116494458|ref|YP_806192.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|116104608|gb|ABJ69750.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
          Length = 336

 Score = 38.7 bits (89), Expect = 0.58,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 65/206 (31%), Gaps = 32/206 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I H + +P+ A +N LE++     E    +L+   +  A +  + + LA          +
Sbjct: 132 IAHQLRTPLAANNNLLEMMTAANWEVTRQELLAQHTRQAELVEQLILLA---------KV 182

Query: 82  GLGDIEQVIEDF---------------IAVDKRVQVSWTGEKIDL----SRERAKILLNL 122
               + Q  +D                +  D ++ + W      +         + L+N+
Sbjct: 183 DTHTLSQTRQDVSVAALGKEALKPLLRMVADNQLTIDWQVSPDLMLHVNPALVKEALVNV 242

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSH 179
              A      GG++ I            +   G     A  P  F +   G   +  ++ 
Sbjct: 243 LKNAVEHTAFGGQIQIIGIADPIRVRLKIINTGSPIAEADMPHLFERFFRGQYATA-NNV 301

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDH 205
            I       +  EN  RL  E   + 
Sbjct: 302 GIGLAIAAGITRENDGRLSAENTAEG 327


>gi|194446308|ref|YP_002043421.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197263097|ref|ZP_03163171.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|194404971|gb|ACF65193.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197241352|gb|EDY23972.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 465

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|259415800|ref|ZP_05739720.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
 gi|259347239|gb|EEW59016.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
          Length = 442

 Score = 38.7 bits (89), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ S + HD+ +P+  +  SL +L++   E   +Q ++         L F R   G T 
Sbjct: 239 TLMLSGVSHDLRTPLTRLKLSLSMLEDDDAEPM-LQDVKEMEDMVNAFLDFSR---GVTT 294

Query: 76  SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
           S          +E+ ++++    K V +  T     +    A +   L  +   ++  G 
Sbjct: 295 SAMEETDPCALVEEAVDNWTRQGKTVHLVETVGNRTVPLRAAAVRRALDNLISNAVRYGT 354

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---------FYY 185
           +  +SV  +  +    +++  +    PE           + +D    Q            
Sbjct: 355 RARVSV--AVMQKSLRIRVEDDGPGIPEDLRG-DAMRPFTRLDPARNQDLGTGVGLGLAI 411

Query: 186 VILLAHENKIRLLPEIIDD 204
           V  +A  +   L     ++
Sbjct: 412 VADIARAHGGTLRLGTSEE 430


>gi|207859351|ref|YP_002246002.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711154|emb|CAR35528.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 465

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|218781351|ref|YP_002432669.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762735|gb|ACL05201.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1011

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 19/122 (15%)

Query: 64  LKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----A 116
           L F R      G         L ++ +    F+    +V+  ++  +  +  E       
Sbjct: 705 LTFAR------GGAPVKESASLAELLKECVGFVLSGSKVRCEYSVPEDLMPAEVDASQIR 758

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +++ NL + A  ++P+GG + IS Q+ +      ++   NL   P ++ ++   +    I
Sbjct: 759 QVIQNLVINATQAMPQGGILYISAQNVE------VEEKDNLPLPPGQYVEMSIRDQGEGI 812

Query: 177 DS 178
             
Sbjct: 813 PP 814


>gi|305432053|ref|ZP_07401220.1| sensor histidine kinase [Campylobacter coli JV20]
 gi|304445137|gb|EFM37783.1| sensor histidine kinase [Campylobacter coli JV20]
          Length = 427

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA 60
            +L +  L +++ + I H++ +P+  I  SLE+L +  ++DE +  +L+   S  +
Sbjct: 218 ISLKNTQLASVISA-ISHELKNPLSVIDLSLEMLKDENLKDEKLKNELLEKISRQS 272


>gi|298504597|gb|ADI83320.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 411

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 13/214 (6%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIR 63
            L  L  + + + H++ +P+  I    +LL E   +DE  +   L    A          
Sbjct: 196 RLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVTEAIRLESLVSDL 255

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120
           L + R   G  G +     +  +  +++           +   E +      A++   +L
Sbjct: 256 LAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLATRGNEARLEQLIL 315

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL      ++P GG +T+  +        S+  +G+    P    +I      +      
Sbjct: 316 NLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGI-APHDRERIFTPFFTTKARGSG 374

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +A  +   +          V    L 
Sbjct: 375 LGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 408


>gi|238913751|ref|ZP_04657588.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 465

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|296120700|ref|YP_003628478.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296013040|gb|ADG66279.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 568

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIR----LK 65
              + S +CH+  +P+ +I    ELL +  I++   Q      I              L 
Sbjct: 329 AEFVSS-VCHEFKTPMSSIKAYAELLRDGEIDEAEEQQKILVFIDEQVDRLSRLVDNMLN 387

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRE-----RAK 117
             R+  G        + +  + +   D +          V      + +         ++
Sbjct: 388 LARIESGVIRVQRKDVEINRLLKSALDVVTPQAAAKSQTVESLLSDLYIPAHVDEDLFSQ 447

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVES 174
            ++NL   A    P GGK+++  +  ++  +  ++  G     A  P  F +     V  
Sbjct: 448 AVVNLLSNAVKYTPAGGKISLKSRLEEDRVLIEVRDTGMGIPAASLPRLFERFY--RVPE 505

Query: 175 TIDSHD 180
            + +  
Sbjct: 506 NMKAAA 511


>gi|149173454|ref|ZP_01852084.1| sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148847636|gb|EDL61969.1| sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 480

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 68/181 (37%), Gaps = 25/181 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL + I H++ +P+  I + ++LL+    ++   + +           + +R    ++  
Sbjct: 249 LLAAGIAHEVGNPLAGISSLVQLLNRHNNDEYTNKRLDEVDAQLRRIQRILRELIDFSRP 308

Query: 77  VDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRER-AKILLNLFMV 125
             +      I ++I + + + K            + +     + + R++  ++ LNL + 
Sbjct: 309 ATTERNRCQINELITESLNISKYYKRKKGKNIITRFAEDLPVVQVVRDQLVQVFLNLILN 368

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  +   G  + I+ +    + + S+  +G   R  +K              +   Q Y+
Sbjct: 369 AMDATEEGESIEITTEARGGQIVISIHDDGEGIREEDK--------------ARLFQPYF 414

Query: 186 V 186
            
Sbjct: 415 T 415


>gi|57167921|ref|ZP_00367061.1| histidine protein kinase PhoR VC0720 , putative [Campylobacter coli
           RM2228]
 gi|57021043|gb|EAL57707.1| histidine protein kinase PhoR VC0720 , putative [Campylobacter coli
           RM2228]
          Length = 427

 Score = 38.7 bits (89), Expect = 0.60,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA 60
            +L +  L +++ + I H++ +P+  I  SLE+L +  ++DE +  +L+   S  +
Sbjct: 218 ISLKNTQLASVISA-ISHELKNPLSVIDLSLEMLKDENLKDEKLKNELLEKISRQS 272


>gi|218890617|ref|YP_002439481.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218770840|emb|CAW26605.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 473

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 325 --DTDIHENVESVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  +S++D     +  +  +G     PE+  + +       +     Q Y +
Sbjct: 380 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469


>gi|205354425|ref|YP_002228226.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274206|emb|CAR39224.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
          Length = 463

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 359 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 418

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 456


>gi|15598387|ref|NP_251881.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9949310|gb|AAG06579.1|AE004743_2 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 473

 Score = 38.7 bits (89), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 325 --DTDIHENVESVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  +S++D     +  +  +G     PE+  + +       +     Q Y +
Sbjct: 380 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469


>gi|330874339|gb|EGH08488.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 430

 Score = 38.3 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 228 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 278

Query: 72  GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +++        +  D RV      +     +  A  + + NL 
Sbjct: 279 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 336

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D+    +  +   G     PE+  + V       +  +  Q 
Sbjct: 337 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 390

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + +  + ++  L +
Sbjct: 391 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 427


>gi|83814249|ref|YP_446168.1| sensory box sensor histidine kianse/response regulator
           [Salinibacter ruber DSM 13855]
 gi|83755643|gb|ABC43756.1| sensory box sensor histidine kianse/response regulator
           [Salinibacter ruber DSM 13855]
          Length = 905

 Score = 38.3 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIE-DEVMQLIRLSSMSAIIR----LKFMRLAFG 72
           I HD+ + +  I   +++L    D+   + D+ + +I+ S+          L F R   G
Sbjct: 533 IAHDLGNLLVPITLGVKVLKRRVDDTDDKVDQTLSMIQKSAERGSDMVEQVLAFARGVEG 592

Query: 73  Y-TGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                   LI     E   E F   + V  R          D ++ + ++L+NL + A  
Sbjct: 593 ERVALQPELIVEEVEEMTTETFPEDVEVHIRTDADLRPVVGDATQIQ-QVLMNLCVNARD 651

Query: 129 SLPRGGKVTISVQD 142
           ++P GG +T+  ++
Sbjct: 652 AMPDGGTLTVEARN 665


>gi|148264720|ref|YP_001231426.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146398220|gb|ABQ26853.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 544

 Score = 38.3 bits (88), Expect = 0.61,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR 63
            +  L A+  L +RI H+I +P+ ++  S++L+ + G     + +++ +++  +      
Sbjct: 318 KADRLAAIGELSARIAHEIRNPLASVSGSVQLIAQGGGIAAGDKKLLDIVQRETERLNAL 377

Query: 64  LKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKID---LSRERA 116
           +    LA+      V   + L      +   +A D   +RV++           + R++ 
Sbjct: 378 ITDF-LAYARPRRPVKVTMNLKGFMGNLVALLATDSRFERVKILNDCPDDLSVEVDRDQF 436

Query: 117 KILL-NLFMVAHASLPRGGKVTISVQ---------DSKNENIFSLKINGNLARFPE 162
           + +  NL M A  ++P GG V+I                E   ++  NG      +
Sbjct: 437 QQVFWNLLMNAAEAMPAGGTVSIKASAAHKRRHLKGPGGEVRIAVTDNGAGMVPED 492


>gi|254236152|ref|ZP_04929475.1| hypothetical protein PACG_02117 [Pseudomonas aeruginosa C3719]
 gi|126168083|gb|EAZ53594.1| hypothetical protein PACG_02117 [Pseudomonas aeruginosa C3719]
          Length = 473

 Score = 38.3 bits (88), Expect = 0.62,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 81/214 (37%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 325 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  +S++D        +  +G     PE+  + +       +     Q Y +
Sbjct: 380 DNALKYGERARLSLEDGPEAVALHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469


>gi|326318057|ref|YP_004235729.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374893|gb|ADX47162.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1026

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 71/205 (34%), Gaps = 19/205 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR----LSSMSAIIRLKFMRLAFGY 73
           + H++ +P+ AI  + ++L       E     + +I+      +      L   R+  G 
Sbjct: 678 LSHELRNPLAAIAAASDVLSTGAGGPETTHQALGIIQRQTQHLASMMRDLLDVSRVLRGS 737

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
                    L +  + + + ++V     R   ++  +   ++ +  +I   ++NL   A 
Sbjct: 738 AVLARRPTDLAERVRSVRESLSVGGTMRRHTWTFDLQPAWINGDATRIEQVIVNLLQNAI 797

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQ 182
              P G  + +SV    +E +  +   G+       P  F     G   ++       + 
Sbjct: 798 KYTPEGRSIDVSVSCPGDEAVLRVADGGDGIDEDLLPHIFDLFRQGERMLDRQDGGLGVG 857

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
              V  L  ++   +     +D  V
Sbjct: 858 LTLVQHLVEQHGGVIDVATSEDGTV 882


>gi|218886355|ref|YP_002435676.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757309|gb|ACL08208.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 505

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAII----RLKFMR- 68
           L S + H+I +P+G +      L   G++++      ++I              + + R 
Sbjct: 273 LASGVAHEINNPLGGVILCFRNLTAGGMDEDARRQHEKVIDDGLEKIRRIVGELMHYARP 332

Query: 69  --LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILLNLFMV 125
             LA   T   D       + +       V     V+     + +   +  +++LNL + 
Sbjct: 333 SPLAVSETRIEDLFASSRALVEFTLQRKGVALVSHVAQDVPPLFIDPDKMGQVILNLVLN 392

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              ++P GG +T+  +  +NE   ++   G     PE   +I D 
Sbjct: 393 GADAMPAGGTLTLDARIVENEVRITVSDTGPGV-APEHRERIFDP 436


>gi|116051180|ref|YP_789989.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586401|gb|ABJ12416.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 473

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 82/214 (38%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 324

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 325 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 379

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  +S++D     +  +  +G     PE+  + +       +     Q Y +
Sbjct: 380 DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 435

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 436 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469


>gi|301062897|ref|ZP_07203480.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300443014|gb|EFK07196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 524

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 66/167 (39%), Gaps = 22/167 (13%)

Query: 18  LCSRICHDIISPIGAIHNS----LE---LLDEVGIEDEVMQLIRL---SSMSAIIRLKFM 67
           L S I H++ +P+  I  +    LE    L +   ++    ++     S       L F 
Sbjct: 299 LTSGIAHELNNPLNNITLTAHMLLEDYQSLSDDERKEMAEDIVGEAKRSKHIISNLLDFA 358

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL-----SRERAKIL 119
           R     +GS    + L ++ +   +  A   +   +++ +            S++  ++ 
Sbjct: 359 R----ESGSQLEPLDLKELLRDTINLAANQIKLSGIRIDFQATDNLPRIHGDSQQLRQVF 414

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           LNL + A  +  +G ++ + V  + + N  ++K+  + +  P+    
Sbjct: 415 LNLILNAIDASKKGDRIQVMVLPADDPNYVAVKVIDSGSGIPDHILG 461


>gi|294508093|ref|YP_003572151.1| sensory box sensor histidine kianse/respons regulator [Salinibacter
           ruber M8]
 gi|294344421|emb|CBH25199.1| sensory box sensor histidine kianse/respons regulator [Salinibacter
           ruber M8]
          Length = 941

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIE-DEVMQLIRLSSMSAIIR----LKFMRLAFG 72
           I HD+ + +  I   +++L    D+   + D+ + +I+ S+          L F R   G
Sbjct: 569 IAHDLGNLLVPITLGVKVLKRRVDDTDDKVDQTLSMIQKSAERGSDMVEQVLAFARGVEG 628

Query: 73  Y-TGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                   LI     E   E F   + V  R          D ++ + ++L+NL + A  
Sbjct: 629 ERVALQPELIVEEVEEMTTETFPEDVEVHIRTDADLRPVVGDATQIQ-QVLMNLCVNARD 687

Query: 129 SLPRGGKVTISVQD 142
           ++P GG +T+  ++
Sbjct: 688 AMPDGGTLTVEARN 701


>gi|99081320|ref|YP_613474.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
 gi|99037600|gb|ABF64212.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
          Length = 442

 Score = 38.3 bits (88), Expect = 0.63,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 17/199 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ S + HD+ +P+  +  SL +LD+   E   +Q ++         L F R   G T 
Sbjct: 239 TLMLSGVSHDLRTPLTRLKLSLSMLDDEEAEPM-LQDVKEMEAMVDAFLDFSR---GVTT 294

Query: 76  SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
           S          +E+ +E++    K V +  T     +    A +   L  +   ++  G 
Sbjct: 295 SAMEETDPCKLVEEAVENWTRQGKTVHLVETVGNRRVPLRAAAVRRALDNLISNAVRYGT 354

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---------FYY 185
           +  +SV  +  +    +++  +    PE           + +D    Q            
Sbjct: 355 RARVSV--AVMQKSLRIRVEDDGPGIPEALRG-DAMRPFTRLDPARNQDLGTGVGLGLAI 411

Query: 186 VILLAHENKIRLLPEIIDD 204
           V  +A  +   L     ++
Sbjct: 412 VADIARAHGGTLRLGTSEE 430


>gi|218440686|ref|YP_002379015.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173414|gb|ACK72147.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 466

 Score = 38.3 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 18/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMRLAFG 72
           + H++ +P+  +  +LE L      +  +           I   S      L   RL  G
Sbjct: 255 VSHELRTPVSNVKVTLEALSIGAASEPELCDRFIQTAQNEINRLSRLIQDLLDLGRLEAG 314

Query: 73  YTGSVDSLIGLGD-IEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                   + L   I + IE          V ++     ++L+ +  ++L  L  +   +
Sbjct: 315 VAPLEIQSVSLRSLINRAIEAIELRTFHHGVNINNDVPDLELNVDSERMLQALLNILENA 374

Query: 130 L---PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQF 183
           +   P G  V++      N+ I  +K  G   +    P  F +    +     D   +  
Sbjct: 375 IKYSPPGSTVSLMGYTENNQKIIQIKDEGIGIKPEALPHIFEEFYRSDSSRQSDGTGLGL 434

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +   +   +  + +      +     K
Sbjct: 435 AISQRIIKAHGGTITADSVLGEGTTIIISFPK 466


>gi|170690112|ref|ZP_02881279.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170144547|gb|EDT12708.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 751

 Score = 38.3 bits (88), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 23/179 (12%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVM--QLIRLSSMSAIIRLKF 66
           + +A+L     H++ +P+  I ++LEL++    +    +  +  + +          L  
Sbjct: 376 EFLAMLG----HELRNPLAPIVSALELMERRGTDSAARERAVIQRHVDHLVRLVDDLLDV 431

Query: 67  MRLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
            R+  G        + + ++         V+    A   +++V    E +      A+++
Sbjct: 432 SRIIRGNVELDKRRVDVHEVITKAVEMTSVLVQQRAHRLKIEVDEALECVADPMRLAQVI 491

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-----RFPEKFTQIVDGNVE 173
            NL + A      GG++T+S   + + +   +++  N         P  F     G   
Sbjct: 492 ANLLINAAKYTQAGGEITVSAM-AADADHIRIRVCDNGMGIAPDVLPHVFDTFYQGTQT 549


>gi|218779128|ref|YP_002430446.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760512|gb|ACL02978.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 526

 Score = 38.3 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 18  LCSRICHDIISPIGAIH-NSLELLDE--VGIEDEVMQLIRLSSMSA-------IIRLKFM 67
           L + + H++ +PI  I       L++     ++E + ++      A          L F 
Sbjct: 295 LTAGVAHELNNPINNIMITGHMFLEDYESTDDEERIDMMNDVVNEANRAKAIIANLLDFA 354

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVSWTGEKID-LSRERA------KIL 119
           R     +GS  + + + ++ +      +   KR +++      D L R         ++ 
Sbjct: 355 R----ESGSQLAPLDMAEMLKDTIALASNRLKRSKINIDFSSTDKLPRVHGDSQQLRQVF 410

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           LNL + A  +   GG +T++V  +   +  ++K+       P+  
Sbjct: 411 LNLILNAIDASQSGGNITVTVLPADEPHYIAVKVIDYGTGIPKHI 455


>gi|217069791|gb|ACJ83256.1| two-component histidine kinase sensor AoxS [Achromobacter sp. SY8]
          Length = 501

 Score = 38.3 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSS----M 58
           +++  L A+  + + + H+I +P+G + N+L+ +++ G  DE     + L R        
Sbjct: 272 IAAERLAAVGRVAAGVAHEINNPLGGMLNALDTIEKHGSYDELTGKTLGLTRRGLMQIRR 331

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRER 115
           +    L   RL       +       D+  +IE  ++ +K   + W     +++ L    
Sbjct: 332 TVCALLVEARL----DSPLMHASDWQDLRVLIEPELS-EKGATLLWDVTAQQELPLPSHL 386

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            + + LNL + A  ++  GG V+ +V   +++    +  +G        
Sbjct: 387 VRQLTLNLLINAKNAVDLGGTVSCTVTGIQDQLTVEVANSGQHIPDDAL 435


>gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1425

 Score = 38.3 bits (88), Expect = 0.65,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 24/213 (11%)

Query: 24   HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRLAFGYTGS 76
            H++ +PI  +H  LELL    + D+   L+R    S           L F ++  G    
Sbjct: 837  HELRTPISGMHGMLELLQMSELNDDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQLQL 896

Query: 77   VDSLIGLGD-IEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAH 127
                  L   I  VI            +V + W  E  D +R  A    ++L NL   A 
Sbjct: 897  HYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLNNAV 956

Query: 128  ASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDI 181
                R G++ I V   K     ++   G         R    F Q+ + ++        +
Sbjct: 957  KFTER-GEIRIQVSFEKERLAIAVSDTGIGIAEDKQDRLFTPFEQV-ESDITRRFGGTGL 1014

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   LA +    L+ E    H   L+    
Sbjct: 1015 GLAICHQLAQKMGGTLVLESKPGHGTRLTFDFP 1047


>gi|289704827|ref|ZP_06501245.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Micrococcus luteus SK58]
 gi|289558443|gb|EFD51716.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Micrococcus luteus SK58]
          Length = 380

 Score = 38.3 bits (88), Expect = 0.66,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 68/206 (33%), Gaps = 28/206 (13%)

Query: 20  SRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIR 63
           S + H++ +P+        A+ + +   DE   E    QL         I   S +   R
Sbjct: 152 SDLAHELRTPVSVLTVYHEALQDGVSHWDEPTGELMGEQLARLTRLVEDINDVSRAEEGR 211

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERA-KILLN 121
           ++  R   G +G + +           E +      + +       +D+ R+R  ++L N
Sbjct: 212 IELDRSPQGVSGLLHAATEAHK-----EAYATKGVALTMDADPGLAVDVDRQRMGQVLGN 266

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177
           L   A    P GG+VT+  + S +    S+   G        P  F +   G+     D 
Sbjct: 267 LLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDH 326

Query: 178 -SHDIQFYYVILLAHENKIRLLPEII 202
               +       L   +   L     
Sbjct: 327 GGSGVGLAISRALIQTHGGTLSATST 352


>gi|254424785|ref|ZP_05038503.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192274|gb|EDX87238.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 814

 Score = 38.3 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 20/143 (13%)

Query: 18  LCSRICHDI---ISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM-SAIIRLKFMRLAF 71
           L S I HD+   ++PI  I   L +   D      E + ++  S+   A +  + +  A 
Sbjct: 568 LASGIAHDLNNILTPILGIAQLLRITQKDASAATHEHIDILEQSARRGASMVKQILTFAQ 627

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KI 118
           G +G   + + +  + Q + D +       +    E                      ++
Sbjct: 628 GSSGDR-ATVDVLALLQEVIDVVRQGVPSNIEIQLETSTHPDPHQTRKLVSADATHLHQV 686

Query: 119 LLNLFMVAHASLPRGGKVTISVQ 141
            +NL + A  ++P GG +T+SV 
Sbjct: 687 FMNLCVNACDAMPEGGVLTLSVD 709


>gi|223940308|ref|ZP_03632165.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891021|gb|EEF57525.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 627

 Score = 38.3 bits (88), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLSSMSAIIRLKFMRLAFGYT 74
           I HD+ + +  +  +L  +       E  +++       R S       L F R   G  
Sbjct: 251 IAHDLNNALTPVVMALSFIQGELATGESKKMLNLAQSSTRRSVEMVKQILSFARSMGGEH 310

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
            S+     + +I ++          +      E   ++    ++   LLNL + A  ++P
Sbjct: 311 ASLQIRHLIAEIVELASHTFPRSIHILSDVASELYPVTGNATQLHQVLLNLCVNARDAMP 370

Query: 132 RGGKVTISVQD 142
            GG +TI   +
Sbjct: 371 DGGSLTIEATN 381


>gi|294648986|ref|ZP_06726434.1| type 4 pilus sensor protein PilS [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825121|gb|EFF83876.1| type 4 pilus sensor protein PilS [Acinetobacter haemolyticus ATCC
           19194]
          Length = 521

 Score = 38.3 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSS 57
           A+ +   +  + L AL  L + I H+I +P+ AI  + EL +E     + M  ++IR  +
Sbjct: 299 AQKLTQRVQQLKLAALGQLSASIAHEIRNPLAAIVQANELFNESDAHQQQMLSRMIRKQA 358

Query: 58  M 58
            
Sbjct: 359 K 359


>gi|226951744|ref|ZP_03822208.1| sensor protein [Acinetobacter sp. ATCC 27244]
 gi|226837534|gb|EEH69917.1| sensor protein [Acinetobacter sp. ATCC 27244]
          Length = 521

 Score = 38.3 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSS 57
           A+ +   +  + L AL  L + I H+I +P+ AI  + EL +E     + M  ++IR  +
Sbjct: 299 AQKLTQRVQQLKLAALGQLSASIAHEIRNPLAAIVQANELFNESDAHQQQMLTRMIRKQA 358

Query: 58  M 58
            
Sbjct: 359 K 359


>gi|197121076|ref|YP_002133027.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196170925|gb|ACG71898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 525

 Score = 38.3 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 22/221 (9%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR---- 63
           S  L  L  + + + H++ +P+ ++  S+ELL  +  +  +  +L+ +    A       
Sbjct: 301 SERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVLREAARLDELV 360

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKI 118
              L+F R A    G+VD    L D  +V  +  A    V  +            +  ++
Sbjct: 361 TEFLRFARPAPLRPGAVDLASLLDDALRVFANDPAAAGLVLSREIGPAPAACDPDQIRQV 420

Query: 119 LLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK----FTQIVDGNVE 173
           + NL   A  +L  RGG++ ++         F+++ +G      E+              
Sbjct: 421 VWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAERERIFLPFHTTKERG 480

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +Q      +   +  R+            +  L 
Sbjct: 481 TGLGLAVVQ-----RIVDAHGGRVEVRSAPGQGARFTVHLP 516


>gi|89054324|ref|YP_509775.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
 gi|88863873|gb|ABD54750.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
          Length = 435

 Score = 38.3 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 10/156 (6%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ S + HD+ +P+  +  +L ++++    D ++Q +    +     L F+R   G   
Sbjct: 231 TLMLSGVSHDLRTPLTRMRLALGMMEDGPDRDALVQDVEEMEVLVATFLDFVR---GDAL 287

Query: 76  SVDSLIG-LGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERA--KILLNLFMVAHASLP 131
                +  L  +  V+E        + +         + R  A  + + NL      +L 
Sbjct: 288 DDPESVDPLALVADVVEKARRGGGEIALDLPDAMAPAMVRPMAVQRAVTNLV---ANALR 344

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            GG+  +SV   +     +++  G      ++   +
Sbjct: 345 YGGRAAVSVTVQERTFRITVEDAGPGIPEDQRADAL 380


>gi|187920731|ref|YP_001889763.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
 gi|187719169|gb|ACD20392.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
          Length = 522

 Score = 38.3 bits (88), Expect = 0.68,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 78/217 (35%), Gaps = 23/217 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVM-------QLIRLSS 57
           L +    +L  L +++ H+I +P+GA+   LE  L  +    ++ +       + I    
Sbjct: 292 LQAERFASLGKLAAQVAHEIRNPLGAVRLKLENVLAHDGHAPNQSLTSALGQVERIETQV 351

Query: 58  MSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107
            S +   + + L        +              ++ ++  + VD     + +V     
Sbjct: 352 TSLLALTQPVTLVMNTVDVAEWVTASAGTHRERAAQKAVDLTVEVDPLKPAQPEVDGQAA 411

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQ 166
           + D   + A+ L NL + A    P GGKV +  Q +   N+  + +  N    P     +
Sbjct: 412 RFD-PVQMARALDNLILNAIRHAPPGGKVAVRAQHTGTGNMLRIAVVDNGPGIPVADRER 470

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           I +  V    D   +    V  +A  +  R      D
Sbjct: 471 IFEPFVTGRPDGSGLGLAVVREVAAAHGGRAHVADTD 507


>gi|298489788|ref|YP_003719965.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298231706|gb|ADI62842.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1418

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMRLAFG 72
            I HD+ + +  I  + +LL     +DE      + +I  ++      +K    F R   G
Sbjct: 1057 IAHDLNNILTPILGAAQLLKGRFAKDEERHPQLLAIIENNAQRGAALVKQVLSFARGLKG 1116

Query: 73   YTGSVDSLIGLGDIEQVIEDFI--AVDKRVQV---SWTGEKIDLSRERAKILLNLFMVAH 127
              G V     + +I Q+ +     +++   Q+    WT         +   L+NL + A 
Sbjct: 1117 ERGIVQVKHLIAEIIQIGKQTFPKSIEFTTQIPENLWTVSGDTTQLHQV--LMNLVVNAR 1174

Query: 128  ASLPRGGKVTISVQD 142
             ++P GG +TI+ ++
Sbjct: 1175 DAMPEGGTLTITTEN 1189


>gi|194365517|ref|YP_002028127.1| response regulator receiver sensor signal transduction histidine
           kinase [Stenotrophomonas maltophilia R551-3]
 gi|194348321|gb|ACF51444.1| response regulator receiver sensor signal transduction histidine
           kinase [Stenotrophomonas maltophilia R551-3]
          Length = 377

 Score = 38.3 bits (88), Expect = 0.69,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 31/226 (13%)

Query: 11  SMDLVALLCSRICHDIISPIGAI-----HNSLELLDEVGIEDEVMQLIRLS----SMSAI 61
           ++ L   + + + HD+ +P+ AI       +L+L        + +Q +  S    +    
Sbjct: 152 ALKLNETMAAVLTHDLRTPLSAILLCVDKLALDLPQGNAGAQQTLQYLEASTLRMARMVE 211

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGE---KIDLSRER 115
             L F R+  G      S   L ++ + +           R+++   G+   + DL R  
Sbjct: 212 QLLDFSRIRSGGLRLQASTCDLAEVTRAVVAEVGSAHGAGRIRLDTHGDTQLQGDLDR-L 270

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGN-----LARFPEKFTQIVD 169
            ++  NL      +L  G +  + V      N+   ++  G      L R  E F     
Sbjct: 271 GQVAANLI---GNALTHGNEAQVEVDGRDPRNVLLRVRNAGEIDAALLPRLFEPFKASFH 327

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +       Y V      +  R+         VV  ALL +
Sbjct: 328 QSNGLGLG-----LYIVDQFVRAHGGRIGARNEAGQ-VVFEALLPR 367


>gi|239905415|ref|YP_002952154.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795279|dbj|BAH74268.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 587

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 11  SMDLVAL--LCSRICHDIISPI---GAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRL 64
           S    A+    +R+ H+I +P+   G   N +   + E G + E + +I   +      L
Sbjct: 365 SARFAAIGEAAARLSHEIKNPLMLMGGFANQVRRHVPEDGADYEKLGIIESEAKRLETLL 424

Query: 65  K----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKI- 118
                F R A       D    + +   ++   +     V  +  GE    +  + A+I 
Sbjct: 425 NEVRDFTRPAPPQIEPRDLAATVRESLAIMAGAMESRGIVVTTGFGEGLEAVPHDAARIK 484

Query: 119 --LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             LLNL   A  ++  GG +T++ +  ++    ++   G     PE    
Sbjct: 485 QVLLNLLKNAAEAMEHGGSLTVTAEIVRDRARVTVADTGGG--IPEAMRA 532


>gi|222056726|ref|YP_002539088.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221566015|gb|ACM21987.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 475

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 58/159 (36%), Gaps = 34/159 (21%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H+I SP+ AI  + ELLDE  +  E  QL   +  +   R++           VD ++ L
Sbjct: 266 HEIKSPLSAIKGAAELLDE-QMPTEKRQLFLSNIRTEANRIQ---------DLVDRMLKL 315

Query: 84  G--DIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILL------------------- 120
              +  + +++   + ++  +      +   LSR+  +I                     
Sbjct: 316 SELEARKTLQNVEPVCLNGLLTAVLESKGPILSRKGLQIAFHVDEGASVPGDLFLLHQAV 375

Query: 121 -NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            N+   A    P GG + I+   ++   +  +   G   
Sbjct: 376 SNIVQNAIDFSPSGGTIAITATVAEGALVIVVDDEGPGI 414


>gi|107100692|ref|ZP_01364610.1| hypothetical protein PaerPA_01001719 [Pseudomonas aeruginosa PACS2]
          Length = 858

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74
           I HD  + +  I  SLEL+     +     LI     S+  A       L F R      
Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127
                 + L ++ + + D I       +    E  +          +    +LNL + A 
Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185
            ++  GG++ I    ++ + +    ++G  A R+         G + + + +  ++ ++
Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675


>gi|300697829|ref|YP_003748490.1| sensory histidine kinase in two-component regulatory system with
           OmpR (envZ) [Ralstonia solanacearum CFBP2957]
 gi|299074553|emb|CBJ54104.1| putative sensory histidine kinase in two-component regulatory
           system with OmpR (envZ) [Ralstonia solanacearum
           CFBP2957]
          Length = 437

 Score = 38.3 bits (88), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 13/145 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +P+  +    E+L +          I     S    ++   LA+  +G  ++  
Sbjct: 234 IAHDLKTPLSRLRLRAEMLTDPKAGAG----IERDVESMSAIVEQF-LAYAQSGDSEARD 288

Query: 82  GLGD--IEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVT 137
              D  +  +++ F    K V +     +    +     +I++NL      +   G +  
Sbjct: 289 VTVDRHLRGLVQPFAEQGKHVALDLRAGERFRLKPTHLERIVVNLL---DNAFAYGAE-P 344

Query: 138 ISVQDSKNENIFSLKINGNLARFPE 162
           + +  + +E  F+L +  + A  P+
Sbjct: 345 VRLATAADERGFTLTVEDHGAGIPQ 369


>gi|257487350|ref|ZP_05641391.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|320322867|gb|EFW78958.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320329824|gb|EFW85812.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330988065|gb|EGH86168.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 468

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +++        +  D RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D+    +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + +  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 465


>gi|254515596|ref|ZP_05127656.1| sensor protein GacS [gamma proteobacterium NOR5-3]
 gi|219675318|gb|EED31684.1| sensor protein GacS [gamma proteobacterium NOR5-3]
          Length = 675

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 29/178 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG----Y 73
           L +R+ H++ +P+  + ++L LL +  +  +   L+RL+S S+   L  +          
Sbjct: 172 LFARMSHEMRTPLNGVVSALSLLGDHPMSAQAQDLLRLASSSSRNLLHVINYVLDISKIE 231

Query: 74  TGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL-----SRERAK-ILLN 121
            G       + ++  ++          AV+KR+++SW+   +        + + +  LLN
Sbjct: 232 AGEEVFDATVFELNTLLRSVTDIVRARAVEKRLELSWSVSPLLSDLYVGDKSKLRQCLLN 291

Query: 122 LFM----------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           L            VA  +LP   +  +  +     +        +  R  E F   ++
Sbjct: 292 LVTNAIKFTDSGSVAVRALPSASEDAVRFEVEDTGSGI---SADDKPRIFEPFWTGMN 346


>gi|197249706|ref|YP_002149081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213409|gb|ACH50806.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 465

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|195874360|ref|ZP_02701732.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629005|gb|EDX48397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 465

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|119899781|ref|YP_934994.1| putative sensor histidine kinase [Azoarcus sp. BH72]
 gi|119672194|emb|CAL96108.1| putative sensor histidine kinase [Azoarcus sp. BH72]
          Length = 711

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 54/146 (36%), Gaps = 10/146 (6%)

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIA 95
           +L+E+ + DE +  IR         L+F R    A GY  +VD    L D   +    ++
Sbjct: 507 VLNEIRLIDEQVNRIRKIVTKL---LQFARPGEFA-GYAAAVDVNTVLADCLVLTRQHLS 562

Query: 96  VDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
                     G    +        ++L+NL + A  ++P GG +T++  D        + 
Sbjct: 563 RQGVTVRHEPGTLRLVEINEQELQQVLINLIVNAVQAMPAGGTLTLTTADWDERGPGGIV 622

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS 178
             G      +    I D ++    D 
Sbjct: 623 ARGVCVTVRDTGQGIRDEDLARIFDP 648


>gi|83311465|ref|YP_421729.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946306|dbj|BAE51170.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 373

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59
           ++N   ++S+M   A+L     H++ +P+  I  + +LL++   ED+ +  +LI   +  
Sbjct: 137 SRNAARSVSAM--AAILA----HEVKNPLSGIRGAAQLLEQNAGEDDRVLTRLICDEADR 190

Query: 60  AIIRLKFMRL-AFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRV--QVSWTGEKIDL 111
            +  +   R+ AF    SV+         L  + ++ E   A   R+      +   +  
Sbjct: 191 IVALVD--RMEAFSDNPSVERSAVNIHRVLEHVRRISEAGFARSVRIIENYDPSLPPVLG 248

Query: 112 SRER-AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            R++  ++ LNL   A  ++P  GG++ +     ++    +L  +      P   +   +
Sbjct: 249 DRDQLVQVFLNLVKNAAEAVPEEGGEI-VLSTGYQHGVRLALPGSETRRHLPLVVSIQDN 307

Query: 170 GN-VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           G  +   +  +    +     +     + L+ +II DH  V+ 
Sbjct: 308 GPGIPEDLKPNLFDAFVTTKTSGSGLGLALVAKIIGDHGGVIE 350


>gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1223

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 71/169 (42%), Gaps = 19/169 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK----FM 67
           +L     + + H++ +P+  I +  E LL + G+  +  +L+ + + +    LK     +
Sbjct: 189 ELKTQFFANVSHELRTPLTLISHPTEKLLKDPGVSADAKKLLEVVARNTRGLLKHVNNLL 248

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGE-----KIDLSRERA 116
            ++    G ++    + D+ + I       + +A DK+++              + R++ 
Sbjct: 249 DISKLEAGKMNVNYSMADVGKTITTIGLCFELLAKDKKLEYIINAPKDGLLMAAIDRDKI 308

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE 162
            +++ NL   A    P GGK+ ISV+  +      F + +       PE
Sbjct: 309 ERVVTNLISNAFKFTPTGGKIRISVEPDQLNQNPAFLVTVADTGPGVPE 357


>gi|323699236|ref|ZP_08111148.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459168|gb|EGB15033.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 613

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 70/221 (31%), Gaps = 38/221 (17%)

Query: 24  HDIISPIGAIHNS--LELLDEVGIEDE---VMQLIRLSSMSAIIR----LKFMRLAFGYT 74
           HD+ +PI  + +   L L++E  ++ E   ++ LI   +  A+      L   R+  G  
Sbjct: 399 HDLKAPIIGVIDGCRLLLMEEERLDGELSEMLHLIEHQAEKALRLIGLSLTLYRIEAGTY 458

Query: 75  GSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKILL----- 120
                   L     +    +   IA   +        + D  R         +LL     
Sbjct: 459 AYEPEPTDLMAVIREALGNLGGRIADRGQTVAVSLDGRPDDGRDALVVPANPLLLETMVS 518

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL + A  + P GG +++ V  +  +    +  N      P      +         +H 
Sbjct: 519 NLLLNAVEAAPDGGAISVRV--APGDPTVLVIAN------PGAVPGSLRETFFDKYATHG 570

Query: 181 IQ------FYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
            Q       Y   L A      +  E+ D +    L   L 
Sbjct: 571 KQGGTGLGTYSARLAATAMGGAIALEVSDAEDRTTLRVTLP 611


>gi|46446999|ref|YP_008364.1| putative two-component sensor histidine kinase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400640|emb|CAF24089.1| putative two-component sensor histidine kinase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 410

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 25/38 (65%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +LNL + A  ++P+GGK+T+SV+  ++E +  +   G
Sbjct: 310 AILNLLVNAMQAMPQGGKITVSVEKMQDEVVIIISDTG 347


>gi|16767427|ref|NP_463042.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205358145|ref|ZP_02576065.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|17865735|sp|P37461|ZRAS_SALTY RecName: Full=Sensor protein zraS
 gi|6960345|gb|AAF33505.1| Salmonella typhimurium sensor protein (HYDH) (SW:P37461); contains
           similarity to Pfam domain PF00512 (signal), Score=270.1,
           E=2.9e-77, N=1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422732|gb|AAL23001.1| sensory kinase in two component regulatory system with HydG
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205327269|gb|EDZ14033.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249277|emb|CBG27139.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301160669|emb|CBW20200.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915279|dbj|BAJ39253.1| sensor kinase ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223373|gb|EFX48440.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332990992|gb|AEF09975.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 465

 Score = 38.3 bits (88), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|313106226|ref|ZP_07792476.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310878978|gb|EFQ37572.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 858

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74
           I HD  + +  I  SLEL+     +     LI     S+  A       L F R      
Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127
                 + L ++ + + D I       +    E  +          +    +LNL + A 
Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185
            ++  GG++ I    ++ + +    ++G  A R+         G + + + +  ++ ++
Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675


>gi|221639885|ref|YP_002526147.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221160666|gb|ACM01646.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 736

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73
           I HD  + + AI    +LL      ++     L  I  ++  A       L F R     
Sbjct: 373 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 428

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126
                  I L ++   +   +     +RV +  +            R+  ++L+NL + A
Sbjct: 429 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 488

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182
             ++P GG + I  +D               A  P ++  I   +    I    +Q    
Sbjct: 489 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 545

Query: 183 -FYYVILLAHENKIRLLP 199
            F+    +     + L  
Sbjct: 546 PFFTTKRVGEGTGLGLST 563


>gi|218892783|ref|YP_002441652.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218773011|emb|CAW28823.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 857

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74
           I HD  + +  I  SLEL+     +     LI     S+  A       L F R      
Sbjct: 503 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 558

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127
                 + L ++ + + D I       +    E  +          +    +LNL + A 
Sbjct: 559 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 618

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185
            ++  GG++ I    ++ + +    ++G  A R+         G + + + +  ++ ++
Sbjct: 619 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 674


>gi|89054287|ref|YP_509738.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
 gi|88863836|gb|ABD54713.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
          Length = 451

 Score = 38.3 bits (88), Expect = 0.72,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 72/181 (39%), Gaps = 20/181 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + A+  SLEL  EV    E   L+   +  A IR        L F R A   
Sbjct: 220 IAHDFNNILTALQGSLELYYEVPEGQERDALVDE-AREAGIRATALVAQLLSFARRAPLE 278

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
           TG+ ++   L D+  + +  +    ++ +        +  + + +   LLNL + A+ ++
Sbjct: 279 TGAHNANAVLDDLRMLAQRLLPAGIQLNLRVVDGPACVLADASGLRSALLNLILNANDAM 338

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYY 185
              G +T++V   +       + N  LA  P+              + + ++   ++ ++
Sbjct: 339 NGQGAITLAVDMVEGPAR---EANATLALTPDNAHLCFSVADDGPGMSAEVEHRAVEPFF 395

Query: 186 V 186
            
Sbjct: 396 T 396


>gi|327478950|gb|AEA82260.1| osmolarity sensor protein EnvZ [Pseudomonas stutzeri DSM 4166]
          Length = 443

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74
            L+ + + HD+ +P+  +  SLEL      ++    +IR         L +F  LAF   
Sbjct: 223 ELMLAGVSHDLRTPLTRLRLSLEL--MASDDELTEDMIRD-VEDMNAILDQF--LAFVRD 277

Query: 75  GSVDS--LIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129
           GS +      L + I +V+  +    + V++          R  +  ++L+NL      +
Sbjct: 278 GSDEPVETTDLAELIREVVAPYNQQQETVRLCVEPMPPFALRRVSIKRLLVNLI---ENA 334

Query: 130 LPR-GGKVTISVQDSKNE 146
           L   GG V ++   S ++
Sbjct: 335 LRYAGGGVEVAAYVSGDQ 352


>gi|328544620|ref|YP_004304729.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414362|gb|ADZ71425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 469

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 70/199 (35%), Gaps = 9/199 (4%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI ++    E +D+    ++++ ++   +      L F R     T      +
Sbjct: 271 ISHDLRTPITSLRIRAEFIDDDEDREKMIAILDEMAQMTEATLAFARDE--ATQEERRSV 328

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141
            LG + + I    +   R       +++ L+     +   L  +   ++  G +  I+V+
Sbjct: 329 DLGGLMESIAGDQSDLGRDVEVAARDRVVLACRPVALKRALRNLVENAVRYGTRARIAVR 388

Query: 142 DSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195
               + + ++  +G            E F ++ +     T     +       + H +  
Sbjct: 389 AEGGQAVLTVDDDGPGIADDRLADVFEPFVRLEESRSGET-GGIGLGLAIARSIVHAHGG 447

Query: 196 RLLPEIIDDHNVVLSALLE 214
            +  E   +  +  +  L 
Sbjct: 448 TIALENRPEGGLRATVHLP 466


>gi|205360185|ref|ZP_02835113.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340594|gb|EDZ27358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088603|emb|CBY98362.1| sensor kinase for HydG, hydrogenase 3 activity [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 465

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|146280682|ref|YP_001170835.1| osmolarity sensor protein EnvZ [Pseudomonas stutzeri A1501]
 gi|145568887|gb|ABP77993.1| osmolarity sensor protein EnvZ [Pseudomonas stutzeri A1501]
          Length = 443

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74
            L+ + + HD+ +P+  +  SLEL      ++    +IR         L +F  LAF   
Sbjct: 223 ELMLAGVSHDLRTPLTRLRLSLEL--MASDDELTEDMIRD-VEDMNAILDQF--LAFVRD 277

Query: 75  GSVDS--LIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHAS 129
           GS +      L + I +V+  +    + V++          R  +  ++L+NL      +
Sbjct: 278 GSDEPVETTDLAELIREVVAPYNQQQETVRLCVEPMPPFALRRVSIKRLLVNLI---ENA 334

Query: 130 LPR-GGKVTISVQDSKNE 146
           L   GG V ++   S ++
Sbjct: 335 LRYAGGGVEVAAYVSGDQ 352


>gi|254241878|ref|ZP_04935200.1| hypothetical protein PA2G_02599 [Pseudomonas aeruginosa 2192]
 gi|126195256|gb|EAZ59319.1| hypothetical protein PA2G_02599 [Pseudomonas aeruginosa 2192]
          Length = 473

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 83/221 (37%), Gaps = 48/221 (21%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+   ++  +          
Sbjct: 274 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELLVKGALQCV---------- 323

Query: 72  GYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KIL 119
                      + +          ++ + E ++A D RV+V     +    +  A  + +
Sbjct: 324 -------KDTDIHENVEPVDLDLLLQHIAEPYLA-DGRVEVVGRAAEPYPGKPLALKRCI 375

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
            NL      +L  G +  +S++D     +  +  +G     PE+  + +       +   
Sbjct: 376 GNLL---DNALKYGERARLSLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPR 429

Query: 180 DIQFYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
             Q Y + L     +AH +   +  +   +  + +S  L +
Sbjct: 430 G-QGYGLGLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 469


>gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 441

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIR 54
           MA N+   +  +         L + + HD+ SPI +I   LE   + +  +  +  Q   
Sbjct: 192 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHMKDGDLPPQERQRYV 251

Query: 55  LSSMSAIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEK 108
            +++    RL     +   L+   T  V+  I    I ++++D  +  + R +      +
Sbjct: 252 KTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 311

Query: 109 IDLSRERAKI----------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            DL    A++          L NL   A    P GG+V + + + + E   ++   G   
Sbjct: 312 ADLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGPGI 371

Query: 159 R---FPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P  F +    +     D     +       +   +   L  E            L
Sbjct: 372 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRFCL 431

Query: 214 E 214
            
Sbjct: 432 P 432


>gi|254234370|ref|ZP_04927693.1| hypothetical protein PACG_00213 [Pseudomonas aeruginosa C3719]
 gi|254239611|ref|ZP_04932933.1| hypothetical protein PA2G_00228 [Pseudomonas aeruginosa 2192]
 gi|126166301|gb|EAZ51812.1| hypothetical protein PACG_00213 [Pseudomonas aeruginosa C3719]
 gi|126192989|gb|EAZ57052.1| hypothetical protein PA2G_00228 [Pseudomonas aeruginosa 2192]
          Length = 858

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74
           I HD  + +  I  SLEL+     +     LI     S+  A       L F R      
Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127
                 + L ++ + + D I       +    E  +          +    +LNL + A 
Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLGPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185
            ++  GG++ I    ++ + +    ++G  A R+         G + + + +  ++ ++
Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675


>gi|332187626|ref|ZP_08389362.1| sensory box protein [Sphingomonas sp. S17]
 gi|332012374|gb|EGI54443.1| sensory box protein [Sphingomonas sp. S17]
          Length = 868

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 32/224 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIR--------LKFMR--- 68
           + HD  + +  I  SLEL+     +    ++ R   ++  A  R        L F R   
Sbjct: 494 LAHDFNNLLAGISGSLELMALRLAQGRAGEIDRYMDAAQGATRRAAALTHRLLAFSRRQT 553

Query: 69  LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           LA   T     + G+ D I + +   I V+      W    +D  +     LLNL + A 
Sbjct: 554 LAPRPTDIAALVAGMADLIRRTVGPGITVETPSPDDWWTVLVDAPQLE-NALLNLCINAR 612

Query: 128 ASLPRGGKVTISVQD--------------SKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            ++P GG++ I++++                +  + S+   G     PE   +  D    
Sbjct: 613 DAMPDGGRIAIAIRNRSSRDPDDTHRDIPDGDYLMLSVTDTGTGM-TPEVIEKAFDPFFT 671

Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215
           +            ++   A ++  ++           +S  L +
Sbjct: 672 TKPLGQGTGLGLSMIYGFARQSGGQVRIASTVGEGTTVSLYLPR 715


>gi|226225983|ref|YP_002760089.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27]
 gi|226089174|dbj|BAH37619.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27]
          Length = 282

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 68/228 (29%), Gaps = 22/228 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55
           A +   +     L  L+     HD+ SPIGA     E L           ++  + LI  
Sbjct: 46  ANDTWLDQHDPSLALLVG--FAHDLRSPIGATLLLAERLRAGQFGPVTAQQERQLGLIYE 103

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEK 108
           S           L   R    +    D +  L D+   +      IA ++ + + W G +
Sbjct: 104 SIFGMSALTGDLLDLARHGTSHRRRRDIVFPLSDLWASVRALVQPIAEERGLLLRWAGPR 163

Query: 109 IDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            D          +ILLNL   A      G     +       +     +       P   
Sbjct: 164 NDHRIGEPEALRRILLNLVTNALKFTVSGSVTVTATVVGAGSDTIQFSVADTGCGLPLDL 223

Query: 165 TQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            + +    ++      S  +     + L  +   RL      +  +V+
Sbjct: 224 AEQLRTAPDAFAGINTSAGLGIAMCLTLLRDLGSRLEIRDNSESGLVV 271


>gi|254467373|ref|ZP_05080784.1| sensor histidine kinase [Rhodobacterales bacterium Y4I]
 gi|206688281|gb|EDZ48763.1| sensor histidine kinase [Rhodobacterales bacterium Y4I]
          Length = 470

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIG 82
           HD+ SP+ A+    E+++E    D ++  I          L F R   G   +     + 
Sbjct: 277 HDLRSPLTAMRVRSEMVEEEETRDSLIASIEEMQHMVEETLSFAR---GLADAEPRQDVD 333

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           +G   + + + +     +      +         + L N+      +    G   +S   
Sbjct: 334 IGTFLEALRESMPEGFTLAQGDCVQVRVRPNAMRRALRNVI---ENAQRYSGGAEVSYAA 390

Query: 143 SKNENIFSLKINGNLARFPEK 163
                I  +   G     PE 
Sbjct: 391 VAETVIIRVCDRGPGIPEPEL 411


>gi|220917598|ref|YP_002492902.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955452|gb|ACL65836.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 451

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 12/210 (5%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFG 72
            L+ S+I H++ +P+GAI   +++      + +    ++++          L    L+F 
Sbjct: 229 ELMSSQISHELKNPLGAIKALVQISARGSSDGDTCERLKVVSSEVERMREILDGY-LSFS 287

Query: 73  YTGSVDSLIGLG------DIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNLFMV 125
                     L       ++  V++   A     +            R   + LLNL   
Sbjct: 288 RPLECLQREDLSLGELADEVLSVLQGRAAAAGVGLHRRGDARVEADPRRLKEALLNLVAN 347

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  +  RG +V + V D       +++  G     P    ++      +      +    
Sbjct: 348 AVEASRRGDRVEVLVADHGGTVEVAVRDTGRGM-PPAVVARLGTPFFTTRDQGTGLGVLL 406

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 ++   L      D     +  L +
Sbjct: 407 ARRAFVQHGGALEYASAPDAGTTATGTLPR 436


>gi|27380919|ref|NP_772448.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27354085|dbj|BAC51073.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 861

 Score = 38.3 bits (88), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGY-TGSV 77
           I HD  + + AI  + + LL+     D   Q I     +A      +R  LAF       
Sbjct: 477 IAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQLLAFSRRQTLR 536

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKILLNLFMVAHA 128
             ++ LGD    +   +     ++V++        W  +      E+   ++NL + A  
Sbjct: 537 PQVLDLGDALSDLTMLLRRLIGEKVKLDLIHGRDLWPVKVDVSQFEQV--IVNLAVNARD 594

Query: 129 SLPRGGKVTISVQDSKNENIFSLKING 155
           ++P GGK+ I   +   E+   L   G
Sbjct: 595 AMPDGGKLIIRTANVATEDAGKLAYKG 621


>gi|330967657|gb|EGH67917.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 676

 Score = 38.3 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + +  I  SLEL+           L         S+  A      + LAF    
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371

Query: 76  SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
           S+DS  + +  +   +++ +       +          WT E      +    LLNL + 
Sbjct: 372 SLDSKPVDMNHLVDAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181
           A  ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S   
Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486

Query: 182 QFYYV 186
             ++ 
Sbjct: 487 DPFFT 491


>gi|258592618|emb|CBE68927.1| putative Multi-sensor signal transduction histidine kinase
           precursor [NC10 bacterium 'Dutch sediment']
          Length = 601

 Score = 38.3 bits (88), Expect = 0.74,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----------- 57
           S  L  L  L S + H+I +P+ A+   LELL +   +    + +  S            
Sbjct: 381 SRKLADLGRLTSGVAHEIKNPLNAMIIHLELLKQKLNDPS--ETVAKSLEFLGGEVHRLD 438

Query: 58  MSAIIRLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                 L+F+R   LA         L  +  + +       V   +++  T   I+   E
Sbjct: 439 RMVQGFLRFVRPQTLALRPMSLNTLLQEVVRLAEAQGAHAGVTFVLRLDGTIPPINGDHE 498

Query: 115 RAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             +   LNL + A  ++P GG VT++   S    I +  I+  +    E   +I      
Sbjct: 499 LLRQAFLNLVLNACQAMPDGGAVTLATDRSAEGAIRAHVIDHGIGIPAEDLDKIFRLYYT 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  D + I    V  +   +   +  +        ++    
Sbjct: 559 TKPDGNGIGLSLVYRIVQMHGGSVEVDSKVGQGTTMAVTFP 599


>gi|254448626|ref|ZP_05062085.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium
           HTCC5015]
 gi|198261815|gb|EDY86101.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium
           HTCC5015]
          Length = 436

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 77/217 (35%), Gaps = 27/217 (12%)

Query: 24  HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYT 74
           H++ +P+  +   +ELL+    ++ +++ ++R S+     R++          RL     
Sbjct: 216 HELKTPLTVMSGYMELLEGTPELDQDLLSVVR-SADEQTARMRRLVDDLLTLSRLESNTQ 274

Query: 75  GSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHA 128
              + ++    +E V+ED   ++ D+   V  + ++  +      +    L NL   A  
Sbjct: 275 ARFEPIMVAAILETVVEDAIHLSGDRDHDVGLSADRELIIDGVYSDLVSALSNLVFNAVN 334

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHD-- 180
             P G  V +S Q   +E +  +K NG         R  E+F +   G       +    
Sbjct: 335 HTPDGSVVRVSWQREGDEAVLRVKDNGLGIEPRHLPRLTERFYRAQAGRERDHSSARQGR 394

Query: 181 ---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +  RL  +              
Sbjct: 395 GTGLGLAIVKHIVQAHGGRLSIQSTPGEGAEFVCYFP 431


>gi|167577307|ref|ZP_02370181.1| probable two-component sensor kinase [Burkholderia thailandensis
           TXDOH]
          Length = 389

 Score = 38.3 bits (88), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 33  IHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDI 86
           +  + E +D   +  ++  LI  S   A  R++  R+      F   GS + +   + + 
Sbjct: 185 LRAAQEEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADIHEG 241

Query: 87  EQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISV 140
            +   + +  + + +     +  +L           ++++NL M A  ++   G +TI  
Sbjct: 242 LEATLNVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRT 301

Query: 141 QDSKNENIFSLKING 155
           +   +    +++  G
Sbjct: 302 RREGDGVTIAIEDTG 316


>gi|320109345|ref|YP_004184935.1| histidine kinase [Terriglobus saanensis SP1PR4]
 gi|319927866|gb|ADV84941.1| histidine kinase [Terriglobus saanensis SP1PR4]
          Length = 254

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 16/160 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLA--- 70
                + I H+I +P+  I N   L      E +    +R         L   +R+A   
Sbjct: 37  AGQFSAAIMHEINNPLETISN---LAYLAKAEADNAAKVREYLTQLESELANVIRIAKQT 93

Query: 71  ---FGYTGSVDS--LIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLN 121
              FG   ++ +  L+ + +   ++       K+V    ++           E  ++L N
Sbjct: 94  LGFFGPAEALRAVNLVDVAESALLVHGRRLSAKQVNLVKRLVDQATVKIHPGEMLQVLSN 153

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           L   A  +LP  G + I ++ SKNE    +  +G+    P
Sbjct: 154 LIANAVDALPEKGTLAIRLRKSKNEVHLMIVDDGHGIPPP 193


>gi|260892382|ref|YP_003238479.1| histidine kinase [Ammonifex degensii KC4]
 gi|260864523|gb|ACX51629.1| histidine kinase [Ammonifex degensii KC4]
          Length = 555

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 79/215 (36%), Gaps = 22/215 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI----RLSSMSAIIRLKFMRL 69
           L + + H++ +P+ +I   L+LL    D+   E   ++++      +       L F R 
Sbjct: 339 LATALFHEVRNPLTSIKGVLQLLYEKRDDQDPERRYLEVVLGELDRTVRIIRNFLYFARP 398

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDLSRERAKILLN 121
              +    D    L DI  ++E   A   RV+VS+             DL ++     LN
Sbjct: 399 KDCHPVPTDLDALLRDILLMVE-LQASAARVEVSYDPHPGTPVILVDPDLIKQAV---LN 454

Query: 122 LFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           L   A  ++P+GGK+   +        I  ++  G     PE F ++ +    +      
Sbjct: 455 LAQNALQAMPQGGKLFFRLYPQGSEWVIIEVEDTGTGI-PPEHFPRLGEAFFTTRRGGTG 513

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +       +A  +  R+  E  +         + +
Sbjct: 514 LGLAVSYQIAKMHGGRIEVESEEGKGSKFRIKIPQ 548


>gi|194449893|ref|YP_002048158.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205359439|ref|ZP_02670061.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194408197|gb|ACF68416.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205336113|gb|EDZ22877.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 465

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|315647929|ref|ZP_07901030.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315276575|gb|EFU39918.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 448

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 20  SRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAII---RLKF----M 67
           S + H I + IG I  S E     L  + G   E +++I  SS   +    R++      
Sbjct: 227 SMLNHTIKNEIGKIAISTENVKLMLTQDSGAVMEQLEVITHSSEHLVAMVGRIQQQMKDF 286

Query: 68  RLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLSRERAKILLNLFM 124
           RL      +    + + L + E +    I +D + +Q  W        +E    + NL  
Sbjct: 287 RLVEQPARTDQLIAEVQLREYELLSRYGIELDVQNLQRPWLLADAVHLKE---AISNLIR 343

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +  ++P GG++TI+V   +     S+K NG+  
Sbjct: 344 NSVEAMPEGGRITITVTADRKGAAISVKDNGSGI 377


>gi|158521331|ref|YP_001529201.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510157|gb|ABW67124.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 457

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 33/166 (19%)

Query: 22  ICHDIISPIGAIHNSLELLD-----------EVGIEDEVMQLIRLSSMSAII-------- 62
           I H++ SP+  I    ELL              GIE E++ + RL +  A          
Sbjct: 242 ISHELCSPLTRIRLGTELLHKHVSGDRAANYLKGIETEIVSMDRLVANMAAYSGMNLPGF 301

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                R+   RL     G  +  + + +++ +     A   R      G++  L++    
Sbjct: 302 TPSMGRISPWRL---VAGVHERYLPVAEVQNI--HLAADGDRELPEIEGDRELLTQVFVN 356

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +L N F       P GG +TI  +++ +   F +   G      ++
Sbjct: 357 LLDNAF----RHTPAGGTITIGAENAGDRVRFFVSDTGPGVPEADR 398


>gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 776

 Score = 38.3 bits (88), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 21/199 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGY 73
           + H++ +P+  + N LE+L      D  +   R          +      L+  R+  G 
Sbjct: 422 LAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGK 481

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL-----SRERAKILLNLFMV 125
                  + L    Q   +      +     +S T  +  L         ++++LNL   
Sbjct: 482 LELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADPTRLSQMILNLLNN 541

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDSHD 180
           A    P GG ++++ +   +E +  ++ +G                 +   ++ +     
Sbjct: 542 AAKYTPPGGTISLAAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFSQLAPALDRSQGGLG 601

Query: 181 IQFYYVILLAHENKIRLLP 199
           I    V  LA  +   +  
Sbjct: 602 IGLALVRGLAELHGGTVAA 620


>gi|163736180|ref|ZP_02143599.1| periplasmic sensor signal transduction histidine kinase
           [Phaeobacter gallaeciensis BS107]
 gi|161390050|gb|EDQ14400.1| periplasmic sensor signal transduction histidine kinase
           [Phaeobacter gallaeciensis BS107]
          Length = 439

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 25/202 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYT 74
            L+ S + HD+ +P+  +   L +LDE   E      +R         L  F+  + G +
Sbjct: 236 TLMLSGVSHDLRTPLTRMKLGLSMLDEEDAEP-----LRQDVDEMQALLDAFLDFSRGVS 290

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA--KILLNLFMVAHASL 130
            S    +    +  ++ D      +  +    +G+   + R  A  + + NL      ++
Sbjct: 291 TSEPEEVDPHVMITLLVDGWRRQGKDVMLGEMSGKGKVMLRGSAIRRAVQNLI---SNAV 347

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-------- 182
             G +  +SV  ++      ++ +G      ++          + +D    Q        
Sbjct: 348 RYGTRARVSVAMTEKFLRIRVEDDGPGIAEADRTEAT---RPFTRLDPARNQDLGSGVGL 404

Query: 183 -FYYVILLAHENKIRLLPEIID 203
               V  +A  +   L  E   
Sbjct: 405 GLAIVTDIARAHGGTLRLEQSA 426


>gi|148263898|ref|YP_001230604.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397398|gb|ABQ26031.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score = 38.3 bits (88), Expect = 0.77,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 80/208 (38%), Gaps = 12/208 (5%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           L + I H+I +P+  I   L+ L +   ++ E   ++  +        + +     Y   
Sbjct: 622 LSAGIAHEIRNPLTGISLLLDDLHDRPAVDSESQAMMGKALAEIERVERLISSLLNYASP 681

Query: 77  VDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEK-IDLSRERAKI---LLNLFMVA 126
             +    GDI +V++D + + K+      V++  + ++      +  KI   LLN+   A
Sbjct: 682 PKAEFREGDINRVVQDTLLLFKKECEKQGVELVSSLQEIPSFPFDAGKIRQALLNISKNA 741

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +LP GGK+ IS   + +  I ++  NG     PE    + +           +     
Sbjct: 742 LGALPEGGKIEISTALAGDAAIINVSDNGQGI-EPEDIPLLFEPFFTRKTGGTGLGLSIT 800

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  E+  R+       +  V S  L 
Sbjct: 801 QRIIDEHHGRITVTSSKGNGTVFSVSLP 828


>gi|326625882|gb|EGE32227.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 534

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 430 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTPYFTTKA 489

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 490 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 527


>gi|307635113|gb|ADI85671.2| sensor histidine kinase, HAMP domain-containing, nonconserved
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 496

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 78/217 (35%), Gaps = 24/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR------LKFMRLA 70
           + + I H+I +P+  I  ++ ++  +   ED   ++I                L F    
Sbjct: 274 MAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEVIEQVNRLDKTVNDLLF---- 329

Query: 71  FGYTGS-VDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-SRERAKILLN 121
           FG       +   L D+ +         +    ++KR+++      + +  ++  +++LN
Sbjct: 330 FGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPLPLVFVDPKQVQQVVLN 389

Query: 122 LFMVAHASL-PRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT-QIVDGNVESTID 177
           L + A  ++   GG +T++  + + +      +++       PE    +I      +   
Sbjct: 390 LILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGIPEPIISKIFTPFFTTKAQ 449

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L  ++   L    + +   V S  L 
Sbjct: 450 GTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 486


>gi|171915577|ref|ZP_02931047.1| sensory histidine kinase CreC [Verrucomicrobium spinosum DSM 4136]
          Length = 484

 Score = 38.3 bits (88), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 41/163 (25%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV------ 77
           H++ SP+ AI  + ELL E  + +E              R KF+R   G +  +      
Sbjct: 272 HELKSPVAAIRGAAELLQEGTMPEEQ-------------RRKFLRNIHGESLRLQDLLDR 318

Query: 78  ---------------DSLIGLGDI-EQVIEDF--IAVDKRVQVS-WTGEKIDLSRERAKI 118
                           S++ L  I  +V E F  + V  R+++  W  + +++  +   +
Sbjct: 319 LLALAGLEKKKALDETSIVDLSVICREVCEHFEPMLVQNRLRLDHWIQDDVEVRGDTFLL 378

Query: 119 ---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              L+NL   A    P GG ++I ++   +   F ++ +G   
Sbjct: 379 HTALINLVQNAVDFSPEGGLISIGLKVVDDRACFIVEDDGPGL 421


>gi|254505792|ref|ZP_05117938.1| two-component system sensor histidine kinase [Vibrio
           parahaemolyticus 16]
 gi|219551445|gb|EED28424.1| two-component system sensor histidine kinase [Vibrio
           parahaemolyticus 16]
          Length = 478

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 34/183 (18%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLKFMRLAFGYTGSVD 78
           I HD+ +PI  +    E+LD+    +   +L   + L    A+  +K           + 
Sbjct: 283 ISHDLKTPIACLKLRAEMLDDDTDRERFTRLANDLDLMVKGALQCIK--------ETDIH 334

Query: 79  SLIGLGDIEQVIEDFIAV----DKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132
             I   D  Q+IE          +R+Q+  + E     +  A  + + NL      +L  
Sbjct: 335 EEIEPIDFNQLIEHIATTVTPETERIQIQGSIESAVAGKPLAIKRCIQNLV---DNALKY 391

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
           G KV I + DS +     +  +G                 +  I     Q YY      E
Sbjct: 392 GDKVNIQLFDSADAVNIVIDDHGEGV--------------DEAILDKLCQPYYRANKTQE 437

Query: 193 NKI 195
              
Sbjct: 438 GSG 440


>gi|115524257|ref|YP_781168.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115518204|gb|ABJ06188.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 708

 Score = 38.3 bits (88), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 46  EDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +D  + +I  +           L F R           ++ L +  +   D +    +  
Sbjct: 373 DDRALDMIDSAVAKGTGLTRQLLSFSR----RNPMAAKVVDLTETVERFGDVLRQSVQSN 428

Query: 102 VSWTGEKIDLSRERAKI--------LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
           +    E        A+I        LLNL + A  ++P GG++TIS+         + ++
Sbjct: 429 IVIEIEHPAQP-VAARIDPNEFEIALLNLTLNARDAMPEGGRITISIDRQTLPPRGAGEL 487

Query: 154 NGNLARF 160
           +G +A  
Sbjct: 488 SGEVAVL 494


>gi|330949870|gb|EGH50130.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae Cit 7]
          Length = 394

 Score = 38.3 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+   
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGQRASQLVDDVLDFARGRMGH--- 239

Query: 77  VDSLIGLGDIE---QVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125
               + + +     + +E  I+  +RV             E+I    ER A++L NL   
Sbjct: 240 -GIPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSDIGVLERIRCDHERIAQLLSNLV-- 296

Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179
              ++  G  +  + V    +  +F L +       PE     +       I        
Sbjct: 297 -SNAISHGDAESPVEVTAGVHGELFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  Y    +A  +   L      +   V +  + 
Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390


>gi|149926099|ref|ZP_01914362.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105]
 gi|149825387|gb|EDM84598.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105]
          Length = 1652

 Score = 38.3 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 23/177 (12%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDI---ISPIGA-----IHNSLELLDEVGIEDEVM 50
            + +     L    L AL  +   I HDI   ISP+       + + + L +    + + +
Sbjct: 1266 LQRTQQLVLQQERLRALAEMAGGIAHDINNAISPVALYTDALLGSEVNLSERGRKQLQTI 1325

Query: 51   QL-IRLSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQV------IEDFIAVDK 98
            QL I   + +     +F R     +               ++ +       + + I++D 
Sbjct: 1326 QLAIDDVARTVDRMGQFSRRQEEGVELTRVDPTQVCEQAMELTKARWHDIPLRNGISIDF 1385

Query: 99   RVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
            +++       ID S    +  L NL   A  ++P+GG +T+S +  KN +   + I 
Sbjct: 1386 KLEFGENVPDIDASEPELREALTNLIFNAVDAMPKGGAITLSTRLDKNSDHDQVVIE 1442


>gi|56415999|ref|YP_153074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364926|ref|YP_002144563.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130256|gb|AAV79762.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096403|emb|CAR62008.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 465

 Score = 38.3 bits (88), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|296534346|ref|ZP_06896813.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296265327|gb|EFH11485.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 368

 Score = 38.0 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 13/147 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD+ + +  + +   +L     + E+++ +      A  R        L F R     
Sbjct: 153 IAHDMNNVLQTVVSGTRVLAAQAGDPEMVRRLAGLMGEAAERGMAIGRRLLSFARPGELR 212

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAK-ILLNLFMVAHA 128
               D    L ++  ++ D +    +V+V+ T    ++     R++ + +LLNL + A  
Sbjct: 213 ASHADIAAILEELRGMLSDMLGSRIQVRVAETPAPGEVGVFVDRQQLETVLLNLAVNARD 272

Query: 129 SLPRGGKVTISVQDSKNENIFSLKING 155
           ++P+GG++T+S + +           G
Sbjct: 273 AMPQGGEITLSARRAAGPEGEPAVALG 299


>gi|288937247|ref|YP_003441306.1| integral membrane sensor signal transduction histidine kinase
           [Klebsiella variicola At-22]
 gi|288891956|gb|ADC60274.1| integral membrane sensor signal transduction histidine kinase
           [Klebsiella variicola At-22]
          Length = 474

 Score = 38.0 bits (87), Expect = 0.81,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 29/209 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70
           H++ SP+ AI  + E+L E    +               MQL+    +    RL+  RL 
Sbjct: 265 HELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322

Query: 71  FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
                     + +  + Q +    D     K + + W    + ++ +    A+ L NL  
Sbjct: 323 I-----KQQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181
            A    P+GG++ ++ +    E   S+  NG           F +      E    S  +
Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +V  +A  +   +      +  VV +
Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466


>gi|116748271|ref|YP_844958.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697335|gb|ABK16523.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 514

 Score = 38.0 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            E I    +  + LLNL   A  ++P GG V +  +     N   L++       P   T
Sbjct: 389 PEMIGDPGQLLQCLLNLIFNAVEAMPDGGTVKVGTRFDSATNEIRLEVTDQGIGIPADLT 448


>gi|329765880|ref|ZP_08257446.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137723|gb|EGG41993.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 487

 Score = 38.0 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 66/163 (40%), Gaps = 17/163 (10%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAI- 61
           ++ +  L  +  + +++ HD+ +P+  I N  EL +    E+   + M+ I+ +      
Sbjct: 277 SVKNEKLALIGDMTAKLSHDLRNPLTIIKNGFELFELGLPEEKRKDNMKRIQNAVDRISY 336

Query: 62  ---IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + F+R            I L  I  +  + I + + +++      I ++ +R +I
Sbjct: 337 EIEAIMNFVR----DNPLHKEQISLRRIIDITIENIEIPEGIKIEKEIPDITINVDREQI 392

Query: 119 L---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           L    N+ + A  ++ + GK+TI  +            +G   
Sbjct: 393 LRVFSNIIINAIDAM-KNGKITIIAKSKTKTIEIEFTDSGPGI 434


>gi|283851971|ref|ZP_06369247.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp.
           FW1012B]
 gi|283572695|gb|EFC20679.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp.
           FW1012B]
          Length = 896

 Score = 38.0 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 75/212 (35%), Gaps = 23/212 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----SAIIRLK----- 65
            ALL S + HD  +P+ AI  S E L  +G  +     +R S      +   RL+     
Sbjct: 667 AALL-STVTHDFKTPLAAIAGSAESLLALG--EATTATVRRSLEENIVAEASRLERLVDN 723

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERA--- 116
            +R+A   +GSV   I    IE+V+   +           V++    +   +  +     
Sbjct: 724 LLRIAALESGSVAPDIKPIPIEEVVGSALTRLEGLLVGHEVRLDIPDDLPPIPMDEVLME 783

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDGNVES 174
           ++L+NL   A    P G ++ +       + + ++   G       PEK  +       +
Sbjct: 784 QVLINLLENAAKHTPPGTEIRVGAAVRGRQALVTVSDTGPGLPPGDPEKLFERFQRGDRA 843

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +   + +       +   +   +  +      
Sbjct: 844 SAAGYGLGLAICRAVVKAHGGTITADQTGGQT 875


>gi|205360803|ref|ZP_02686544.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205346982|gb|EDZ33613.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 465

 Score = 38.0 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|200387245|ref|ZP_03213857.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604343|gb|EDZ02888.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 465

 Score = 38.0 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|39998007|ref|NP_953958.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984952|gb|AAR36308.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 487

 Score = 38.0 bits (87), Expect = 0.82,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 78/217 (35%), Gaps = 24/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIR------LKFMRLA 70
           + + I H+I +P+  I  ++ ++  +   ED   ++I                L F    
Sbjct: 265 MAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEVIEQVNRLDKTVNDLLF---- 320

Query: 71  FGYTGS-VDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDL-SRERAKILLN 121
           FG       +   L D+ +         +    ++KR+++      + +  ++  +++LN
Sbjct: 321 FGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPLPLVFVDPKQVQQVVLN 380

Query: 122 LFMVAHASL-PRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT-QIVDGNVESTID 177
           L + A  ++   GG +T++  + + +      +++       PE    +I      +   
Sbjct: 381 LILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGIPEPIISKIFTPFFTTKAQ 440

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L  ++   L    + +   V S  L 
Sbjct: 441 GTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 477


>gi|330819648|ref|YP_004348510.1| sensory histidine kinase [Burkholderia gladioli BSR3]
 gi|327371643|gb|AEA62998.1| sensory histidine kinase [Burkholderia gladioli BSR3]
          Length = 434

 Score = 38.0 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 13/153 (8%)

Query: 24  HDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII---RLKFMRLAFGYTGS 76
           H++ SP+ A+    E L+         + V+ L R  +  + +    L F R+      +
Sbjct: 226 HELRSPLTALSLQAERLEPLTLATPAHERVLALRRGLARGSALVEQLLNFARVQDAPDTA 285

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRE-RAKILL-NLFMVAHASL 130
              L        V+ED + +  R ++        E   L+R    ++L+ NL   A    
Sbjct: 286 DQRLSVAQQCRAVLEDLMPLADRKRIDIGVVALDEGEVLARPLDLRMLVRNLVDNAIRYT 345

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           P GG++ ++V+  ++    S+  +G      E+
Sbjct: 346 PEGGRIDLAVRAGEDRVELSVADSGPGIAPAER 378


>gi|317487187|ref|ZP_07945988.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316921588|gb|EFV42873.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 568

 Score = 38.0 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
             +++   R + + +LLNL + A  ++P+GG +++ +     +    LK  G
Sbjct: 458 EDDRVLGERSQIRQVLLNLGLNAMDAMPQGGTLSVRLYAEGGQIRIELKDTG 509


>gi|71735693|ref|YP_273447.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556246|gb|AAZ35457.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 486

 Score = 38.0 bits (87), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 284 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 334

Query: 72  GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +++        +  D RV      +     +  A  + + NL 
Sbjct: 335 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D+    +  +   G     PE+  + V       +  +  Q 
Sbjct: 393 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 446

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + +  + ++  L +
Sbjct: 447 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 483


>gi|330890494|gb|EGH23155.1| sensor histidine kinase [Pseudomonas syringae pv. mori str. 301020]
          Length = 459

 Score = 38.0 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 257 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 307

Query: 72  GYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +++        +  D RV      +     +  A  + + NL 
Sbjct: 308 --DTDIHENIEPVDLNALLDCLVEPWLNVEGDGRVTQQGEAQAAYPGKPLALRRCMGNLI 365

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D+    +  +   G     PE+  + V       +  +  Q 
Sbjct: 366 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 419

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + +  + ++  L +
Sbjct: 420 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 456


>gi|329765160|ref|ZP_08256742.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138363|gb|EGG42617.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 358

 Score = 38.0 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 17/165 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS----SMSAIIRL 64
           +L+  L SRI HDI +P+  I  ++E    L      + + M  I  S    +      L
Sbjct: 150 ELIGELSSRIAHDIRNPLSVIRAAVENLKILYSIDDAKLKNMDKIDRSIDRITHQIEDVL 209

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--SRERAKILL-N 121
            F+R        +     L +I     D I +  +V+       I++   ++R  +++ N
Sbjct: 210 DFVR----SDTMMFEKYALSEILADALDSIHIPNKVRFELPKNDIEIMCDKKRISVVMVN 265

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           + +    ++   G + I   D+K   I  ++ +G+    P     
Sbjct: 266 IILNGIQAINENGNIKIRFNDAKKFAIIEIEDSGSG--IPNHIID 308


>gi|89901866|ref|YP_524337.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89346603|gb|ABD70806.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 490

 Score = 38.0 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 34/183 (18%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----------MQLIRL 55
           L S  + A+  L + I H+I +P+G + N++  L   G  D V           +  IR 
Sbjct: 263 LKSERMAAVGRLTASIAHEINNPLGGMLNAISTLKRHGNPDPVTQKTVSLLERGLSQIRE 322

Query: 56  SSMSA--IIRLKFMRLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKI-- 109
           +  +     ++K               +   D+E +  +    A  +   +SW       
Sbjct: 323 TVAALLVEAKVK------------SRPLDAADLEDIHILVTPAANKQGAHLSWVAALPHA 370

Query: 110 -DLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             L     + +L+NL + A  +  R G V + +  S+++ +  ++ +G     PE+  ++
Sbjct: 371 LSLPSTLVRQMLINLLLNAITAAGRDGLVAVRILASESQLVMVVENSG-RPLLPEQLARL 429

Query: 168 VDG 170
            + 
Sbjct: 430 FEP 432


>gi|32477631|ref|NP_870625.1| histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448185|emb|CAD77702.1| probable histidine kinase [Rhodopirellula baltica SH 1]
          Length = 497

 Score = 38.0 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 33/174 (18%)

Query: 24  HDIISPIGAIHNSLELLDEV------GIEDEVMQ-----------LIRLSSMSAIIRL-- 64
           HD+ SP+  I  ++E++ +         + E +Q           LI   S +  +R   
Sbjct: 49  HDLKSPLAGIAATMEVIRDGILGDVTPSQAEFLQAAMTQCEYIDSLIGELSRAERLRSGT 108

Query: 65  -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117
            +  R+A            + D   +    +  +K++ + W G + +            +
Sbjct: 109 PRVRRVA-------TKRTAIRDAVDLSTRSLLSNKQIDLHWDGAEPNSIDTLVDSTILSR 161

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +L NL + A  +   G  + I V+D  N  +    +         +  Q + G 
Sbjct: 162 LLTNLIINAERASKSGSPILIRVEDDLNRGVAVWSVIDRGRGISPQRLQQLSGT 215


>gi|46203570|ref|ZP_00051334.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 425

 Score = 38.0 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 23/157 (14%)

Query: 42  EVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQ--------V 89
           + G     +  IR ++  A       L F R            + L ++           
Sbjct: 198 DKGRMSRAVGNIREAAERAATLTQQLLSFAR----KQRLDGRTVNLNELVSEMKELAGRT 253

Query: 90  IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           + + + ++  +       +ID ++     LLN+ + A  ++P GG+VTI+ ++ ++    
Sbjct: 254 LGETVTIETDLAADLRLCRIDPTQAEV-ALLNVLINARDAMPEGGRVTITTRNEESG--- 309

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             + +G+        T    G + S + +  +  ++ 
Sbjct: 310 --RSDGSNRLVSVSVTDTGAG-IPSDVLARVMDPFFT 343


>gi|220906225|ref|YP_002481536.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219862836|gb|ACL43175.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 634

 Score = 38.0 bits (87), Expect = 0.84,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 18  LCSRICHDI---ISPI----GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----F 66
           L S I HD+   ++P+      +   LE LD+  ++  ++QL+  ++      +K    F
Sbjct: 268 LASGIAHDLNNILTPVLVTAQLLQVKLENLDDRSVK--MLQLLEANAKRGADLVKQVLSF 325

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123
            R   G    + +   + +I+Q+I +       ++V    +   +S    ++   L+N  
Sbjct: 326 ARGVEGKHTILQTKHLIREIQQIIRETFPKSIELEVEAPEQLWTVSGNATQLHQVLMNFC 385

Query: 124 MVAHASLPRGGKVTISVQD 142
           + +  ++P GG + IS Q+
Sbjct: 386 VNSRDAMPEGGVLKISAQN 404


>gi|116696286|ref|YP_841862.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530785|emb|CAJ97132.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 668

 Score = 38.0 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 70/217 (32%), Gaps = 26/217 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----IIRLKFMRLAFGY 73
           + H++ +P+ A+ N++E+++     D        +I              L   R+  G 
Sbjct: 314 LAHELRNPLAAVRNAVEVIELTPDADTRVRRCAGIIDRQLHQLERLVNDLLDVGRVTAGK 373

Query: 74  TGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125
                +     D+     + I     A  +R+ ++       +  + A++   LLNL   
Sbjct: 374 LKMELTPTSYNDVVTTSIEAIRPVLEAAGQRLVLALPASSPYVRADAARLGQVLLNLLSN 433

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSH 179
           A    PRGG V++ V       I ++   G         R  + F Q         +   
Sbjct: 434 AVKYTPRGGIVSVHVSVESARVITAVSDTGRGLAPAALDRIFDLFAQEAGAGSRGGL--- 490

Query: 180 DIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215
            I       +   +   +  +          + +L +
Sbjct: 491 GIGLALAKAVVEAHGGAIQADSGGAGKGSTFTVILPR 527


>gi|77464023|ref|YP_353527.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1]
 gi|77388441|gb|ABA79626.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides 2.4.1]
          Length = 766

 Score = 38.0 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73
           I HD  + + AI    +LL      ++     L  I  ++  A       L F R     
Sbjct: 403 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 458

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126
                  I L ++   +   +     +RV +  +            R+  ++L+NL + A
Sbjct: 459 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 518

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182
             ++P GG + I  +D               A  P ++  I   +    I    +Q    
Sbjct: 519 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 575

Query: 183 -FYYVILLAHENKIRLLP 199
            F+    +     + L  
Sbjct: 576 PFFTTKRVGEGTGLGLST 593


>gi|76666631|emb|CAJ31152.1| histidine protein kinase [uncultured sulfate-reducing bacterium]
          Length = 490

 Score = 38.0 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 19/154 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS----MSAIIRLKFMRL 69
           L + + H++ +P+  +  SLE +    D+  + +  + LI         +    L F R 
Sbjct: 271 LAAGVAHEVRNPLAGVLASLENMRANPDDREMAERYVDLIEDGLQRIEHTVRTLLDFSRE 330

Query: 70  AFGYTGSVDSLIGLGDIEQVIE--DFIAVDKRVQVSWTGEKIDLSRERA------KILLN 121
                 S++       +  V E   +      V+V +   +   ++  A      ++ LN
Sbjct: 331 ---QEISLEPTSINHSLRHVAELAAYKIRKAGVEVVFDLAEPGTAQVMADHFQMEQLFLN 387

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           L + A  ++P GG +T+  +    +   +++  G
Sbjct: 388 LVLNAVEAMPEGGVLTLRTRVKWGKVEVAVEDTG 421


>gi|126462868|ref|YP_001043982.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104532|gb|ABN77210.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
          Length = 770

 Score = 38.0 bits (87), Expect = 0.85,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73
           I HD  + + AI    +LL      ++     L  I  ++  A       L F R     
Sbjct: 407 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 462

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126
                  I L ++   +   +     +RV +  +            R+  ++L+NL + A
Sbjct: 463 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 522

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182
             ++P GG + I  +D               A  P ++  I   +    I    +Q    
Sbjct: 523 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 579

Query: 183 -FYYVILLAHENKIRLLP 199
            F+    +     + L  
Sbjct: 580 PFFTTKRVGEGTGLGLST 597


>gi|329894129|ref|ZP_08270114.1| Sensor histidine kinase [gamma proteobacterium IMCC3088]
 gi|328923301|gb|EGG30621.1| Sensor histidine kinase [gamma proteobacterium IMCC3088]
          Length = 719

 Score = 38.0 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 44/229 (19%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FG 72
           + SR+ H++ +P+  + +SLE LD         + I  S      R    RL+       
Sbjct: 501 MSSRLSHELRTPVAVVKSSLETLDMEQ------EGIGDSVYLQRAREGLDRLSSILTNMS 554

Query: 73  YTGSVDSLIGLGD---------IEQVIEDF-IAVDKR--------VQVSWTGEKIDLSRE 114
               ++  +   +         +E  I+ + +A   R         +V   G    L++ 
Sbjct: 555 EASRLEESLQQTENQDFNLVALLEGCIQGYRLAYPGREIHLVCAQAKVQLHGAPDLLAQL 614

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-IVDGNVE 173
             K++ N    A    P G  ++++++         +K  G     P+     + D  V 
Sbjct: 615 LDKLINNAMEFA----PEGTPISVTLEVRNQTAHIEVKNQGPE--LPDNMQGRLFDSMVS 668

Query: 174 STIDS-HDIQFYY------VILLAHENKIRLLPEIIDD-HNVVLSALLE 214
              +   + Q +         L+A  +K R+     DD   VV+  L+ 
Sbjct: 669 VRTNPGANQQPHLGLGLYIARLIAEFHKGRIEIANRDDTKGVVVRVLIP 717


>gi|189424217|ref|YP_001951394.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189420476|gb|ACD94874.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 491

 Score = 38.0 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 12/166 (7%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
           + S  L +L  + + + H++ +P+GAI+ S+  L  + G +   M++I+         ++
Sbjct: 263 VQSEKLASLGKIVAGVAHEVNNPLGAINASIYNLEQKSGNQLRNMEIIKQGVERIERIVR 322

Query: 66  ----FMRLA---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAK 117
               F R A        S        +  +V      V+   +        + L + + +
Sbjct: 323 QLSDFSRTASLELQPLASEGFFSECAEFSRVALKRFDVELVTEDRCAPALMLQLDKGKIQ 382

Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +LLNL   A  + P  G + +S Q +       ++  G+      
Sbjct: 383 QVLLNLLFNAAQASPLRGIIRLSAQLTPGYYQLEVEDQGSGIPPEA 428


>gi|114767714|ref|ZP_01446399.1| sensory box sensor histidine kianse/response regulator [Pelagibaca
           bermudensis HTCC2601]
 gi|114540286|gb|EAU43387.1| sensory box sensor histidine kianse/response regulator [Roseovarius
           sp. HTCC2601]
          Length = 594

 Score = 38.0 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78
           HD  + + AI    +LL    D+   +   +  I  ++  A   +  + LAF        
Sbjct: 233 HDFNNLLTAISGHCDLLMLRHDQGDPDYSDLVQISQNANRAAALVSQL-LAFSRKQTLRP 291

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLP 131
            L+ L +    +   +     +RV++    + +        R+  ++++NL + A  ++P
Sbjct: 292 ELLDLRETLSDLTHLLNRLVGERVELVLQHDPVLPKIRGDRRQLEQVMMNLVVNARDAMP 351

Query: 132 RGGKVTISVQ 141
            GG++ I  +
Sbjct: 352 DGGEIRIETE 361


>gi|260433982|ref|ZP_05787953.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417810|gb|EEX11069.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 453

 Score = 38.0 bits (87), Expect = 0.86,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 17/196 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSS------MSAIIRLKFMRLAFGY 73
           I HD+ SP+  +   +E L++ G    D  + + R +              +  R   G 
Sbjct: 242 IAHDLRSPLSRLKQRVEALNDPGISARDREIAIARATVEIDHVLRVLSQLTEISRAEAGL 301

Query: 74  TGSVDSLIGL----GDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRE-RAKILLNLFMVAH 127
                  + L     D  ++ E   A    R++V    E I   R   ++ L NL   A 
Sbjct: 302 GREQFETVDLCQLVKDAAELYEPVAADQGIRLEVVGRAEPIRGHRPLLSQALSNLLENAL 361

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHDIQFY 184
              P G  +TI ++D     + S++  G     A  P      V  +   +  S  +   
Sbjct: 362 RYAPEGSAITIELKDDGPFALLSVRDRGPGVPDAELPRLAMPFVTLDPARSDRSAGLGLA 421

Query: 185 YVILLAHENKIRLLPE 200
            V  +A  +       
Sbjct: 422 LVAAIARMHGGTFAAR 437


>gi|254464607|ref|ZP_05078018.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206685515|gb|EDZ45997.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 623

 Score = 38.0 bits (87), Expect = 0.87,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIR--LSSMSAIIRLKFMRL 69
           ++ A + S + HD  S +  I   ++  L+++G++ E  ++++  LS+     RL   R+
Sbjct: 286 EMAAQMTSGLAHDF-SNLLTIILGMQGKLEKMGLDGEAAEMVQGTLSAARRGGRL-LNRI 343

Query: 70  A--FGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LL 120
           A   G              LG+++ +    +     + +        L  +  K+   LL
Sbjct: 344 AEMTGQRTLRPQATNMHDLLGELKILASPSLPQGVGLSILDNMPDQVLLLDSGKLQDALL 403

Query: 121 NLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNL 157
           NL + A  +    G++T+S           ++   G  
Sbjct: 404 NLILNARDACGTSGQITVSAHAVGHTWVEITVTDTGPG 441


>gi|257142031|ref|ZP_05590293.1| two-component sensor kinase [Burkholderia thailandensis E264]
          Length = 389

 Score = 38.0 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91
           E +D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   
Sbjct: 190 EEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFTDIHEGLEATL 246

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     +  +L           ++++NL M A  ++   G +TI  +   +
Sbjct: 247 NVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGD 306

Query: 146 ENIFSLKING 155
               +++  G
Sbjct: 307 GVTIAIEDTG 316


>gi|224367690|ref|YP_002601853.1| CusS [Desulfobacterium autotrophicum HRM2]
 gi|223690406|gb|ACN13689.1| CusS [Desulfobacterium autotrophicum HRM2]
          Length = 555

 Score = 38.0 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 38/172 (22%), Positives = 64/172 (37%), Gaps = 28/172 (16%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQL--------IRL 55
            L +L  L S + H++ +P+    N+L       E L+E G E E +Q         I  
Sbjct: 323 KLASLGLLTSGLAHELNTPL---ANALLYTQIASEELNEAGCETEDIQARLSTVVEEIHQ 379

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            S      L F R +       D    L  +  +      V  ++ V    E+  + + R
Sbjct: 380 GSKIIRNLLDFSRHSTNDAQVADVNKTLTKLMGIAGPHC-VSGKIDVQTVLEEK-MPKAR 437

Query: 116 AK------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                   IL NL   A  ++P+GG + +  +  K   I  ++I  +    P
Sbjct: 438 VDASTLQSILTNLVANAIEAMPQGGVLKLKTRHVKVLRIIKIEIADSGPGIP 489


>gi|114771210|ref|ZP_01448630.1| C4-dicarboxylate transport sensor protein [alpha proteobacterium
           HTCC2255]
 gi|114548135|gb|EAU51022.1| C4-dicarboxylate transport sensor protein [alpha proteobacterium
           HTCC2255]
          Length = 601

 Score = 38.0 bits (87), Expect = 0.88,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 22/141 (15%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVM--QLIRLSSMSA 60
           + +  L AL  + + I H++  P+ A+     N  ++LD   IED  +   LI       
Sbjct: 369 VQAGKLKALGEISAGISHELNQPLAAMQNFSENGAKMLDLNKIEDARINFDLIGTQINRI 428

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGE--KIDLS 112
              +K +R AF         I   D+++VI++ +++ K      +V + W  E  +I + 
Sbjct: 429 TRIIKSLR-AF--ARKEKETIEAIDLQEVIKETLSLSKSRIDFEKVDIEWHPEDKEIMVM 485

Query: 113 RERAKI---LLNLFMVAHASL 130
               ++   ++NL   A  S+
Sbjct: 486 GGHVRLQQVVINLLTNAIDSM 506


>gi|255035393|ref|YP_003086014.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254948149|gb|ACT92849.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 710

 Score = 38.0 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 33/166 (19%)

Query: 24  HDIISPIGAIHNSLELL--DEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD+ +PI A+ +  ++L  D+V  E++ M    I+ S            LAFG  G +  
Sbjct: 502 HDLRNPIAAMVSGSDMLFWDQVPTEEQAMIIDAIQQSGQ----------LAFGLIGQILQ 551

Query: 80  LI-----------GLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERA-KILLNL 122
                         L +I +   D ++   R     +   +    + + RE+  ++  NL
Sbjct: 552 SSPDRKKIIKNHEDLAEIVRSCIDMLSYKGREKRQTIYYDYDEALVPVDREKIWRVFSNL 611

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              A    P    + + ++   +  + +++ +G     PE     +
Sbjct: 612 LSNAVKFSPVESAIQVKLRKKPDSMLLTIRDHGIG--IPEDLKGHI 655


>gi|153003674|ref|YP_001377999.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027247|gb|ABS25015.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 663

 Score = 38.0 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 19/215 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK-----FMRLAF 71
           + + HD+ +P+ +I  +   L+      E+  L+     S   A  R+       + LA 
Sbjct: 446 AEVSHDLRNPLSSIILAAAQLERSAGRSELPDLVGRRAASIRRAGDRMNHLVQDLLDLAR 505

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA-KILLNL 122
              G ++  +G     ++++D +          + RV+ +     +   RER  ++L NL
Sbjct: 506 AENGRLELDVGEHSARELVDDAVESIAPVVRERELRVRAAVEPLLVRCDRERVHRVLANL 565

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--KFTQIVDGNVESTIDSHD 180
              A    PR G V ++ +  +   +F++   G      E     +      ES      
Sbjct: 566 LSNAVKVSPRKGTVELTARQRERAVLFTVADEGPGISLDEQRHMFEHYWRGRESGAQGVG 625

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I    V  L   +  ++  + +       S  L +
Sbjct: 626 IGLSIVKTLVERHGGKVWVDSVPGAGARFSFTLPR 660


>gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
 gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 534

 Score = 38.0 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 25/218 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           I H++ +P+  I    ELL +         + + +  I  S       ++ +    G   
Sbjct: 315 ISHELRTPLTTIKGYAELLKDGTLGPVNDEQRDRLSRIDASVDRLTGIVESLSDLSGVAS 374

Query: 76  SVDS----LIGLGD-IEQVIED--FIAVDKRVQVSWTGE----KIDLSRERAK-ILLNLF 123
              +     + L + IE+V+    F+A  K+++++         I   R R + +LLN+ 
Sbjct: 375 RQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDVPLTLPMISADRSRIQQVLLNVL 434

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG------NVESTID 177
             A    P GG+++ISV+D  +  + +++  G      E    I  G       +     
Sbjct: 435 NNAIKYTPDGGQISISVRDECDHLLIAVRDTGIGI-PKEDIENIFSGFYHSGYKLSYEYK 493

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +       +   +  ++  +            L K
Sbjct: 494 GAGLGLAISRKIVESHGGKIWADSEPGKGSTFFISLPK 531


>gi|204931274|ref|ZP_03222034.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204319889|gb|EDZ05096.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 465

 Score = 38.0 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|167615455|ref|ZP_02384090.1| probable two-component sensor kinase [Burkholderia thailandensis
           Bt4]
          Length = 389

 Score = 38.0 bits (87), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91
           E +D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   
Sbjct: 190 EEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADIHEGLEATL 246

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     +  +L           ++++NL M A  ++   G +TI  +   +
Sbjct: 247 NVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGD 306

Query: 146 ENIFSLKING 155
               +++  G
Sbjct: 307 GVTIAIEDTG 316


>gi|289626863|ref|ZP_06459817.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649143|ref|ZP_06480486.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330867868|gb|EGH02577.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 468

 Score = 38.0 bits (87), Expect = 0.90,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEHMQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +++  +        D RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLDCLVEPWLNAEGDGRVTQQGEAQAAYPGKPLALRRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D+    +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + +  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLHLPR 465


>gi|332558897|ref|ZP_08413219.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332276609|gb|EGJ21924.1| multisensor hybrid histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 758

 Score = 38.0 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 27/198 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73
           I HD  + + AI    +LL      ++     L  I  ++  A       L F R     
Sbjct: 395 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 450

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126
                  I L ++   +   +     +RV +  +            R+  ++L+NL + A
Sbjct: 451 QTLKPERIDLQEVLADLTHLLNRLVGERVTLRLSHAPDLGPIRADKRQLEQVLMNLVVNA 510

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182
             ++P GG + I  +D               A  P ++  I   +    I    +Q    
Sbjct: 511 RDAMPEGGVIGIETEDLVLTEELR---RDRAAVPPGRYAAIHVRDEGVGIPPDRLQKIFE 567

Query: 183 -FYYVILLAHENKIRLLP 199
            F+    +     + L  
Sbjct: 568 PFFTTKRVGEGTGLGLST 585


>gi|302338876|ref|YP_003804082.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301636061|gb|ADK81488.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 391

 Score = 38.0 bits (87), Expect = 0.91,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 18/166 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLK 65
           L S  L  L    S I HDI +PI  +    +LL    GI  + M  IR     A    +
Sbjct: 169 LKSERLSTLGKFSSMILHDIRNPISVVKAYTDLLLISEGIPQKNMDYIRNIRFEAERLNQ 228

Query: 66  FM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113
                        RL  G        + L +  +    F +    + + +     +   +
Sbjct: 229 LANELLDYSRGEIRLDMGSVDLDGFFLRLEEWVR--RRFASRRCEITLRNGHQGPVIFDQ 286

Query: 114 ERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           ER  + L NL   A  ++  GG  +++ +D+    +F++   G   
Sbjct: 287 ERMFRALTNLSDNARKAMTMGGSFSLTAEDNDGWLLFTVSDTGEGM 332


>gi|182413154|ref|YP_001818220.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840368|gb|ACB74620.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1278

 Score = 38.0 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 19/132 (14%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73
            I HD  + +  I    ELL E  +     D  ++ I+ ++  A    +    F R    +
Sbjct: 918  IAHDFNNLLTVILGQGELLTEPELSATERDTAVRDIKSAAQRASNLTRQLLVFSR----H 973

Query: 74   TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126
                   + L ++   +   +     +RV +  +  +  L          ++LLNL + A
Sbjct: 974  QAMAPIALDLNEVVAGVIKLLRHMIGERVALESSLCEGPLATLADPGMLEQVLLNLAVNA 1033

Query: 127  HASLPRGGKVTI 138
              ++PRGG++++
Sbjct: 1034 RDAMPRGGRLSL 1045


>gi|192288925|ref|YP_001989530.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192282674|gb|ACE99054.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 1076

 Score = 38.0 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 14/178 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80
           I HD  + +  I  +++++ +   +   +  I      A  R  +  RL   +       
Sbjct: 686 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAELTRLLLAFARKQPLR 745

Query: 81  IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKID----LSRERAK-ILLNLFMVAHASL 130
               ++  ++          + + ++V            + R + +  L+NL + A  ++
Sbjct: 746 PDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAM 805

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFYYV 186
           P+GGK+TI   +   +     +  G+LA        I D    +  TI S     ++ 
Sbjct: 806 PKGGKLTIETSNVVVDPDLGKR-FGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFT 862


>gi|152998343|ref|YP_001343178.1| integral membrane sensor signal transduction histidine kinase
           [Marinomonas sp. MWYL1]
 gi|150839267|gb|ABR73243.1| integral membrane sensor signal transduction histidine kinase
           [Marinomonas sp. MWYL1]
          Length = 488

 Score = 38.0 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 34/200 (17%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           L  S I HD+ +PI  +    E+LDE  I D    +IR       + LK      G   S
Sbjct: 287 LFAS-ISHDLKTPITRLRLRAEMLDEDDIRD---AMIRD-LEDLDMLLK------GALQS 335

Query: 77  VDSLIGLGD------IEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA--KILLNLFM 124
           V     + +      I +++ D  +       ++ V    +   + +  A  + L NL  
Sbjct: 336 VKET-DIHENRVEVNISRMLRDMQSTANLHGVKLTVVGELQHPFIGKPFAIKRCLGNLV- 393

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDS 178
               +L  G   T+ ++D +NE    +   G            + +T++   +       
Sbjct: 394 --DNALYYGKTATVFIEDDENEVCIRVCDQGPGIPIDKMDKVFQPYTRL-TPDHSGHPGG 450

Query: 179 HDIQFYYVILLAHENKIRLL 198
             +       +A  +   + 
Sbjct: 451 MGLGLSIARNIARAHGGEVT 470


>gi|83717824|ref|YP_438930.1| sensory box sensor histidine kinase [Burkholderia thailandensis
           E264]
 gi|83651649|gb|ABC35713.1| sensory box sensor histidine kinase [Burkholderia thailandensis
           E264]
          Length = 358

 Score = 38.0 bits (87), Expect = 0.92,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 51/130 (39%), Gaps = 15/130 (11%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91
           E +D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   
Sbjct: 159 EEVDLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFTDIHEGLEATL 215

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     +  +L           ++++NL M A  ++   G +TI  +   +
Sbjct: 216 NVVRNELKYKAEVVKDYGELPAVECMPSQLNQVMMNLLMNAVQAIVERGTITIRTRREGD 275

Query: 146 ENIFSLKING 155
               +++  G
Sbjct: 276 GVTIAIEDTG 285


>gi|312959223|ref|ZP_07773741.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
 gi|311286483|gb|EFQ65046.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
          Length = 344

 Score = 38.0 bits (87), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 61/149 (40%), Gaps = 12/149 (8%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGS 76
           + H+I +P+G I  + +LL    D    +   ++ +I   S    +  +F+  A      
Sbjct: 129 LAHEIRNPLGIIKTATQLLHRRADLPDTDKRHLEYVISEVSRINDLITEFLDFAKPNPPL 188

Query: 77  VDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHAS 129
                    +E+++     +    +   Q+        +   +++  +  LNL + A  +
Sbjct: 189 RALQPARPLVEEILGFCAPELATHNIDAQIDDQAPGATIYADAKQLKQACLNLILNAIDA 248

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +P GG++T+ ++ +    + S+  +G   
Sbjct: 249 MPDGGRLTVGIRTADGNTVISIADSGQGI 277


>gi|153005248|ref|YP_001379573.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028821|gb|ABS26589.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 400

 Score = 38.0 bits (87), Expect = 0.94,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 27/223 (12%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSA----IIRL 64
            A L S + HD+ +P+ A+  +   +               + ++R  +          L
Sbjct: 163 AAFLAS-VAHDLRNPVSALKLTAAAIPPGTPLPPEPRLRRAVDVVRRQAAKLERMLNDLL 221

Query: 65  KFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAK 117
              R+  G        + L D +   +E F     R ++        +       R   +
Sbjct: 222 DTARIEAGEVEMRVERVDLRDLVRSALELFEGTSSRHRLVSEVPDHAVPVYCDPLRIE-Q 280

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGN 171
           +L NL   A    P GG+V  S++ SK E +  +  +G      +     E F +   GN
Sbjct: 281 VLANLLSNAIKYSPAGGEVRASLRTSKGEAVIQVADHGIGIAERDRTAIFEPFRR--TGN 338

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + S +    +  Y V  L   +   +    ++    + +  L 
Sbjct: 339 LRSAVAGAGLGLYVVRRLVEAHAGSISVASMEGVGTIFTVRLP 381


>gi|229171167|ref|ZP_04298761.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3]
 gi|228612345|gb|EEK69573.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3]
          Length = 670

 Score = 38.0 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 14/171 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65
           LS++DL+  + + I H+I +P+  +   L+LL E    +   +   L+      A   + 
Sbjct: 452 LSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDRANSIIT 511

Query: 66  FMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVD-----KRVQVS-WTGEKIDLSRERAK- 117
              L+ G T   D  ++ L  I   I   I +D     K +QV      ++ L+R   + 
Sbjct: 512 EF-LSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNRNEIRQ 570

Query: 118 ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167
           +L+NL+     ++  G  +TIS  ++ +N  + +++  G   R PE   ++
Sbjct: 571 LLMNLYRNGLEAMSTGKTLTISTYKEGRNCVVLAVRDQGKGIR-PEVLEKL 620


>gi|116626897|ref|YP_829053.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116230059|gb|ABJ88768.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 578

 Score = 38.0 bits (87), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 72/209 (34%), Gaps = 18/209 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQLIRLSS--MSAIIRL- 64
           L  R+ H++ +P+  +  ++E +           +    +    L+   +     + R  
Sbjct: 367 LARRLAHELKNPLFPLQITVENMQRARDRYPEQFDEVFREGTTTLLAELAQLKQIVGRFS 426

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILL 120
            F R+      +VD    + +  ++ E  +A  +  +V     ++        +  ++L 
Sbjct: 427 DFARMPTPEIQAVDFHALITETLKLFEGQLAQARVREVIELDPRVGRVNADPEQMTRVLR 486

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL + A  ++P GG +T+  +         +   G     PE+  ++      +      
Sbjct: 487 NLILNAIDAMPEGGTLTVRTKALDGRMRLEISDTGQGL-TPEECDRLFTPYYTTKTHGTG 545

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +    V  +  ++  R+  E         
Sbjct: 546 LGLAIVQSVVSDHGGRISVESEKGKGATF 574


>gi|120556591|ref|YP_960942.1| integral membrane sensor signal transduction histidine kinase
           [Marinobacter aquaeolei VT8]
 gi|120326440|gb|ABM20755.1| integral membrane sensor signal transduction histidine kinase
           [Marinobacter aquaeolei VT8]
          Length = 678

 Score = 38.0 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 68/197 (34%), Gaps = 18/197 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           R+ H++ +P+  + +SLE L +   E+E  Q +   + +A  RL+ +  +      ++  
Sbjct: 456 RLSHELKTPVAVVRSSLENLAQGVAENERQQYLER-AATATERLRRILHSMSEAARLEQS 514

Query: 81  IGLGD---------IEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVA 126
               +         + +    +  +D   ++ ++G   D           ++L  L   A
Sbjct: 515 FEDTEKEPFDLARVLAEATSAYQQLDTGHRIVYSGPTSDCVMNGSPEMLVQMLDKLVDNA 574

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--QIVDGNVESTIDSHDIQFY 184
               P GG + + +       +  +   G+     +                D H  Q  
Sbjct: 575 RDFTPEGGGIDVCLHIHDGHYLIEVFNEGSRLPDHDGVDIFGAFVSQRSGAHDGHLGQGL 634

Query: 185 Y-VILLAHENKIRLLPE 200
             V L+A  +  R+   
Sbjct: 635 LIVRLIADYHGGRVEAR 651


>gi|218675385|ref|ZP_03525054.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium etli GR56]
          Length = 694

 Score = 38.0 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + I      A  R + +  +    GS    
Sbjct: 486 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 544

Query: 81  IGLG-DIEQVIEDF-----IAVDKR--VQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
                D+  ++        IA+  +  +++        +S + A +   +LNL + A A+
Sbjct: 545 YPSPVDVASLLRGMADILEIAIGAKCHIKLDLDAGLPVVSLDAALLEQSVLNLCLNASAA 604

Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155
           +P GG + I     +++ + S+  +G
Sbjct: 605 MPTGGVIAIGATAKEDKLLISVTDSG 630


>gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 789

 Score = 38.0 bits (87), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 10/123 (8%)

Query: 102 VSWTGEKI-----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING- 155
           + W             R   +IL NL   A    P GG+VT+     +N  +F ++  G 
Sbjct: 525 LDWQVPTPKDRFQADPRRLRQILFNLLGNAIKFTPAGGQVTLRGWREQNRAVFQIEDTGI 584

Query: 156 --NLARFPEKFT--QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                + P  F   Q ++   + T +   +       L   +   +  E       + + 
Sbjct: 585 GIPQEQIPLMFQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTIDVESTVGKGSIFTV 644

Query: 212 LLE 214
            + 
Sbjct: 645 RVP 647


>gi|325108930|ref|YP_004269998.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324969198|gb|ADY59976.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1628

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 64/159 (40%), Gaps = 23/159 (14%)

Query: 13   DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFM 67
            + +A+L     H++ +P+  I + L+LL     ED+ + L     +          L   
Sbjct: 1238 EFLAMLA----HELRNPLAPIRSGLDLLTLESKEDQPVLLVMKEQVEHLVRLVDDLLDVS 1293

Query: 68   RLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDL-----SRERA 116
            R+     G +D      +++++IE  +        +K+  ++ +  +  L          
Sbjct: 1294 RI---MRGKIDLRKKTTELKEIIERAVEAVRWTFDEKQQTLTVSVPEESLPIFVDPVRLV 1350

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +++ NL   A      GG + + V+ +++E    +  NG
Sbjct: 1351 QVVSNLLNNASKYTDPGGNIDLKVEKAEDEVRVRVLDNG 1389


>gi|254523393|ref|ZP_05135448.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219720984|gb|EED39509.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 377

 Score = 38.0 bits (87), Expect = 0.97,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 11  SMDLVALLCSRICHDIISPIGAI-----HNSLELLDEVGIEDEVMQLIRLS----SMSAI 61
           ++ L   + + + HD+ +P+ AI       +LEL ++     + +Q +  S    +    
Sbjct: 152 ALKLNETMAAVLTHDLRTPLSAILLCADKLALELPEDNAGAQQTLQHLEASTLRMARMVE 211

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRERAKI 118
             L F R+  G      S   L ++   +          +R++         L  +  ++
Sbjct: 212 QLLDFSRIRSGGLRLETSACDLAEVTHAVIAEAGSAHGHERIRFD-AIGDTRLQGDMDRL 270

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
                 +   +L  G +  + + D ++     ++++           ++ +    S   S
Sbjct: 271 GQIAANLVGNALTHGSEALVQL-DGRDARTVVMRVSNTGHIDDALLPRLFEPFKASFHQS 329

Query: 179 H--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +  Y V      +  R+         VV  A L +
Sbjct: 330 KGLGLGLYIVDQFVRAHGGRIGARNEAGQ-VVFEAKLPR 367


>gi|281355653|ref|ZP_06242147.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
 gi|281318533|gb|EFB02553.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
          Length = 546

 Score = 38.0 bits (87), Expect = 0.98,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 16/210 (7%)

Query: 22  ICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           I HD+ +PI  I    EL  L+     +    +    +    +    + +    +G    
Sbjct: 327 IAHDLRTPITRIRGKAELAVLNPEDSSELAGDVAEECAEMLTMINTMLEITQTESGIAQD 386

Query: 80  LIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSR--ERAK---ILLNLFMVAHA 128
                D+  +    +      A DK + +        LS    + K   +L NL   A  
Sbjct: 387 DFDDLDLTALTAAVLELFSTVAEDKGITLHQELPAQPLSACGNKVKYQRLLANLLDNAIK 446

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
             P GG V++ ++   +E    +   G       +   F +    +   ++  + +    
Sbjct: 447 FTPSGGTVSVRLEPGDSEFTLRISDTGCGIPPEARSHIFERFYRSDSSRSLPGNGLGLSL 506

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           V  +       +  E   +        L +
Sbjct: 507 VKAIVSVAGGTIEVESEVNRGTTFLVTLPR 536


>gi|283852334|ref|ZP_06369605.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572291|gb|EFC20280.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 480

 Score = 38.0 bits (87), Expect = 0.99,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 28/229 (12%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGI--EDEVMQLIRLSSMSA--- 60
           L +  + AL    + + H++ +PI  I  +++ LL++     +D+  +L+   +  A   
Sbjct: 240 LQARKMAALGTFTAGVAHELNNPINNITLTVDALLEDHADYLDDDGRELVADIAGQADRA 299

Query: 61  ----IIRLKFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                  L F R          A     S  +L+      Q++   +AV  +VQ      
Sbjct: 300 ADIVRNLLDFSRTERPPLLPLAARDVAASSLALVR----NQLLGAGLAVAMQVQEDLPPI 355

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           + DL R   ++L+N+ + A  + PRGG+VT+SV   +N        +      PE    +
Sbjct: 356 RGDL-RSLQQVLVNILLNAVQATPRGGRVTLSVAAGENGETCFAVADSGPGVSPEVRQHM 414

Query: 168 VDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +     +       +       L   +  R+  E  +    V +  L 
Sbjct: 415 FEPFYTTKGVGKGTGLGLAVAYSLTRRHGGRIEVESPETGGAVFTVCLP 463


>gi|70730899|ref|YP_260640.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345198|gb|AAY92804.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 642

 Score = 38.0 bits (87), Expect = 1.00,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 19/144 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + +  I  +LELL +   +D  ++ +  +++    R        L F R     
Sbjct: 288 IAHDFNNLLTVIRGNLELLHKRVGDDPRLRRLLDNALQGTERGVTLTQRMLAFAR----R 343

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKI------LLNLFMVA 126
                  + LG +   +   +      +++   E   DL   +A +      LLNL   A
Sbjct: 344 QELKSQALDLGQLVASLSGLLCSSVGPRIALRVEMAPDLPAVQADLNQLELALLNLVSNA 403

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P GG + I  Q        +
Sbjct: 404 RDAMPEGGSILIEAQLRGATGNLA 427


>gi|254425827|ref|ZP_05039544.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188250|gb|EDX83215.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 708

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 79/198 (39%), Gaps = 35/198 (17%)

Query: 24  HDI---ISPIGAIHNSLEL-LDEVGIE-DEVMQLIRLSSMSAIIRLK----FMRLAFGYT 74
           HD+   ++PI  I   L L L++V     E + ++  S+      ++    F +      
Sbjct: 473 HDLSNILTPILGIAQLLRLTLNDVDTSTQEQLDILEQSAKRGAKMVRQILTFAKGDLDPQ 532

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERA-------KILLNLFMV 125
            + D ++ L ++  V +        ++     E+    L RE A       ++ +NL + 
Sbjct: 533 TTADVIVLLQEVINVAQQGFPDSIEIRFDIPTEEDIDRLHREVAIDSTRLHQVFMNLCVN 592

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  ++  GG +T+S+            I+ N A   +   +++ G     +  H     Y
Sbjct: 593 ARDAMVEGGVLTVSID----------TIDVNEASINK--DEVITGKDIEMLAGH-----Y 635

Query: 186 VILLAHENKIRLLPEIID 203
           +++   +  + + PE+ D
Sbjct: 636 IVVTVADTGVGIAPEVRD 653


>gi|170723372|ref|YP_001751060.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida W619]
 gi|169761375|gb|ACA74691.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida W619]
          Length = 484

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 76/211 (36%), Gaps = 24/211 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           + L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K   +
Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERMQAKFSQDLDELELL---VKGALQCVKDTDI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
                      + L  + +++ +    D R+ V          +  A  + + NL     
Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFY 184
            ++  G +  + + DS    +  +  +G      R  + F       +      + +   
Sbjct: 393 NAIKYGKRARLRIIDSAEGFVLQVDDHGPGVPQQRLEQVFEPHF--RLAGQQQGYGLGLG 450

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +AH +   +    + +  + ++  L +
Sbjct: 451 IARNIAHSHGGEVSLLNLREGGLRVTLHLPR 481


>gi|66576246|gb|AAM72605.2| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 358

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 70/158 (44%), Gaps = 23/158 (14%)

Query: 22  ICHDI---ISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           I HD+   ++P+       E+L     E     + +++I  +++ A   ++ + LAF   
Sbjct: 5   IAHDLNNLLTPVLGYS---EMLSNSFPETDKRHKRIEVIHHAALRARGLVQQL-LAFSSR 60

Query: 75  GSVD-SLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126
            +++  ++ L     D EQ++   I  D  ++      ++ +  +  +I   ++NL + A
Sbjct: 61  QTLEFRMLDLNRVVRDFEQLLRRTIRDDINIRYHLHDGRLVIQGDVGQIKQIIMNLAVNA 120

Query: 127 HASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
             ++P GG++T+     V     E  F    +G+ A  
Sbjct: 121 EDAMPSGGELTVKTSTMVIGKGQEKYFEGLPSGDYAVL 158


>gi|87198057|ref|YP_495314.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87133738|gb|ABD24480.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 450

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSV 77
           I HD+ +P+  +  + +L+D+  I      LI  S+      L    +++R A       
Sbjct: 249 ISHDLRTPLSRVMIAADLVDDAEIAG----LIHDSTAEMEAMLMSLQQYLR-AQHLAADP 303

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
           +++     I  +++   A   R ++        +   R  +LL L  +   ++  GGK  
Sbjct: 304 EAMDLGVAIADLLQG--AFPGRTELI-VAPHAVVRTWREPLLLALRPLVENAVQHGGKAR 360

Query: 138 ISVQDSKNENIFSLKINGNLARFPE 162
           ++V     E  +++ I  N    PE
Sbjct: 361 VTVA-PDAEGHWTVTIADNGPGIPE 384


>gi|325661562|ref|ZP_08150186.1| hypothetical protein HMPREF0490_00920 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472089|gb|EGC75303.1| hypothetical protein HMPREF0490_00920 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 343

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQ 166
           SR  ++ L NL   A    P GG + ++VQD +     ++   G     PE      F +
Sbjct: 236 SRWTSEALFNLLDNAVKYTPEGGDIHVTVQDWEMYLEIAVTDTGRG--IPESVQATIFKR 293

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +D   I  Y    +       +  E         S  L +
Sbjct: 294 FYREEAVHDVDGIGIGLYLAREIITMQGGYITVESEVGKGSTFSIFLPQ 342


>gi|71737382|ref|YP_273735.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71557935|gb|AAZ37146.1| sensor histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320325409|gb|EFW81474.1| sensor histidine kinase [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 394

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMVAHA 128
             S+     +++ +E  ++  +RV             E+I    ER A++L NL      
Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLV---SN 298

Query: 129 SLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQ 182
           ++  G  +  + V      ++F L +       PE     +       I         + 
Sbjct: 299 AISHGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDEPQAGLGLG 358

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y    +A  +   L      +   V +  + 
Sbjct: 359 LYIASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390


>gi|39995481|ref|NP_951432.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982244|gb|AAR33705.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 500

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 96  VDKRVQVSWTGEKIDLS-RERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
            ++R+ V+          R   ++L     N    A  ++P GG +T+     +    F 
Sbjct: 373 DEQRIAVATEIPPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFH 432

Query: 151 LKINGNLARFPEK-FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           L         P +   +I      S      +       +  E+   +L E         
Sbjct: 433 LTFTDQGVGIPPEDLPKIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTF 492

Query: 210 SALL 213
           + +L
Sbjct: 493 TVIL 496


>gi|148265388|ref|YP_001232094.1| histidine kinase [Geobacter uraniireducens Rf4]
 gi|146398888|gb|ABQ27521.1| histidine kinase [Geobacter uraniireducens Rf4]
          Length = 249

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 77/205 (37%), Gaps = 25/205 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
           + + FN    +L  +L + + H++ SP+  I ++ ++ L E  + + V +++    + A 
Sbjct: 21  EQLAFNEKMAELG-MLSTGMVHELNSPLSVIVSAAQMILREEDLPEFVKEMVERIGLEAQ 79

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRV-----QVSWTGEKIDL 111
               F R    +    +++    D+  V+++ +A       KR      +  +    I  
Sbjct: 80  RLSYFTRSLLSFARKEEAVEAEADVNLVLQEVMAFLKYEAQKRSISVIEEKDYGLPPIAA 139

Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              R K +  NL M A  ++  GG + +    + +      ++                G
Sbjct: 140 DGNRLKQVFINLIMNALQAMEEGGTLLLKTALTDDGRFLEAQVADTGR-----------G 188

Query: 171 NVESTIDSHDIQFYYVILLAHENKI 195
                ++ H  + +Y   +A E   
Sbjct: 189 IAAEAVE-HIFEPFYTTKVAGEGTG 212


>gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 456

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 68/215 (31%), Gaps = 23/215 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAII----RLKFMRLAFGY 73
           HD+ +P+G ++  ++LL +         + EVM ++   +          L    +  G 
Sbjct: 230 HDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVAERMSALVEDLLDVSAIESGQ 289

Query: 74  TGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                  + L    Q     +  IA  K +++     +        SR   ++L NL   
Sbjct: 290 LELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPLPTVAVDSRRLGQVLDNLIAN 349

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182
           A    PR   +T+  +        S+   G      E    F     G+   T D     
Sbjct: 350 AVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQLFQPFRRGSNAPTADEKSTG 409

Query: 183 FYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215
               I+  L   +  ++  +         +  L +
Sbjct: 410 LGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPR 444


>gi|302338223|ref|YP_003803429.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635408|gb|ADK80835.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 387

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 63/165 (38%), Gaps = 25/165 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAI 61
           +L +L  L + + H+I +P+G+I   ++L+      D  +          ++        
Sbjct: 154 NLASLTTLAAGVAHEIKNPLGSIGIHIQLMQRSLDRDGCLDREHGLEYLDIMEEEVERLN 213

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQV-----SWTGEKID 110
             +     A      +++ +   D+  VI D +        +  VQV         +   
Sbjct: 214 GIVVDFLFA---VRPMNTELKQADVNAVIHDLLQFTKYELQEGGVQVVEEYDDGVPKVEL 270

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
             +   + LLN+   A A++P GG +T++     ++   ++   G
Sbjct: 271 DEKYLKQALLNIIKNAQAAMPDGGSLTVTTGFKDDQVTIAIADTG 315


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1014

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAF 71
           S + H+  +P+  +   LE +L    + +   + + +   +A   L+       F RL  
Sbjct: 375 SNVSHEFRTPLTLMLGPLEDVLASGTLPEAAARELDVVHRNATRLLRLVNTLLDFSRLEA 434

Query: 72  GYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLF 123
           G   +    + L      +   F +V +R  ++ T +   L            KI+LNL 
Sbjct: 435 GRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLL 494

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDS 178
             A       G +T+ ++    +    +   G        P  F +     G    T + 
Sbjct: 495 SNAFK-FTFQGTITVRLRARTGQAWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEG 553

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I    V  LA      +  E ++      + +L +
Sbjct: 554 TGIGLALVQDLARLQGGEVRVESVEGQGSCFTVVLPE 590


>gi|13471113|ref|NP_102682.1| robable sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
 gi|14021857|dbj|BAB48468.1| probable sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
          Length = 282

 Score = 38.0 bits (87), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 83  LGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTIS 139
           L   + V+ + ++   R+ +    +     + RE   + LLNL + A  ++P GG ++I+
Sbjct: 131 LEQFQVVLANVLSPSIRLTLHVAGSLPLAFIDRELVERALLNLVLNARDAMPAGGDISIA 190

Query: 140 VQ 141
             
Sbjct: 191 AA 192


>gi|94968839|ref|YP_590887.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550889|gb|ABF40813.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 553

 Score = 37.6 bits (86), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIH--NSLELLDEVGIEDEV---MQLIRLS 56
            +      ++ +L A   S + HD+ +P   I   + L L      ++     ++ I  S
Sbjct: 311 QRTAQLQEANQELEAFSYS-VSHDLRAPFRHISGFSDLLLRHLTNTDETTRHYVRTIAES 369

Query: 57  SMSAIIR----LKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSWTGEKI 109
           +  A       L F R+    + S    I +     +++V+ D +       + WT   +
Sbjct: 370 AQYAGALVDNLLAFSRM----SRSQLRWIPVDMNLLLKEVVRDVMREANGRVIHWTLPDL 425

Query: 110 DL---SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +        K+ + NL   A        +  + V   ++ N +   +  N   F EK+ 
Sbjct: 426 PIVFADGAMLKLAMRNLLANAVKYTRHKAEADVEVGVREHANEWEFWVKDNGVGFDEKYA 485

Query: 166 QIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + G  +        +   I    V  +   +  R+  E + D        L K
Sbjct: 486 DKLFGVFQRLHRMEEFEGTGIGLASVRRIVQRHGGRVWAEGVVDEGAAFYFTLPK 540


>gi|261419856|ref|YP_003253538.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319766670|ref|YP_004132171.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376313|gb|ACX79056.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317111536|gb|ADU94028.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 430

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 66/159 (41%), Gaps = 10/159 (6%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMSAII 62
             +  M +V+ + + I H+I +P+  +   ++LL       +   + IR        A  
Sbjct: 199 MKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEELERAEA 258

Query: 63  RLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRE---RA 116
            ++ ++  A       + +    ++++V++    +A    + VS + E   +        
Sbjct: 259 IIRDYLTFAKPAPKETEPIDVAVELQKVLQMITPMAHMHSIHVSSSLEHGVVIGNVQYFQ 318

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +  LNL   +  ++P GG + ++ ++     + ++  NG
Sbjct: 319 QCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNG 357


>gi|326319280|ref|YP_004236952.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323376116|gb|ADX48385.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 518

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 12/198 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           + HD+ SPI  +    E+L+   +  +    ++         L  +R A G  G   S+ 
Sbjct: 303 VSHDLRSPITRLRLRTEMLESDALRAKFRADLQEMESMVSATLDVLRGA-GTPGPRQSVD 361

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141
               +  +++D      +           L      +   L  +   +L   G V + ++
Sbjct: 362 IDALVGSLVQDLHESTGQAIPVHGMAHAPLPGYAQSLRRCLQNLLENALRYAGSVQVQIE 421

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFYY----VILLAHENKI 195
           D+  E   +++  G     P     +++     E + ++    F        ++A  +  
Sbjct: 422 DTARELAITVRDGGPGI-APAHLPHVLEPFYRAEGSRNAASGGFGLGLSIADMVARAHGG 480

Query: 196 RLL----PEIIDDHNVVL 209
           RL     PE   D  +VL
Sbjct: 481 RLELANRPEGGLDARLVL 498


>gi|170693035|ref|ZP_02884196.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
 gi|170142033|gb|EDT10200.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
          Length = 799

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 19/211 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYTGSV 77
           + HDI SP  AI   +E     G +    + + L    A   L    +F+ LA       
Sbjct: 585 LSHDIRSPQAAILALIEQRRHAGADLPESRFVELVGHYAQWSLSLADQFLLLA--RAEGR 642

Query: 78  DSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAH 127
                  D+  ++ D +      A  K+  V    E   L    A    +   NL   A 
Sbjct: 643 PPAASTVDLALLLGDAVDDLWPQASAKQTSVHLAAEPGMLVVADAPLLRRAFANLIDNAI 702

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFY 184
              PR   VT++  +       ++   G+       P  FT+      +     H +   
Sbjct: 703 KFSPRSATVTVTAGERGERWAVTVADTGSGIPADQIPNLFTEFFRLPSDHPATGHGLGLA 762

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +V  +       +  E    H  + + LL K
Sbjct: 763 FVKHVIDTLGGHIDVESEVGHGSLFTLLLPK 793


>gi|167892947|ref|ZP_02480349.1| sensor histidine kinase [Burkholderia pseudomallei 7894]
          Length = 257

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91
           +D   +  +++ LI  S   A+ R++        F R     +G   +   L    +   
Sbjct: 48  IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 102

Query: 92  DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     E   L        + +++ +NL + A  S+   G +TI      +
Sbjct: 103 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 162

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203
               S+   G      +   +I D    +            I   +   +  R+  E   
Sbjct: 163 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 221

Query: 204 DHNVVLSALLE 214
                L+  L 
Sbjct: 222 GRGSTLTVTLP 232


>gi|330863452|emb|CBX73571.1| sensor protein creC [Yersinia enterocolitica W22703]
          Length = 475

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLK--------FMRLAFGYT 74
           H++ SP+ AI  + ELL E        + LI         R++          RL     
Sbjct: 265 HELKSPLAAITGAAELLRESPPPATAQRFLIN--IEQQSARIQQLVDKMLIQARL----E 318

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124
             VD  +   +I  +I+  +   +   VS       +  + A          + L NL  
Sbjct: 319 SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTNLID 378

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            A    P GG+VT+S     +E + +++  G+  
Sbjct: 379 NALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGI 412


>gi|298504481|gb|ADI83204.1| sensor histidine kinase, HAMP domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 471

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 96  VDKRVQVSWTGEKIDLS-RERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
            ++R+ V+          R   ++L     N    A  ++P GG +T+     +    F 
Sbjct: 344 DEQRIAVATEIPPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFH 403

Query: 151 LKINGNLARFPEK-FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           L         P +   +I      S      +       +  E+   +L E         
Sbjct: 404 LTFTDQGVGIPPEDLPKIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTF 463

Query: 210 SALL 213
           + +L
Sbjct: 464 TVIL 467


>gi|239908052|ref|YP_002954793.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239797918|dbj|BAH76907.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 379

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 24  HDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMR-LAFGYTGSVDSL 80
           HDI++ +  +    EL+  +E G  +  + L+  +       ++  R L F   G  +  
Sbjct: 173 HDILNLVSGMQGVCELMREEEEGTRNAELDLLLFAVERVNDLIQAQRDLTFAERGDYEVA 232

Query: 81  IGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRERAKILLNLFMV-----AHAS 129
           +       ++ D  A+ +R        ++   E  D+     + LL   +V     A  +
Sbjct: 233 VNKMGSLSLLADITALMRRDSSCKGKNLAVAPESEDVFFASDRKLLTRILVNFQKNALEA 292

Query: 130 LPRGGKVTISVQDSKNENIFSLK 152
            P GG VT        +  F ++
Sbjct: 293 TPAGGVVTAGCDRQDGQVRFWVR 315


>gi|254466604|ref|ZP_05080015.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
 gi|206687512|gb|EDZ47994.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
          Length = 202

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 23/198 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S + HD+ +P+  +   L +LDE       ++ +          L F R   G   S   
Sbjct: 3   SGVSHDLRTPLTRMKLELAMLDEEDAAPM-LRDVDEMQALLDAFLDFSR---GAAVSEPE 58

Query: 80  LIGLGDIEQ-VIEDFIAVDKRVQVS---WTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            +   ++ + +I D+   + +V +      GE +   +   + + NL      ++  G +
Sbjct: 59  PVDPHELVRIIIADWQRQENQVSLGEMSGAGEVMLRRQPVRRAVENLI---SNAVRYGTR 115

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---------FYYV 186
             +SV  ++      ++ +G     PE+    +     + +D    Q            V
Sbjct: 116 ARVSVALTERSLRIRVEDDGPGI-PPEQRGDAI--RPFTRLDPARNQNRGSGVGLGLAIV 172

Query: 187 ILLAHENKIRLLPEIIDD 204
              A  +   L      D
Sbjct: 173 ADTARAHGGTLRLGESPD 190


>gi|332160503|ref|YP_004297080.1| sensory histidine kinase CreC [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664733|gb|ADZ41377.1| sensory histidine kinase CreC [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 475

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLK--------FMRLAFGYT 74
           H++ SP+ AI  + ELL E        + LI         R++          RL     
Sbjct: 265 HELKSPLAAITGAAELLRESPPPATAQRFLIN--IEQQSARIQQLVDKMLIQARL----E 318

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124
             VD  +   +I  +I+  +   +   VS       +  + A          + L NL  
Sbjct: 319 SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTNLID 378

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            A    P GG+VT+S     +E + +++  G+  
Sbjct: 379 NALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGI 412


>gi|229101139|ref|ZP_04231905.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28]
 gi|228682267|gb|EEL36378.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28]
          Length = 672

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 14/171 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLK 65
           LS++DL+  + + I H+I +P+  +   L+LL E    +   +   L+      A   + 
Sbjct: 452 LSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDRANSIIT 511

Query: 66  FMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVD-----KRVQVS-WTGEKIDLSRERAK- 117
              L+ G T   D  ++ L  I   I   I +D     K +QV      ++ L+R   + 
Sbjct: 512 EF-LSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNRNEIRQ 570

Query: 118 ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167
           +L+NL+     ++  G  +TIS  ++ +N  + +++  G   R PE   ++
Sbjct: 571 LLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDQGKGIR-PEVLEKL 620


>gi|198245723|ref|YP_002218089.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205357423|ref|ZP_02347567.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|197940239|gb|ACH77572.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205321829|gb|EDZ09668.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 465

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +++  ++S  + +     +      P++   I      +  
Sbjct: 361 QVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQLEAIFTPYFTTKA 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 421 DGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|88797216|ref|ZP_01112806.1| sensor histidine kinase [Reinekea sp. MED297]
 gi|88780085|gb|EAR11270.1| sensor histidine kinase [Reinekea sp. MED297]
          Length = 507

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 16/146 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRLKFMRLAFGYTGSVD 78
           + HD+ +P+  +  SLELLD          +   I          L F +L  G   +  
Sbjct: 301 VSHDLKTPLARLRFSLELLDLPDDNPYRQNMNRDIEQLVQLTEELLLFHQL--GSPEATP 358

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRG 133
           + + L  +    E  ++ D + +++    K  L      R   +++ NL      ++  G
Sbjct: 359 APMDLTAL--TTERLVSFDSQGEITSELPKAPLSATIQPRHWTRLIDNLL---SNAVQYG 413

Query: 134 -GKVTISVQDSKNENIFSLKINGNLA 158
            G+V + +  S+N    S++ NG   
Sbjct: 414 RGRVHLRLATSENGVRLSVEDNGPGM 439


>gi|196228677|ref|ZP_03127543.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226958|gb|EDY21462.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 547

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 74/218 (33%), Gaps = 28/218 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----------SSMSAIIRLK-FMRLA 70
           +CHD  + + AI    ELL +     +  +L+R            +   + RL+ F R  
Sbjct: 187 VCHDFNNALMAIIGYTELLLQNAELIDDRELLREYLKTMNIAGRDASHVVSRLRDFYRPR 246

Query: 71  FGYTGSVDSLIGLGD-IEQVI--------EDFIAVDKRVQVSWTG---EKIDLSRERAK- 117
                 V + + + D IE+++           +   + ++V         +  +    + 
Sbjct: 247 --EENDVFTAVDVNDLIEEIVPLTKPKWHGQALESGRTIRVDLELQKLPPVLGNSSELRE 304

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-TI 176
            L+NL   A  ++P+GG +T+     ++     +   G      E   + ++    +   
Sbjct: 305 TLMNLVFNAVDAMPKGGTITLRTVPLEDAIRIEVADTGTGM-TEEVRQRCLEPFFSTKGD 363

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +       +   ++  +  E +          L 
Sbjct: 364 DGTGLGLAMSFGIVRRHEGTMDIETVLGEGTTFVITLP 401


>gi|167629027|ref|YP_001679526.1| sensor histidine kinase domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167591767|gb|ABZ83515.1| sensor histidine kinase domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 659

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 19/173 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL- 64
           L  ++LVA + + I H+I +P+  +   L++L   DE+    E   L+      A   + 
Sbjct: 425 LDRLNLVAQMAAGIGHEIRNPMTTVRGFLQILRAKDELANHWEHFDLMIEELDRANAIIS 484

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKIDLSRE 114
           +F+ LA          + L ++  +I                  R+++    E     +E
Sbjct: 485 EFLSLA----KHKVDDLRLQNLNAIIRALYPLLEADASLGKKAIRLELGPIPETYLGEKE 540

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +++LNL      ++  GG++ I      +  + ++   G+    P+   Q+
Sbjct: 541 IRQLVLNLVRNGLEAMGEGGELIIRSYREGDAVVLAVCDQGSGIS-PDALAQL 592


>gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199]
 gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199]
          Length = 414

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 28/207 (13%)

Query: 24  HDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSA----IIRLKFMRLAF 71
           H++ +P+ AI    EL+              +     I  S +         L F R+  
Sbjct: 193 HELRTPLNAIIGMSELIRSELWGAVGHPKYAEYATD-INDSGLHLLDLINDILDFSRVEM 251

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAV--DKR-----VQVSWTGEKIDLSRERAKILLNLFM 124
           G     D  I + D+ +     IA   ++R     V+VS +       R   ++LLNL  
Sbjct: 252 GKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTCVVRVSGSPILTADRRAMRQMLLNLLS 311

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--ESTID----- 177
            A    P GG+VTI+  D   +   ++ +       P +  + +      +  I      
Sbjct: 312 NAVKHTPPGGRVTIT-SDVDGQGGLAIVVEDTGRGIPAERLEWITEPFNVDEEISVTRQG 370

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDD 204
              +       L   +  ++  +  + 
Sbjct: 371 GAGLGLAITKRLVERHGGQISIDSSEG 397


>gi|149923317|ref|ZP_01911725.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149815797|gb|EDM75319.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 639

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 17  LLCSRICHDIISPIGAI--HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMR--LAF 71
           LL   + HD  + + AI  H  +  L+  G+  E ++ +      A  R +   R  L F
Sbjct: 272 LLAGGLAHDFNNLLVAIMGHTGMLRLEAEGLSREALEDL-DGLDEAAARARELTRQLLTF 330

Query: 72  GYTGSVD-SLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123
           G   +++ S + LG   +    ++   +    R  +    E + L  +RA++   ++NL 
Sbjct: 331 GRAQAMELSEVELGAALRQSWRLLGRLLPSSIRKLLVIEDEALRLVVDRAQLEQVVMNLC 390

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           + A  ++P GG++ + ++  +             A  P +F QI   +    I   
Sbjct: 391 INARDAMPEGGELEVRLR--RVALSAEALGAEREAVEPGEFAQISVRDTGEGIAPA 444


>gi|94310593|ref|YP_583803.1| sensory histidine kinase CreC [Cupriavidus metallidurans CH34]
 gi|93354445|gb|ABF08534.1| sensory histidine kinase in two-component regulatory system with
           CreB or PhoB, regulator of the CreBC regulon
           [Cupriavidus metallidurans CH34]
          Length = 481

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 24  HDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           H++ SP+ AI  + ELL E          +  IR  +    + ++ + LA          
Sbjct: 265 HEMKSPLAAIGGAAELLQEDMPTADRQRFLGNIRSQAQRLDLLIRKL-LAL-AEVEQRQR 322

Query: 81  IGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDLSRERA-------KILLNLFM 124
           +   +  ++ ++           A  + V + W       S + +       + ++NL  
Sbjct: 323 LEKREPVRLAQEIEHILASLEPRARQRGVSLHWQPPAQGQSFDVSGDVFLLRQAIVNLIE 382

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            A    P G  V + ++   +++  +L+I       PE
Sbjct: 383 NALDFAPSGTDVDVVLEPGPHQDQITLRIEDRGPGIPE 420


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAF 71
           S + H+  +P+  +   LE +L    + +   + + +   +A   L+       F RL  
Sbjct: 336 SNVSHEFRTPLTLMLGPLEDVLASGTLPEAAARELDVVHRNATRLLRLVNTLLDFSRLEA 395

Query: 72  GYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLF 123
           G   +    + L      +   F +V +R  ++ T +   L            KI+LNL 
Sbjct: 396 GRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCPPLPAPFYVDREMWEKIVLNLL 455

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDS 178
             A       G +T+ ++    +    +   G        P  F +     G    T + 
Sbjct: 456 SNAFK-FTFQGTITVRLRARTGQAWLEILDTGTGIPPEDLPHLFERFYRVKGAQGRTHEG 514

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I    V  LA      +  E ++      + +L +
Sbjct: 515 TGIGLALVQDLARLQGGEVRVESVEGQGSCFTVVLPE 551


>gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 1051

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 71/216 (32%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAF 71
           S I H++ +P+  I   L ELLD+  +  +   ++R +  +A          L F  +  
Sbjct: 324 SNISHELRTPLALILGPLQELLDDPSLGSDQHTVLRTARRNAMRLLTLVNDVLDFTSVDS 383

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVSWTGEKIDLSRER-------AKILLNLF 123
           G T +      L      +        + V ++   E   L            +I+ NL 
Sbjct: 384 GRTRARYQPTDLTAQTAELAGVFRSSMESVGLTLRVEGEPLPEPVHLDRHMWERIVFNLL 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI--VDGNVESTIDS 178
             A      GG VT+ V+  +   + ++   G        P  F +   V G+   + + 
Sbjct: 444 SNALKHTFAGG-VTVGVRPGEGHAVVTVSDTGVGIPGHEIPNLFERFHRVSGSPSRSHEG 502

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I       L   +  R+  +         +  L 
Sbjct: 503 TGIGLALARELIALHGGRIEADSRLGEGTTFTITLP 538


>gi|209963475|ref|YP_002296390.1| Nitrogen regulation protein NtrB [Rhodospirillum centenum SW]
 gi|209956941|gb|ACI97577.1| Nitrogen regulation protein NtrB [Rhodospirillum centenum SW]
          Length = 375

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 86/211 (40%), Gaps = 21/211 (9%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAF 71
           + A+L     H++ +P+  I  + +LL+E  +E++ +  +LI   +   +  +   R+  
Sbjct: 145 MAAMLA----HEVKNPLSGIRGAAQLLEESVVEEDRLLTRLICDETDRIVALVD--RMEV 198

Query: 72  GYTGSVDSLIG------LGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRER-AKILLNL 122
                            L  + ++ ++  A   R   +   +   +  +R++  ++LLNL
Sbjct: 199 FADRRPVQKAAINIHSVLEHVRRIAQNGFARHIRFVERYDPSLPPVLGNRDQLIQVLLNL 258

Query: 123 FMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHD 180
              A  + P +GG++ +S          ++  + +    P   +   +G+ +   I ++ 
Sbjct: 259 VKNAAEACPEQGGEIVLSTAYQHG-VRLAVAGSDSRVHLPLLVSVQDNGDGIPEDIQANL 317

Query: 181 IQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
              +    L      + L+ +I+ DH  V+ 
Sbjct: 318 FDPFVTTKLNGTGLGLALVAKIVGDHGGVIE 348


>gi|322434336|ref|YP_004216548.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321162063|gb|ADW67768.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 526

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 13/168 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQL----IR 54
           ++ +      + +   L + I H+I +P+ AI N L L+ +  +  +    + L    + 
Sbjct: 279 SEEVLRRTEKLAVAGRLAASIAHEINNPLEAITNCLYLVGKTELPPDARTYLALAQDELD 338

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDL 111
             +   +  L+F R +     +  +L  L +    +       +R+ +         I  
Sbjct: 339 RVAQITVQTLRFYRRSTHAADT--NLHDLIETVAALLGSRMNRQRITLVRKFGEIPPIFA 396

Query: 112 SRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                + +L NL   A  +LP GG +T+    S++       I  ++A
Sbjct: 397 HDGEIRQVLANLVGNAIDALPNGGVITLRTGLSRDWKTGRTGIRISVA 444


>gi|162456212|ref|YP_001618579.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161166794|emb|CAN98099.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 558

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 2/124 (1%)

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
           D   V  RV+V   G ++ L   + +  LLNL   A  ++P+GG++ +SV  S      +
Sbjct: 421 DRAGVAVRVEVEEAGPELLLDESQIRQALLNLLRNAREAMPKGGEIVVSVSFSSGAATIA 480

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G      E    I D    +      +       +   +   +  E  +       
Sbjct: 481 VDDTGPGV-PEELRASIFDPFFTTKQRGTGLGLAVTRDIIEAHGGTISCEPREAGGTRFR 539

Query: 211 ALLE 214
             L 
Sbjct: 540 IALP 543


>gi|316931525|ref|YP_004106507.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315599239|gb|ADU41774.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1071

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 66/178 (37%), Gaps = 14/178 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80
           I HD  + +  I  +++++ +   +   +  I      A  R  +  RL   +       
Sbjct: 683 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGSELTRLLLAFARKQPLR 742

Query: 81  IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLS--RERAKI---LLNLFMVAHASL 130
               D+  ++          + + ++V             +R ++   L+NL + A  ++
Sbjct: 743 PDETDVNALLAGLQSLLRPTLGEPIEVETMLAPDTWPIYVDRGQLESALVNLAVNARDAM 802

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV--DGNVESTIDSHDIQFYYV 186
           P+GGK+TI   +   ++    ++ G+LA        I      +  +I S     ++ 
Sbjct: 803 PKGGKLTIESCNVVVDSDLGKRL-GDLAPDDYVMIAIADTGSGIPESIRSKVFDPFFT 859


>gi|322418457|ref|YP_004197680.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320124844|gb|ADW12404.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 369

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 14/218 (6%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIR 63
           +  L AL  L + + H+I +P+ +I  + E+L E G            L++ S     + 
Sbjct: 149 AERLSALGELSAILAHEIRNPLASIRGTAEILMEEGTPAPRRGEFLEILVKESDRLNRVV 208

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------K 117
             F+R+A              ++  ++    A  +   V        L R  A      +
Sbjct: 209 EDFLRMARPEPADKRECDINEELGNMVTLLSAQARGSNVRLELSCGALPRLVADPEKLRQ 268

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTI 176
             +N+ + A  + P GG+V ++           ++          +    I +    +  
Sbjct: 269 AFMNIMLNAIQASPEGGRVLVATSCDPKAGSVEIRFCDEGVGIAADAIAHIFEPFFTTKG 328

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   L  E           +L 
Sbjct: 329 SGTGLGLPITRKIIEGHGGTLEVESGPGRGATFKVILP 366


>gi|255038918|ref|YP_003089539.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254951674|gb|ACT96374.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 291

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 23/169 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLA------ 70
           HD+   +G I ++ +LL   G   +   LI++   +           L + RL       
Sbjct: 75  HDLRGQVGVIASATQLLGMAGNATDSNVLIQMIQRNIGQMTHLMSNLLDYARLESGQEAI 134

Query: 71  ----FGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
               F     +  LI   +        ++  +    +    + + + R    ++LN    
Sbjct: 135 HVSRFNVAELLQELIDGTEAFASERQLWLRSNGPDALEIDSDPVQIRRIAQNLVLNALKY 194

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
                   G VT+S Q  ++ N + L ++        +    + G    
Sbjct: 195 TTT-----GGVTVSWQSLEDANGWQLTVSDTGPGLSAQQISRLTGQTSE 238


>gi|153003492|ref|YP_001377817.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027065|gb|ABS24833.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 518

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 80/226 (35%), Gaps = 27/226 (11%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMS---- 59
           +  L A+  + ++I H+I +P+ AI  + ELL E          E +QL+   S      
Sbjct: 281 AERLAAVGRISAQITHEIRNPLNAIGLNAELLAEELAELDVPPREALQLVSAISREVDRL 340

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEK--IDL 111
              A   L+F RL         +   L +I   + DF+  +    R+++          +
Sbjct: 341 NGVAEEYLRFARL----PKPALARQDLNEILSGLLDFLGPELAAARIELERALAAGLPAV 396

Query: 112 SRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +  ++    LNL   +  ++P GG VT+  +   +     +   G     P   T+I 
Sbjct: 397 QADEGQLRAVFLNLLRNSREAMPSGGTVTVRTRRVGDAIEAEVSDTGGGI-PPGDLTRIF 455

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +   +   +  E+   +  +            L 
Sbjct: 456 EAFYSTKERGTGLGLAFTRQVVVEHGGSIRCDSTVGQGTTFVVRLP 501


>gi|94271292|ref|ZP_01291927.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93450492|gb|EAT01658.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 461

 Score = 37.6 bits (86), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           + LLNL M A  ++P GG++T+S +  +++    ++  G     PE  
Sbjct: 363 QALLNLVMNAIEAMPAGGQLTLSSRRLEDQVEIGVRDTGGG--IPEAI 408


>gi|320352828|ref|YP_004194167.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320121330|gb|ADW16876.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 525

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 70/177 (39%), Gaps = 33/177 (18%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM-SA 60
            +  L +L  + + + H+I +P+G + ++ E+L         G E     ++  +S   A
Sbjct: 302 EAQRLASLGKMVAAVSHEIKNPLGIVRSTAEILGNRISKVAPGNERLANIIVEETSRLDA 361

Query: 61  IIR--LKFMRLAFGYTGSVDSLIG--LGDIEQVIEDFIAVDK--------RVQVSWTGEK 108
           I+R  L F R            +    G +  V+E  +   +        R++V      
Sbjct: 362 IVREFLDFAR---------PREVDKVPGSLNGVVERLLRFMEPEFQQKAVRLEVRLDPNL 412

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            ++  +     ++LLN+   A  ++P+GG + ++          ++++  +    P 
Sbjct: 413 PEIPFDSEQIYQVLLNIVFNAIQAMPQGGDLLLNTMLEPGGGAVAVEVADSGIGIPP 469


>gi|309779207|ref|ZP_07673970.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308922011|gb|EFP67645.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 373

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 25/214 (11%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIED---EVMQLIRLSSMSAI----IRLKFMRLAFG- 72
           + HD+ SP+GAI  S E LL + G+       +  I+  +M         L F R   G 
Sbjct: 159 LAHDLRSPLGAILASTETLLHDDGLSSRSVRAVAFIQRGAMRVQQMIDDLLVFTRTRLGD 218

Query: 73  -YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVAH 127
               S  +          I++  A      +          +       ++L+NL     
Sbjct: 219 FLPTSFSTQDMGRLCTDAIDEVCASYPDATIDLRLTGELRGKWDGSQIGQLLVNLL---A 275

Query: 128 ASLPRG-GKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHD--- 180
            ++  G G+V I       +   ++   G     + FP  F  +          S     
Sbjct: 276 NAVRYGSGRVAIEAAGRDGQMTIAVSNEGNPIPPSAFPTLFDPLTRATRPDQSGSAAGIG 335

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  Y    +   ++  +  +   +H    +  + 
Sbjct: 336 LGLYICRCIVEAHRGTIDVQ-SSEHGTTFTVRIP 368


>gi|168702420|ref|ZP_02734697.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1013

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 23/174 (13%)

Query: 39  LLDEVGIEDEVMQLIRL-------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----E 87
           LL+EVG +  + + I         S+      L F R           ++ L  +    E
Sbjct: 661 LLNEVGPKSPLREHIEEIRHAGKRSADLTRQLLAFSR----QQVLAPQVLDLSTVTRGTE 716

Query: 88  QVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
           +++   +  D R++VS     W         +  ++L+NL + A  ++P GG +T+ + +
Sbjct: 717 KLLRQLLGADIRLRVSAGARVWPVRAD--PGQIEQVLMNLAVNARDAMPTGGALTVEIGN 774

Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYVILLAHENKI 195
           ++ +  ++ +  G       + +    G  +   + S   + ++    A     
Sbjct: 775 AELDEGYAREHRGARPGPHVRLSVSDTGTGMSQDVLSRIFEPFFTTKAAGHGTG 828


>gi|167566329|ref|ZP_02359245.1| sensor histidine kinase [Burkholderia oklahomensis EO147]
 gi|167573431|ref|ZP_02366305.1| sensor histidine kinase [Burkholderia oklahomensis C6786]
          Length = 389

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIE 91
           E  D   +  ++  LI  S   A  R++  R+      F   GS + S   +    +   
Sbjct: 190 EAADLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWSFADIHKGLEATL 246

Query: 92  DFIAVDKRVQVSWT------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           +    + + +               +  +  ++++NL M A  ++P  G +TI  +   +
Sbjct: 247 NVARNELKYKADVVKDYGELPPVECMPSQLNQVVMNLLMNAVQAIPERGTITIRTRREGD 306

Query: 146 ENIFSLKING 155
               +++  G
Sbjct: 307 GVTIAVEDTG 316


>gi|94967781|ref|YP_589829.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549831|gb|ABF39755.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 390

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLN+ + A  ++ R G + +S+++  +    S+  NG     P+    I      +  
Sbjct: 283 QVLLNMLLNAIQAVAREGHIVVSLENRGDYAAISITDNGPGI-PPDTLKNIFRPFFTTKG 341

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +  ++  R+              LL 
Sbjct: 342 HGTGLGLSLARRMVEDHAGRIEVTSKVGEGTTFVVLLP 379


>gi|15596440|ref|NP_249934.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9947173|gb|AAG04632.1|AE004553_9 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 858

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIR----LKFMRLAFGYT 74
           I HD  + +  I  SLEL+     +     LI     S+  A       L F R      
Sbjct: 504 IAHDFNNLLTPIMASLELIRRRLDDARSTDLIDGALQSAERARNLVGRLLTFAR----RQ 559

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFMVAH 127
                 + L ++ + + D I       +    E  +          +    +LNL + A 
Sbjct: 560 TLKPQAVALRELVEGMHDLIERSLDPTIEVRIEIPERLPAVVVDPHQFELAILNLAVNAR 619

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFYY 185
            ++  GG++ I    ++ + +    ++G  A R+         G + + + +  ++ ++
Sbjct: 620 DAMGEGGRLEI---GARTDLVIDGAVDGLGAGRYVCLEVADNGGGMPAEVLARCMEPFF 675


>gi|328952067|ref|YP_004369401.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452391|gb|AEB08220.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 486

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 68/167 (40%), Gaps = 32/167 (19%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS----MSA 60
           +  L AL  + + + H+I +P+G I ++ ELL    +    +  + Q+I         + 
Sbjct: 264 AERLAALGEMVAGVAHEIRNPLGIISSTAELLRKRLEANPSDGRLAQIIEEEVNRLNQTV 323

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERA 116
              L F R         +  +   DIE+++E  +   +    R Q+  + E+      + 
Sbjct: 324 TEFLDFAR-------PREPNLQPTDIERILERGLEFLQPEIDRSQI--SLERHYQLNGQV 374

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
                    +  LN+F+ A  ++P+GG++ ++ +         + I 
Sbjct: 375 LKADSELLYRAFLNIFINAIQAMPQGGRLIVATEPGPQNKGARIIIQ 421


>gi|239908643|ref|YP_002955385.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798510|dbj|BAH77499.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 570

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 20/157 (12%)

Query: 18  LCSRICHDIISPIGAIH--NSL--ELL---DEVGIEDEVMQLIRLSSMSAIIRLK-FMRL 69
           L + + H+I +P+  I+    L  +L+   D+   ++  + LI  S +  ++R +   R 
Sbjct: 349 LAAGVAHEINNPLAVINEKTGLMRDLIGLRDDFPDKERYLLLI-DSVLKTVMRCRDITRR 407

Query: 70  AFGYTGSVD---SLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLS-----RERAKI 118
             G+   +D     I + D+      F+   A+ +++ +    +           +  ++
Sbjct: 408 MLGFARRLDVTLEEININDVITETSGFLNQEALHRKIDLHLDLDPEVTGIVSDRGQLQQV 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            LN+   A A++P GG + I  +         ++ NG
Sbjct: 468 FLNILNNALAAVPDGGHIEIHTRGDAEGVSVIVRDNG 504


>gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
 gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
          Length = 389

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 38/237 (16%)

Query: 13  DLVALLCSR------ICHDIISPIGAI----HNSLELLDEVGIEDEVMQLIRLSSMSAI- 61
           +L   L SR      I HD+ SPIG++    +  L+ LD   +    + ++R+ +  A  
Sbjct: 143 ELQETLASRDKMYSVIAHDLRSPIGSLKMLFNTLLDSLDAERVGAGNLDMLRMGNDIAED 202

Query: 62  ------IRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   LK+ +   G   +V   + L ++      I + +A  K + V +        
Sbjct: 203 TFSLLDNLLKWTKCQTGRMHTVYQDVDLAEVVLFSSKISESVARTKGIVVEYDIPAPIHV 262

Query: 113 R---ERAKILL-NLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           R   +  K ++ NL      ++      GGK+ +S  ++    +  ++  G   + PE  
Sbjct: 263 RCDVDMVKTIVRNLL---SNAIKYSPEGGGKIIVSTAETPTHAVVRVRDFGVGIK-PEDL 318

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +++D  +          +   +     + L H N   +  E +       S  + K
Sbjct: 319 NKVLDPAMYFTTYGTGKEEGSGLGLQLCLDLVHRNGGEMTVESVYGEGATFSFTIAK 375


>gi|254523568|ref|ZP_05135623.1| two-component system sensor protein [Stenotrophomonas sp. SKA14]
 gi|219721159|gb|EED39684.1| two-component system sensor protein [Stenotrophomonas sp. SKA14]
          Length = 380

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYT-GSVD 78
           + HD  + +  + N L+L+        V +LI  +  +A       R  L FG     V 
Sbjct: 161 LAHDFNNLLTIVANCLDLISLRVKNGGVAKLIDTAQRAAERGALLTRQLLTFGKGQTLVP 220

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKI---LLNLFMVAHASLP 131
             + L  +    E  +       ++ T E       LS ++A++   +LNL   +  ++P
Sbjct: 221 EAVDLAALMAECEAMLRRSAGDAIALTVEVSRGLPTLSLDKAQLEAAILNLVCNSRDAMP 280

Query: 132 RGGKVTISVQDSKNEN 147
           +GG + I+    +  +
Sbjct: 281 KGGTILITASARQTRD 296


>gi|156743072|ref|YP_001433201.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
 gi|156234400|gb|ABU59183.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
          Length = 397

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 62/168 (36%), Gaps = 15/168 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNS-LELLDEVGIE--DEVMQLIRLSSMSAIIRLK 65
           L  M L A L +   HD I  + A      +LL +       + ++ I  ++      L+
Sbjct: 161 LEEMRLRATLAAGAAHD-IGNLFASVLGHAQLLQQAAPSHLQDDLKTIEQAARDGHYLLR 219

Query: 66  FMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRE 114
            +      T SV++          + D  Q+   F    + V+V+     +        +
Sbjct: 220 RLLTIRSATHSVEATTSPVLLPTLVHDALQLTRPFWGTRRSVKVNMALAPVPPVRGHPAD 279

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             ++L+NL +   +++P GG +T+    +    +  +   G      +
Sbjct: 280 LREVLINLILNGVSAMPEGGTLTVRTYSTGERAVVEISDTGAGIAPAQ 327


>gi|256828818|ref|YP_003157546.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577994|gb|ACU89130.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 450

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   +ILLNLF+ A  ++P+GG +T+S Q  K+     +   G+     + 
Sbjct: 340 PLDPDRMLQILLNLFLNAIQAMPQGGTLTVSAQRVKDRLELRVADTGHGIPAQDL 394


>gi|239918316|ref|YP_002957874.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665]
 gi|281415487|ref|ZP_06247229.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665]
 gi|239839523|gb|ACS31320.1| signal transduction histidine kinase [Micrococcus luteus NCTC 2665]
          Length = 389

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 28/206 (13%)

Query: 20  SRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIR 63
           S + H++ +P+        A+ + +   DE   E    QL         I   S     R
Sbjct: 152 SDLAHELRTPVSVLTVYHEALQDGVSHWDEPTGELMGEQLARLTRLVEDINDVSRVEEGR 211

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERA-KILLN 121
           ++  R   G +G + +           E +      + +       +D+ R+R  ++L N
Sbjct: 212 IELDRSPQGVSGLLHAATEAHK-----EAYATKGVALTMDADPGLAVDVDRQRMGQVLGN 266

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID- 177
           L   A    P GG+VT+  + S +    S+   G        P  F +   G+     D 
Sbjct: 267 LLTNALRHTPAGGRVTLEARQSPSGVTLSVTDTGEGISPEHLPHVFERFYRGDTARDRDH 326

Query: 178 -SHDIQFYYVILLAHENKIRLLPEII 202
               +       L   +   L     
Sbjct: 327 GGSGVGLAISRALIQTHGGTLSATST 352


>gi|15890211|ref|NP_355883.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15158395|gb|AAK88668.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 710

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 15/150 (10%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  +   + I      A  R + +  +    GS   +
Sbjct: 493 LSHEVGNMIGIITGSLGLLERETGFSERQQRNINR-IRKAADRGRQLASSMLSIGSQQPI 551

Query: 81  IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHA 128
                D+  +++       IAV  R Q++   +  DL R         + +LNL + + A
Sbjct: 552 HPAYVDVAALLKGMVDVLEIAVGTRNQINLRLQ-DDLPRLALDAALFEQSILNLCLNSAA 610

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           ++P GG + I+ + S N    S++ NG+  
Sbjct: 611 AMPTGGVIIIAAEKSDNVVEISVEDNGHGM 640


>gi|307545686|ref|YP_003898165.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
 gi|307217710|emb|CBV42980.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
          Length = 496

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 77/220 (35%), Gaps = 42/220 (19%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L S I HD+ +PI  +    E+LD+  + +     +  +      A+  +K +       
Sbjct: 289 LFSAISHDLKTPITRLRLRAEMLDDPMLRERFCASLDELDQLVRGALDSVKGL------- 341

Query: 75  GSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDL-SRERAKILLNLFMVAHAS 129
             +   + + +   + ++           V+V      + +      + L NL      +
Sbjct: 342 -DMHEEVEIIEPRALCDELAGEMALQGGEVRVMGEAAPVAVKPLAFKRCLTNLL---ENA 397

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNL-------------ARFPEKFTQIVDGN-VEST 175
           +  G +  + ++D+ +    +++ +G                R     ++   G+ +   
Sbjct: 398 VFYGRRAEVRLEDTPDSLQMAIRDHGPGIEPAQRERVFSPFVRLEPSRSRHTGGSGLGLG 457

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I  H IQ +           RL  +   +  +V+S +L +
Sbjct: 458 IARHIIQAH---------GGRLALDNHPEGGLVVSLMLPR 488


>gi|148550730|ref|YP_001260169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148503149|gb|ABQ71402.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 500

 Score = 37.6 bits (86), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 30/229 (13%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSA----- 60
            L AL  + S + H++  P+ AI N L+     L  E    D V+  +  ++  A     
Sbjct: 266 RLTALGEMASALAHELNQPLSAIANYLKGSKMLLEREEDRNDRVIDAVGRAAAEALRAGK 325

Query: 61  -IIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            I RL+   +A G       S+  L+       ++        RVQ  ++ E   +  ++
Sbjct: 326 IIRRLRDF-VARGETERAVESLPKLVEEASALALV-GAKEHGIRVQHDFSPEIDLVLADK 383

Query: 116 AKI---LLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +I   +LNL   A  ++      PR   + I+  D+ +    ++   G      +   +
Sbjct: 384 VQIQQVVLNLVRNAIDAMAGNGSGPRALTIAIAPADT-DMARVTVADTGPGI-AADVADR 441

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      +       +   +  R+  E  +    V    L K
Sbjct: 442 LFQPFITTKRTGMGVGLSISRTIVEAHGGRIWAESHEGGGAVFGFTLPK 490


>gi|257457920|ref|ZP_05623079.1| sensory box histidine kinase [Treponema vincentii ATCC 35580]
 gi|257444633|gb|EEV19717.1| sensory box histidine kinase [Treponema vincentii ATCC 35580]
          Length = 404

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSMSAI 61
           +L +L  L + + H+I +P+ AI   ++LL         +      + + ++        
Sbjct: 150 NLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACNLEINAKAQKHLDVVEEEIERLN 209

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGEKIDLSRE 114
             +     A        + + + ++ + +      +          Q+      I     
Sbjct: 210 KIVVDFLFAVRPLQCEFAPVDVNELIKNLFATFQEEFSAAGITFVSQLDSELPVIQADER 269

Query: 115 RAK-ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             +  L+N+   A A++ P GG++ ++ +  + +   ++   G     P+   +I +   
Sbjct: 270 FLRQALINILTNAKAAMMPAGGELGVTTRFDEEKVYITVTDTGKGI-PPDILHKIFEPYF 328

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  D   +       +  E+   +            + +L 
Sbjct: 329 TTKPDGSGLGLTMTYKVIKEHGGDIQVHSEVGSGTRFTLMLP 370


>gi|197120792|ref|YP_002132743.1| signal transduction histidine kinase with CheB and CheR activity
            [Anaeromyxobacter sp. K]
 gi|196170641|gb|ACG71614.1| signal transduction histidine kinase with CheB and CheR activity
            [Anaeromyxobacter sp. K]
          Length = 1233

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 19/174 (10%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR----LSSMSAIIRLKFMRLAFGY 73
            + H++ +P+  I NSL LL+      E      ++I       +      L   R+A G 
Sbjct: 882  LSHELRNPLAPIRNSLHLLERSPPGSEGARRAQKVIARQVGHLARLVDDLLDATRVAHGK 941

Query: 74   TGSVDSLIGLGD-IEQVIED----FIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125
                   + L +  ++  ED    F +   R  +        +  +R ++   + NL + 
Sbjct: 942  LQLQRERLDLAEVAQRAAEDHRELFASRGVRFDLELPDRPAWVDGDRIRLSQAIGNLLLN 1001

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTID 177
            A    PR G V ++V  ++      +K  G     P    ++       + T+D
Sbjct: 1002 AAKFTPRDGAVRLAVTVAEPRAEVRVKDTGVGI-EPAMLPRLFQPFSQADETLD 1054


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + HD+ SP+ AI   +EL++ VG    ++ + ++ I++S  +        L   R+  G+
Sbjct: 426 VSHDLRSPLTAILGYVELIERVGTVNDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAGF 485

Query: 74  TGSVDS----LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126
               +      I    +E   +        +Q+    +   L     ++   + NL   A
Sbjct: 486 DTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNA 545

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV-DGNVESTIDSHDIQ 182
               P+GGK+ +S++   N+ +F +  NG        P  F +     N    +    + 
Sbjct: 546 IKYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNAAPDVSGTGLG 605

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +   ++ R+  +         + +L 
Sbjct: 606 LAIVKSIVEAHEGRIWVDSAVGTGSTFTVVLP 637


>gi|268316749|ref|YP_003290468.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334283|gb|ACY48080.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 646

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 48/226 (21%)

Query: 24  HDIISPIGAIHNSL---------------ELLDEVGIEDEVM-----QLIRLSSMSAIIR 63
           HD+ +P+ ++   L               ELL       + M     QLI  S++    R
Sbjct: 428 HDLRNPLSSVQ-GLIQTVREELPPDSPHRELLKLAEAASQRMLGTIEQLITASALE-SGR 485

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKI------DLSRE 114
           + F R+           + L ++      F    A  K+ Q+ + G             +
Sbjct: 486 VTFRRM----------RVDLVELVAETVHFHQDRATRKQQQLVFLGPSTGSCVVETDPEQ 535

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIV 168
             + L NL   A    P G ++T+ +    +    S++  G      + AR    F ++ 
Sbjct: 536 LRRALTNLLTNALKFTPSGKRITVQLARHTDTVRLSVRDEGPGLTEADRARLFGYFQRLS 595

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    S  +       +      R+  +         + +L 
Sbjct: 596 A-QPTGDEPSSGLGLAITKQIVERLGGRIEVDSTPGQGSTFTIVLP 640


>gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 1427

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 75/218 (34%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAF 71
           S + H+  +P+  + + LE ++ +  + D+   L+ ++  + +  LK       F R+  
Sbjct: 365 SNVSHEFRTPLTLMLSPLEEVMTQAALPDDQQALLGIAHRNGLRLLKLVNTLLDFARIEA 424

Query: 72  GYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLF 123
           G   +  + + L     ++  +F +   +  +    +   L +          KI+LNL 
Sbjct: 425 GRVTAQFTPVDLPSFTAELASNFRSAIDKAGLRLIIDAPPLPQPVYVDREMWEKIVLNLL 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVESTI 176
             A       G++ ++V+   +     + ++      P      +       +G    +I
Sbjct: 485 SNAFK-FTFAGEIAVTVRAGPDGRSAEIVVSDTGTGIPPTEIPHLFERFRRVEGARGRSI 543

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I    V  L   +   L  E            L 
Sbjct: 544 EGSGIGLALVQELVKLHSGSLSVESELGRGSAFRVTLP 581


>gi|310828177|ref|YP_003960534.1| putative two-component sensor histidine kinase [Eubacterium limosum
           KIST612]
 gi|308739911|gb|ADO37571.1| putative two-component sensor histidine kinase [Eubacterium limosum
           KIST612]
          Length = 462

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 22/156 (14%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---- 75
           S + HDI +P+  I  + ELL E  +  E  + +R    +A +  ++ RL    +     
Sbjct: 243 SALAHDIKTPLTIIKGNSELLTEDNLNGEQAECVRYIHDNAEVIEEYTRLLMEVSQDRAA 302

Query: 76  ------SVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLN 121
                 ++ ++  +  I++  E + A          +R+  ++TG+   L+    + ++N
Sbjct: 303 WNLNPEAIPAMAFMEQIKKQAEGYTAGRQIRLCFDTERLPEAFTGDSGLLN----RAVMN 358

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +        P GG +++  + + +    ++   G  
Sbjct: 359 IIANGADYTPEGGTLSLKAEGNGSVISITITDGGPG 394


>gi|258513455|ref|YP_003189677.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777160|gb|ACV61054.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 686

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 29/171 (16%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRL-K 65
            S ++LVA L + I H+I +P+  +   L++L        +    L+      A   + +
Sbjct: 471 FSRLNLVAELAAGIGHEIRNPLTTVRGFLQMLRSKKNAQYMEYYDLMIEELDRANSIISE 530

Query: 66  FMRLAFGYTGSVDSLIGLG---------------DIEQVIEDFIAVDKRVQVSWTGEKID 110
           F+ LA       +  + L                  E +I D    + ++++     ++ 
Sbjct: 531 FLSLA------RNKPLDLHKQNLKQIIINISPLIQAEAIISD---KNIKLELE-DIPELL 580

Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           L ++   +++LNL + A  ++  GG +TI    + ++ + ++K  G   + 
Sbjct: 581 LDKKEIHQLILNLVLNAIEAMFPGGTITIKTYTANDKVVLAIKDEGQGIKP 631


>gi|253701112|ref|YP_003022301.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251775962|gb|ACT18543.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 423

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 96  VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + ++++W      L       +  ++L+NL   A  ++P+GG +TI+V        
Sbjct: 268 AGQGIELAWEPAPDTLPIMVDQAQMEQVLVNLTANARDAMPQGGTLTITVDAVDLAPH 325


>gi|152984057|ref|YP_001347318.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150959215|gb|ABR81240.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 482

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 81/214 (37%), Gaps = 34/214 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  +++      + ++L+      A+  +K      
Sbjct: 283 LFSAISHDLRTPITRLRLRVELLEDERLQEKFGRDLDELELL---VKGALQCVK------ 333

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
                +   +   D+  +++        D RV+V     +    +  A  + + NL    
Sbjct: 334 --DTDIHENVEPVDLNLLLQHIAEPYLADGRVEVVGRAAEPYPGKPLALKRCIGNLL--- 388

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             +L  G +  + ++D     +  +  +G     PE+  + +       +     Q Y +
Sbjct: 389 DNALKYGERARLCLEDGPEAVVLHVDDDGPG--VPEQRLEQIF-EPRFRLSPRG-QGYGL 444

Query: 187 IL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            L     +AH +   +  +   +  + +S  L +
Sbjct: 445 GLGIARNIAHTHGGEVSLQNRREGGLRVSLRLPR 478


>gi|329888262|ref|ZP_08266860.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328846818|gb|EGF96380.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 465

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 56/192 (29%), Gaps = 18/192 (9%)

Query: 24  HDIISPIGAIHNSLE----LLDEVGIED----EVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           H++ +P+  I N LE     LD+    +      ++     S      L   R+  G   
Sbjct: 255 HELRAPLNRIRNRLEDLAANLDDAQAREAAVERALEETDQVSALFEALLTLARIESGDAA 314

Query: 76  SVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
                + L  +   + D           R+ V+        +           ++ +A  
Sbjct: 315 LQTERLDLAALAATVADIYSPFVEEAGGRLTVALAPTGAVEADPALIQQALANLIENAVF 374

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYY 185
             GG++ +S    K   +  +  +G      E+   +     +            +    
Sbjct: 375 HGGGRIEVSTCSEKGRAVVRVADHGPGVPEAERDKILRRFYRLGQGGSGHTSGAGLGLAM 434

Query: 186 VILLAHENKIRL 197
           V  +A  +   L
Sbjct: 435 VAAVARAHGGEL 446


>gi|209549636|ref|YP_002281553.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535392|gb|ACI55327.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 691

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 21/190 (11%)

Query: 24  HDIISPIGAIHNSLELLDEV-GIEDEVMQLI-------RLSSMSAIIRLKFMRLAFGYTG 75
           HD  + +  +  +LELL +    + + M+L+       R  +      L F R       
Sbjct: 305 HDFNNLLMVVLGNLELLGKHFAGDGKAMRLVDGALQGARRGAALTQRLLAFAR----QQD 360

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------GEKIDLSRERAKI-LLNLFMVAHA 128
                + L D+   + D +       +S             +   + ++ LLNL + A  
Sbjct: 361 LQVKPVDLADLVSGMNDLLRRSVGSSISIETTLPAKLPPALVDANQLELALLNLAVNARD 420

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG ++IS+++ +          G              G    T+      F+    
Sbjct: 421 AMPDGGMLSISLREEQVVGNDGDLGEGAYLVL--AVADSGTGMDAETLKKAVDPFFSTKE 478

Query: 189 LAHENKIRLL 198
           L     + L 
Sbjct: 479 LGKGTGLGLS 488


>gi|119896749|ref|YP_931962.1| putative two component sensor kinase [Azoarcus sp. BH72]
 gi|119669162|emb|CAL93075.1| putative two component sensor kinase [Azoarcus sp. BH72]
          Length = 462

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 25/209 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL------------LDEVGIEDEVMQLIRLSSMS 59
           +D    + S I HD+  P+ A+ N+++                 G+ D+  +L+R    +
Sbjct: 235 VDAAKHVSSAIAHDMRRPLIALRNAIDEARRSPGADPALRTQLEGLRDQTEELLR----T 290

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERA 116
               L   R+  G  G +   + L +I +   D    +A  +   ++       +  +R 
Sbjct: 291 FSALLSLARIEAGALGPLLQAVNLTEIARDAIDLYEPLAASQGRALNPRLAPACVRGDRD 350

Query: 117 KILLNLFMVAHASLPRG-GKVTISVQD-SKNENIFSLKINGN---LARFPEKFTQIVDGN 171
            +   L  +   +L  G G + I +          +++ +G     A  P  F +    +
Sbjct: 351 LLFQVLQNLIENALKHGAGDIDIGIDTLPDGGARLTVRDHGEAVAAADLPHLFERFFRAD 410

Query: 172 VE-STIDSHDIQFYYVILLAHENKIRLLP 199
              S  +   I    V  +A  +   +  
Sbjct: 411 SSRSAAEGAGIGLALVRGIAEAHGGSIRA 439


>gi|226228598|ref|YP_002762704.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091789|dbj|BAH40234.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 689

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLKFMR-LAFGYTGSVD-SLIGLGDIEQVIEDFIAVD 97
           LD  G     +  IR S+  A   ++  R L++  T + +   + LG++    +  +   
Sbjct: 351 LDNNGEAAMYLDDIRRSAERARTLVR--RILSYSRTDNAEREPLDLGELLTETDRLLRAT 408

Query: 98  --KRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149
             + V +    E   + R  +    +ILLNL   A  ++P GG + IS   +  +++ + 
Sbjct: 409 LPQSVHLHCVSEPGVIVRAESGEIQQILLNLATNAAHAMPTGGTLRISATGAPVRDDAVL 468

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202
           +    G       +      G  + TI      F+    L     + L     
Sbjct: 469 TSTFRGQRFVACLQVQDTGIGMDDDTITRAFEPFFTTKSLGRGTGLGLAMVHT 521


>gi|197120985|ref|YP_002132936.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196170834|gb|ACG71807.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 237

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 10/208 (4%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEV--GIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72
           L  + + H++ +P+ A+   ++L L         E ++ +  +       L+ ++  A G
Sbjct: 26  LDGATLAHELKNPLTAVKALVQLGLANPREAASHERLEQVARAVERMERILRDYLASARG 85

Query: 73  YTGSVDSLIGLGDIEQ-VIEDFIAVDK----RVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                 + + +G +   V++   A       R+            R   + L+NL     
Sbjct: 86  MAELAPAQVEVGPLVTGVLQGLSARASEARVRLVARGDATVEADPRRLEEALVNLVANGI 145

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            + P GG+V + V  S       ++  G+     +   ++      +    + +   +V 
Sbjct: 146 EATPPGGEVAVEVLSSAEGAELVVRDTGSGI-TADALERLGTPFFSTRSGGNGLGVAHVR 204

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   +   L  E       V+ A L +
Sbjct: 205 SVIAMHGGSLRYESEPGKGTVVRATLPR 232


>gi|299069601|emb|CBJ40873.1| putative sensory histidine kinase in two-component regulatory
           system with OmpR (envZ) [Ralstonia solanacearum CMR15]
          Length = 459

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 15/146 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---SVD 78
           I HD+ +P+  +    E+L +          I     S    ++   LA+  +G   S D
Sbjct: 256 IAHDLKTPLSRLRLRAEMLTDPKASAG----IERDVDSMSAIVEQF-LAYAQSGDGESRD 310

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKV 136
            ++    +  +++ F    K V +          +     +I++NL      +   G + 
Sbjct: 311 VMVDRH-LRGLVQPFAEQGKHVALELRAGDRFRLKPTYLERIVVNLL---DNAFAYGAE- 365

Query: 137 TISVQDSKNENIFSLKINGNLARFPE 162
            + V  + +E  F+L +  + A  P+
Sbjct: 366 PVRVTTAADERSFTLTVEDHGAGIPQ 391


>gi|206560047|ref|YP_002230811.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
 gi|198036088|emb|CAR51983.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
          Length = 459

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 67/199 (33%), Gaps = 17/199 (8%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL----SSMSAIIRLKFMRLAFGYTGS 76
           H++  P+ A+    E+    D    +D  ++ +      S+  +   L+  RL  G    
Sbjct: 241 HELRIPLAALSAQAEVALRADSPADKDAALRRLATGVERSARLSAQLLELARLDAGSRAE 300

Query: 77  VDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR- 132
               + L  +  +I    D  A  +R  V    E + +  +  +I + +  +   +L   
Sbjct: 301 QHGPVDLARLVALIASDFDAAAHARRQTVRVAVEPVCVWGDLDEIAIAVRNLIDNALRYG 360

Query: 133 --GGKVTISVQDSKNENIFSLKINGNLARFP----EKFTQIVDGNVESTIDSHDIQFYYV 186
             GG+V I+   +       L+I  +    P    E+  +       +      I    V
Sbjct: 361 REGGRVEITCDGAVEAGRVRLRIADDGPGVPVDQRERIFERFYRVPGTAQPGSGIGLSLV 420

Query: 187 ILLAHENKIRLLPEIIDDH 205
             +A  +   +      D 
Sbjct: 421 ARIAESHGGAVDVTAGIDG 439


>gi|91775537|ref|YP_545293.1| histidine kinase [Methylobacillus flagellatus KT]
 gi|91709524|gb|ABE49452.1| histidine kinase [Methylobacillus flagellatus KT]
          Length = 730

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 67/163 (41%), Gaps = 24/163 (14%)

Query: 21  RICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           R  H+  +P+  I N L +L+      GI +  + ++          +  +     Y+G 
Sbjct: 511 RFVHETSTPLSTIKNYLAILEQKMLLNGIPNRDIAIVNEEIDRVGSLIGNL-----YSGE 565

Query: 77  VDSLIGLGDIEQVIEDFIAVDK---------RVQVSWTGEKI---DLSRERAKILLNLFM 124
            + +    DI Q+I+D +A+ +         +V ++          +  +  ++L+NL  
Sbjct: 566 QEHIAASTDINQLIQDLLALHRQTYLQPAGIKVTLNLYPNLPKITTIPYQVRQVLVNLIR 625

Query: 125 VAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKF 164
            A  ++P GG+++IS      S +     ++I+      PE  
Sbjct: 626 NAAEAMPEGGELSISTFLENQSGSGQGILIQISDTGPGIPESV 668


>gi|159038627|ref|YP_001537880.1| histidine kinase [Salinispora arenicola CNS-205]
 gi|157917462|gb|ABV98889.1| histidine kinase [Salinispora arenicola CNS-205]
          Length = 369

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 26/213 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS---L 80
           H++ +P+  I   LE  ++    D+    ++    +   RL   RLA        +    
Sbjct: 154 HELRTPLATIEAYLEAAEDGVAVDDED--LQSVLRAQTARLH--RLADDIAAVSRAETHQ 209

Query: 81  IGLGDIEQVIEDFIAVD--------------KRVQVSWTGEKIDLSRERAKILLNLFMVA 126
           + L  +     D +                  R  +  + +     +   ++L NL   A
Sbjct: 210 LDLHPVRTAPADLVRDAVAAVRPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLDNA 269

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID--SHDI 181
               P GG VT+ V         ++   G        P  F +    +     D     I
Sbjct: 270 LRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHVFERFYRVDTARDRDNGGSGI 329

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +   +  R+  + +     ++  +L 
Sbjct: 330 GLAIVRAVVSAHGGRVRADNVPGGGTMVKVVLP 362


>gi|110598804|ref|ZP_01387063.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339594|gb|EAT58110.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 679

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 25/223 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIH-NSLELLDEVGIEDEVMQ---LIR---LSSMSAIIR 63
            L A+  L S + H+I +P+ AI      L  E    +E  +   L+R            
Sbjct: 461 KLTAMGELASGVAHEIRNPLNAIGVLGQRLDMEFSPAEEREEYHHLVRAIVSEVHRVNAI 520

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS-WTGEKIDLSR 113
               LKF R        +     L D  +     +  +      R  ++ ++G +I + R
Sbjct: 521 IQRFLKFAR----PPKLMLMPTDLDDFIRQYRPVLEGEAETVGVRFTLTAFSGCQISIDR 576

Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            + + +LLNL   A  +   GG+VT+            +   G      E  +QI +   
Sbjct: 577 AQMQQVLLNLVRNAVEATEPGGEVTVMTGQRTGSAFIEVADTGRGI-PEELRSQIFNLYF 635

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            S  D   +       +   +   +  E +++   +   +L +
Sbjct: 636 TSKEDGTGMGLSIANQIVQSHGGVIEVESLENRGSIFRIVLPR 678


>gi|39933571|ref|NP_945847.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39647417|emb|CAE25938.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
          Length = 1093

 Score = 37.6 bits (86), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 14/178 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80
           I HD  + +  I  +++++ +   +   +  I      A  R  +  RL   +       
Sbjct: 698 IAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAELTRLLLAFARKQPLR 757

Query: 81  IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKID----LSRERAK-ILLNLFMVAHASL 130
               ++  ++          + + ++V            + R + +  L+NL + A  ++
Sbjct: 758 PDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAM 817

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFYYV 186
           P+GGK+TI   +   +     +  G+LA        I D    +  TI S     ++ 
Sbjct: 818 PKGGKLTIETSNVVVDPDLGKR-FGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFT 874


>gi|302341474|ref|YP_003806003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301638087|gb|ADK83409.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 593

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIH--NSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFM- 67
           A + + + HD+ +P+ +I    +L L DE     +  +           RL     +F+ 
Sbjct: 365 ARIIAMLAHDMKTPLISIRGFANLLLRDEDQAHAKNRRKYAQFIEQEAARLDGFVHRFLE 424

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRERAKILL-- 120
             RL  G        + L +    + + +    R    ++             A++L   
Sbjct: 425 MSRLQDGALKLKPERLDLAERLAGVVEAVRPQFRAANVELLLEAPAPAPVEADAELLGRI 484

Query: 121 --NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
             NL   A    P GG+V +SV     E    ++  G+     E    F     G+   T
Sbjct: 485 FDNLLDNALQHSPTGGQVHVSVIAEGGEAQVRVRDQGSGIPADELSLIFEPFFRGSNSKT 544

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +       +A  +  RL+ +    H  + +  L 
Sbjct: 545 TQGYGLGLAAAKAIACLHGGRLVVDSQPGHGALFTLRLP 583


>gi|163759609|ref|ZP_02166694.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283206|gb|EDQ33492.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 875

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 69/169 (40%), Gaps = 22/169 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIR--LS 56
           MA+    N         L   I HD  + + AI  S +  L+     +     LI    +
Sbjct: 473 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLMSLRPADSSFADLIEIKRN 527

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106
           +  A + ++ + LAF    ++   +      +GD+  +++     + ++ +      W  
Sbjct: 528 ANRAAVLVRQL-LAFSRKQTMRPTVLSMTDVIGDLRMLVDRLTGTNVKLDLEFGRDLWLV 586

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +      E+   L+NL + A  ++P GG +T+  ++ + + + SL   G
Sbjct: 587 KTDLGQFEQV--LINLAVNARDAMPEGGTITVRTRNVEADEVESLNHRG 633


>gi|197116896|ref|YP_002137323.1| GAF domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086256|gb|ACH37527.1| sensor histidine kinase, GAF domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 689

 Score = 37.6 bits (86), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 64/178 (35%), Gaps = 14/178 (7%)

Query: 22  ICHD----IISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-S 76
           I HD    +   IG +  +L  + E     + +  +  ++  A    + + LAF     +
Sbjct: 464 IAHDFNNLLTGMIGYVSLALMTIKEEDPATKYLDQVVSAADRAADLTQRL-LAFSRKQIN 522

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------KILLNLFMVAHAS 129
               + L  I   +   ++     ++    E  +             ++++NL   A  +
Sbjct: 523 HPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPSEGMLPVVADSSQIDQMVMNLVTNARDA 582

Query: 130 LPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           +P GG +TI+ +  +    +      G++  +           ++    +H ++ ++ 
Sbjct: 583 MPTGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDTGTGMDEATRAHVLEPFFT 640


>gi|257093279|ref|YP_003166920.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045803|gb|ACV34991.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 509

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 76/225 (33%), Gaps = 18/225 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ---LIRLS 56
           A++    +S+  L   + S + HD+ +P+ ++    + L   +  +++  ++   +IR  
Sbjct: 267 AQDSELQVSAERLRTSILSSLSHDLRTPLTSLVGLADTLVHRQPALDEGAIETAAIIRDQ 326

Query: 57  SMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKI 109
           + +        L+  RL  G            +I       +A     +++ +    +  
Sbjct: 327 AHAMHHLMSNLLEMARLQAGSITLNKEWQPFEEIVGSSTRLLAGLLASRKLDIQVPRDLP 386

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +     ++L NL   A    P G ++ +  +        ++  +G      R  + 
Sbjct: 387 LVDFDAVLLERVLCNLLENAAKYSPPGARIEVLARTRGEALEIAVGNDGRGFPVDRIDQV 446

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           F     G  E  +    +       +   +   ++ E       V
Sbjct: 447 FDLFARGEREPAVAGTGLGLAICKAIVEAHGGTIVAENRPGGACV 491


>gi|253701298|ref|YP_003022487.1| histidine kinase [Geobacter sp. M21]
 gi|251776148|gb|ACT18729.1| histidine kinase [Geobacter sp. M21]
          Length = 656

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 44/112 (39%), Gaps = 3/112 (2%)

Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
           T  +I +  ++ + + +NL + A A++ RGGK+ +S Q+ ++         NG      E
Sbjct: 539 TLPEIMVDGDQLRQVAINLILNAGAAMQRGGKLVVSTQNGEDNCVSLKFSDNGAGI-AAE 597

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +    + +    +       +  ++  ++  E        +   L 
Sbjct: 598 HMERIFEPFFTTKVKGTGLGLAITRQIVEQHHGKIGIESEIGAGTTVEVRLP 649


>gi|209884541|ref|YP_002288398.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
 gi|209872737|gb|ACI92533.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
          Length = 846

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 22  ICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGY-TGSV 77
           I HD  + + AI  + + LL+     D   Q I     +A      +R  LAF       
Sbjct: 477 IAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQLLAFSRRQTLR 536

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKILLNLFMVAHA 128
             ++ LGD    +   +     ++V++        W         E+   ++NL + A  
Sbjct: 537 PQVLDLGDALSDLTMLLKRLIGEKVKLDVIHGRDLWPVRVDVSQFEQV--IVNLAVNARD 594

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           ++P GGK+ +   +   + I  L   G        + +I  G+  + +  
Sbjct: 595 AMPEGGKLVVKTSNVAAQEIGRL---GIKEMPAADYVRIDVGDSGTGMPP 641


>gi|146341889|ref|YP_001206937.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194695|emb|CAL78720.1| Putative two-component sensor histidine kinase with multiple PAS
           domains and a CheY-like response regulator receiver
           domain [Bradyrhizobium sp. ORS278]
          Length = 843

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           M++V  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 455 MEMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 514

Query: 69  LAFGY-TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118
           LAF         ++ LGD    +   +     ++V++        W  +      E+   
Sbjct: 515 LAFSRRQTLRPQVLDLGDALSDLTMLLRRLIGEKVKLDLSHGRDLWPVKVDVSQFEQV-- 572

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ++NL + A  ++P GGK+++   +   E        G
Sbjct: 573 IVNLAVNARDAMPDGGKLSVRTANVTAEETAQAAYKG 609


>gi|53716381|ref|YP_106230.1| sensory box sensor histidine kinase [Burkholderia mallei ATCC
           23344]
 gi|52422351|gb|AAU45921.1| sensory box sensor histidine kinase [Burkholderia mallei ATCC
           23344]
          Length = 358

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 162 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 218

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 219 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 278

Query: 149 FSLKING 155
            +++  G
Sbjct: 279 IAIEDTG 285


>gi|297569444|ref|YP_003690788.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925359|gb|ADH86169.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 484

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN-----SLELLDEVGIEDEVMQLIRLSSMSAII 62
            S  L  L  + + + H+I +P+G I +        +  E    + + ++I   +     
Sbjct: 261 DSEKLATLGRMVASVSHEIKNPLGIIRSTAAILGKRVKQEAPGNEHLAEIIVSETGRLDG 320

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------DKRVQVSWTGEKIDLS 112
            ++   L F              I QVI                +  +++      + + 
Sbjct: 321 IVREF-LDF--ARPQTLHSSPEFINQVIRQAFTFLAPELQRRGIETVLELDEGLPPLAID 377

Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           RE+  + LLN+ + A  ++P GG +T+  +  + + +  +   G   +  E+
Sbjct: 378 REQIYRALLNIMLNAIQAMPGGGTLTLRSRRRRGDQLVEIADTGPGIKEEER 429


>gi|118579601|ref|YP_900851.1| histidine kinase [Pelobacter propionicus DSM 2379]
 gi|118502311|gb|ABK98793.1| histidine kinase [Pelobacter propionicus DSM 2379]
          Length = 527

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 19/142 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLK----FMRLAFGYTG 75
           HD  + + AI    E+       DE     + +I  S M A   ++    F R     + 
Sbjct: 156 HDFNNILTAILGYSEIARLRAAHDEKLAECLDIIHDSGMKAASLVRQLLIFSR----KST 211

Query: 76  SVDSLIGLGDI----EQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128
               ++ +  +     +++   I  D  + +       ++     +  +I++NL + A  
Sbjct: 212 LEPQVVDIRSLIDNMAKILARVIGEDVILGLQTESPVGNILVDPAQVEQIIMNLVVNARD 271

Query: 129 SLPRGGKVTISVQDSKNENIFS 150
           ++P+GG VTI  +D + ++ ++
Sbjct: 272 AMPQGGTVTIRAEDVELDSSYT 293


>gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 919

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           S I H++ +P+ A+  +LELL       E   LI  +S SA   +
Sbjct: 411 SMISHELRTPMNAVIGALELLSLADKSGEERDLIETASTSANNLI 455


>gi|325116385|emb|CBZ51938.1| putative 3', 5'-cyclic nucleotide phosphodiesterase [Neospora
           caninum Liverpool]
          Length = 1359

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 25/99 (25%)

Query: 4   NICFNLSSMDLVALLCSRICHDI-------------ISPIGAIHNSLELLDEVGIEDEVM 50
            +  +L++ DLVAL+ + +CHDI              SP+G I+N + +L+         
Sbjct: 881 ELASSLTAPDLVALIVAALCHDIGHQGKNNAFYIASRSPLGIIYNDISVLENFHASLTFK 940

Query: 51  QLIRLSSMSAIIRL----KF----MRLAFGYTGSVDSLI 81
            L    +     R+    +      RL FGY  S++  +
Sbjct: 941 IL----ARQVAARVLPPKQMRPVGYRLIFGYPRSLEPEV 975


>gi|303245618|ref|ZP_07331901.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492881|gb|EFL52746.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 23/223 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLS-SMSAIIR 63
            S  L A+  L   I H+I +P+ AI    N+L    ++G        I LS S      
Sbjct: 260 KSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGEASREKASIILSESRRLDEI 319

Query: 64  LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDL--- 111
           LK    F R     T S    + L D+ +     +          V +  +         
Sbjct: 320 LKDITNFAR----PTVSRPGEVDLADVARRTTALMRHALESQGITVTLDLSPNAPVARGD 375

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                + L+N    A  ++P GG + +S        + S+  +G     P+   Q+ +  
Sbjct: 376 PETLTQCLVNCLKNAMEAMPDGGHIMVSTGLRDGRALLSVTDDGPGI-PPDILPQVFNPF 434

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +  +    +  E +  +   +   L 
Sbjct: 435 FTTRDKRAGLGLAMTKKILEDLGGSVELESVPGNGTTVVLSLP 477


>gi|258593742|emb|CBE70083.1| putative Multi-sensor signal transduction histidine kinase
           precursor [NC10 bacterium 'Dutch sediment']
          Length = 557

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 22/174 (12%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRL 69
              L + + H++ +P+ AI   +EL+ E G      QL+ +    A  RL     +F+  
Sbjct: 339 AGQLAAGLAHEVRNPLAAISGCIELIKEAGTARP--QLLDIVLREAE-RLKLVTGQFLDF 395

Query: 70  AFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLN 121
           A     S      +  + +   ++E        V  S   E  ++       +  + L N
Sbjct: 396 AKPTLASQKQCNLVALVAEAVSLLEKSCDSAHPVTFSIQREAEEVMAAGDPDQLKQALWN 455

Query: 122 LFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           L + A  ++  GG+++        ++  N     L   G     PE+  +I D 
Sbjct: 456 LGLNAIQAMQMGGRLSFVIRRHGSENGDNWVGIELTDTGQGI-PPEEVERIFDP 508


>gi|255263567|ref|ZP_05342909.1| PAS/PAC sensor hybrid histidine kinase [Thalassiobium sp. R2A62]
 gi|255105902|gb|EET48576.1| PAS/PAC sensor hybrid histidine kinase [Thalassiobium sp. R2A62]
          Length = 677

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 30/139 (21%)

Query: 24  HDIISPIGAIHNS-LELLDEVGIEDEVMQLIRLS----SMSAI---IRLKFMRLAFGYTG 75
           HD  + + A+    LEL  E   +D+  +LI  +       A      L F R A     
Sbjct: 296 HDF-NNLLAVTLGNLELSLETSQDDDKRELIENAIEATMRGASLTKNLLSFARRA----H 350

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKILLNLF 123
              + I L    Q+I + +    RV               W  E    S E A  L+NL 
Sbjct: 351 LEPTHINLN---QIIRNTMTWGARVLPETVIIENSLAAELWDVELDPTSMENA--LINLL 405

Query: 124 MVAHASLPRGGKVTISVQD 142
           + A  ++P GGKVTI   +
Sbjct: 406 LNARDAMPEGGKVTIKTAN 424


>gi|298528785|ref|ZP_07016189.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512437|gb|EFI36339.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1065

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 11/127 (8%)

Query: 24  HDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + +  +  ++E LL +   +      +Q I  S   +   ++ + LA         
Sbjct: 707 HDFNNLLQTMSGNIEFLLQDKSADHPDISRLQAISRSIARSASLVQQLLLAGRKAKFQKV 766

Query: 80  LIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPR 132
            + L     ++ Q++E  +     +++        ++ +  +I   LLNL   A  ++P+
Sbjct: 767 QVDLNEELQEVFQMLERVVPKMIALELHLDPYIEPIAADPVQIEQVLLNLANNAVDAMPQ 826

Query: 133 GGKVTIS 139
           GG++   
Sbjct: 827 GGRLAFE 833


>gi|94265363|ref|ZP_01289117.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454116|gb|EAT04445.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 700

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 37  LELLDEVGIEDEVMQL--IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--DIEQVIED 92
           L LLD    +     L  IR ++  +    + + LAF    S    +     DI ++   
Sbjct: 351 LMLLDMAPDDPGRENLQEIRKAAKRSADLTRQL-LAF----SRQQPVAPRVVDINEITGG 405

Query: 93  FIAVDKR-----VQVSWTGEKIDLS----RERA-KILLNLFMVAHASLPRGGKVTISVQD 142
            + + KR     +++ W              +  ++L NL + A  ++   G++TI+  +
Sbjct: 406 MLKMLKRLIGEDIELRWQPGPDLWPVRIDPSQVDQLLANLVVNARDAISETGQITITTAN 465


>gi|149182171|ref|ZP_01860653.1| Sporulation kinase [Bacillus sp. SG-1]
 gi|148850122|gb|EDL64290.1| Sporulation kinase [Bacillus sp. SG-1]
          Length = 412

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           ++L+NL   A  ++P GG+VT+  +   ++  + S++  G      E   Q+      + 
Sbjct: 309 QVLINLIKNAMEAMPAGGEVTVKAEMGEEDTVLLSIRDEGEGIS-KENLEQLGTPFHTTK 367

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D   +       +  E+   +  + ++     +S  L 
Sbjct: 368 SDGTGLGLMVSFKIIEEHSGTIRYDSVEGQGTTVSITLP 406


>gi|196231769|ref|ZP_03130626.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chthoniobacter flavus Ellin428]
 gi|196224241|gb|EDY18754.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chthoniobacter flavus Ellin428]
          Length = 885

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 28/159 (17%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRL 69
           L S + HD+ + +  I  +  LL E  + DE  + I  +  ++  R        L F R 
Sbjct: 517 LASGVAHDLNNILSPIILATPLLVEE-MSDEARRSIVQTVQTSARRGVEIVRQLLTFAR- 574

Query: 70  AFGYTGSVDSLIGL------GDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKI 118
                G     + +       +I  + E+       + V      WT        ++   
Sbjct: 575 -----GVRVERMPVNCENLIAEIVSIAEETFPKSIAITVKAKPGLWTALGDATQLQQV-- 627

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           LLNL + A  ++P GG + I  ++   ++ F+    G  
Sbjct: 628 LLNLAINARDAMPSGGSLNILARNFLVDDSFASMTPGAK 666


>gi|302038351|ref|YP_003798673.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300606415|emb|CBK42748.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 809

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           I HD  + +  I++  ELL     +       M  IR +   A    + + LAF    + 
Sbjct: 442 IAHDFNNLLTIINSWAELLTGEPGQTTRTQRGMAQIREAGNKATALTRQL-LAF----TR 496

Query: 78  DSLIGLG---------DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMV 125
             ++            DI ++++  I  D ++ ++       +     +  ++++NL + 
Sbjct: 497 HQIVERQPLNLNDRVTDIVELMKRVIGEDIQLALTLDPALGRVKADPGQIEQVVMNLVVN 556

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI---- 181
           A  ++P GG++ +  +     +   L         P  +  +   +    +D+  +    
Sbjct: 557 ARDAMPHGGRLDVETKSVSIAHSDPLW---PNPLTPGPYVTLAVRDTGCGMDADTVAHVF 613

Query: 182 -QFYYVILLAHENKIRLLP 199
             F+    L     + L  
Sbjct: 614 EPFFTTKELGKGTGLGLST 632


>gi|290512651|ref|ZP_06552017.1| two-component system, OmpR family, sensor histidine kinase CreC
           [Klebsiella sp. 1_1_55]
 gi|289774992|gb|EFD82994.1| two-component system, OmpR family, sensor histidine kinase CreC
           [Klebsiella sp. 1_1_55]
          Length = 521

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 29/209 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70
           H++ SP+ AI  + E+L E                    MQL+    +    RL+  RL 
Sbjct: 312 HELKSPLAAIRGAAEILREGPPPAVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 369

Query: 71  FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
                     + +  + Q +    D     K + + W    + ++ +    A+ L NL  
Sbjct: 370 I-----KPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 424

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181
            A    P GG++ ++ +    E   S+  NG           F +      E    S  +
Sbjct: 425 NAIDFTPPGGEIALAAEKRNEEVQLSVIDNGRGIPDYALERIFERFYSLPREDGHKSSGL 484

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +V  +A  +   +      +  VV +
Sbjct: 485 GLAFVREVARLHHGDINLHNRPEGGVVAT 513


>gi|87307720|ref|ZP_01089863.1| sensor protein HYDH [Blastopirellula marina DSM 3645]
 gi|87289334|gb|EAQ81225.1| sensor protein HYDH [Blastopirellula marina DSM 3645]
          Length = 278

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 31/63 (49%)

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           VQ+      + +  +  ++LLNL + A  ++P+GG++ + +     E + SL +  +   
Sbjct: 132 VQLDDVPPALAIGNQIQQVLLNLLINARQAMPKGGRLVVRLSHDAAEGVVSLMVRDSGTG 191

Query: 160 FPE 162
            P 
Sbjct: 192 IPA 194


>gi|323343418|ref|ZP_08083645.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269]
 gi|323095237|gb|EFZ37811.1| hypothetical protein HMPREF0663_10180 [Prevotella oralis ATCC 33269]
          Length = 1348

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 18/116 (15%)

Query: 117  KILLNLFMVAHASLPRGGKVTISVQ------DSKNENI----FSLKINGNL-----ARFP 161
            KIL NL + A    P GG V +SV+       S + +       L++  +      +  P
Sbjct: 924  KILNNLLLNAVKYTPMGGHVNVSVELERRLIGSGDASTTRHFLVLEVEDDGNGVEESLLP 983

Query: 162  ---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++F ++V G+  S I  + +   YV  L   +K  +      +  +V +  + 
Sbjct: 984  GIFDRFKRLVKGDETSKIMGNGVGLNYVKHLVDNHKGTITARNRAEKGMVFTVTIP 1039


>gi|158520884|ref|YP_001528754.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158509710|gb|ABW66677.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 905

 Score = 37.2 bits (85), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 47/229 (20%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAI---IRLK 65
           + + S I HD  + + +I    +LL        +  +    + LI  ++  A     RL+
Sbjct: 542 SQMASGIAHDFNNALSSIQGFSDLLLQSPEKFSDTPLVKRYVGLINTAARDAAQVVRRLR 601

Query: 66  -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTG--------EKIDL 111
            F R       S +  I   D+ ++I++ +A+ +     + Q             E++  
Sbjct: 602 KFYR------PSDEETIEPVDVNRLIKEAVALTEPVWKHKTQARGAPIIVETRFQEQLSA 655

Query: 112 SRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFP 161
           S  R ++   L NL   A  ++P GG ++   +           +    +          
Sbjct: 656 SGNRTELNEVLTNLIFNAVDAMPEGGSLSFGTRREAGWIVLEVSDTGVGMDATVRRQCMN 715

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENK-IRLLPEIIDDHNVVL 209
             FT    G   S +    +Q     ++A     I ++ E  +    VL
Sbjct: 716 PFFT--TKGEAGSGLGLATVQ----GIVARHQGQIEIVSEPGNGTTFVL 758


>gi|331010296|gb|EGH90352.1| sensor histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 394

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 75/209 (35%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKDLQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSR---ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +R         +   L R   +  +I   L  +   ++ 
Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIRSDIKMLERIRCDHERIAQLLSNLVSNAIS 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI----QFYY 185
            G  +  + V      ++F L +       PE     +       I D+         Y 
Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDAPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIAVAHGGTLEVCSTQEQGTVFTFRMP 390


>gi|315644820|ref|ZP_07897949.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315279762|gb|EFU43063.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 535

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 8/158 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           N   +     +   I H++ +P+  +   +  L           LI      A + +   
Sbjct: 322 NTEKLVFAGQVAVSIAHEVRNPLTTVK-GMLQLANKDARLRHYDLIMSELERANLMVGEF 380

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERAK-ILL 120
            +      +V      G+I + +    A+          Q       I   R + K + L
Sbjct: 381 MILGKPQAAVLKQEDCGEILEEVLHLFAIQAELSGIEMTQCFVQNAVILCDRNQIKQVFL 440

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           N+   A  +LP GG + I +   +         NG+  
Sbjct: 441 NILKNAMEALPYGGNIHIRLDVQEGYQRVIFTDNGSGM 478


>gi|310826824|ref|YP_003959181.1| sensor histidine kinase [Eubacterium limosum KIST612]
 gi|308738558|gb|ADO36218.1| sensor histidine kinase [Eubacterium limosum KIST612]
          Length = 415

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAF 71
           S I H + +P+ A+    E+L E G + EV+         ++ R        LK  RL  
Sbjct: 198 SDISHQLKTPLAALKMYNEILQEDGADPEVLARFTDKVNDSLNRMETLIQNLLKITRLDA 257

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL----------N 121
           G       L  +  + + +        R +              A++L           N
Sbjct: 258 GAITLRPVLRPVQAMMEDLSHSFETRARRE---QKALRFSGSPAARLLYDPDWLTEAVSN 314

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS 178
           L   A      GG + +   +S      +++ NG+          F +            
Sbjct: 315 LIKNALDHTSTGGWIAVGWDESAAVTRITVQDNGSGIHPEDIHHIFKRFYRSRFSQDTQG 374

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +     + +   +K  L  E       + +    K
Sbjct: 375 AGLGLPLALAITEAHKGTLSVESSPGQGALFTMTFLK 411


>gi|189424887|ref|YP_001952064.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189421146|gb|ACD95544.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 503

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/96 (15%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 85  DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ 141
           D + + +  +  +  +Q+      + ++ +     ++L NL   A  ++P GG +TI+  
Sbjct: 327 DSQLLAQKLLQKNTTLQLDLAETALIITADEVLLQQVLFNLITNARDAMPTGGTITIATA 386

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           +   +   +    G   R P  +  ++  +    I 
Sbjct: 387 ERLLDEQSTG---GAKDRVPGTYAVLMVQDTGQGIP 419


>gi|220926142|ref|YP_002501444.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219950749|gb|ACL61141.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 699

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 48/142 (33%), Gaps = 20/142 (14%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74
           HD  + + A+  SLELL       +D  ++L+  +   A          L F R      
Sbjct: 347 HDFNNLLMAVLGSLELLGKRLDPKDDLALRLVDNAIQGARRGAALTQRLLAFAR----RQ 402

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKI-LLNLFMVAH 127
                 + +  + + +   +       V            I +   + ++ LLNL + A 
Sbjct: 403 ELRPQTVAVAGLVEGMRGLLERALGPGVDIVTLLPADLPPIRIDANQFELALLNLAVNAR 462

Query: 128 ASLPRGGKVTISVQDSKNENIF 149
            ++P GG +T+           
Sbjct: 463 DAMPLGGTITLDGSGVAEAPGL 484


>gi|167718216|ref|ZP_02401452.1| sensor histidine kinase [Burkholderia pseudomallei DM98]
          Length = 264

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91
           +D   +  +++ LI  S   A+ R++        F R     +G   +   L    +   
Sbjct: 48  IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 102

Query: 92  DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     E   L        + +++ +NL + A  S+   G +TI      +
Sbjct: 103 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 162

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203
               S+   G      +   +I D    +            I   +   +  R+  E   
Sbjct: 163 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 221

Query: 204 DHNVVLSALLE 214
                L+  L 
Sbjct: 222 GRGSTLTVTLP 232


>gi|220915684|ref|YP_002490988.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953538|gb|ACL63922.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 237

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 73/208 (35%), Gaps = 10/208 (4%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEV--GIEDEVMQLIRLSSMSAIIRLK-FMRLAFG 72
           L  + + H++ +P+ A+   ++L L         E ++ +  +       L+ ++  A G
Sbjct: 26  LDGATLAHELKNPLTAVKALVQLGLANPREAASHERLEQVARAVERMERILRDYLASARG 85

Query: 73  YTGSVDSLIGLGDIEQ-VIEDFIAVDK----RVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                 + + +G +   V++   A       R+            R   + L+NL     
Sbjct: 86  MAELAPAQVEVGPLVTGVLQGLSARASEARVRLVARGDATVEADPRRLEEALVNLVANGI 145

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            + P GG+V + V  S       ++  G+     +   ++      +    + +   +V 
Sbjct: 146 EATPPGGEVAVEVLSSAEGAELVVRDTGSGI-TADALERLGTPFFSTRSGGNGLGVAHVR 204

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   +   L  E       V+ A L +
Sbjct: 205 SVIAMHGGSLRYESEPGKGTVVRATLPR 232


>gi|149918762|ref|ZP_01907249.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1]
 gi|149820363|gb|EDM79779.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1]
          Length = 573

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 71/213 (33%), Gaps = 20/213 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S + HD  + +  +  ++E+L+E    DE  QL+     +        R   G+    
Sbjct: 216 VASGVAHDFNNSLLVLQGTIEMLEEPMPADERGQLVSEGVAAISAAAATTRQLLGFVRRE 275

Query: 78  DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK-IDLSRERA---KILLNLFMVAHA 128
            + +       VIE F+    R     V ++   +   DL    +   +I+LNL + A  
Sbjct: 276 RAELSACSPGPVIERFVRTMARVLPESVSLAAAVQPCPDLPIPASTLDQIILNLVLNARD 335

Query: 129 SLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQ---IVDGNVESTIDSHDIQ 182
           ++   G + +      +   + I      G      E+  +      G   + +    I 
Sbjct: 336 AIDGQGTILVGCARAANGDGQLIVRDTGEGMDPAVAERVFEPFFSTKGEGGTGLGLATIH 395

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 L  ++  ++  +         +    +
Sbjct: 396 -----ELVRQSGGQIHLDTAPGEGSTFTFAWPE 423


>gi|320107742|ref|YP_004183332.1| integral membrane sensor signal transduction histidine kinase
           [Terriglobus saanensis SP1PR4]
 gi|319926263|gb|ADV83338.1| integral membrane sensor signal transduction histidine kinase
           [Terriglobus saanensis SP1PR4]
          Length = 629

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 84/209 (40%), Gaps = 26/209 (12%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR--LSSMSAII 62
           S  L A+  L + + H++ +PI A+   LELL     +    +  ++ +    S M  + 
Sbjct: 392 SRRLAAIGRLTAGVGHEVKNPINAMVVHLELLRGKLAQPSNGEAALRHVEILSSEMQRLD 451

Query: 63  RL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLS 112
           R+      F R              LGD+ + + D  +      D R+Q + T  ++ + 
Sbjct: 452 RVVQALADFSR----PIDLHLHDHDLGDLMRSVLDLASAEVEQNDVRIQFTATAPRLPVR 507

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     + +LN+F+ A  ++P GG++ +S+   +   + S++  G+     E   +I D
Sbjct: 508 VDADLIRQAILNIFLNAVQAMPDGGELRLSLYVDQQSAVLSIQDEGDGIPV-EARPRIFD 566

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLL 198
               + +    I       +   +   L 
Sbjct: 567 LYFTTKVRGSGIGLAMTYRIVQLHGGALE 595


>gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 399

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 77/226 (34%), Gaps = 35/226 (15%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS-------AII 62
           D  AL+     H++ +P+ ++H SLELL       ++ +  +L+ ++  +       A  
Sbjct: 174 DFTALVS----HELRTPLTSVHGSLELLASGRFGEMQAQASRLVEIAVKNTDRLVRLAND 229

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRER-- 115
            L   R+  G      + + L D+ +     IAV+   +     +    + + +  +   
Sbjct: 230 VLDLSRVQSGQLRLRPAPVELADVVE--NAVIAVEGTAERCHVPLVTRKDPVTVRGDADR 287

Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIV 168
             +++ NL   A    P G  V +      +     ++ +G         R  E F Q+ 
Sbjct: 288 LVQVVTNLLANAVKVSPPGQPVEVGCSVEGSVARVYVRDHGMGITDDEVKRIFEPFVQL- 346

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            G          +       +   +   +  E         + +L 
Sbjct: 347 -GAKSG---GAGLGLAITRGIVESHGGTIAVESEAGIGSTFTVILP 388


>gi|116695400|ref|YP_840976.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113529899|emb|CAJ96246.1| signal transduction histidine kinase [Ralstonia eutropha H16]
          Length = 680

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 68/166 (40%), Gaps = 21/166 (12%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS----AIIRLK 65
              L + + H+I +PI  I  +L++  E      E     ++LI              L+
Sbjct: 450 AGHLTAGVAHEINNPIAVIQGNLDVAREILGPAAEPVRHELRLIDEQVRRIHLLTNRLLQ 509

Query: 66  FMR-LAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKID-LSRERAK- 117
           F+R  A+   G+++  +  G++     D +         RV++     +   +SR   + 
Sbjct: 510 FVRPEAY--AGNME-RLDAGEVAAGCVDLVQHMLKGASIRVELDCLATRQVRISRSELQQ 566

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPE 162
           +++NL   A  ++P GG +T+  +D         ++  G+  R  +
Sbjct: 567 VVVNLLTNAIHAMPEGGTLTLGTRDWDGQGVTLHVRDTGHGIREED 612


>gi|322417612|ref|YP_004196835.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320123999|gb|ADW11559.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 486

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 25/218 (11%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL---------IRLSSMSAIIRL 64
           L  L  S + H++ +P+G + N++  L  V  + +             I  S       L
Sbjct: 258 LGQLSGS-LSHELRNPLGVMSNAVYFLKAVHADADETTKEYLGIIGSEIANSQRIITDML 316

Query: 65  KFMRLAFGYTGSVDSLIGLGD-IEQVIEDF-IAVDKRVQVSWTGEKIDL---SRERAKIL 119
            F R          + +  G+ + Q ++   I  +  V V+   E   L     +  ++L
Sbjct: 317 DFAR----TKPPKRTPVSPGELVRQSLKGCSIPENVTVAVAVQEEPPILNVDPLQMGQVL 372

Query: 120 LNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            N  + A  ++  GG + ++ +    +E   S+   G     PE   ++       T   
Sbjct: 373 TNFIINAVQAMSNGGSLQLAARLIPGDEMEISVTDTGEGIS-PENRVKLF--QPLFTTKP 429

Query: 179 HDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V+   L   N  R+  E         +  L 
Sbjct: 430 KGIGLGLVVCKNLVEANGGRIEVESEPGKGTTFTVKLP 467


>gi|269836214|ref|YP_003318442.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269785477|gb|ACZ37620.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 477

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 22/213 (10%)

Query: 24  HDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           HD+ +P+ A+   LE     L D        + + +  + +    +     F RL +   
Sbjct: 238 HDLRTPLFALRGYLEGLEKGLDDTPEKRARYIAVAQEKAATLERLIGDLFDFTRLEYLEQ 297

Query: 75  GSVDSLIGLGDIE-QVIEDFI----AVDKRVQVSWTGEKIDLSRER---AKILLNLFMVA 126
                 + LG +  +++E F         ++ ++   E   +  +     + L NL   A
Sbjct: 298 TPNPEPLDLGALLDRLVEGFRPQADTKGVQLTLTIPPEPCWVQGDTHLLTRALSNLLDNA 357

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVE--STIDSHDI 181
               P GG+V ++ +   +  IF++   G        P  F  +  G            +
Sbjct: 358 LRYTPSGGQVRVACRTEPSGVIFTIADTGPGIPAHDLPNLFAPLYRGETSRNRRTGGAGL 417

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +   L          V +  L 
Sbjct: 418 GLTIARRILLAHGGDLSAGNGQAGGAVFTGRLP 450


>gi|76819114|ref|YP_335868.1| sensory box sensor histidine kinase [Burkholderia pseudomallei
           1710b]
 gi|76583587|gb|ABA53061.1| sensory box sensor histidine kinase [Burkholderia pseudomallei
           1710b]
          Length = 358

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 162 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 218

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 219 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 278

Query: 149 FSLKING 155
            +++  G
Sbjct: 279 IAIEDTG 285


>gi|67640760|ref|ZP_00439555.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|121596756|ref|YP_991312.1| sensor histidine kinase [Burkholderia mallei SAVP1]
 gi|124381600|ref|YP_001025722.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126445836|ref|YP_001077802.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|166999401|ref|ZP_02265240.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|254176071|ref|ZP_04882729.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254201107|ref|ZP_04907472.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|254205077|ref|ZP_04911430.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|254359197|ref|ZP_04975469.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|121224554|gb|ABM48085.1| sensor histidine kinase [Burkholderia mallei SAVP1]
 gi|126238690|gb|ABO01802.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|147748719|gb|EDK55794.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|147754663|gb|EDK61727.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|148028384|gb|EDK86344.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|160697113|gb|EDP87083.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|238521533|gb|EEP84984.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|243064472|gb|EES46658.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|261826403|gb|ABM99272.2| sensor histidine kinase [Burkholderia mallei NCTC 10229]
          Length = 389

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|86750380|ref|YP_486876.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86573408|gb|ABD07965.1| periplasmic sensor hybrid histidine kinase [Rhodopseudomonas
           palustris HaA2]
          Length = 704

 Score = 37.2 bits (85), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--------LLNLFMVAHASLPR 132
           + LGD      D +    R  ++   E         +I        LLNL + A  ++P 
Sbjct: 409 VDLGDAVMKFADVLRQSVRSDIAIAIEPPTEP-VVVQIDPNEFEIALLNLALNARDAMPD 467

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA 158
           GG++TIS++    +N    ++ G+ A
Sbjct: 468 GGRITISIRTETLKNFGPRRLTGDYA 493


>gi|319777865|ref|YP_004134295.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171584|gb|ADV15121.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 643

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 68/179 (37%), Gaps = 23/179 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFG-------- 72
           HD  + + AI  SLELL +   +D  + +L+  + + A     L    LAF         
Sbjct: 293 HDFNNLLMAILGSLELLRKRLPDDPQLLRLLDNAVLGARRGASLTQRMLAFARRQQLDPK 352

Query: 73  ---YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128
                G +  +  L +        I     + +     ++ +   + ++ LLNL + A  
Sbjct: 353 PVDLIGLIHGMKDLLERSLGSRAIIETKFPLSLD----RVMVDESQIELALLNLCVNARD 408

Query: 129 SLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           ++P GG + IS +  +  E+  +    G             +G  E T+ +   + ++ 
Sbjct: 409 AMPGGGTIVISTRMEQVGESKEAGLAPGPYVCL--SVADAGEGMDEETL-ARATEPFFT 464


>gi|56696905|ref|YP_167267.1| sensory box sensor histidine kianse/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56678642|gb|AAV95308.1| sensory box sensor histidine kianse/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 768

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 17/132 (12%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + + AI    +LL    D+   +   +  I  ++  A   +  + LAF  +     
Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAALVSQL-LAF--SRKQTL 463

Query: 80  LIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHAS 129
              + D+   + D I      V ++V ++ + + +  S     R+  ++L+NL + A  +
Sbjct: 464 RPEVLDLRDTLADLIHLLNRLVGEKVTLTLSHDPVLKSVRADKRQLEQVLMNLVVNARDA 523

Query: 130 LPRGGKVTISVQ 141
           +P+GG++ I  +
Sbjct: 524 MPQGGEIRIETE 535


>gi|39935204|ref|NP_947480.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39649055|emb|CAE27576.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 707

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 15/122 (12%)

Query: 48  EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
               +I  +           L F R            + LGD      D +    R  + 
Sbjct: 376 RSFDMIDSAVAKGTALTRQLLSFSR----RHNVAAKAVDLGDAVTKFADVLRQSVRSDIG 431

Query: 104 WTGEKID-------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              +             E    LLNL + A  ++P GG++TIS++    +N    K+ G 
Sbjct: 432 IMIDPPAEPVVVMIDPNEFEIALLNLALNARDAMPDGGRITISIRTETLKNFGPRKLTGT 491

Query: 157 LA 158
            A
Sbjct: 492 YA 493


>gi|167923509|ref|ZP_02510600.1| sensor histidine kinase [Burkholderia pseudomallei BCC215]
          Length = 389

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|303246915|ref|ZP_07333191.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302491622|gb|EFL51505.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 583

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 26/156 (16%)

Query: 19  CSRICHDIISPI---GAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70
            +R+ H+I +P+   G   N +   L E   + E + +I   +      L     F R A
Sbjct: 375 AARLTHEIKNPLMLMGGFANQVRRHLPEKAADAEKLGIIEEEAKRLESLLTEVRDFTRPA 434

Query: 71  FGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRERAKI---L 119
                     I   D           + E   +    V     G+   +  + A++    
Sbjct: 435 -------PPQIEPRDFNATVKESLAIMAEALSSRSIEVTSRLDGDMPPVPHDAARLKQVC 487

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +NL   A  ++  GGK+TI  Q    +    +   G
Sbjct: 488 INLIKNAAEAMETGGKLTIVTQAVGGKARLIVADTG 523


>gi|152965197|ref|YP_001360981.1| integral membrane sensor signal transduction histidine kinase
           [Kineococcus radiotolerans SRS30216]
 gi|151359714|gb|ABS02717.1| integral membrane sensor signal transduction histidine kinase
           [Kineococcus radiotolerans SRS30216]
          Length = 396

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 55/158 (34%), Gaps = 12/158 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS------AIIRLKFMRLAF 71
           L + + H++ +P+ A+H  +E L +   E +   L    + +          L   RL  
Sbjct: 161 LVANVSHELRTPVSALHAVMENLVDGVSEPDHETLATALAQTERLGRLVEQLLDLSRLDA 220

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKI---LLNLFMV 125
           G        + L          +++     R  +      + +  + A++   + NL   
Sbjct: 221 GAVALDREELALEPFLAQATRAMSMTGRDVRFVLDVDPPGLSVDVDSARLHQVVANLLDN 280

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           A    P GG+V +S          S++  G      ++
Sbjct: 281 ASRHSPPGGEVFVSAHAVGQVVRISVRDQGPGIPDADR 318


>gi|148262167|ref|YP_001228873.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146395667|gb|ABQ24300.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 372

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 77/223 (34%), Gaps = 34/223 (15%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLK-----F 66
           ++ A+L     H+I +P+G+I  + E+L D+    D   + I +       RL      F
Sbjct: 153 EMAAVLA----HEIRNPLGSIRGTAEILKDDYNPGDPKHEFIEIQIKETE-RLNRVVEDF 207

Query: 67  MRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKR---VQVSWTGE------KIDLS 112
           + +A            L      D  + I   +A D R   +++           + D  
Sbjct: 208 LHMA------RPQPADLRPCPVQDELETIVTLVANDARDRQIKLVLQPPPFPVIIRADGE 261

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGN 171
           + R +  LN+ + A  + P  G V IS    +        + +G      E   +I +  
Sbjct: 262 KLR-QAFLNIIINALQATPPSGSVIISTTIYQAALCEIRFRDSGPGI-DAETLGRIFEPF 319

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  D   +       +   +   ++ E    H   ++  L 
Sbjct: 320 FTTKPDGTGLGLAITRKIIESHGGTMMVESESGHGTTVTVRLP 362


>gi|255600751|ref|XP_002537525.1| sensory transduction histidine kinase, putative [Ricinus communis]
 gi|223516032|gb|EEF24858.1| sensory transduction histidine kinase, putative [Ricinus communis]
          Length = 429

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 22/225 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMS 59
           M++ +    +  +L  LL   + HD+ +P+  +  S+E+LD E  ++  ++Q I    M 
Sbjct: 208 MSEALARTEADRNL--LLGG-VSHDLRTPLARLRLSVEMLDQETDLKSGMVQDIDD--MD 262

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
           AIIR +F+    G  G V+    +   I  + E +    +R  +          R  A  
Sbjct: 263 AIIR-QFLAYVRGAEGEVEVTGDVNQLIRDISERYERQGRRPTLELGRVPQFAFRPLAMQ 321

Query: 117 KILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVD 169
           +++ NL      +   GG  VT+  +   +  + S+   G         R    F ++  
Sbjct: 322 RLITNLV---DNAYHYGGSSVTVQTRVKDSRLMLSVLDRGPGLPEGETERLLRPFERLDT 378

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +A  +   +  +   D  +    ++ 
Sbjct: 379 SRGREG--GSGLGLAIATRIARLHDGEIKLKNRKDGGLEAMVIIP 421


>gi|126442901|ref|YP_001063306.1| Signal transduction histidine kinase [Burkholderia pseudomallei
           668]
 gi|126222392|gb|ABN85897.1| signal transduction histidine kinase [Burkholderia pseudomallei
           668]
          Length = 389

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|320333682|ref|YP_004170393.1| histidine kinase [Deinococcus maricopensis DSM 21211]
 gi|319754971|gb|ADV66728.1| histidine kinase [Deinococcus maricopensis DSM 21211]
          Length = 308

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 6/191 (3%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-RLAFGY----TGS 76
           + H+  +P+ AI   LE L+     +     +R     A   ++ +  LA G+      +
Sbjct: 109 LSHEFRTPVAAIKGVLEALEYEMPMEMQRSFVRQGLAEAERLVRLVDDLAVGFRPTRART 168

Query: 77  VDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
                 +   E+++  D  A   R+             +  ++LLNL   A    PR G 
Sbjct: 169 QPLAESVARAERLLGADLAASSVRLTREGDALVRADPDKLLQVLLNLVENAARYGPRPGT 228

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195
           V +  ++       ++  +G   +  E   +       +T +   +  Y V  +      
Sbjct: 229 VRVEARERGQWVEVAVLDDGPPIQDTEDLFRAHTRGKGATGNGSGMGLYIVRSIVQGWGG 288

Query: 196 RLLPEIIDDHN 206
           +   E     N
Sbjct: 289 QAWAERRGSAN 299


>gi|283781767|ref|YP_003372522.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440220|gb|ADB18662.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 252

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 24/169 (14%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSA 60
              S  +L AL  S + H+I +P+  I  ++ELL E         E   +  I + S   
Sbjct: 16  LRASYQELAALAGS-LAHEIKNPLSVIRMNMELLAEDFATPQTPKERRALAKIEMVSRQC 74

Query: 61  IIRLK-----FMRLAFGYTGSVDSLIG-LGDIEQVIEDFIAVDKRVQ-------VSWTGE 107
             RL+     F+R  F   G +D  +G L +    + D      R               
Sbjct: 75  T-RLENLLNDFLR--FSRAGRLDIRLGNLNEQIARVLDLFDAQSRENGVEVIRYFDHDLP 131

Query: 108 KIDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            + +  E  +  L NL   A  ++P GG++    + ++N     L   G
Sbjct: 132 SVSIDPEALQAALVNLVKNALEAMPAGGQLVARTRITRNGVALDLIDTG 180


>gi|254293645|ref|YP_003059668.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042176|gb|ACT58971.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 465

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 20/162 (12%)

Query: 17  LLCSR-----ICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIR 63
           ++ SR     I HD+ SP+  + N LE          D  G  +  ++ +     +    
Sbjct: 239 MIASRYSGDAIAHDLRSPLARLRNHLESSLAQTGDRQDFEGALEYSIEEVDRVLETFNAI 298

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRER-AK 117
           L+  ++  G +G+ D       + +V E + AV +  Q++++ +     ++   +    +
Sbjct: 299 LRLSKVQGGQSGTFDRFSLSEQVVEVAEIYEAVCEEAQLAFSSDIKSNLELHADKSLIMQ 358

Query: 118 ILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLA 158
           ++ NL   A    P GG V  +  +    E   S+  +G   
Sbjct: 359 LIFNLMDNAVKYTPAGGAVKLVLRRRRNGEVELSVLDSGPGI 400


>gi|153004358|ref|YP_001378683.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152027931|gb|ABS25699.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 519

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           + +A+L     H++ +P+GAI  +L L    D+      + +  R  +      L+  R+
Sbjct: 157 EFLAMLG----HELRNPLGAILLALPLFRSSDDERPRGIIDRQARRLARLVDDLLEVSRV 212

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRE-RA-KILLN 121
             G       ++ L ++       +A   R+Q        W       +   R  +I+ N
Sbjct: 213 TRGQITLRREVVDLNELVGEAVAGLAEAARLQGLDLAVSLWREPVPIHADPVRVEQIVAN 272

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           L   A    P GG+VT+ V     +    +  +G
Sbjct: 273 LLANALKYTPSGGRVTVLVARRNEKASIRVSDDG 306


>gi|115377898|ref|ZP_01465084.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310823059|ref|YP_003955417.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365113|gb|EAU64162.1| sensor histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309396131|gb|ADO73590.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 513

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 72/178 (40%), Gaps = 32/178 (17%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQLIRLSSMS 59
           +  L A+  + +++ H++ +P+ +I  ++E+L++              E   L+   +  
Sbjct: 287 AEQLAAVGRISAQVAHEVRNPLSSIGLNVEMLEDALAHATFSDPEEARETKDLLAAVTRE 346

Query: 60  AIIRL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106
            + RL     +++R+A          +   D+ +V+   +            +V   +  
Sbjct: 347 -VDRLTDVTEQYLRMA----RPPKPTLVAEDVTEVLGSLLDFSREELERAGVQVVRHFDP 401

Query: 107 EKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +   +  +  ++    LNL   +  ++P GG++T++++    E    ++  G     P
Sbjct: 402 DTPLVMADEGQLRQVFLNLVRNSREAMPGGGRLTVTIRGIDKEVEVFVQDTGRGMPEP 459


>gi|301384628|ref|ZP_07233046.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13]
 gi|302058919|ref|ZP_07250460.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302133032|ref|ZP_07259022.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
          Length = 468

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++   +       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        D RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLTADGDGRVTQQGEAQAAYPGKPLALMRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|189425218|ref|YP_001952395.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189421477|gb|ACD95875.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 498

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 68/172 (39%), Gaps = 23/172 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS----MSAIIRLKFMR 68
           LL +   H+I +P+ ++    E+L +         + +  I  S           L++ R
Sbjct: 278 LLAAGTAHEIGTPLASVMGYAEILAQELEHNPAHADYLARIMDSCGRIDRIVKGLLEYAR 337

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDL---SRERAKILL 120
                  +V   + L  + Q   + +         ++ ++             +  ++L+
Sbjct: 338 ----PKQTVHEPVDLSLLMQATVELLQHQGFFKGIKLTMTTEPASSLASLDPHQLQQVLI 393

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKI--NGNLARFPEKFTQIVDG 170
           NL + A  ++P+GG++ ++++   ++ I  L++   G     PE   ++ D 
Sbjct: 394 NLLINASDAMPQGGEIKLALKQGADKKILLLEVWDTGTGI-APEHLGKLFDP 444


>gi|119897999|ref|YP_933212.1| osmolarity sensor protein [Azoarcus sp. BH72]
 gi|119670412|emb|CAL94325.1| probable osmolarity sensor protein [Azoarcus sp. BH72]
          Length = 461

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 7/151 (4%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           AL+ + + HD+ +P+  +   +E+      EDEV  ++        I  +F+    G   
Sbjct: 243 ALILAGVSHDLRTPLARLRLGIEM--SGAPEDEVGAMVADIEEMDRIIGQFLDFGRGSAQ 300

Query: 76  SVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
                + L ++   V E +     R+++      +  +    ++   L  +   +L   G
Sbjct: 301 EPPQALDLVELVGSVCEPYRLRGCRIELE-MPASLVTAGRALQLRRALANLIDNALRYAG 359

Query: 135 K---VTISVQDSKNENIFSLKINGNLARFPE 162
           +   + + V+    E +  +   G      E
Sbjct: 360 EDKPLLVRVERGMGEALVEVADRGPGIPENE 390


>gi|82703136|ref|YP_412702.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411201|gb|ABB75310.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 538

 Score = 37.2 bits (85), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 30/184 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + +  I N +E++ +        +++  S   A  +        L F R     
Sbjct: 289 IAHDFNNLLNVIVNGIEIIAKQAQTPTSTRML-ESMQRAAAQGTMLTQQLLTFAR----- 342

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKIDLSRERAKI-LLNLF 123
                      ++  VI  F  V +R          ++      + +     +  LLNL 
Sbjct: 343 --KQPLKQDKYNLNHVIRSFEPVLRRANKGSVEFDVKLDPLLPPVIIDAPHFEAALLNLV 400

Query: 124 MVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
           + A  + P GG +T+S +  + +E   +    G   +          G +   + +  ++
Sbjct: 401 INARDATPDGGAITLSTEQLELDEKEINELPAGRYVKV--TVKDTGTGMLPE-VAAQAVE 457

Query: 183 FYYV 186
            ++ 
Sbjct: 458 PFFT 461


>gi|323487549|ref|ZP_08092842.1| hypothetical protein HMPREF9474_04593 [Clostridium symbiosum
           WAL-14163]
 gi|323399150|gb|EGA91555.1| hypothetical protein HMPREF9474_04593 [Clostridium symbiosum
           WAL-14163]
          Length = 685

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%)

Query: 24  HDIISPIGAIHNSLEL--LDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           HD+ SP+ A+ N  ++  L++    G   E MQ I         RL+ ++   G  G++ 
Sbjct: 476 HDMKSPLTALSNMAQIIRLNDIMLDGDTREKMQGIEDKCSVLADRLESIQELAGEAGALP 535

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLS-------RERAKILLNLFMVAHA 128
            +  L     + + + +    V+++      E   L        R+  + L NL   A  
Sbjct: 536 QMEPLSLNRFLADFYRSNQPVVELTGPDFLCELTPLPCTVMADSRKLTRALENLVFNAGE 595

Query: 129 SLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
             P  GK+ +S++  +N  +  +   G     A  P+ F ++     +       +    
Sbjct: 596 FTPPDGKIVLSLKREQNFALICVADTGCGIPEAEIPKVFDRLYTTREDEG--GQGLGLSI 653

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  E+   +  E +          L 
Sbjct: 654 TRAIVLEHGGEISVESVVGGGSTFVIRLP 682


>gi|217979692|ref|YP_002363839.1| PAS/PAC sensor hybrid histidine kinase [Methylocella silvestris
           BL2]
 gi|217505068|gb|ACK52477.1| PAS/PAC sensor hybrid histidine kinase [Methylocella silvestris
           BL2]
          Length = 650

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---LKFMRLAFGYTGSVDSL 80
           HD  + + AI  SLEL+ +    D  +  +  +++ A  R   L    LAF      +  
Sbjct: 290 HDFNNLLMAILGSLELVQKRLPADPKIASLIDNAILAAQRGTSLTQRMLAF--ARRQELE 347

Query: 81  IGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
           +   D+  ++          I     ++V +      +  +  ++   LLNL + A  ++
Sbjct: 348 LEPVDVLALVRGMTDLLQRSIGPSAPIEVRFPLALEPVQADANQLELALLNLVVNARDAM 407

Query: 131 PRGGKVTISVQDSK 144
           P GG + I+ +   
Sbjct: 408 PNGGAIIIAARQEA 421


>gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. JDR-2]
 gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. JDR-2]
          Length = 606

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 93  FIAVDKRVQVSWTGEKIDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
            + V  R +       I     + K +  N+   A  ++P GG++TIS     +     L
Sbjct: 477 LMNVSIRTEFENCIPSIYCDENQLKQVFINIIKNAIEAMPLGGQITISAAMESDHERVRL 536

Query: 152 KINGNLARFPEKFTQIVD 169
            I       P++  + + 
Sbjct: 537 TIRDEGMGIPDEIIRQIG 554


>gi|168704272|ref|ZP_02736549.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 253

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 30/58 (51%)

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +  +IL+NL + A  ++P GG++ I V+DS + +   +K+            +++
Sbjct: 135 VPGQIEQILVNLVLNARQAMPNGGRLKIEVRDSLDADTVEIKVADTGVGIAPDQLRLI 192


>gi|148259726|ref|YP_001233853.1| osmosensitive K+ channel signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
 gi|146401407|gb|ABQ29934.1| osmosensitive K+ channel signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
          Length = 867

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKF------ 66
           ALL S + HD+ +P+ AI  + E L E   E        L+           +F      
Sbjct: 644 ALLSS-LSHDLRTPLTAIRGAAETLAEADGELPEATRRDLLASIVEDVGRMTRFLANITG 702

Query: 67  -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122
             R+  G   +    + L  + +     +       V+   +   +  + A   ++L+NL
Sbjct: 703 MARIETGEIVARHEKVDLAPVVEHAVARVKEAFHTAVNIPEDAATVRADPALLEQVLVNL 762

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              A    P GG +++  + + +  + S+   G      + 
Sbjct: 763 LENAVKYGPEGGAISVFARRAGDSVVLSVADEGVGIPPEDL 803


>gi|108761720|ref|YP_631245.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108465600|gb|ABF90785.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 514

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 117 KILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-----IVD 169
           K+L+NL   A  ++P G  G+V +  +       F ++++ N    PE   +     +  
Sbjct: 405 KVLINLVQNAVEAMPAGRLGRVDVFAEGGNGS-AFIIRVSDNGMGIPEAMQERIFEPLFT 463

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T     +    V     ++   L  E  +    V +  L 
Sbjct: 464 TKPAGTGLGLSV----VASTVRQHGGTLRVESREGEGSVFTLCLP 504


>gi|108805803|ref|YP_645740.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108767046|gb|ABG05928.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 471

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 14/131 (10%)

Query: 97  DKRVQVSWTGEKIDLS----RERAKILLNLFM-VAHASLPRGGKVTISVQDSKNENIFSL 151
             RV V W   +  +     RER +  L   +  A    P GG+V++       +    +
Sbjct: 337 GDRVSVVWEPPEGPVEAVFDRERVRQALAALLDNAVRYTPEGGRVSVRALRRDGKAAVRV 396

Query: 152 KINGNLARFPEKFTQIV-------DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           +  G     PE+   ++       DG     +    +       +A  +   +    +  
Sbjct: 397 EDTGPG--IPEEQLGMIFERFYRVDGTRSRRLGGAGLGLSIARQIAEAHGGAIEVRSVPG 454

Query: 205 HNVVLSALLEK 215
                + LL +
Sbjct: 455 EGSSFTLLLPQ 465


>gi|330006921|ref|ZP_08305792.1| sensor protein CreC [Klebsiella sp. MS 92-3]
 gi|328535637|gb|EGF62087.1| sensor protein CreC [Klebsiella sp. MS 92-3]
          Length = 474

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 29/209 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70
           H++ SP+ AI  + E+L E    +               MQL+    +    RL+  RL 
Sbjct: 265 HELKSPLAAIRGAAEILREEPPPEVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322

Query: 71  FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
                     + +  + Q +    +     K + + W    + ++ +    A+ L NL  
Sbjct: 323 I-----KQQPVSIDALYQRLTEERNIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181
            A    P+GG++ ++ +    E   S+  NG           F +      E    S  +
Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +V  +A  +   +      +  VV +
Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466


>gi|253701720|ref|YP_003022909.1| histidine kinase [Geobacter sp. M21]
 gi|251776570|gb|ACT19151.1| histidine kinase [Geobacter sp. M21]
          Length = 356

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFM----- 67
           ALL S I HD+ +P+ +I  +L  L E G     +    L+  ++  A    +F+     
Sbjct: 132 ALLNS-ISHDLRTPLVSIKGALSALKEQGGRLSPEARRDLLDTANDEAERLNRFVGNLLD 190

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA---KIL 119
             RL  G          L ++       +     D+ V V        +  +     ++L
Sbjct: 191 LSRLEAGALRPRIEPCDLQELIGCAISAMESRLGDRNVSVQLPQGLTLVPLDLVLMIQVL 250

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
           +NL   A+   P GG + ++ + +      S+   G  A   E    F +     V    
Sbjct: 251 VNLLDNANKYAPPGGSIEVAARVNGAWLTLSVADRGPGAPEAELSHIFDKFHRVQVPEKT 310

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R++     +  + +  LL 
Sbjct: 311 GGTGLGLSICKGIVEAHGGRIVARNRPEGGLAVEILLP 348


>gi|119187393|ref|XP_001244303.1| predicted protein [Coccidioides immitis RS]
          Length = 591

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGN--LARFPEKFTQIVDGNVESTIDSHDIQ 182
           A  +  RGG + +      +    S+  +G+   +  P    + + G +   + +  +Q
Sbjct: 26  ADEAAVRGGALVLPEPGEDDTPPRSVHADGDSHHSTDPAHVAEQLHGRLTKHVYARQVQ 84


>gi|332528170|ref|ZP_08404201.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112741|gb|EGJ12534.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 585

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 29/221 (13%)

Query: 18  LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           + S I H++  P+ AI N    +    + G  D     +R  +     + +  R A    
Sbjct: 363 MASNIAHELNQPLAAITNYAEGMTRYIDAGRSDTAF--LRDGARGIAGQAE--RAAVIIR 418

Query: 75  GSVDSLIGLGDIEQVIE------------DFIAVDKRVQVSWTGEKIDLSRERAKI---- 118
                +       + ++               A  + + + W       +    +I    
Sbjct: 419 RIRGFVRRRDARREPLDLDVVVGETLPLFAHAAARRAIPLVWRPHGALPAVNADRIEIEQ 478

Query: 119 -LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            LLNL   A  + P G      + ++    +     +++ +G+    PE   ++ D    
Sbjct: 479 VLLNLLQNALDATPDGVAHERGIVVTTAQGEAGVELTVRDHGSGL-PPEVQARLFDPFFT 537

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +  RL      D    +  +L 
Sbjct: 538 TKPQGLGLGLSICRTIVESHGGRLTASAEADGGATMRVVLP 578


>gi|323137621|ref|ZP_08072698.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397247|gb|EFX99771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 501

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 25/204 (12%)

Query: 22  ICHDIISPIGAIHNS---LELLDEVGIE---------DEVMQLIRLSSMSAIIRLKFMRL 69
           + H++ +P+  I N+   L LL++             +   + +   +      L+  R+
Sbjct: 271 LAHELRNPLAPIKNAVHVLRLLEDDDSATKEKRRAALERAGRQVDHMARLVDDLLEITRI 330

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL---LN 121
           + G      +   L  I     D       A   R+ V  + E + +  +  ++     N
Sbjct: 331 SHGKVELRKARTDLAAILTQAIDLSQPQIQAGSHRLAVDLSTEPLQIDGDPVRLAQVFTN 390

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTI 176
           L   A      GG++ I+      E + +++ NG      +          V+       
Sbjct: 391 LINNAARYTDAGGRIEIAAARDGEEAVVTVRDNGIGIPRQQLSSIFEMFAQVEPTCRRAP 450

Query: 177 DSHDIQFYYVILLAHENKIRLLPE 200
               +       +   +  R+   
Sbjct: 451 GGIGVGLALARSVVQLHGGRIEAR 474


>gi|192290811|ref|YP_001991416.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284560|gb|ACF00941.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 707

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 15/122 (12%)

Query: 48  EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
               +I  +           L F R            + LGD      D +    R  + 
Sbjct: 376 RSFDMIDSAVAKGTALTRQLLSFSR----RHNVAAKAVDLGDAVTKFADVLRQSVRSDIG 431

Query: 104 WTGEKID-------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              +             E    LLNL + A  ++P GG++TIS++    +N    K+ G 
Sbjct: 432 IMIDPPAEPVVVMIDPNEFEIALLNLALNARDAMPDGGRITISIRTETLKNFGPRKLTGT 491

Query: 157 LA 158
            A
Sbjct: 492 YA 493


>gi|153870924|ref|ZP_02000220.1| two-component, sensor histidine kinase [Beggiatoa sp. PS]
 gi|152072615|gb|EDN69785.1| two-component, sensor histidine kinase [Beggiatoa sp. PS]
          Length = 438

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%)

Query: 22  ICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA-------IIRLKFMRLAFG 72
           I HD+ +P+  + N LE +       ++  MQL   S   A          L+  ++  G
Sbjct: 227 IAHDLRTPLTRLRNRLEQMRWQNPNTDEYNMQL-EKSITEADQLLATFNALLRIAKIESG 285

Query: 73  YTGSVDSLIGL----GDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLN 121
              S    + L     D  ++ E       +        Q+   G++  L     + ++N
Sbjct: 286 SHSSRQEPVNLEALVRDASELYEALAEDKNQSLTLKLIPQLQVQGDRDLLF----QAIVN 341

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           L   A    P GGK+ I +   K+     +   G       
Sbjct: 342 LLDNAVKYTPSGGKIGIILFKYKDIIEIIVTDTGPGIPIEA 382


>gi|148243999|ref|YP_001220237.1| osmosensitive K+ channel signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
 gi|146400562|gb|ABQ29095.1| osmosensitive K+ channel signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
          Length = 867

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKF------ 66
           ALL S + HD+ +P+ AI  + E L E   E        L+           +F      
Sbjct: 644 ALLSS-LSHDLRTPLTAIRGAAETLAEADGELPEATRRDLLASIVEDVGRMTRFLANITG 702

Query: 67  -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122
             R+  G   +    + L  + +     +       V+   +   +  + A   ++L+NL
Sbjct: 703 MARIETGEIVARHEKVDLAPVVEHAVARVKEAFHTAVNIPEDAATVRADPALLEQVLVNL 762

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              A    P GG +++  + + +  + S+   G      + 
Sbjct: 763 LENAVKYGPEGGAISVFARRAGDSVVLSVADEGVGIPPEDL 803


>gi|134278765|ref|ZP_01765479.1| sensor histidine kinase [Burkholderia pseudomallei 305]
 gi|237510145|ref|ZP_04522860.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|134250549|gb|EBA50629.1| sensor histidine kinase [Burkholderia pseudomallei 305]
 gi|235002350|gb|EEP51774.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
          Length = 389

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|313680723|ref|YP_004058462.1| histidine kinase [Oceanithermus profundus DSM 14977]
 gi|313153438|gb|ADR37289.1| histidine kinase [Oceanithermus profundus DSM 14977]
          Length = 301

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 20/202 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           + H+  +P+  +   LE+L+     G  ++ + L+R  +       + +RL  G   +  
Sbjct: 105 LAHEFRTPVAGLLALLEVLESGPEPGDREQALALMREEAA------RLLRLVQGQGQART 158

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGG-- 134
               L ++   +E  +       + W+      +      ++LLNL      +L  G   
Sbjct: 159 PPWRLDELRPRLERLLP--GARALRWSTPHPVTAGRDPIFQVLLNLV---ENALRYGKPP 213

Query: 135 -KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHEN 193
            +V   V       +  +     LA +   F     G   + +    +    V  +A   
Sbjct: 214 VEVRTRVHAPGVVAVEVVDAGEPLADYERLFVPGGRGMHAAGVRGSGLGLALVRRIARGW 273

Query: 194 KIRLLPEIIDDHNVVLSALLEK 215
                   +++ N      + +
Sbjct: 274 GGEAYGRRLEEGN-AFGVTVPE 294


>gi|21674198|ref|NP_662263.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 337

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 13/131 (9%)

Query: 42  EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIGL----GDIEQVIEDFIAV 96
           E     + +++I  +++ A   ++ + LAF    +++  ++ L     D EQ++   I  
Sbjct: 8   ETDKRHKRIEVIHHAALRARGLVQQL-LAFSSRQTLEFRMLDLNRVVRDFEQLLRRTIRD 66

Query: 97  DKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTI----SVQDSKNENIF 149
           D  ++      ++ +  +  +I   ++NL + A  ++P GG++T+     V     E  F
Sbjct: 67  DINIRYHLHDGRLVIQGDVGQIKQIIMNLAVNAEDAMPSGGELTVKTSTMVIGKGQEKYF 126

Query: 150 SLKINGNLARF 160
               +G+ A  
Sbjct: 127 EGLPSGDYAVL 137


>gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
 gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 808

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 62/156 (39%), Gaps = 25/156 (16%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI----R 54
           +++   +  M+LV  L   I HD  + +G I  + EL     D     +E +Q I     
Sbjct: 428 QSVLLQIQKMELVGQLAGGIAHDFNNMLGVILGNAELALSSDDLEASVEENLQEIYRAAE 487

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKI 109
            S+      L F R          ++  L  I +V++D +        +++++       
Sbjct: 488 RSAEMISQLLAFAR-------KQTAMPKLVHINEVVQDSLPILQRVAGEKIEIELRPCGD 540

Query: 110 DL-----SRERAKILLNLFMVAHASLPRGGKVTISV 140
           D        +  +IL+NL + A  ++   GK+ I V
Sbjct: 541 DCRLHIDPSQIDQILMNLCLNARDAMNGTGKIVIEV 576


>gi|326403307|ref|YP_004283388.1| two-component sensor histidine kinase [Acidiphilium multivorum
           AIU301]
 gi|325050168|dbj|BAJ80506.1| two-component sensor histidine kinase [Acidiphilium multivorum
           AIU301]
          Length = 867

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKF------ 66
           ALL S + HD+ +P+ AI  + E L E   E        L+           +F      
Sbjct: 644 ALLSS-LSHDLRTPLTAIRGAAETLAEADGELPEATRRDLLASIVEDVGRMTRFLANITG 702

Query: 67  -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122
             R+  G   +    + L  + +     +       V+   +   +  + A   ++L+NL
Sbjct: 703 MARIETGEIVARHEKVDLAPVVEHAVARVKEAFHTAVNIPEDAATVRADPALLEQVLVNL 762

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              A    P GG +++  + + +  + S+   G      + 
Sbjct: 763 LENAVKYGPEGGAISVFARRAGDSVVLSVADEGVGIPPEDL 803


>gi|196233309|ref|ZP_03132154.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196222614|gb|EDY17139.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 900

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 14/153 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70
           L S + HD+ + +  I  S+ LL    E    + V+  I LS+      +K    F R  
Sbjct: 516 LASGVAHDLNNILSPIMMSVPLLRRNLEKETFENVISTIELSATRGAEIVKQVLTFGRGL 575

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125
            G          + +I +++      D R++       W          +   +LNL + 
Sbjct: 576 DGVRRPTSLASIIQEIIKILGQTFPKDIRIETELAPDLWRVVGDSTQLHQV--MLNLCVN 633

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           A  ++P GGK+ I  +++  ++ ++  + G  A
Sbjct: 634 ARDAMPTGGKLRIRGKNAMVDSSYAGMLPGATA 666


>gi|168705337|ref|ZP_02737614.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1013

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 17/177 (9%)

Query: 24  HDIISPIGAIHNS-----LELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGS 76
           HD  + +  I N      LE L   G   D V Q+      +A +  +   LAF      
Sbjct: 656 HDF-NNLLTIINGYGQILLEQLTIGGPARDMVQQMTAAGERAAGLTAQL--LAFSRKAIV 712

Query: 77  VDSLIGLGD----IEQVIEDFIAVD--KRVQVSWTGEKIDLSRERA-KILLNLFMVAHAS 129
              +I L +       ++   I  D      ++    ++     +  ++LLNL + A  +
Sbjct: 713 APKVIDLNEVVTQAASLLRRLIGEDIILTTALANDLSRVTADPTQVEQVLLNLAVNAKDA 772

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           +PRGG++TI  ++ +         +     + +         +   + +   + ++ 
Sbjct: 773 MPRGGRLTIETRNVRLNREMPAWPDCPPGDYVQLAVSDTGVGMTEEVKARLFEPFFT 829


>gi|302039538|ref|YP_003799860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607602|emb|CBK43935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 465

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 28/166 (16%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEV---MQLIRLSSMSA 60
           +  L AL  L + + H++ +P+ AI  +L LL+E      G   +    ++++       
Sbjct: 228 AEKLAALHTLSAGVAHELRNPLSAIDLNLHLLEEEFKEQGGPAKQAAYYLRVLNAECRRL 287

Query: 61  IIRL----KFMRLAFGYTGSVD-SLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLS 112
            + L    KF R      GS+    + L  + + I   +   A ++++Q+     K    
Sbjct: 288 SVILDNFMKFAR-----PGSMGLHAVDLPALIEHIVALMRFEAEERKIQLEQRVSKDMSP 342

Query: 113 -----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
                 + +++L+N+ + A  ++P GG+ +I+ ++   E    ++I
Sbjct: 343 VLGDETQISQVLVNIVVNAFHAMPNGGRCSIATEERTEEGKRWVEI 388


>gi|210613902|ref|ZP_03289966.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787]
 gi|210150927|gb|EEA81935.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787]
          Length = 248

 Score = 37.2 bits (85), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 19/154 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------------LIRLSSM-SAI 61
           L+ S+I H++ +P+  I+++L+L++    E                   L+   S  +  
Sbjct: 12  LVISKISHELRNPLTIIYSTLQLIESRHPEARTFDHWHELMQDVEFMSVLLDDLSRFNHA 71

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L F   +F         I L     V +  +    ++  S      D ++ + ++ LN
Sbjct: 72  GALNFSTFSF---RPFWEYISLSFAASVADTKLEYFSKIDSSINQITGDKTKLQ-EVFLN 127

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           L   A  +    G ++++ + SK+  I  ++ NG
Sbjct: 128 LLRNAADAASPDGTISMTAEQSKDSIIIQVQDNG 161


>gi|116252477|ref|YP_768315.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257125|emb|CAK08220.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 720

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 14/159 (8%)

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
           D  +Q  R  +      L F R            + L ++   + D +       +S   
Sbjct: 366 DGAIQGARRGAALTQRLLAFAR----QQDLQVKPVDLAELVSGMNDLLRRSVGSSISIET 421

Query: 105 ----TGEKIDLSRERAKI-LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
               T     +   + ++ LLNL + A  ++P GG ++IS++  +       +  G  A 
Sbjct: 422 ILPATLPPALVDANQLELALLNLAVNARDAMPDGGTLSISLRKEQVAGN---EALGKGAY 478

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198
                     G    T+      F+    L     + L 
Sbjct: 479 LVLAVADSGTGMDAETLKKAVDPFFSTKELGKGTGLGLS 517


>gi|116621995|ref|YP_824151.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225157|gb|ABJ83866.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 665

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVES 174
           ++L NL + A  ++P GG +TI+     +     +   G      +    +       + 
Sbjct: 564 QVLFNLVVNARDAMPHGGILTIATSSDGSNVQLVISDTGVGM-TEDVRRHLFRPFFRTDE 622

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +       +  +N  ++  +            L 
Sbjct: 623 ECTAAGLGMATTYRIIRQNGGQIEVDSSPGGGARFRIQLP 662


>gi|311108904|ref|YP_003981757.1| heavy metal sensor kinase family protein 3 [Achromobacter
           xylosoxidans A8]
 gi|310763593|gb|ADP19042.1| heavy metal sensor kinase family protein 3 [Achromobacter
           xylosoxidans A8]
          Length = 460

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 71/191 (37%), Gaps = 18/191 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-------SMSAIIRLKFMRLAFG--YT 74
           H++ +P+  + +  E+       ++ ++ +  S         + +  + F+  A G    
Sbjct: 245 HELRTPLATLISGAEVSLSSPRSEQELREVLESNLEELEGLKALVNDMLFLARADGGEPA 304

Query: 75  GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASL 130
           G +  +    ++ +V E + A   D  V ++  G  + ++  R   + + NL   A  + 
Sbjct: 305 GDLQEVNVRQEVARVAEYYEAALDDAGVSLAAHGGAVLMANPRLLRRAIANLLSNAIRAT 364

Query: 131 PRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGN--VESTIDSHDIQFYY 185
           PRG  + +     ++E    ++  G        P  F +   G+       D H +    
Sbjct: 365 PRGRGIDLYCVTRQDEIEIRVRNPGAPIAAQALPRIFDRFYRGDDARSRRADGHGLGLAI 424

Query: 186 VILLAHENKIR 196
           V  +A  +   
Sbjct: 425 VRAIARMHGGN 435


>gi|259416210|ref|ZP_05740130.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259347649|gb|EEW59426.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 924

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SSMSAIIRLKFMRLAFG 72
           L + + HD  + + A+ N    L       + +QL        SS +A +  +F+ L  G
Sbjct: 553 LAAGVAHDF-NNLLAVINGHSALLNDRTPPDKVQLYSNRISEASSRAAKMINRFLDL--G 609

Query: 73  YTGSVDSLIGLG----DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMV 125
            +    S+I L     + + ++   ++ D R  +    +++++     +  ++ LNL   
Sbjct: 610 MSTDQQSMIDLRNLLTESQDLLHSALSADTRFTLDLDEDEMEMLCSPSDLLRVALNLVQN 669

Query: 126 AHASL 130
           A  +L
Sbjct: 670 AQDAL 674


>gi|126457101|ref|YP_001076262.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|167743368|ref|ZP_02416142.1| sensor histidine kinase [Burkholderia pseudomallei 14]
 gi|167828915|ref|ZP_02460386.1| sensor histidine kinase [Burkholderia pseudomallei 9]
 gi|167850384|ref|ZP_02475892.1| sensor histidine kinase [Burkholderia pseudomallei B7210]
 gi|226200063|ref|ZP_03795612.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|242313044|ref|ZP_04812061.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|254185058|ref|ZP_04891647.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|254186296|ref|ZP_04892814.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|254194492|ref|ZP_04900924.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|254265390|ref|ZP_04956255.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
 gi|254301346|ref|ZP_04968790.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|126230869|gb|ABN94282.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|157810934|gb|EDO88104.1| sensor histidine kinase [Burkholderia pseudomallei 406e]
 gi|157933982|gb|EDO89652.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|169651243|gb|EDS83936.1| sensor histidine kinase [Burkholderia pseudomallei S13]
 gi|184215650|gb|EDU12631.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|225927915|gb|EEH23953.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|242136283|gb|EES22686.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|254216392|gb|EET05777.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 389

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 523

 Score = 37.2 bits (85), Expect = 1.8,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 26/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSS----MSAIIRLKFMRL 69
           S I H++ +P+  I    E +     +       E +Q+I   +          L   R+
Sbjct: 298 SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVISEEADRLARQIQDLLDVSRI 357

Query: 70  AFGYTGSVDSLIGLGDIEQ-VIEDFIAV-DKRVQVSWTGEKIDLS-----RERAKILLNL 122
           A G      S + L  +   V+  F A   +R++                    ++L NL
Sbjct: 358 AAGGLRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDDLPPVYADYERMRQVLTNL 417

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVEST 175
              A    P GG + I  +   +  I  +   G     P +   ++       D  +   
Sbjct: 418 IENAVKYSPNGGVIRIGARAEGDMAIVYVSDQGIG--IPPEEQDLIFERFYRVDTRLRRD 475

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +    +   +  R+  E            + 
Sbjct: 476 QPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFFTIP 514


>gi|205375080|ref|ZP_03227871.1| histidine kinase [Bacillus coahuilensis m4-4]
          Length = 343

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 23/173 (13%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIR- 63
            S  L   L + + HD+ +P+ +I + +E     +L +    ++ +  I+  S+      
Sbjct: 115 ESERLKTELIANVSHDLRTPVASIRSHVEALIDQILTDEKTREQYLSTIKQESVKLSELL 174

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIE-QVIEDF--IAVDKRVQVSWTGEK-----IDLS 112
              L+  +L  G          + ++   V+  F  +A  K ++     ++     + + 
Sbjct: 175 EEVLQLSQLERGSVPFHPERTKVDELLVSVLSSFERMAEKKGIEFVVQIDEREDSILIVP 234

Query: 113 RERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPE 162
           ++  ++L NL      ++     G  +TI V+DS    IF +   G    F E
Sbjct: 235 QQIHRVLSNLI---ENAIRYSNNGRTITIIVEDSGRATIFRVTDEGEGIPFEE 284


>gi|196230967|ref|ZP_03129827.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224797|gb|EDY19307.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 737

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 59/134 (44%), Gaps = 12/134 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73
           I HD+ + +  +  ++++L     +  I    + L+  ++  A   +K    F R   G 
Sbjct: 356 IAHDLNNILQPVTMTMDVLRARLPDPSIRSM-LDLVINNAERAASLIKQVLSFARGVEGK 414

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
              +     + DI  ++ +    + + Q+        L  +  ++   LLNL + A  ++
Sbjct: 415 RVPIPPETLVDDIANIVREVFPKNIQFQLRLAEGARPLLGDSTQLHQVLLNLCVNARDAM 474

Query: 131 PRGGKVTISVQDSK 144
           P GG +T+SV+++ 
Sbjct: 475 PGGGTLTLSVENAD 488


>gi|220920746|ref|YP_002496047.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219945352|gb|ACL55744.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 605

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 19/153 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMS-----AIIRLKFMRLA 70
           + H++ +P+ AI    E+L                 +I  SS           L   R+ 
Sbjct: 355 VSHELRTPLNAIIGFSEMLSAEAGLTLPVERQREYAVIIQSSGRHLLEVVNALLDLTRIQ 414

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDL-----SRERAKILLNL 122
            G          +  +     D +   A    V++     +         R   ++L+NL
Sbjct: 415 SGSFDFAPEPFDIRAVVNGCCDLMQLRADQVGVELLRDVPRDLPELTADPRACRQMLINL 474

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              A    PRGG+VT+SV+ + +    S+   G
Sbjct: 475 LSNAVKFTPRGGRVTVSVRQAYDRIELSVTDTG 507


>gi|85857964|ref|YP_460166.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721055|gb|ABC75998.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 593

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 77/219 (35%), Gaps = 16/219 (7%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL---- 64
           S  L A+  L + + H+I +P+ +I     +L E   E+   Q I    +S + RL    
Sbjct: 361 SRRLAAIGSLAAGVAHEIRNPLSSIKGFATVLRERHRENPEDQRIADIMISEVERLNRVI 420

Query: 65  ----KFMR-LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERA 116
               +F R L      S    I    ++ + E        ++  +     DL     +  
Sbjct: 421 GQLLEFSRPLTMNRKDSAIEPILQHTVKMIEEQARKKGIDIRTEFPEGVPDLLIDPDKMT 480

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKFTQIVDGNVEST 175
           ++ LNL + A  ++  GG +++ +   +   I       G   R P++  +I D    + 
Sbjct: 481 QVFLNLSLNAVNAMDTGGTLSLKISRPEARTIRVDVADTGTGIR-PDELGRIFDPYFTTR 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +  ++          V S  L 
Sbjct: 540 PSGTGLGLPIAQRIVEAHGGKIAVASQQGKGTVFSVFLP 578


>gi|237654376|ref|YP_002890690.1| histidine kinase [Thauera sp. MZ1T]
 gi|237625623|gb|ACR02313.1| histidine kinase [Thauera sp. MZ1T]
          Length = 693

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 23/175 (13%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIED--EVMQLIRLSSMS---- 59
           S  L A+  L + + H+I +P   I  +L+LL E      +     ++LI          
Sbjct: 443 SEKLAAIGELTAGVAHEISNPTAVIQGNLDLLREELGPAAQPVANEIRLIHEQVGRIRLI 502

Query: 60  AIIRLKFMR---LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---R 113
               L+F R    A GY   VD    L D   +    +A  +   V        +    +
Sbjct: 503 VTKLLQFARPGEFA-GYVEDVDVNAALADCLVLTRQHLARAEVKVVQRLAATARVQINLQ 561

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEK 163
           E  ++L+NL + A  ++P GG +T+       +        +++  G   R  + 
Sbjct: 562 ELQQVLINLIVNAVQAMPAGGTLTLETVDRDPRQDARGVRITVRDTGGGIRAEDL 616


>gi|218662361|ref|ZP_03518291.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium etli IE4771]
          Length = 403

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 29/183 (15%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + +      A  R + +  +    GS   +
Sbjct: 198 VSHEVGNMIGIITGSLGLLERETGFNDRQKRHLAR-IRKAADRGRSLAGSMLSIGSQQPI 256

Query: 81  IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHA 128
                ++  V+        IA+ ++ ++ +     DL           + +LNL + + A
Sbjct: 257 HPSEVELGSVLRGMADVLEIAIGEKCRLDFEIA-DDLPMTFIDTALFEQSILNLCLNSAA 315

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG + I    S+     S+  +G              G     +D    + Y+   
Sbjct: 316 AMPAGGTIRIRCARSEAGMTVSVTDDGI-------------GMTPEAVD-KAFEPYFTTR 361

Query: 189 LAH 191
            A 
Sbjct: 362 DAQ 364


>gi|315442410|ref|YP_004075289.1| histidine kinase [Mycobacterium sp. Spyr1]
 gi|315260713|gb|ADT97454.1| histidine kinase [Mycobacterium sp. Spyr1]
          Length = 340

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 35/209 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFG 72
           L + + HD+ +P+  I    E + +  + DE +++      +  IRL         ++  
Sbjct: 116 LVAFVSHDLRTPLAGIRAVAEAIADGVVPDEEVRVHAKHIENESIRLSEMVDDLFEMSKI 175

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLS-------RERAKILLN 121
             G++     +  +++V++D IA      +R  V       +         R   ++L N
Sbjct: 176 NAGALTPTFDMVALDEVVDDVIAAHRMPAERAGVRLRASLPEQPVQVVGSDRALVRVLSN 235

Query: 122 LFMVAHASLPRGGKVT------------------ISVQDSKNENIFSLKINGNLARFPEK 163
           L   A A  P GG V                   + + ++    +F +   G+ +R P  
Sbjct: 236 LVANAIAHTPPGGTVELALGADEISAWARVDDTGVGIDEADLPRVFDVAYRGSNSRVPRS 295

Query: 164 FTQIVDGN-VESTIDSHDIQFYYVILLAH 191
            + +  G+ +   I +  +Q +   L AH
Sbjct: 296 DSSLPSGSGLGLAIAAGLVQAHRGTLTAH 324


>gi|150396735|ref|YP_001327202.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
 gi|150028250|gb|ABR60367.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
          Length = 872

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56
           MA+    N         L   I HD  + + AI  S +  LL     +     L  I+ +
Sbjct: 471 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 525

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106
           +  A + ++ + LAF    ++   +      +GD+  +++     + +V+V      W  
Sbjct: 526 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 584

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  E+   LLNL + A  ++P GG +T+  ++        +   G      E F  
Sbjct: 585 RTDLGQFEQV--LLNLAVNARDAMPAGGIITLRTRN---LPAGEVAALGRRELPEEDFVM 639

Query: 167 IVDGNVESTIDS 178
           +   +  + I  
Sbjct: 640 VEVSDEGTGISP 651


>gi|145220642|ref|YP_001131320.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
 gi|145213128|gb|ABP42532.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
          Length = 340

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 35/209 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFG 72
           L + + HD+ +P+  I    E + +  + DE +++      +  IRL         ++  
Sbjct: 116 LVAFVSHDLRTPLAGIRAVAEAIADGVVPDEEVRVHAKHIENESIRLSEMVDDLFEMSKI 175

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLS-------RERAKILLN 121
             G++     +  +++V++D IA      +R  V       +         R   ++L N
Sbjct: 176 NAGALTPTFDMVALDEVVDDVIAAHRMPAERAGVRLRASLPEQPVQVVGSDRALVRVLSN 235

Query: 122 LFMVAHASLPRGGKVT------------------ISVQDSKNENIFSLKINGNLARFPEK 163
           L   A A  P GG V                   + + ++    +F +   G+ +R P  
Sbjct: 236 LVANAIAHTPPGGTVELALGADEISAWARVDDTGVGIDEADLPRVFDVAYRGSNSRVPRS 295

Query: 164 FTQIVDGN-VESTIDSHDIQFYYVILLAH 191
            + +  G+ +   I +  +Q +   L AH
Sbjct: 296 DSSLPSGSGLGLAIAAGLVQAHRGTLTAH 324


>gi|330878942|gb|EGH13091.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 459

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 20/206 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVDSL 80
           I HD+ +PI  +   +ELLD+    D++++ +          L F+R   G         
Sbjct: 255 ISHDLNTPITELRLQMELLDDGPERDDMLESLDELRAMVRETLNFVR---GDAVQEATVE 311

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVAHASLPRGGKV 136
           I L  +   +    A      + W G    + R R     + L NL      +L   G  
Sbjct: 312 ISLTALIDDLAKRYATMGTP-IGWRGASEIMCRCRPLALKRALTNLI---DNALKHAGDA 367

Query: 137 TISV-QDSKNENIFSLKINGNLARFP------EKFTQIV-DGNVESTIDSHDIQFYYVIL 188
           T+S+ +    +    +  +G            E F Q+   G          +       
Sbjct: 368 TVSLFKAPDGDIHLEVLDHGPGIEPAWLTQVFEPFVQLSQTGTDHPQGGGLGLGLAIARA 427

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
               +   L  E      +     L 
Sbjct: 428 CVQAHGGELTLENRPQAGLCAVVRLP 453


>gi|302187056|ref|ZP_07263729.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. syringae 642]
          Length = 697

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 331 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 388

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I V+    V      ID  +     LLNL + 
Sbjct: 389 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 447

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++PRGG++TI   +   +E     +            +    G     I+     F+
Sbjct: 448 ARDAMPRGGRITIETANRWIDERGSQSRELIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 507

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 508 TTKPLGQGTGLGLS 521


>gi|289625965|ref|ZP_06458919.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330869362|gb|EGH04071.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 394

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 77/209 (36%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +RV     +    + ++  R +  +I   L  +   ++ 
Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLVSNAIS 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185
            G  +  + V      ++F L +       PE     +       I         +  Y 
Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDEPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIALAHGGTLEVCSTQEQGTVFTFRMP 390


>gi|206576541|ref|YP_002240551.1| sensor protein CreC [Klebsiella pneumoniae 342]
 gi|206565599|gb|ACI07375.1| sensor protein CreC [Klebsiella pneumoniae 342]
          Length = 474

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 72/209 (34%), Gaps = 29/209 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70
           H++ SP+ AI  + E+L E                    MQL+    +    RL+  RL 
Sbjct: 265 HELKSPLAAIRGAAEILREGPPPAVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322

Query: 71  FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
                     + +  + Q +    D     K + + W    + ++ +    A+ L NL  
Sbjct: 323 I-----KPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181
            A    P+GG++ ++ +    E   S+  NG           F +      E    S  +
Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +V  +A  +   +      +  VV +
Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466


>gi|162148050|ref|YP_001602511.1| histidine kinase, nitrogen regulation protein ntrB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542668|ref|YP_002274897.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786627|emb|CAP56209.1| putative histidine kinase, nitrogen regulation protein ntrB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209530345|gb|ACI50282.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 369

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQ-LIRLSSMSAIIRLKFMRLAFGYTG 75
           + + + H++ +P+  I  + +LL+    E +  +  LIR  +      ++  R+      
Sbjct: 141 MAAILAHEVKNPLSGIRGAAQLLESSVAEGDRELAVLIRDEADRIRDLVE--RMEMFSDK 198

Query: 76  SVDSL-----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAH 127
            ++         L  +  + E   A + R+   +      +   R    ++LLNL   A 
Sbjct: 199 PLERRPVNIHRVLERVRMLAEQGFAGNIRIVEDYDPSLPPVWGNRDQLVQVLLNLVKNAA 258

Query: 128 ASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDI 181
            ++    +GG++T+    +   +   L + G   R         +     +  +I  H  
Sbjct: 259 EAIASDGQGGEITL---GTSYRHGVRLAVPGMEHRVELPLVVSVRDTGPGIPDSIRPHLF 315

Query: 182 QFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           + +     +     + L  +IIDDH  V+ 
Sbjct: 316 EPFLTTKTSGSGLGLALAGKIIDDHGGVIE 345


>gi|186475954|ref|YP_001857424.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phymatum STM815]
 gi|184192413|gb|ACC70378.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phymatum STM815]
          Length = 451

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 61/173 (35%), Gaps = 28/173 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE------VMQ-LIRLSSMSAIIRLKFMRLAFGYT 74
           I HD+ +PI  +    ++LD+             M+ L+R           + R   G  
Sbjct: 251 ISHDLQTPITRMRLRADMLDDEAERGRLQKDLKEMELLVREGVA-------YARTLHGAD 303

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPR 132
                +     IE ++ D+     RV ++        +R +A  +IL NL      +L  
Sbjct: 304 EKPVRVNPDALIESIVNDYADAGNRVTLAGRVGTAVTTRPQALRRILGNLV---DNALKY 360

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
            G   ++V+ S +           L R P        G  +  +D+   Q +Y
Sbjct: 361 SGGDEVNVEVSVDGTAAPHWSIVVLDRGP--------GIPQEQLDA-VFQPFY 404


>gi|53722667|ref|YP_111652.1| two-component sensor kinase [Burkholderia pseudomallei K96243]
 gi|167820552|ref|ZP_02452232.1| probable two-component sensor kinase [Burkholderia pseudomallei 91]
 gi|167915670|ref|ZP_02502761.1| probable two-component sensor kinase [Burkholderia pseudomallei
           112]
 gi|217422063|ref|ZP_03453566.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|52213081|emb|CAH39120.1| probable two-component sensor kinase [Burkholderia pseudomallei
           K96243]
 gi|217394294|gb|EEC34313.1| sensor histidine kinase [Burkholderia pseudomallei 576]
          Length = 389

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|23013521|ref|ZP_00053406.1| COG3852: Signal transduction histidine kinase, nitrogen specific
           [Magnetospirillum magnetotacticum MS-1]
          Length = 373

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 23/223 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59
           ++N   ++S+M   A+L     H++ +P+  I  + +LL++   ED+ +  +LI   +  
Sbjct: 137 SRNAARSVSAM--AAILA----HEVKNPLSGIRGAAQLLEQNAGEDDRVLTRLICDEADR 190

Query: 60  AIIRLKFMRL-AFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRV--QVSWTGEKIDL 111
            +  +   R+ AF    +V+         L  + ++ E   A   R+      +   +  
Sbjct: 191 IVALVD--RMEAFSDNPTVERSAVNIHRVLEHVRRISEAGFARSVRIIENYDPSLPPVLG 248

Query: 112 SRER-AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            R++  ++ LNL   A  ++P  GG++ I     ++    +L  +      P   +   +
Sbjct: 249 DRDQLVQVFLNLVKNAAEAVPEEGGEI-ILSTGYQHGVRLALPGSETRRHLPLVVSIQDN 307

Query: 170 GN-VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           G  +   +  +    +     +     + L+ +II DH  V+ 
Sbjct: 308 GPGIPEDLKPNLFDAFVTTKTSGSGLGLALVAKIIGDHGGVIE 350


>gi|237799890|ref|ZP_04588351.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806382|ref|ZP_04593086.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022745|gb|EGI02802.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027495|gb|EGI07550.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 468

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEPLQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +IE  +        D RV            +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALIECLVEPWLYPEGDGRVTQHGEALAAYSGKPLALKRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+DS    I  +   G     PE+  + V       +     Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDSAQAFILHVDDEGPG--VPEQRLEHVF-EPHFRLAGSQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|213968362|ref|ZP_03396506.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|213927000|gb|EEB60551.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
          Length = 458

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++   +       + ++L+      A+  +K      
Sbjct: 256 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 306

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        D RV      +     +  A  + + NL 
Sbjct: 307 --DTDIHENIEPVDLNALLECLVEPWLTADGDGRVTQQGEAQAAYPGKPLALMRCIGNLI 364

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 365 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 418

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 419 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 455


>gi|167907309|ref|ZP_02494514.1| probable two-component sensor kinase [Burkholderia pseudomallei
           NCTC 13177]
          Length = 389

 Score = 36.8 bits (84), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVD-SLIGLGDIEQVIEDFI 94
           D   +  ++  LI  S   A  R++  R+      F   GS + +   + +  +   + +
Sbjct: 193 DLDYLRGDIGTLIDESIEGAS-RVR--RIVQDLRDFSRAGSEEWNFADVHEGLEATLNVL 249

Query: 95  AVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             + + +     +  +L           ++++NL M A  ++   G +TI  +   +   
Sbjct: 250 RNELKYKAEVVKDYGELPAVECMPSQLNQVVMNLLMNAAQAIVEHGTITIRTRREGDGVT 309

Query: 149 FSLKING 155
            +++  G
Sbjct: 310 IAIEDTG 316


>gi|227818495|ref|YP_002822466.1| osmolarity sensor protein EnvZ [Sinorhizobium fredii NGR234]
 gi|227337494|gb|ACP21713.1| osmolarity sensor protein EnvZ [Sinorhizobium fredii NGR234]
          Length = 440

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 10/201 (4%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    E+ ++   +D+++Q +          + + R A G   +   + 
Sbjct: 243 ISHDLQTPITRMKLRAEMAEDSVDKDKLVQDLGEVERLVKEGVAYARSAHGKEENASRVD 302

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139
               IE +  D+    K V +    +   ++R  A  ++L NL      +L   G   I 
Sbjct: 303 LASFIESLACDYQDTGKAVTIGELSDGAIVTRPHALRRVLTNLI---DNALKFAGGAEIE 359

Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENK 194
           VQ      + ++   G      +    +     ++ +         +     + LA    
Sbjct: 360 VQRHDGTVLITVLDRGPGIPDGQLQAVLQPFFRLEQSRNRDTGGTGLGLAIALQLATAIG 419

Query: 195 IRLLPEIIDDHNVVLSALLEK 215
             L     D   +     L +
Sbjct: 420 ATLTLRNRDGGGLAAEIALRQ 440


>gi|302186957|ref|ZP_07263630.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
          Length = 468

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        + RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +     Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGSQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|220908950|ref|YP_002484261.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865561|gb|ACL45900.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1432

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 18   LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70
            L S + HD+ + +  I  S +LL +    G   E++++I  ++      ++    F R  
Sbjct: 1073 LASGMAHDLNNMLTPILASSQLLQKQFPEGRSQEILKIIEANARRGADLIRQVLTFAR-- 1130

Query: 71   FGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLN 121
                G+    I L       +I+Q+ E        + +        +     +  ++L+N
Sbjct: 1131 ----GTEGKRIPLQVKHLLTEIQQICERTFPKSITIVLDVVSTLSTILADPTQLHQVLMN 1186

Query: 122  LFMVAHASLPRGGKVTISVQD 142
            L + A  ++  GG++ + ++D
Sbjct: 1187 LCVNARDAMSVGGQLQLRLED 1207


>gi|87200631|ref|YP_497888.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87136312|gb|ABD27054.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 436

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I  +++   + ++L   I HD+ +P+  +   LE         + M +        
Sbjct: 218 MQQRIHRSMTD-RMQSMLA--IGHDLRTPLARMQLRLENAGLDAQTRDEMAVDLGEMRHM 274

Query: 61  IIRLKFMRLAF---GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +  L+    AF   G +      + +  + Q + D  A + R       E +++      
Sbjct: 275 LESLQ----AFVESGGSRLPAERVDVAVMAQTLVDTAADEGRDAYFHGLESLEIMARPVS 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +   L  +   +L   G V ++V+   +      + +G      
Sbjct: 331 LRRALSNLLENALHYAGNVHVTVRRDGDMAEIVFEDDGPGIPED 374


>gi|262044957|ref|ZP_06017999.1| sensor histidine kinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037684|gb|EEW38913.1| sensor histidine kinase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 474

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 29/209 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLSSMSAIIRLKFMRLA 70
           H++ SP+ AI  + E+L E    +               MQL+    +    RL+  RL 
Sbjct: 265 HELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLQ-QARLE-SRLE 322

Query: 71  FGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
                     + +  + Q +    +     K + + W    + ++ +    A+ L NL  
Sbjct: 323 I-----KQQPVSIDALYQRLTEERNIALAAKAITLRWRESGMLVNGDGELLAQALGNLLD 377

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDI 181
            A    P+GG++ ++ +    E   S+  NG           F +      E    S  +
Sbjct: 378 NAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGL 437

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +V  +A  +   +      +  VV +
Sbjct: 438 GLAFVREVARLHHGDINLHNRPEGGVVAT 466


>gi|153006422|ref|YP_001380747.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029995|gb|ABS27763.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 516

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 80/210 (38%), Gaps = 26/210 (12%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGS 76
           H+I +P+G I    +L+   +    + E ++LI+ ++M A       L+F R        
Sbjct: 308 HEINNPLGGILAFAQLMSREERTPADLESLKLIQDAAMRAKRIVESLLRFSR------RP 361

Query: 77  VDSLIGLGDIEQVIEDFI------AVDKRVQV--SWTGEKIDLSRERAKILL-NLFMVAH 127
            +   G  D+ QV ED +        D R++V   +       +  + + +  NL + A 
Sbjct: 362 RNEEKGPVDVAQVAEDALFLLRPQMKDGRIEVVRDYRAATALGNANQLQQIFVNLVVNAI 421

Query: 128 ASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            ++   G++T++V   +      S+   G   R PE   +I +    +  +         
Sbjct: 422 QAMAGAGRLTVAVGPAAAGRVRASVADTGPGVR-PEIAKRIFEPFFTTKPEGKGTGLGLS 480

Query: 187 IL--LAHENKIRLLPEIIDDHNVVLSALLE 214
           I   +A ++   +  E   +        L 
Sbjct: 481 ICYQIAEDHGGSIRVEPGPEGGACFVVDLP 510


>gi|94970127|ref|YP_592175.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552177|gb|ABF42101.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 476

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 20/208 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF----MRLAFGYTGSVDS 79
           HD+ SP+ +I   LE+    G   +  + +  +        +F    + LA    G++  
Sbjct: 265 HDMKSPVTSIRGKLEVALLEGSAADWREPVAEAVEGLDRLSQFINTTLDLAEAEAGALPL 324

Query: 80  LIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHAS 129
                D   ++E F+        +   QV     +            ++L NL     A 
Sbjct: 325 RKEPVDFGALVEQFVDIYTPAFHENHHQVHVQIHEPVTVDVDVSLTNRMLSNLLDNEMAH 384

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYV 186
           LP G K+ I V   + +    ++ +G           F + V G        H +   +V
Sbjct: 385 LPPGCKIDIEVMAREQQAELVIRDDGPGFPAELKAHAFERFVKGKESK---GHGLGLAFV 441

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +  E        +  L+ 
Sbjct: 442 DAVVQAHGGNVEIEDTPGGGATIRILMP 469


>gi|254512491|ref|ZP_05124558.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221536202|gb|EEE39190.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 763

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 17/132 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           HD  + + AI    +LL     +++     +  I  ++  A   +  + LAF  +     
Sbjct: 402 HDFNNLLTAISGHCDLLLLRHDQNDPNYGDLVQINQNANRAAALVSQL-LAF--SRKQTL 458

Query: 80  LIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHAS 129
              + D+   I D I      V ++V+++ + + +        R+  ++L+NL + A  +
Sbjct: 459 RPEVLDLRDTISDLIHLLNRLVGEKVRLTLSHDPVLKPVCADKRQLEQVLMNLVVNARDA 518

Query: 130 LPRGGKVTISVQ 141
           +P GG++ I  +
Sbjct: 519 MPEGGEIRIETE 530


>gi|94494936|ref|ZP_01301517.1| sensory box histidine kinase/response regulator [Sphingomonas sp.
           SKA58]
 gi|94425202|gb|EAT10222.1| sensory box histidine kinase/response regulator [Sphingomonas sp.
           SKA58]
          Length = 996

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 35/226 (15%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  +  SL+LL      G +D + + I  +  SA     L    LAF    S
Sbjct: 629 IAHDFNNMLTGVIGSLDLLQRHLAAGRQDRIDRYIDTAMTSAQRAASLTQRLLAFSRRQS 688

Query: 77  VD-SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID----LSRERAK-ILLNLFMVAHA 128
           +D + + +GD+   +ED +    D+ +++     +          + +  LLNL + A  
Sbjct: 689 LDVTAVNVGDLVTGMEDMLRRTMDENIRLEVHLPEATWLAKTDHNQLESALLNLAINARD 748

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----DGNVESTIDSHDIQFY 184
           ++P GG +TI+ +++ +     L  +   A   + F +I        +   + +     +
Sbjct: 749 AMPHGGTLTIAARNTPSNEATGLDADDMQA---DDFVEISVSDTGTGMSEDVLAKAFDPF 805

Query: 185 YVIL---------------LAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                   A ++  ++      +    +  LL +
Sbjct: 806 FTTKPIGAGTGLGLSMVYGFARQSGGQVHITSAPEEGTTIRLLLPR 851


>gi|289673820|ref|ZP_06494710.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 440

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 77  IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 136

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 137 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 194

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P GG + +   + + +  F+
Sbjct: 195 RDAMPDGGTLVVETSNQQLDRSFT 218


>gi|148263858|ref|YP_001230564.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146397358|gb|ABQ25991.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 528

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 81/201 (40%), Gaps = 19/201 (9%)

Query: 17  LLCSRICHDIISPIGAIH--NSL--ELLDEVGIEDEVMQLIRLSS----MSAIIRLKFMR 68
           LL + + H+I +P+ AI     +  + L +  I+ + ++ I   S          L + R
Sbjct: 273 LLAAGMAHEIGTPLSAIIGYAGILRDELQDDAIKADYLRRIEAESGRIDRIVRGLLDYAR 332

Query: 69  LA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILLN 121
                      +G +   + L   + V++        + +     ++ +   +  ++L+N
Sbjct: 333 PTDVHCELMDISGLLTETVDLLGAQGVLKQITTS---LILDDNLPRVFVDPHQLQQVLIN 389

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
           L + A  ++ +GG++ ++ +  K E +F    +  ++    +          S ++S D+
Sbjct: 390 LIINARDAIKQGGELEVAARAGKAEMLFVQSTSAPVSVMGRRKDDFHGAFSYSYLNSRDV 449

Query: 182 QFYYVILLAHENKIRLLPEII 202
              ++ +   +N   +  E +
Sbjct: 450 -ACWLAIAVRDNGEGIAAENL 469


>gi|23014493|ref|ZP_00054306.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 495

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 15/202 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    E +++     +++  +          L F R            +
Sbjct: 296 ISHDLKTPITRLRLRAEFMEDDDQRAKMLCDLEEMEAMIASTLAFARD--DAAREPSIRL 353

Query: 82  GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
            L   I+ ++ED   +  R         +  +R  A  + L NL      ++  GG   +
Sbjct: 354 DLAAMIQGMVEDMEELGGRCSYDGPQSLVLDARPVALKRALANLM---DNAVKYGGSAAL 410

Query: 139 SVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
           S+     +   +++  G         R    F ++       T     +           
Sbjct: 411 SLTSLGQDARITIEDQGPGIPEEARERVFAPFVRLETSRSRET-GGTGLGLAVARAAIRA 469

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +   +         + ++  L 
Sbjct: 470 HGGDITLGDRPGGGLRVTVTLP 491


>gi|144899690|emb|CAM76554.1| osmolarity sensor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 441

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 48/142 (33%), Gaps = 9/142 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           + HD+ +P+  +   L +L EV    E+ + +          L F+R   G  G   +  
Sbjct: 246 VSHDLRTPLTRMKLQLAMLGEVDGRAELEEDVAEMEQMVEGYLAFVR---GEGGEATTPT 302

Query: 82  GLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI 138
            L  +   +      + R   + V  +       +  A+++ NL      +   GG V +
Sbjct: 303 DLAALVDEVVSRYRREGRELDLHVEDSLVMPLKPQAMARVISNLI---GNAHRYGGHVWV 359

Query: 139 SVQDSKNENIFSLKINGNLARF 160
            V          +  +G     
Sbjct: 360 RVGKRAEAAEIIVDDDGPGIPV 381


>gi|148557324|ref|YP_001264906.1| GAF sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148502514|gb|ABQ70768.1| GAF sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 571

 Score = 36.8 bits (84), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 17/151 (11%)

Query: 24  HDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA-IIRLKFMRL-AFGY-TGSVDS 79
           HD  + +  I  SL+L L  + +++ V++ ++++  +A   RL   RL AF        S
Sbjct: 219 HDFNNLLTPIVGSLDLILSGMPLDERVLRTVKVAMDAADRARLLVDRLLAFARRQPLAPS 278

Query: 80  LIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAK--------ILLNLFMVAHAS 129
            + L  + + + D +  ++  R+ ++   E         +         LLNL + A  +
Sbjct: 279 PVDLRGLIESMRDLLVTSLGVRIALAIDVEADL---PAVRGDRHQLEMALLNLTVNARDA 335

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +P GG ++IS + +    + S    G+  R 
Sbjct: 336 MPDGGILSISARRAPAAGLPSNLAKGDYVRI 366


>gi|170748607|ref|YP_001754867.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655129|gb|ACB24184.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 628

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 76/219 (34%), Gaps = 30/219 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + AI  SLEL      +   +Q +  ++  A  R        L F R     
Sbjct: 273 IAHDFNNLLTAILGSLELAGPKVADQPRVQRLIENARGAAERGASLTKRLLSFSR----A 328

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKI-LLNLFMVA 126
                  + +  +   + D            R  +      + +  ++ ++ +LNL + A
Sbjct: 329 HDLQARPVDVNTLITGMSDLFGRSLGGLVTVRTDLEDGLPAVQVDPDQLELAVLNLCINA 388

Query: 127 HASLPRGGKVTISVQ--------DSKNENIFSLKINGNLARFPEKFTQIVDG---NVEST 175
             ++P GG +T++ +        +  +     + +       PE+  + V       ++ 
Sbjct: 389 RDAMPDGGAITVATRRLAISGDPEIADGPYLGISVTDEGTGIPEEILRRVCEPFFTTKAV 448

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  LA ++K RL+ + +      +   L 
Sbjct: 449 GQGTGLGLAMVFGLAQQSKGRLVIDSVVGRGTRVELALP 487


>gi|220925979|ref|YP_002501281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219950586|gb|ACL60978.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 673

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 14/141 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGYTGSVDS 79
           I HD  + +  I  +LE+L+    E   ++L++ +  +A    +L    LAFG       
Sbjct: 305 IAHDFNNLLTVILGNLEMLEAQIREPRQLELVKEARETAEHGAQLTERLLAFG--RRQPL 362

Query: 80  LIGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKI--------LLNLFMVAHAS 129
              L D+ Q+  D   + +R   +      ++D    + ++        +LNL + A  +
Sbjct: 363 RPRLTDVGQLFADLTPILRRTLGETIQVKARLDADLWKVRVDASQLQNAILNLAINARDA 422

Query: 130 LPRGGKVTISVQDSKNENIFS 150
           +P GG++T++ +++  +  ++
Sbjct: 423 MPNGGRLTLAAENTHIDAEYA 443


>gi|330873058|gb|EGH07207.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 468

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++   +       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        D RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLTADRDGRVTQLGEAQAAYPGKPLALMRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 584

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL-IRLSSMSAIIRLKFMRLA 70
           S + H++ +P+ ++   +E L E  +ED          M++ I   +      L+  R+ 
Sbjct: 367 SNVSHELRTPLASLKALVETLQEGALEDPPAAQRFLRQMEIEIDNLTQMVRELLELSRIE 426

Query: 71  FGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG------EKIDLSRERA-KILLNL 122
            G        +   +I  +  E      +R  ++          ++    ER  ++L+NL
Sbjct: 427 SGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVLVNL 486

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSH 179
              A    P GG++T+ V+       F ++  G      +    F +    +   + +  
Sbjct: 487 THNAVKFTPPGGEITLGVKQEGQAICFWVRDTGVGIPPEDLERIFERFYKTDRSRSGEGT 546

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +   +  R+  E            L 
Sbjct: 547 GLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLP 581


>gi|119386150|ref|YP_917205.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119376745|gb|ABL71509.1| histidine kinase [Paracoccus denitrificans PD1222]
          Length = 419

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           HD+ +P+  +    E +++           E + +I  S+      ++ +R   G  G  
Sbjct: 219 HDLRTPMTRMRLRAEFIEDDAERAKWLSDLEELDMIADSA------IRLVREEVGLDGGE 272

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
              +    + Q+  +  A+D++V++         +   A       ++A+A+   GG   
Sbjct: 273 PIRLDRL-LRQIALELHALDQKVELGALPPLTVHAGPIALKRALRNLIANAAT-HGGGAR 330

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +++    ++ +  ++ +G     PE   QI + 
Sbjct: 331 VALAREGDDAVIRIEDDGPGV-PPELLAQIFEP 362


>gi|291521397|emb|CBK79690.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 343

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 77/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNIC-FNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58
           M +N    +    +L  L+ S I H + +P+  +  + + LL++   E E    IR    
Sbjct: 110 MQENRRRVDEERQELQTLV-SDISHQVKTPVSNLKMATDTLLEKPMTEAERTDFIR-GIR 167

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGD-IEQVIED--FIAVDKRVQVSWTGE 107
           +   +L F+        RL  G        + L D + Q +    + A  K++ VS    
Sbjct: 168 TQTDKLDFLFQALVKTSRLETGVIQLNKKPVCLFDTVAQAMSGIVYAAEKKKIAVSVDCP 227

Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
           +       S+  ++ L NL   A    P GGK+T+SV   +      +   G        
Sbjct: 228 ENLTFSHDSKWTSEALFNLLDNAVKYTPAGGKITVSVIPWEMYVEIKVADTGKGISESNQ 287

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +              I  Y    +       +            S +L 
Sbjct: 288 AAIFRRFYREEEVHEQQGVGIGLYLTREIVTRQGGYIKVVSEPGKGSEFSIMLP 341


>gi|289647966|ref|ZP_06479309.1| sensor histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 394

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 77/209 (36%), Gaps = 19/209 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++ +Q+++    S   A       L F R   G+ G 
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKALQVVQHILTSGKRASQLVDDVLDFARGRMGH-GI 241

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSR-ERAKILLNLFMVAHASLP 131
             S+     +++ +E  ++  +RV     +    + ++  R +  +I   L  +   ++ 
Sbjct: 242 PLSMHDAHGLDETLEHVVSEIRRVHPSRLIKSDIKMLERIRCDHERIAQLLSNLVSNAIS 301

Query: 132 RGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYY 185
            G  +  + V      ++F L +       PE     +       I         +  Y 
Sbjct: 302 HGDPQSPVEVTAGVRGDLFLLSVTNQGEPIPESVRSQLFLPYSRPITDEPQAGLGLGLYI 361

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +A  +   L      +   V +  + 
Sbjct: 362 ASEIALAHGGTLEVCSTQEQGTVFTFRMP 390


>gi|197103421|ref|YP_002128799.1| histidine kinas/response regulator(phosphate acceptor regulatory
           protein) [Phenylobacterium zucineum HLK1]
 gi|196480697|gb|ACG80224.1| histidine kinas/response regulator(phosphate acceptor regulatory
           protein) [Phenylobacterium zucineum HLK1]
          Length = 639

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 27/180 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVG-IEDEVMQLIR---LSSMSAIIRLKFMRLAFGYTGSVD- 78
           HD  + +  I   L++L     +     +L+     S+  A   ++ + LAF        
Sbjct: 285 HDFNNLLMPILGGLDILQRSSRLSPRERKLLDGAIQSAERAKALVQRL-LAF--ARRQPL 341

Query: 79  --SLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKI------LLNLFMVAHAS 129
               + +    Q + + I      Q+S + +    L             +LNL + A  +
Sbjct: 342 QAGPVDVAAAIQAMGELIGSTTGPQISVSIDTPPILPPAHVDANQLEMAILNLAVNARDA 401

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----SHDIQFYY 185
           +P GG + +S      +              P  +  I   +    +D    +  ++ ++
Sbjct: 402 MPTGGTLRLSATAEWVDAGHR------AGLAPGHYVCISVSDTGEGMDEATRARAVEPFF 455


>gi|172058457|ref|YP_001814917.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171990978|gb|ACB61900.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 421

 Score = 36.8 bits (84), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 14/152 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM--------RLAFGY 73
           I HD+ +P+  I N  E L    I  + +  +  S +    RL  +        +LA G 
Sbjct: 219 ITHDLRTPLAIIRNETEALAAGVIPVDELPDVTSSIIEETDRLGLLIDETLVYSKLAGGM 278

Query: 74  TGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNLFMVAH 127
                + + L        E++   F     R+ V     ++ L R    ++L+N  + A 
Sbjct: 279 MPLDRTEVALDQLVEETAERLQSTFQKDGLRLTVETVPVRLSLDRRMFERVLVNFLVNAQ 338

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + P G +V + +  ++     +       AR
Sbjct: 339 VAAPVGSEVLVRLTATELTVEDAGNGVAENAR 370


>gi|149925133|ref|ZP_01913440.1| PAS/PAC sensor hybrid histidine kinase [Plesiocystis pacifica
           SIR-1]
 gi|149813996|gb|EDM73634.1| PAS/PAC sensor hybrid histidine kinase [Plesiocystis pacifica
           SIR-1]
          Length = 584

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 14/152 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF-MR-- 68
           A L   + HD  + +  I +  ELL+    E    DEV+     + ++A  +  F  R  
Sbjct: 225 AALAGGLAHDFNNTLMVIMSWAELLEVELGEASQGDEVLSEATSAVVTAAEQASFLARQL 284

Query: 69  LAFGYTG-SVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDLSRERA--KILLN 121
           L+ G  G S    + +  +  +        +  +  V++        L+      +I+LN
Sbjct: 285 LSLGRQGTSTPEPVDVRGVMGLAVTSLRKLLPANIEVRLEAEAVDAVLAEPAQLQQIILN 344

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
           L + A  ++P GG+++  V+  +++N  +  I
Sbjct: 345 LAINARDAMPEGGRLSFGVRQERDDNGATWVI 376


>gi|115374243|ref|ZP_01461529.1| sensor protein ZraS, putative [Stigmatella aurantiaca DW4/3-1]
 gi|115368786|gb|EAU67735.1| sensor protein ZraS, putative [Stigmatella aurantiaca DW4/3-1]
          Length = 432

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 74/204 (36%), Gaps = 12/204 (5%)

Query: 22  ICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTGSV 77
           I H++ +P+G+I   L  L   D  G   E MQ++R         L +F+  +       
Sbjct: 206 IAHELKNPLGSIK-GLAALVSKDVEGKSAERMQVLRQEINRMQDILDEFLNFSRPLGPLT 264

Query: 78  DSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASL 130
              + L ++ +   ++ + +A ++R+ +         +    R+  ++L+NL   A  + 
Sbjct: 265 QEQVSLRELCENVLMLHEGVAAERRLTLRLHPGPEIAACCDARKVKQVLINLLQNALDAS 324

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           P G +V I V    +  +    ++       E   ++    V +      +       LA
Sbjct: 325 PPGQEVCIEVAPLGSTQVRVSVLDRGPGLTGESVERLFQAGVTTKPQGSGLGLPIARSLA 384

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
            ++   L     +         L 
Sbjct: 385 RQHGGDLSLHPREGGGCHAMMALP 408


>gi|330982192|gb|EGH80295.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 380

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 17  IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 76

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 77  LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 134

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P GG + +   + + +  F+
Sbjct: 135 RDAMPDGGTLVVETSNQQLDRSFT 158


>gi|310818046|ref|YP_003950404.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391118|gb|ADO68577.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 457

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 74/204 (36%), Gaps = 12/204 (5%)

Query: 22  ICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTGSV 77
           I H++ +P+G+I   L  L   D  G   E MQ++R         L +F+  +       
Sbjct: 231 IAHELKNPLGSIK-GLAALVSKDVEGKSAERMQVLRQEINRMQDILDEFLNFSRPLGPLT 289

Query: 78  DSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASL 130
              + L ++ +   ++ + +A ++R+ +         +    R+  ++L+NL   A  + 
Sbjct: 290 QEQVSLRELCENVLMLHEGVAAERRLTLRLHPGPEIAACCDARKVKQVLINLLQNALDAS 349

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           P G +V I V    +  +    ++       E   ++    V +      +       LA
Sbjct: 350 PPGQEVCIEVAPLGSTQVRVSVLDRGPGLTGESVERLFQAGVTTKPQGSGLGLPIARSLA 409

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
            ++   L     +         L 
Sbjct: 410 RQHGGDLSLHPREGGGCHAMMALP 433


>gi|320108037|ref|YP_004183627.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319926558|gb|ADV83633.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 363

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 67/194 (34%), Gaps = 27/194 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-------SMSAIIRLKFMRLA 70
           L + I H+I +P+ A+ + L L+     E +  + I  +       +  A   L+F +  
Sbjct: 144 LAASIAHEIRNPVDAVMSLLYLIRSESSETKRSEYIEQAEGELSRVAEIATNTLRFYQDP 203

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDL---SRERAK-ILLNLF 123
            G T        L D+   + +         RV+V     +       +   + ++ NL 
Sbjct: 204 AGLT-----TFDLADLADTVLNLFRGRISTSRVKVQAELPRGVFVSAPQGELRQVVANLV 258

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
             A  ++P GG++ + ++   N             R          G     + +   + 
Sbjct: 259 GNALDAMPTGGRLILRIRKFVNSRTGK-----QCVRL--TVADTGIGMSPE-VLARVFEA 310

Query: 184 YYVILLAHENKIRL 197
           +Y    A  N + L
Sbjct: 311 FYTTKGAAGNGLGL 324


>gi|124515361|gb|EAY56871.1| Multi-sensor signal transduction histidine kinase [Leptospirillum
           rubarum]
 gi|206601662|gb|EDZ38145.1| Multi-sensor signal transduction histidine kinase [Leptospirillum
           sp. Group II '5-way CG']
          Length = 660

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-----ILLNLFMVAHASLPRGGKVT 137
           L ++  +++  + +  R++ S  GEK   S E A+     + LNL M    ++P+GGK++
Sbjct: 513 LMEVRSLLQQTL-LKARIRFSLEGEKGLPSVEGARGPLHQVFLNLMMNGIEAMPKGGKLS 571

Query: 138 ISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHEN 193
           + +     +  N  ++ I  +    PE   + +     +   +  I     I   +   +
Sbjct: 572 VRLSAMPLQERNGIAVTIEDSGKGIPETLIKKLHDPFFTHGKARGIGLGLTITRDIVDRH 631

Query: 194 KIRLLPEIIDDHNVVLSALLE 214
             RL  E I    V     + 
Sbjct: 632 AGRLTIENIQTGGVRAVVWIP 652


>gi|15965555|ref|NP_385908.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307302675|ref|ZP_07582431.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti
           BL225C]
 gi|15074736|emb|CAC46381.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306903039|gb|EFN33630.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti
           BL225C]
          Length = 869

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 25/192 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56
           MA+    N         L   I HD  + + AI  S +  LL     +     L  I+ +
Sbjct: 471 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 525

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106
           +  A + ++ + LAF    ++   +      +GD+  +++     + +V+V      W  
Sbjct: 526 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 584

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +      E+   LLNL + A  ++P GG +T+  ++        +   G      E F  
Sbjct: 585 KTDLGQFEQV--LLNLAVNARDAMPAGGIITLRTRN---LPASEVAALGRRELPEEDFVM 639

Query: 167 IVDGNVESTIDS 178
           +   +  + I  
Sbjct: 640 VEVSDQGTGIPP 651


>gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus pseudofirmus OF4]
          Length = 593

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 75/217 (34%), Gaps = 35/217 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----------- 65
           + H++ +P+ +I    E L +  + D       + +I   S      ++           
Sbjct: 370 VSHELKTPVTSIKGFSETLLDGAMADPAYMEKFLTIIHKESERLQSLIQDLLELSKLEQH 429

Query: 66  FMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           + RL +G          +V+ L    + +++     A    V++    E++       ++
Sbjct: 430 YFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASS-VEMDGDSERLK------QV 482

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVEST 175
            +NL   A    P  G++ +SV       +F++  NG     +  P  F +    +   +
Sbjct: 483 AINLISNAITYTPNHGEINVSVTQDHQSILFTVSDNGIGIESSELPRIFERFYRVDRARS 542

Query: 176 IDSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLS 210
            +S        I   L   +  +L  E    H    +
Sbjct: 543 RNSGGTGLGLAIVKHLVEAHNGKLSVESELGHGTTFT 579


>gi|323699934|ref|ZP_08111846.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459866|gb|EGB15731.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 745

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 78/215 (36%), Gaps = 27/215 (12%)

Query: 24  HDIISPI-GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYT 74
           HD+ SP+ G I     LL+   + ++   L+RL   S   R        L   ++  G  
Sbjct: 534 HDLKSPLNGIIGIPQLLLEGGNLTEQQEMLVRL-VESTGYRILRMVDHSLDLFKMETGVY 592

Query: 75  GSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKI-DLSRERAK--------ILLNL 122
             V + + +  +   V+ D   +A  + V +  + E+  D    R +        +L NL
Sbjct: 593 EYVPAEVDVAKVMRTVLNDHAGLARARGVTLDMSTERAEDGPECRIRSDKDLLYHMLSNL 652

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDI 181
              A  + P GG V++ ++         ++I    A       +  +            +
Sbjct: 653 IANAVDASPDGGTVSVRLEG---VPCRVIRIRNRGAVPAAIRGRFFEKYKTWGKKHGTGL 709

Query: 182 QFYYVILLAHENKIRLLPEIIDDHN-VVLSALLEK 215
             Y   L+A      L  +  D+ +   +S LL +
Sbjct: 710 GTYSSKLMADVMGYGLHLDTSDEADKTTISILLPE 744


>gi|329849810|ref|ZP_08264656.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328841721|gb|EGF91291.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 501

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 27/200 (13%)

Query: 22  ICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----YT 74
           I HD+ SP+  + + LE  L+D      +  + +  +       L+  +  F        
Sbjct: 282 IAHDLRSPLSRLRSKLEVSLIDVDKDPSQAREALAKALDETDQLLRTFQTVFAISRLQAA 341

Query: 75  GSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEK---IDLSRER-AKILLNLFM 124
           G     + + D   + +D       +A DK ++  +  E+      +R+  A+ L NL  
Sbjct: 342 GGAPDQV-IFDATALADDMAELYELVAADKGLEFEFEIERDVKALGNRDFLAQALANLLD 400

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDS 178
            A    P GG      + S+ E  FS+   G      +  R  E+F ++       T+  
Sbjct: 401 NAVKYTPEGGITLRLRRTSQREVEFSITDTGPGVPEKDRGRIAERFVRL---ENSRTLPG 457

Query: 179 HDIQFYYVILLAHENKIRLL 198
             +    V  +A  +K RL 
Sbjct: 458 VGLGLSMVEAVAVAHKGRLD 477


>gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 18  LCSRICHDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSS---MSAIIRLK-FMR 68
           L + I HD+ +P+ AI       + +++ +     E  Q I          +  L+    
Sbjct: 264 LLANIAHDLATPLTAIQGFSEALADDMIQDPAARQETAQRIGREVQRLRRMVADLQQMTS 323

Query: 69  LAFGYTGSVDSLIGLGDI----EQVIEDFIAVDKRV---QVSWTGEKIDLSRERA-KILL 120
           L  G T    + + L ++      VIE        V   +       +    +R  ++LL
Sbjct: 324 LESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRDDVPLVQADSDRVTQVLL 383

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           NL   A    P GG +T+     ++     + I        
Sbjct: 384 NLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGID 424


>gi|289678812|ref|ZP_06499702.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. syringae FF5]
          Length = 539

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 319 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 376

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I V+    V      ID  +     LLNL + 
Sbjct: 377 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 435

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++PRGG++TI   +   +E     +            +    G     I+     F+
Sbjct: 436 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 495

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 496 TTKPLGQGTGLGLS 509


>gi|163741068|ref|ZP_02148460.1| sensory box sensor histidine kianse/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161385421|gb|EDQ09798.1| sensory box sensor histidine kianse/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 741

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78
           HD  + + AI    +LL    D+   +   +  I  ++  A   +  + LAF        
Sbjct: 377 HDFNNLLTAISGHCDLLLLRHDQGDQDFGDLIQIHENANRAAALVSQL-LAFSRKQTLQP 435

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
            ++ + D    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++P
Sbjct: 436 EVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMP 495

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQ-----FYY 185
           +GG++ I         +    +  N A  P   +  +   +    I    +Q     FY 
Sbjct: 496 QGGEIRI----ETEAVVLDQPLERNRAVVPAGDWVTVKVSDEGVGISPDKLQKVFEPFYT 551

Query: 186 VILLAHENKIRLLP 199
                    + L  
Sbjct: 552 TKRTGEGTGLGLST 565


>gi|197123429|ref|YP_002135380.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196173278|gb|ACG74251.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 512

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 17/155 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAI----IRLKFMRLAFGYTGSVD 78
           H++ +P+GAI  +L+++D  G  +   + ++R  S          L   R+  G     +
Sbjct: 161 HELRNPLGAIILALDVIDRRGAAEPRQLDVVRRQSRQLSRLVDDLLDVSRVTSGKIALHN 220

Query: 79  SLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
             + L        +  Q       +  R +V     ++ L+ +  ++   +  +   ++ 
Sbjct: 221 HRVELAGLVSRAVEAMQPSAAAAGISLRAEV--APGEVPLAGDPVRLEQVVANLVGNAVK 278

Query: 132 R---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               GG V ++++ S +E +  +  +G     P+ 
Sbjct: 279 YNRPGGHVVVALETSGDEAVLRVHDDGIGLAEPDL 313


>gi|126737807|ref|ZP_01753537.1| sensory box sensor histidine kianse/response regulator [Roseobacter
           sp. SK209-2-6]
 gi|126721200|gb|EBA17904.1| sensory box sensor histidine kianse/response regulator [Roseobacter
           sp. SK209-2-6]
          Length = 769

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 15/131 (11%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77
           HD  + + AI    +LL    + G +D    LI+   ++  A   +  + LAF      +
Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAAALVSQL-LAFSRKQTLL 464

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130
             ++ + D    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++
Sbjct: 465 PEVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 524

Query: 131 PRGGKVTISVQ 141
           P GG++ +  +
Sbjct: 525 PNGGEIRVRTE 535


>gi|89068276|ref|ZP_01155686.1| sensory box sensor histidine kianse/response regulator [Oceanicola
           granulosus HTCC2516]
 gi|89046193|gb|EAR52251.1| sensory box sensor histidine kianse/response regulator [Oceanicola
           granulosus HTCC2516]
          Length = 758

 Score = 36.8 bits (84), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 52/134 (38%), Gaps = 19/134 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 393 HDFNNLLTAISGHCDLLLLRHDQGDPDFGDLTQIHQNANRAAALVGQLLAFSR----KQN 448

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + L D    +   +     +++ ++   +    +     R+  ++L+NL + A  
Sbjct: 449 MRPERLDLRDTLADLTHLLNRLVGEKIALTLAHDPALKAIRADKRQIEQVLMNLVVNARD 508

Query: 129 SLPRGGKVTISVQD 142
           ++P GG++ I  ++
Sbjct: 509 AMPEGGEIRIETEN 522


>gi|294677286|ref|YP_003577901.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294476106|gb|ADE85494.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 767

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 399 HDFNNLLTAISGHCDLLMLRHDKGDPDYTDLDQISQNANRAASLVGQLLAFSR----KQT 454

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
               +I L D    +   +     ++V ++ T +          R+  ++++NL + A  
Sbjct: 455 LKPRIIDLRDTLSDLTHLLNRLTGEKVVLTLTHDPNLAPIRADKRQLEQVIMNLVVNARD 514

Query: 129 SLPRGGKVTISVQD 142
           ++P GG++ I  ++
Sbjct: 515 AMPGGGEIRIETEN 528


>gi|85703672|ref|ZP_01034776.1| ATP-binding region, ATPase-like:Histidine kinase,
           HAMPregion:Histidine kinase A, N-terminal [Roseovarius
           sp. 217]
 gi|85672600|gb|EAQ27457.1| ATP-binding region, ATPase-like:Histidine kinase,
           HAMPregion:Histidine kinase A, N-terminal [Roseovarius
           sp. 217]
          Length = 654

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 60/173 (34%), Gaps = 27/173 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAII----RLKFMR 68
           + + + H+I +P   I  +L+++ +            + LI              L+F R
Sbjct: 435 ITAGVAHEINNPAAVIQGNLDVIRQTLGAGSLPVITELDLIDRQVGRISAIVGKLLQFAR 494

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDL---SRERAK 117
                 G   +     +I  V+ D +             V +    +   +     E  +
Sbjct: 495 -----PGEFGTFEEDVEIASVLRDCLVLVDHVVAKAGVTVVIDAQPDTPLVRINPGELQQ 549

Query: 118 ILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +++NL   A  ++  GG++ ++   +  +     +L +  +    PE    +V
Sbjct: 550 VIINLVTNAAQAMKTGGRLAVTTHAESREGHPGAALIVADSGPGIPEDKLALV 602


>gi|91974766|ref|YP_567425.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91681222|gb|ABE37524.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 1105

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 11/129 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSL 80
           I HD  + +  I  +++++ +   +   +  I      A  R  +  RL   +       
Sbjct: 712 IAHDFNNMLTVITGTIDIISDGVADQPHLATIAKLISEAADRGAELTRLLLAFARKQPLR 771

Query: 81  IGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLS--RERAKI---LLNLFMVAHASL 130
               D+  ++          + +++++  + +        +R ++   L+NL + A  ++
Sbjct: 772 PDETDVNALVAGLQSLLRPTLGEQIEIETSFDDGAWPIYVDRGQLESALVNLAVNARDAM 831

Query: 131 PRGGKVTIS 139
           P GGK+TI 
Sbjct: 832 PNGGKLTIE 840


>gi|323528025|ref|YP_004230177.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia sp. CCGE1001]
 gi|323385027|gb|ADX57117.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia sp. CCGE1001]
          Length = 374

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 17/216 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67
            +L + + HD+ +P+GA+  S E L     + +    +     ++ +R        L   
Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADQQS-ATVAARVKNSSLRMARMVDQLLNLA 206

Query: 68  RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125
           RL  G        I L  +   VI++F + +   ++ +T            ++      +
Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKRIVFTSRGHTAGAWDTDLVWQAVSNL 266

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSH 179
              +L  G    +SV               N    P +    +      +     + +  
Sbjct: 267 VSNALHHGAAGDVSVHVDGEAEDCVRLTVANRGVIPPEVVPHLFKAFGPNNGGSRSREGL 326

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  + V  +A  +  R+  +  +    V +  L +
Sbjct: 327 GLGLHIVHEIARMHGGRVDVKSDESDGTVFTIELPR 362


>gi|330900711|gb|EGH32130.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 637

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 273 IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 332

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 333 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 390

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P GG + +   + + +  F+
Sbjct: 391 RDAMPDGGTLVVETSNQRLDRSFT 414


>gi|307318523|ref|ZP_07597957.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83]
 gi|306895863|gb|EFN26615.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83]
          Length = 869

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 25/192 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56
           MA+    N         L   I HD  + + AI  S +  LL     +     L  I+ +
Sbjct: 471 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 525

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106
           +  A + ++ + LAF    ++   +      +GD+  +++     + +V+V      W  
Sbjct: 526 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 584

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +      E+   LLNL + A  ++P GG +T+  ++        +   G      E F  
Sbjct: 585 KTDLGQFEQV--LLNLAVNARDAMPAGGIITLRTRN---LPASEVAALGRRELPEEDFVM 639

Query: 167 IVDGNVESTIDS 178
           +   +  + I  
Sbjct: 640 VEVSDQGTGIPP 651


>gi|289207236|ref|YP_003459302.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thioalkalivibrio sp. K90mix]
 gi|288942867|gb|ADC70566.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thioalkalivibrio sp. K90mix]
          Length = 365

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 72/167 (43%), Gaps = 28/167 (16%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFM--RLAFGYTG 75
           + H+I +P+G +  + +LL    D+ G+++    +IR        RL+ +  R+  G   
Sbjct: 146 LAHEIKNPLGGLRGAAQLLASELDDDGLKEYTGIIIRE-----ADRLRSLVDRM-LGPNN 199

Query: 76  SVD-SLIGLGDIEQVIEDFIAV----DKRVQVSWTGEKIDLSRER---AKILLNLFMVAH 127
                 + L ++ + +   ++V      +++  +     D+  +R    + +LNL   A 
Sbjct: 200 LPRLEAVNLHEVLEHVRGLVSVQLPLGLKIRGDYDPSIPDVQADRDMLVQAILNLVQNAV 259

Query: 128 ASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +L  GG++T+        ++   ++  +  L +  N    PE+  +
Sbjct: 260 QALSEGGEITLVSRVLRQYTISGHRHRLVARLSVRDNGPGIPEEIRE 306


>gi|104782054|ref|YP_608552.1| sensory box histidine kinase/response regulator [Pseudomonas
           entomophila L48]
 gi|95111041|emb|CAK15761.1| putative sensory box histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 680

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 28/198 (14%)

Query: 22  ICHDIISPIGAIHNSLEL----LDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFG--- 72
           I HD  + +G I  + EL    L++  ++D    +     S+  A   +  + LAF    
Sbjct: 316 IAHDFNNLLGGILGAQELVRQRLEQARLDDIPALLDTAGDSARRAAALVHRL-LAFSRRQ 374

Query: 73  ----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLF 123
                  SV +LI   DIE++I   +     V V      W+   ID  +  +  LLNL 
Sbjct: 375 TLLPQATSVGALI--LDIEELIRRSVGPAIAVHVGCAPGLWS-TFIDPPQLES-ALLNLC 430

Query: 124 MVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           + A  +LP GG++ I  ++               G   +          G     ++   
Sbjct: 431 INARDALPDGGRIEIRCENLSLDTERATALDLAAGEYLQL--SVEDNGRGMPAEVVERAI 488

Query: 181 IQFYYVILLAHENKIRLL 198
             F+    L     + L 
Sbjct: 489 DPFFTTKPLGQGTGLGLS 506


>gi|299138772|ref|ZP_07031950.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298599408|gb|EFI55568.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 592

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           ++        + +   L + + H+I +P+ A+ N L L+ +    +E  Q ++L+S    
Sbjct: 353 SQAALLATEKLAVAGRLAATLAHEIHNPLDAVGNLLYLMKDGATPEESTQFLQLASQELD 412

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEKIDL 111
              +  R   G      + + + D+++++E            + ++ R + +        
Sbjct: 413 RVTQISRAMLGMYRESKTPV-IVDVKEMLESVLLLLNRQMSQLQLEVRTEFASNASVTGY 471

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             E  ++ +NL   A  +  +GG + +   ++ +        +  G      +    I D
Sbjct: 472 PVELRQVFINLLSNAADASTQGGIIAVRTKLRSAVRSGKTGGRQAGVEITISDNGVGISD 531

Query: 170 GNVESTIDSHDIQFYYV 186
             +         Q ++ 
Sbjct: 532 AAL-----PQVFQPFFT 543


>gi|229837581|ref|ZP_04457743.1| putative histidine kinase sensor [Yersinia pestis Pestoides A]
 gi|229704269|gb|EEO91280.1| putative histidine kinase sensor [Yersinia pestis Pestoides A]
          Length = 474

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 23/153 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ SP+ AI  + ELL E    +   + LI         R++ +         ++S + 
Sbjct: 267 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 324

Query: 83  LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           L                  + + V        K V  +       L    ++ L NL   
Sbjct: 325 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALNNLIDN 381

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           A    P GG++++S +   +  + +++ +G+  
Sbjct: 382 ALDFTPAGGEISVSGERQDDTYLITVEDSGSGI 414


>gi|209546371|ref|YP_002278261.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539228|gb|ACI59161.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 642

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 63/172 (36%), Gaps = 17/172 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           I HD  + + A+  SLE+L +   +D  +  L+  +   A     L    LAF  +   +
Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDRSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346

Query: 79  SLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128
             +   D+  ++   + +  R                  I     + ++ +LNL + A  
Sbjct: 347 LHMEPIDVSGLVRGMMDMLSRSLGPLTRIETSFPIRLPTILTDPNQLEMAILNLVVNARD 406

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178
           ++P GG++ +   +    +   L   G   R    ++   +    +E  I  
Sbjct: 407 AMPSGGRILLRAAEESVPSGKGLLPPGRYIRIAVIDEGEGMDAKTMEQAITP 458


>gi|66045686|ref|YP_235527.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256393|gb|AAY37489.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 676

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+           L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGRTEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|305667236|ref|YP_003863523.1| two-component system sensor histidine kinase [Maribacter sp.
           HTCC2170]
 gi|88708170|gb|EAR00408.1| two-component system sensor histidine kinase [Maribacter sp.
           HTCC2170]
          Length = 526

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 79/215 (36%), Gaps = 25/215 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLK-FMRLAFGYTGS 76
           H+  +PI  I+ ++E +    + ++       +Q+IR  +     +++  +R++      
Sbjct: 311 HEFKTPIATINLAVEAIKNPQVIEDKERVMRYLQMIRDENKRMHAQVENVLRISKLEKNQ 370

Query: 77  VDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
           +D      D+  +I+D IA            ++      + D+          L  +   
Sbjct: 371 LDISKDRVDVHDIIQDAIAHVELIVADRGGYIETHLEAGRRDVLANEMHFTNVLVNILDN 430

Query: 129 SL---PRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSH 179
           ++   P   K+ I  Q+ KN  +  ++  G         +  EKF +   G++   +  H
Sbjct: 431 AIKYSPEAPKIDIYTQEVKNNVVIEVRDQGAGMSKAVLKKVFEKFYREHTGDI-HNVKGH 489

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   YV  +  +++  +  E   D        L 
Sbjct: 490 GLGLAYVKRIIEDHQGEVYAESEKDKGSTFYIKLP 524


>gi|152973318|ref|YP_001338464.1| sensory histidine kinase CreC [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150958167|gb|ABR80197.1| catabolite repression sensor kinase for PhoB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 474

 Score = 36.8 bits (84), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 74/203 (36%), Gaps = 17/203 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H++ SP+ AI  + E+L E G   EV      + ++   R++ +         ++S + +
Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPEVAARFTDNILAQNTRMQLLVERLLQQARLESRLEI 323

Query: 84  GDIEQVIEDFIAV----------DKRVQVSWTGEKIDLSRE---RAKILLNLFMVAHASL 130
                +I+                K + + W    + ++ +    A+ L NL   A    
Sbjct: 324 KQQPVLIDALYQRLTEERNIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFT 383

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           P+GG++ ++ +    E   S+  NG           F +      E    S  +   +V 
Sbjct: 384 PQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGLGLAFVR 443

Query: 188 LLAHENKIRLLPEIIDDHNVVLS 210
            +A  +   +      +  VV +
Sbjct: 444 EVARLHHGDINLHNRPEGGVVAT 466


>gi|330950928|gb|EGH51188.1| sensor histidine kinase [Pseudomonas syringae Cit 7]
          Length = 468

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 80/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        + RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGDRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|283788575|ref|YP_003368440.1| two-component system sensor kinase [Citrobacter rodentium ICC168]
 gi|282952029|emb|CBG91758.1| two-component system sensor kinase [Citrobacter rodentium ICC168]
          Length = 474

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 74/212 (34%), Gaps = 25/212 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF--------MRL------ 69
           H++ SP+ AI  + E+L E G   ++++    + +S   R++          RL      
Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPDIVKRFTDNILSQNARMQMLVETLLRQARLENRQEI 323

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVA 126
           A            + D   +        K++ +  T   + ++ E A   + L NL   A
Sbjct: 324 ALSPVAVDALFARVSDARAIQLA----TKKIALKMTPTTLTVAAEPALLEQALGNLLDNA 379

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQF 183
               P GG +T+S Q        ++   G        P  F +      E+   S  +  
Sbjct: 380 IDFTPEGGTITLSAQAHGERVALTVSDTGTGIPDFALPRLFERFYSLPRENGQKSSGLGL 439

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +A   K R+         V  +  L +
Sbjct: 440 AFVSEVARLLKGRIELRNRPQGGVEATLTLHR 471


>gi|224368970|ref|YP_002603134.1| sensory box histidine kinase [Desulfobacterium autotrophicum HRM2]
 gi|223691687|gb|ACN14970.1| sensory box histidine kinase [Desulfobacterium autotrophicum HRM2]
          Length = 476

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 70/213 (32%), Gaps = 19/213 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGS 76
           I HD+ SP+  I    EL      +    + +  S++  + RL       + ++    G 
Sbjct: 258 IAHDLKSPLTRIRGLAELTLVGNKDSGAFESMAASTIEEVDRLLSMINTMLVISRAEAGQ 317

Query: 77  VDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVA 126
            +      D+  ++       D +A DK + +  T     ++R       + L NL   A
Sbjct: 318 GEFRFEPVDLSGLVHEACDLFDAVAEDKDILLKCTVPAPVVARVDRGMIQRALTNLIDNA 377

Query: 127 HASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182
               P GG+V + V D         +   G      +    F +    +   +     + 
Sbjct: 378 LKYTPCGGRVWVEVVDAGGGRVEIQVHDTGKGIAVSDIERIFDRFFRVDPSRSESGAGLG 437

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +A  +   L  E +     V S  L K
Sbjct: 438 LCLARAIARGHGGDLCVESVLGKGSVFSLRLPK 470


>gi|221235903|ref|YP_002518340.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|220965076|gb|ACL96432.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 815

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%)

Query: 86  IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           +++ + D      R+       +ID  +  A  LLNL + A  + P GG+V+I  +    
Sbjct: 536 LKRALGDAYTFHLRLGAGVRSARIDAGQFEA-ALLNLVVNARDATPPGGEVSIESRPVTL 594

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL---------------LA 190
           +        G   R      +     +++   +  ++ ++                   A
Sbjct: 595 DRKEGDLEPGQYLRVA---VRDTGTGMDAATIARAVEPFFTTKPPGEGTGLGLSQVYGFA 651

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
            ++   +L E        ++ LL 
Sbjct: 652 RQSGGSVLIESTPGQGATVALLLP 675


>gi|170747699|ref|YP_001753959.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654221|gb|ACB23276.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 416

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 21/208 (10%)

Query: 18  LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVM----QLIRLSSMSAIIRLKFMRL 69
           L + I H+I  P+ +I       L LLD   ++ +++    Q I      A   +   R 
Sbjct: 196 LSASIAHEIGQPLSSIGMTAGAMLRLLDRADLDRDLLRRQCQRIVDQVTRAGDIIDRTRR 255

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSW---------TGEKIDLSRERAK 117
                 SV + + + +I      F+A D    +++++          + ++I L +    
Sbjct: 256 MAAKRDSVRAPVSVAEILTEAAQFVAHDLNRGKIRLTVVPADAAAQVSADRIQLQQVFVN 315

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           +L+N   +   +   G ++T+            +  NG     P+   ++ DG   +  +
Sbjct: 316 LLMNAIQIHRQARTPGPEITVETTCRDGSITVDVVDNGPGL-DPDAVDRLFDGFFTTRPE 374

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
              +       +   +   +     D  
Sbjct: 375 GLGLGLRICRTIVAAHGGSIDARSRDGA 402


>gi|159900425|ref|YP_001546672.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893464|gb|ABX06544.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 850

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 64/155 (41%), Gaps = 17/155 (10%)

Query: 18  LCSRICHDIISPIGAI-HNSLELLDEVGIED--EVMQLIRLSSM-SAIIRLKFMRLAFGY 73
           L S + HD  + +  I  N   L+ E+   +  E +++I  ++   A    +  R A   
Sbjct: 489 LASGVTHDFNNLLAGILGNVQVLMGELQNPEQRETLRVIERAAKDGAETVKRIQRFARKD 548

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAK--------ILL 120
            G +D+ + L ++ +   D   V  R       V+   ++  L+    +        +L 
Sbjct: 549 DGEIDAPVELHELAEDALDLTRVRWRNAAQEQGVNIELQREILNVPTIRGHAAELREVLT 608

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           NL + A  ++P GG + ++     +E   S+  +G
Sbjct: 609 NLIINAVDAMPNGGMLRVATGQRGSEVFVSVADSG 643


>gi|330971293|gb|EGH71359.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 676

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+           L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGRTEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|163736397|ref|ZP_02143816.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161390267|gb|EDQ14617.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 771

 Score = 36.8 bits (84), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 23/194 (11%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78
           HD  + + AI    +LL    D+   +   +  I  ++  A   +  + LAF        
Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDQDFGDLIQIHENANRAAALVSQL-LAFSRKQTLQP 465

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
            ++ + D    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++P
Sbjct: 466 EVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMP 525

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQ-----FYY 185
           +GG++ I         +    +  N A  P   +  +   +    I    +Q     FY 
Sbjct: 526 QGGEIRI----ETEAVVLDQPLERNRAVVPAGDWVTVKVSDEGVGISPDKLQKVFEPFYT 581

Query: 186 VILLAHENKIRLLP 199
                    + L  
Sbjct: 582 TKRTGEGTGLGLST 595


>gi|328953066|ref|YP_004370400.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453390|gb|AEB09219.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 609

 Score = 36.4 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 15/137 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFG 72
           S I HDI +P+  +  ++E L +  +  E    +Q I  SS + ++ L       R   G
Sbjct: 368 SMIVHDIKAPLTGVRLTIETLQDESLPPEISHKLQGIIESSEALLLHLHNVLDISRYESG 427

Query: 73  YTGSVDSLIGLGD-IEQVIEDF--IAVDKRVQVSWTGEKIDLS-----RERAKILLNLFM 124
                   + L   I+++I  +  +A ++ + +               R   ++L NL  
Sbjct: 428 QLKLQPEEVYLDFTIQRLINQYSNMANNQGITLQALIPPTLPPVWADERYLERVLFNLIA 487

Query: 125 VAHASLPRGGKVTISVQ 141
            A  +   GG++ I+ +
Sbjct: 488 NALEATSPGGRIEIAAR 504


>gi|91786450|ref|YP_547402.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
 gi|91695675|gb|ABE42504.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
          Length = 487

 Score = 36.4 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 18/159 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLE-LLDEVGIEDE---------VMQLIRLSSMSAIIRLKFM 67
           L + I HD+ +P+ ++H  LE LL +    D           +   R  +  A    +  
Sbjct: 272 LFANISHDLRTPLTSLHGYLETLLIKADALDPGERRRYLEIALAQSRKVARLAQELFELA 331

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------KIL 119
           RL +G          L D+ Q +     +    +       I               ++L
Sbjct: 332 RLEYGVVKPDKETFALADLVQDVFQKFELAAEARHQRLVPDIAPGLPVVTADLGMIERVL 391

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            NL   A    P GG++ + ++  +      +   G   
Sbjct: 392 TNLLDNAIRHTPEGGEIVVQLRQDRESVCVEVSDTGPGI 430


>gi|83951870|ref|ZP_00960602.1| sensory box sensor histidine kianse/response regulator [Roseovarius
           nubinhibens ISM]
 gi|83836876|gb|EAP76173.1| sensory box sensor histidine kianse/response regulator [Roseovarius
           nubinhibens ISM]
          Length = 754

 Score = 36.4 bits (83), Expect = 2.3,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 66/155 (42%), Gaps = 14/155 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG- 72
           L S + HD  + + AI    +LL    D+   +   +Q I  ++  A + +  + LA+  
Sbjct: 376 LASGVAHDFNNLLTAITGHCDLLLLRHDQHDSDFSDLQQINQNANRAAVLVNQL-LAYSR 434

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMV 125
                  ++ L D    +   +     +R+ +S + +    S     R+  ++L+NL + 
Sbjct: 435 KQTLTPEIMDLRDTLADLTHLLNRLVGERIDLSLSHDPELWSIRADRRQFEQVLMNLVVN 494

Query: 126 AHASLPRGGKVTISVQD-SKNENIFSLKINGNLAR 159
           A  ++P GG+V I  ++   +  +   +   +  R
Sbjct: 495 ARDAMPDGGEVRIRTENLVLDSPMIRDRATVSPGR 529


>gi|323691919|ref|ZP_08106171.1| hypothetical protein HMPREF9475_01034 [Clostridium symbiosum
           WAL-14673]
 gi|323504035|gb|EGB19845.1| hypothetical protein HMPREF9475_01034 [Clostridium symbiosum
           WAL-14673]
          Length = 679

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 24  HDIISPIGAIHNSLEL--LDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           HD+ SP+ A+ N  ++  L++    G   E MQ I         RL+ ++   G  G++ 
Sbjct: 470 HDMKSPLTALSNMAQIIRLNDIMLDGDTREKMQGIEDKCSVLADRLESIQELAGEAGALP 529

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------------SRERAKILLNLFMVA 126
            +  L  + + + DF   + +  V  TG                 SR+  + L NL   A
Sbjct: 530 QMEPLS-LNRFLADFYRSN-QPVVELTGPDFLCELTPLPCTVRADSRKLTRALENLIYNA 587

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQF 183
               P  GK+ +S++  +N  +  +   G        P+ F ++     +       +  
Sbjct: 588 GEFTPPDGKIVLSLKREQNFALICVADTGCGIPETEIPKVFDRLYTTREDEG--GQGLGL 645

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  E+   +  E +          L 
Sbjct: 646 SITRAIVLEHGGEISVESVVGGGSTFVIRLP 676


>gi|167841263|ref|ZP_02467947.1| Periplasmic sensor signal transduction Histidine Kinase
           [Burkholderia thailandensis MSMB43]
          Length = 429

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 70/214 (32%), Gaps = 26/214 (12%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRL 69
             +L   I HDI +P       L  L       E     R S+   +  +     +F+  
Sbjct: 226 AEMLAG-ISHDIRTP-------LTKLRMAIAAPEAFDAPRESAERFVAEIDAIVDQFIDF 277

Query: 70  AFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNLFMVA 126
           A    G       L   IEQ++ D+  +  R  +          R     ++L+NL    
Sbjct: 278 ARSGDGETVLPGDLNALIEQLVADYTGLGYRFDMRLAPLPAMRFRPVGMQRLLMNLMH-- 335

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG------NVESTIDSHD 180
           +A++   G+V +SV  S       +++       PE    ++          +       
Sbjct: 336 NAAIH--GRVGLSVHTSVEGGRVVIRVEDAGPGVPEDALPLLTQPFRRVERPDRPSGGTG 393

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +A ++  RL   + +   +  +  L 
Sbjct: 394 LGLAIAERIARQHGGRLDLSLRNSGGLKATVRLP 427


>gi|78222180|ref|YP_383927.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193435|gb|ABB31202.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 531

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 16/150 (10%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIH--NSLELLDEVGIEDEVMQLIRLSSMSAI--- 61
           L S  L +  LL +   H+I +P+ +I     L L+DEV  +      +R     A    
Sbjct: 262 LRSEKLASVGLLAAGTAHEIGTPLTSIMGYAGL-LMDEVADDPRKADYLRRIERDAERID 320

Query: 62  ----IRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SR 113
                 L F R A G T +VD +       ++ ++   F  +   V  +     I +   
Sbjct: 321 RIVRDLLNFARPAEGTTETVDVVALVASTLEMLELQGAFKGIAVTVDAAGELPPIVVDPF 380

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS 143
           +  ++L+NLF+ A  ++  GGK+ +     
Sbjct: 381 QLQQVLINLFINARDAMSDGGKLDVRTSAD 410


>gi|27380599|ref|NP_772128.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353764|dbj|BAC50753.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 907

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 75/226 (33%), Gaps = 43/226 (19%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  I  ++E++ E   +      I      A  R        L F R       
Sbjct: 546 HDFNNVLTVITGTIEIIQEGLADRPQFAAIAQLIDDAAARGAEITSQLLTFAR----RQP 601

Query: 76  SVDSLIGLGDI--------EQVIEDFIAVDKRVQVS-WTGEKIDLSRERAKILLNLFMVA 126
                I +  +        + ++ + I +  R+    W+        + +  ++NL + A
Sbjct: 602 LEPREIDVNALVVETAKLLKPILGEHIEIVTRLADDAWSAMAD--PSQLSSAIVNLAVNA 659

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQFY 184
             ++P GG++T+   + + +    ++ +G++ R       + D    + + I     + +
Sbjct: 660 RDAMPDGGRLTLETANRELD---GVRSDGDIMRGAFVMIAVTDTGHGIPADIRERVFEPF 716

Query: 185 YVIL---------------LAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                   A +    +  E  +    V+   L +
Sbjct: 717 FTTKGVGRGTGLGLSMVYGFARQTGGTVAIESEEGQGTVMRLFLPR 762


>gi|16127106|ref|NP_421670.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|13424490|gb|AAK24838.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
          Length = 794

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%)

Query: 86  IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           +++ + D      R+       +ID  +  A  LLNL + A  + P GG+V+I  +    
Sbjct: 515 LKRALGDAYTFHLRLGAGVRSARIDAGQFEA-ALLNLVVNARDATPPGGEVSIESRPVTL 573

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL---------------LA 190
           +        G   R      +     +++   +  ++ ++                   A
Sbjct: 574 DRKEGDLEPGQYLRVA---VRDTGTGMDAATIARAVEPFFTTKPPGEGTGLGLSQVYGFA 630

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
            ++   +L E        ++ LL 
Sbjct: 631 RQSGGSVLIESTPGQGATVALLLP 654


>gi|284037982|ref|YP_003387912.1| signal transduction histidine kinase with CheB and CheR activity
            [Spirosoma linguale DSM 74]
 gi|283817275|gb|ADB39113.1| signal transduction histidine kinase with CheB and CheR activity
            [Spirosoma linguale DSM 74]
          Length = 1418

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 15/159 (9%)

Query: 24   HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLAFGYTGS 76
            HD+    G I  +  LL+ +  ++E  Q++ + + +           L + RL  G    
Sbjct: 1199 HDLRGSFGVIQGAAALLNLMDTKEEREQMLSMLNRNLGQVTSLLTQLLDYSRLEAGQEQV 1258

Query: 77   VDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKIDLSRERAK---ILLNLFMVAHAS 129
                     + + +   +    + +  W      + + ++ +  K   I  NL + A   
Sbjct: 1259 FSQSFDASHLFRELSTSMEPLAKDRGLWLKVHGPDTLPVTGDMVKVQRIAQNLILNALKY 1318

Query: 130  LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               GG VTIS +  +    +   ++      PE+  + +
Sbjct: 1319 TREGG-VTISWELGEGNTGWQFSVSDTGPGLPEEAARQL 1356


>gi|168700127|ref|ZP_02732404.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Gemmata
           obscuriglobus UQM 2246]
          Length = 393

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 73/209 (34%), Gaps = 25/209 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------- 65
           + +ALL     H++ +P+  I N+LE+L       + ++  R      + +LK       
Sbjct: 169 EFLALLA----HELRNPLTPILNALEILRLANDSGDTVRRQRERMERQVAQLKRLVEDLL 224

Query: 66  -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKIL 119
              R+  G        + + ++     D              ++   E++ L+ +R ++ 
Sbjct: 225 DVSRITTGKLRLAPERLTIQELIDSAVDMSRSQLEAAKLELVLNVPAEQVVLTGDRVRLT 284

Query: 120 LNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKING---NLARFPEKFT--QIVDGN 171
             L  V + +      GG+V +SV         +++  G     +  P+ F     VD  
Sbjct: 285 QVLCNVLNNAAKFTEPGGRVFVSVAPHPGRVTVTIRDTGVGIAESVLPQLFGLFTQVDRT 344

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPE 200
           +  +     I    V  L   +   +   
Sbjct: 345 LSRSQSGLGIGLALVRRLVEMHGGTVTAH 373


>gi|148655014|ref|YP_001275219.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148567124|gb|ABQ89269.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 893

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 65/162 (40%), Gaps = 12/162 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAF-GY 73
           L S + HD  + + AI  +L+L L  +   D   Q IR + ++        R  LA+ G 
Sbjct: 496 LASGVAHDFNNLLTAILGNLDLALLTLSRNDPAAQPIRNAMLATRYAAGLTRQLLAYAGK 555

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRER-----AKILLNLFMVA 126
                + + L +I Q +   + V   K+ ++           +       +I+LNL + A
Sbjct: 556 GNYQVTDVNLTEIVQGMAAMLRVSVGKQARLELRLAPDLPVFQADPSHIQQIVLNLILNA 615

Query: 127 HASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             SLP G G +T+       +  F  +   N    P ++  +
Sbjct: 616 AESLPSGEGTITVRTDVRDCDEAFLKRNRINNQAPPGRYLLL 657


>gi|330940801|gb|EGH43783.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 671

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 305 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 362

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I V+    V      ID  +     LLNL + 
Sbjct: 363 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 421

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++PRGG++TI   +   +E     +            +    G     I+     F+
Sbjct: 422 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 481

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 482 TTKPLGQGTGLGLS 495


>gi|134300143|ref|YP_001113639.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134052843|gb|ABO50814.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 460

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 69/182 (37%), Gaps = 21/182 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRL 55
           M K I   L  ++LV  + + I H+I +P+  +   L+L           +++ M +I  
Sbjct: 226 MEKEIK-KLDRLNLVGQVAAGIGHEIRNPLTTVRGFLQLFQTKKESCDIYKEQFMLMIEE 284

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVSWTG 106
              +  I  +F+ LA     +    + + ++  +          +          V    
Sbjct: 285 LDRANSIITEFLTLA----RNKPERVEMKNLNSIVTKILPLLQAQALKEEKYVYAVLDKV 340

Query: 107 EKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             + L     + I+LNL      ++ RGG +TI     +   I S++  G   + PE   
Sbjct: 341 PDLLLDENEIRQIILNLIRNGLDAMSRGGNITIRTYIQEPHTILSIRDEGEGIK-PEVLE 399

Query: 166 QI 167
           +I
Sbjct: 400 KI 401


>gi|126439646|ref|YP_001057796.1| sensor histidine kinase [Burkholderia pseudomallei 668]
 gi|126219139|gb|ABN82645.1| sensor histidine kinase [Burkholderia pseudomallei 668]
          Length = 627

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 62/191 (32%), Gaps = 22/191 (11%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91
           +D   +  +++ LI  S   A+ R++        F R     +G   +   L    +   
Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442

Query: 92  DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     E   L        + +++ +NL + A  S+   G +TI      +
Sbjct: 443 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203
               S+   G      +   +I D    +    H       I   +   +  R+  E   
Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGHGTGLGLSISHGIVEHHGGRIDVESHV 561

Query: 204 DHNVVLSALLE 214
                L+  L 
Sbjct: 562 GRGSTLTVTLP 572


>gi|328954099|ref|YP_004371433.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454423|gb|AEB10252.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 623

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 85/242 (35%), Gaps = 35/242 (14%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDE---VM 50
           + +     + S  L +L  L S + H+I +P+ ++   LE ++         E++    M
Sbjct: 373 LKETQQAAVRSQQLASLGQLASGVAHEIRTPLTSLKLFLESIENEITISPEYEEDFQVAM 432

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKI 109
             IR    +    L F R         + +    ++  ++ED  + +  R ++  T  + 
Sbjct: 433 NQIRRMEATINRFLDFAR-------PREPVYSWLEVGDLLEDALLIIGPRARLQETTIRK 485

Query: 110 DLS----------RERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKI 153
            LS          ++  + LLNL + A  ++P+ G++T++           +     + I
Sbjct: 486 SLSPSLPKIKGDRKQLGEALLNLMVNALEAMPQRGRLTVAAHPGELPGTDGSRPCVVIDI 545

Query: 154 NGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +        E   ++ +    +      +    V      +   ++   +       S  
Sbjct: 546 SDTSPGIQGENIGRLFEPFFTTKATGAGLGLSIVSSTVQRHGGEVMVRSVVGRGTTFSVF 605

Query: 213 LE 214
           + 
Sbjct: 606 IP 607


>gi|303246261|ref|ZP_07332541.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
 gi|302492324|gb|EFL52196.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfovibrio fructosovorans JJ]
          Length = 396

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 16/129 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRL----KFMRLAFGYTGS 76
           H++ +P+  IH  +ELL E G++    E    +R S+   +  L    +  RL  G    
Sbjct: 166 HELRTPLNGIHGMIELLAESGLDAQQREFADYLRGSANRLLALLTSLMELSRLDAGGMVL 225

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEKI-DLSR-------ERAKILLNLFMVAH 127
             +   L +  + +    +     + +S+  +   D+ R          + L+NL   A 
Sbjct: 226 APAPYDLSETLEALTAAFSRKAAAKGLSFRADMATDMPRLVVGDRAALVQALVNLLENAV 285

Query: 128 ASLPRGGKV 136
              PRGG V
Sbjct: 286 KFTPRGGVV 294


>gi|225569380|ref|ZP_03778405.1| hypothetical protein CLOHYLEM_05464 [Clostridium hylemonae DSM
           15053]
 gi|225161588|gb|EEG74207.1| hypothetical protein CLOHYLEM_05464 [Clostridium hylemonae DSM
           15053]
          Length = 352

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 67/214 (31%), Gaps = 20/214 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM--------RLAFGY 73
           I H + +P+ A+    EL+++  I D             I +LK++        R+  G 
Sbjct: 133 ISHQLKTPVAALSMCFELMEDARITDAERAEFAARGAGEIKKLKYLTETLTNLSRMEAGM 192

Query: 74  TGSVDSLIGLGD--IEQVIEDFIAVDKR-VQVSWTGEKIDL----SRERAKILLNLFMVA 126
                    L +  +  V   ++  + + +++     K  +     +  A+   N+   A
Sbjct: 193 IQIHPGEASLKETLVRAVNGVYLKANMKNIEIEMEDFKDMMLPHDKKWTAEAFANVLDNA 252

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE--STIDSHDI 181
               P G  V I V    +     ++  G      E    F +   G+       +   +
Sbjct: 253 VKYSPEGTTVHIRVSPQISYVFVEIEDEGIGIAKEEYQNIFRRFYRGSRPEIEACEGAGV 312

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             Y V  +  E    +          V    L K
Sbjct: 313 GLYLVRQILEEQGGSIRAVAGKAGGTVFQMTLPK 346


>gi|114767135|ref|ZP_01446015.1| sensor histidine kinase [Pelagibaca bermudensis HTCC2601]
 gi|114540697|gb|EAU43765.1| sensor histidine kinase [Roseovarius sp. HTCC2601]
          Length = 426

 Score = 36.4 bits (83), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 15/172 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YT 74
            ++ S + HD+ +P+  +   L +LD+   E      +          L F R   G   
Sbjct: 222 TMMLSGVSHDLRTPLTRLRLGLSMLDDEDREPLERD-VEDMQRLIDAFLDFAR---GDAL 277

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
            +    +   DI + + D      R    V V   G+         + L NL    + ++
Sbjct: 278 AAAAEPVDPVDIVESVVDDAQRAGRNVALVSVEGEGQVSLRPLAMRRALENLV---NNAV 334

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
             G    +SV  S       ++ +G     PE+            +D    Q
Sbjct: 335 RYGSCCEVSVTLSDKSLRLRVEDDGPGI-PPERRED--AQRPFVRLDPARNQ 383


>gi|313496698|gb|ADR58064.1| Sensory histidine kinase CreC [Pseudomonas putida BIRD-1]
          Length = 478

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 23/206 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTG 75
           H++ SP+ AI  + ELL    +  +       +      RL+          R+      
Sbjct: 265 HELKSPLAAIRGASELLQGEDMPADQRARFAGNIERESERLQQMIERLLNLARVEQMQAL 324

Query: 76  SVDSLIGLGDIE-QVIEDFIAV--DKRVQVSWTGEKIDL----SRERAKILLNLFMVAHA 128
             +  + L  +  +++    A      +QV                  + L NL   A  
Sbjct: 325 EDEQQVALAALVDELLLAHAARIEGAGLQVRQRVPATLRLLCDPFLMRQALANLLDNALD 384

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEKFTQIVDGNVESTIDSHDIQ 182
             P GG +   ++ +      S+   G         R  E+F  +             + 
Sbjct: 385 FTPEGGTLLFDLERAGERVALSVFNQGQAIPAYAIGRVSERFYSLPRPGSGRKSTGLGLN 444

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVV 208
           F  V  +   +   L  + +D    V
Sbjct: 445 F--VAEVMQLHGGALAVDNVDGGVRV 468


>gi|226227148|ref|YP_002761254.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090339|dbj|BAH38784.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 885

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 62/154 (40%), Gaps = 12/154 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAIIRLK----FMRLAFGY 73
           I HD  + + AI  + ELL +        +L    I  ++  A    +    F R    +
Sbjct: 534 IAHDFNNYLSAIATNAELLRDELPLLSSHRLEASEILGAAQRASALTRQILVFSRRQVVH 593

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
              +D    +  + +++   +     V+++   +   +  +  ++   L+NL   A  ++
Sbjct: 594 DERLDVNSAIHALRRLLSRLVGEQIEVRITVAPDAPRVMFDHGRLEQVLMNLAANARDAM 653

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           P GG +TIS +         L+++ + A  P + 
Sbjct: 654 PAGGCLTISTE-RTTAGDLRLRVSDSGAGIPPEV 686


>gi|146282782|ref|YP_001172935.1| sensor histidine kinase [Pseudomonas stutzeri A1501]
 gi|145570987|gb|ABP80093.1| sensor histidine kinase [Pseudomonas stutzeri A1501]
 gi|327481120|gb|AEA84430.1| sensor histidine kinase [Pseudomonas stutzeri DSM 4166]
          Length = 483

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 76/216 (35%), Gaps = 36/216 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++   +       + ++L+      A+  +K      
Sbjct: 286 LFSAISHDLRTPITRLRLRVELLEDEAQQVKFNRDLDELELL---VKGALQCVK------ 336

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERA--KILLNLFM 124
                +   I   D+  ++E  +         RV +          +  A  + + NL  
Sbjct: 337 --DTDIHENIEAVDLNLLLEHIVEPYQACDQTRVTLDGRALATYPGKPLALKRCIGNLL- 393

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
               +L  G +  + V+D K   +  +   G     PE+  + V       +     Q Y
Sbjct: 394 --DNALKYGERAHLHVEDGKEALVLHVDDEGPG--VPEQRLEHVF-EPHVRLSGQQ-QGY 447

Query: 185 YVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            + L     +AH +   L    +    + ++  L +
Sbjct: 448 GLGLGIARNIAHAHGGELSMRNLQQGGLRVTLTLPR 483


>gi|146278410|ref|YP_001168569.1| integral membrane sensor hybrid histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556651|gb|ABP71264.1| integral membrane sensor hybrid histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 766

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 27/198 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM--QL--IRLSSMSAIIR----LKFMRLAFGY 73
           I HD  + + AI    +LL      ++     L  I  ++  A       L F R     
Sbjct: 403 IAHDFNNLLTAISGHCDLLLLRHDREDPEFADLVQIHQNANRAASLVGQLLAFSR----K 458

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126
                  I L ++   +   +     +RV +               R+  ++L+NL + A
Sbjct: 459 QTLKPERIELQEVLADLTHLLNRLVGERVTLRLAHAPELGPIRADKRQLEQVLMNLVVNA 518

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ---- 182
             ++P GG + I  +     +             P ++  I   +    I    +Q    
Sbjct: 519 RDAMPEGGVIRIETEALTLADELR---RDRAVVPPGRYAAIHVQDEGVGIPPDRLQKIFE 575

Query: 183 -FYYVILLAHENKIRLLP 199
            F+          + L  
Sbjct: 576 PFFTTKRTGEGTGLGLST 593


>gi|261404373|ref|YP_003240614.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261280836|gb|ACX62807.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 543

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNEN 147
            I+  +   K  Q       I   R + K + LN+   A  +LP GG + I +       
Sbjct: 410 AIQASLGGIKMTQCFGRNATILCDRNQIKQVFLNILKNAMEALPYGGNIHIQMDVEDGYQ 469

Query: 148 IFSLKINGNLA 158
             +   NG+  
Sbjct: 470 RVTFTDNGSGM 480


>gi|39996421|ref|NP_952372.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39983301|gb|AAR34695.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|298505431|gb|ADI84154.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 367

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 80/222 (36%), Gaps = 18/222 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQ----LIRLSSMSAIIR 63
           +  L AL  + + + H+I +P+G+I  + E+L D+    D   +    LI+ +     + 
Sbjct: 145 AERLSALGEMSAMLAHEIRNPLGSIRGTAEILRDDFSPGDRKFEFLEILIKETDRLNRVV 204

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVS-WTGEKIDLSRERAK- 117
             F+RLA    G         ++ +++     +  A    + +       +   RER + 
Sbjct: 205 EDFLRLARPLDGEKKRCDLAAELRELVTLQESEATARGIGLSLEAGEAPTVAGDRERLRQ 264

Query: 118 ILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGN---LARFPEKFTQIVDGNV 172
             LNL + A  +   GG+V +  +++ +  +    ++I  +       P +  +I     
Sbjct: 265 AFLNLILNALQATGEGGRVAVRLAMRGASGDMPAGVEITVSDTGRGIDPAQREKIFTPFF 324

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   +   +  E            L 
Sbjct: 325 TTKEGGTGLGLVITQRIVEAHGGTIGLESEPGRGTTFRVWLP 366


>gi|300694205|ref|YP_003750178.1| sensory histidine kinase in two-component regulatory system with
           ompr (envz) [Ralstonia solanacearum PSI07]
 gi|299076242|emb|CBJ35556.1| putative sensory histidine kinase in two-component regulatory
           system with OmpR (envZ) [Ralstonia solanacearum PSI07]
          Length = 434

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 15/146 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS-- 79
           I HD+ +P+  +    E+L +          I     S    ++   LA+  +G  ++  
Sbjct: 231 IAHDLKTPLSRLRLRAEMLTDPKAGAG----IERDVDSMSAIVEQF-LAYAQSGDSEARD 285

Query: 80  -LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKV 136
            ++    +  +++ F    K V +          +     +I++NL      +   G + 
Sbjct: 286 VMVDRH-LRGLVQPFAEQGKHVALDLRAGDRFRLKPTHLERIVVNLL---DNAFAYGAE- 340

Query: 137 TISVQDSKNENIFSLKINGNLARFPE 162
            + V  + +E  F+L +  + A  P+
Sbjct: 341 PVRVATAADERSFTLTVEDHGAGIPQ 366


>gi|221200309|ref|ZP_03573351.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
 gi|221205988|ref|ZP_03579002.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221174000|gb|EEE06433.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2]
 gi|221179650|gb|EEE12055.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia multivorans CGD2M]
          Length = 785

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 69/209 (33%), Gaps = 15/209 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT-GS 76
           + HD+ SP  AI   +E   +   +    Q   L    A   L    +F+ LA      S
Sbjct: 570 LSHDMRSPQAAILALIEQRRQAPADLSEAQFADLVGHYARWTLTLADQFLLLARAQARAS 629

Query: 77  VDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHAS 129
             + + L  +     D +   A  KRV++    E   L    A    +   NL   A   
Sbjct: 630 KATEVDLAPLLGDAVDDLWAHASAKRVRIRLFAEPGMLVVADALLLRRAFANLIDNAVRF 689

Query: 130 LPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            P G  VT+S  +       S+   G      + P  FT+    +       H +   +V
Sbjct: 690 SPEGATVTVSADERDGRWCVSVADTGIGIPAHQLPNLFTEFFRVDARGATAGHGLGLAFV 749

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       +  E       V + LL +
Sbjct: 750 KQVVDALGGEIHVESAVGRGSVFTVLLPR 778


>gi|229591085|ref|YP_002873204.1| putative transmembrane two-component sensor histidine kinase
           transcriptional regulatory protein [Pseudomonas
           fluorescens SBW25]
 gi|229362951|emb|CAY49879.1| putative transmembrane two-component sensor histidine kinase
           transcriptional regulatory protein [Pseudomonas
           fluorescens SBW25]
          Length = 439

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 22/172 (12%)

Query: 1   MAKNICFNLSSM--DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M  N+  ++      L A     + HD+ +P+  +   +ELL+     D++++ +   S 
Sbjct: 226 MQANLARHVEGRTRMLAA-----VSHDLNTPLTELRLQVELLEPGEARDDMLESLSELSA 280

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDL----S 112
                L F+R       +V        +  +++D     +R+Q  V+WTG    +     
Sbjct: 281 MVRETLNFVR-----DDAVQEPTTTLSLTALLDDLAKRYQRLQQPVNWTGAPPLMLTCRP 335

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               + L NL      +L   G   +S+   ++     ++I  +    PE +
Sbjct: 336 LALKRALTNLI---DNALHHAGDARLSLA-RQDNGWLCIEILDHGQGLPEDW 383


>gi|224368680|ref|YP_002602842.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223691396|gb|ACN14679.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 716

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 57/130 (43%), Gaps = 11/130 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  I  ++ELL      +     +  + + AI R        L+F R A     
Sbjct: 347 HDFNNLLHLIGGNIELLLMKKPANHRDVTLLKTVVKAIDRAAQLVRQLLQFSRNAEVKKQ 406

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPR 132
            VD    + +  +++E  I+    ++++       +     +  +I+LNL   A  ++P 
Sbjct: 407 RVDVNHEVTETVKMLERIISKTVSIKLNMDPSVWPIHADPTQVEQIVLNLGGNAVDAMPH 466

Query: 133 GGKVTISVQD 142
           GG++ IS+++
Sbjct: 467 GGRLEISIRN 476


>gi|154244983|ref|YP_001415941.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159068|gb|ABS66284.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 581

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 16/218 (7%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65
             L  L    + I H+I +P+G I  S EL+         ED +M  +          +K
Sbjct: 360 AQLATLGQAAAVIAHEIRNPLGIIKTSAELVRRKTPMAPSEDRLMMFVLDEVQRIDRLVK 419

Query: 66  -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLSRERAK---- 117
             +  A     +   L  +  I Q   DF+A + R   + ++       +  +  K    
Sbjct: 420 ELLDYARPPQCAAVPLDLVTSIVQPALDFMAPELRRRDITLAARLPDHPVPIQGDKDLLH 479

Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
             L+NL + A  +   GG V + V   ++  +  ++ NG      +    + D  V + +
Sbjct: 480 QALMNLLINAMDAAGDGGHVIVRVGQEEDSAVLHVEDNGPGV-PQDVRAALFDPFVTTKV 538

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +    V   A  +   +          + +  L 
Sbjct: 539 NGTGLGLATVRSTAEAHGGAVSHADAPGGGAIFTLRLP 576


>gi|153949138|ref|YP_001399860.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis IP
           31758]
 gi|170023128|ref|YP_001719633.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis YPIII]
 gi|152960633|gb|ABS48094.1| sensor protein CreC [Yersinia pseudotuberculosis IP 31758]
 gi|169749662|gb|ACA67180.1| integral membrane sensor signal transduction histidine kinase
           [Yersinia pseudotuberculosis YPIII]
          Length = 477

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 23/150 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ SP+ AI  + ELL E    +   + LI         R++ +         ++S + 
Sbjct: 265 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 322

Query: 83  LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           L                  + + V        K V  +       L    ++ L NL   
Sbjct: 323 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALTNLIDN 379

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155
           A    P GG++ +S +   +  + +++ +G
Sbjct: 380 ALDFTPAGGEINVSGERQDDTYLITVEDSG 409


>gi|217968805|ref|YP_002354039.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|217506132|gb|ACK53143.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 619

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 65/162 (40%), Gaps = 16/162 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           LL + I H+I +P+G++   LE ++         +D +   +R         L+  +   
Sbjct: 400 LLAAGIAHEIHNPLGSLRLGLEAMERRLRGRPERDDRIDDYLRTMDEEIDRCLQVTQRLL 459

Query: 72  GYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDLSRERA-------KILL- 120
             +    + +   D+  V+ D    +A D   +      + D +  R        ++L+ 
Sbjct: 460 MLSRPPQARVQPVDVNPVLADTSCLLAYDAENRQIEHILEADKAAPRVWADDADLRMLMI 519

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           NL   AH ++P GG+VT+      +E +  ++  G      +
Sbjct: 520 NLVQNAHHAMPSGGQVTLRSHIIGDEVLIEVEDTGVGIPEDD 561


>gi|123443579|ref|YP_001007552.1| sensory histidine kinase CreC [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090540|emb|CAL13409.1| putative histidine kinase sensor [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 475

 Score = 36.4 bits (83), Expect = 2.5,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 34/216 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMS--------AIIRLKFMRLAF 71
           H++ SP+ AI  + ELL E           M + + S+             RL+      
Sbjct: 265 HELKSPLAAITGAAELLRESPPPATAQRFLMNIEQQSTRIQQLVDKMLIQARLE------ 318

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLN 121
                VD  +   +I  +I+  +   +   VS       +  + A          + L N
Sbjct: 319 ---SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTN 375

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDS 178
           L   A    P GG+VT+S     +E + +++  G+        + F +       ++  S
Sbjct: 376 LIDNALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGIPDYAQEKIFDRFYSLARANSPKS 435

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +V  +A  ++  +  E    H V     L 
Sbjct: 436 TGLGLNFVREVAAIHQGNISLENRQRHGVCARLTLP 471


>gi|289805213|ref|ZP_06535842.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 134

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+  ++S  + +     +      P++   I      +  
Sbjct: 31  QVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQLEAIFTPYFTTKA 90

Query: 177 DS-----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D        +Q         ++   +  + I+    V +  L 
Sbjct: 91  DGTGLGLAVVQNI------EQHGGAIKVKSIEGKGAVFTIWLP 127


>gi|149927671|ref|ZP_01915924.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105]
 gi|149823725|gb|EDM82953.1| two-component hybrid sensor and regulator [Limnobacter sp. MED105]
          Length = 1532

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 33/169 (19%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDI---ISPI-----GAIHNSLELLDEVGIEDEVM 50
            +       L    L AL  + S I HDI   ISP        + N   L ++   +  ++
Sbjct: 1145 LQSTQNMVLQQERLHALAGMASGIAHDINNAISPATLYLESLLENEKNLSEKGYKQLRIV 1204

Query: 51   QLIRLSSMSAIIRL-KFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDF 93
            Q       + + R+ +F R     + S      + D   +                + + 
Sbjct: 1205 QTAIDDVSNTVDRMGRFAR-----SRSELEPANMCDANDMCLEAIELTRPRWGDMALRNG 1259

Query: 94   IAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQ 141
            I +    ++S    K+ +S    + IL NL + A  +LP+GG + +  +
Sbjct: 1260 ITIGITHELSNPLPKLAVSETELREILTNLILNAVDALPQGGHIQLKTE 1308


>gi|149177664|ref|ZP_01856265.1| sensor protein HYDH [Planctomyces maris DSM 8797]
 gi|148843482|gb|EDL57844.1| sensor protein HYDH [Planctomyces maris DSM 8797]
          Length = 261

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 56  SSMSAIIRLK--FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSW----TG 106
           S+     ++    +  A G + S    + L  + + +   +  D    RV +        
Sbjct: 79  SAGQRAAKITTGMLSYARG-SDSRQEPVDLVVLVKSVIALVEKDLSMNRVNLHTHFEAQP 137

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           E      +  ++L+NL + A  ++P GG++ ++V+ +   N+  + +  + A  P
Sbjct: 138 EVSLNPNQIQQVLVNLIVNARQAMPTGGRLDLAVRLNAEANMAEVIVRDSGAGIP 192


>gi|115379441|ref|ZP_01466541.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1]
 gi|115363550|gb|EAU62685.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 27/162 (16%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK-F 66
            L AL  + + + H+I +P+GAI  + + LD     G + E + +I          +  F
Sbjct: 173 RLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVVTAF 232

Query: 67  MRLA------FGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRE 114
           +  A      FG T        L ++       I       ++  V++  T  K+D   E
Sbjct: 233 LDYARPLKQNFGPT-------DLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAE 285

Query: 115 RAK-ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKIN 154
           + K +L+NL   A  ++ P  G++T+          F   + 
Sbjct: 286 QLKQVLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVA 327


>gi|312962808|ref|ZP_07777295.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
 gi|311282835|gb|EFQ61429.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
          Length = 475

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 74/214 (34%), Gaps = 27/214 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFG 72
           + L S I HD+ +PI  +   +ELL++  ++      +  + L    A+  +K       
Sbjct: 272 SQLFSAISHDLRTPITRLRLRVELLEDENLQTKFGRDLDELELLVKGALQCVK------- 324

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLFM 124
               +   I   D+  V+E  +        + RV +          +  A  + + NL  
Sbjct: 325 -DTDIHENIQPVDLNHVLECLVEPYVAPNGNGRVTLDGYALAAYPGKPLALKRCIGNLI- 382

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181
               +L  G    + ++D   + I  +   G      R  + F       +      + +
Sbjct: 383 --DNALKYGQNAHLHIEDDGAQFILHVDDEGPGVPEQRLEQVFEPHF--RLSGQQQGYGL 438

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +AH +   +  + + +  + ++  L +
Sbjct: 439 GLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPR 472


>gi|283852844|ref|ZP_06370106.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283571754|gb|EFC19752.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 508

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 16/155 (10%)

Query: 18  LCSRICHDIISPIGAIH------NSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FM 67
           L S + H+I +P+ A        + +E  D      E   ++          LK    F 
Sbjct: 286 LSSYLAHEIRNPLFAASGFARQLSRME--DLPQKAREKAGIVVEELTRMEALLKQFLEFA 343

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERA---KILLNLF 123
           R   G  G  D    +GD  +            + V+   +   ++ + A   + L+NL 
Sbjct: 344 RPVGGIVGVADVGRAIGDAVEASRSQAEGKSVGLAVALASDLPVVTFDPALLKQCLVNLV 403

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             A A+LP GG VT+            +  +G   
Sbjct: 404 RNAVAALPGGGLVTLDADRDGERVRLRVTDSGRGL 438


>gi|218677306|ref|ZP_03525203.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium etli CIAT 894]
          Length = 204

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 51/159 (32%), Gaps = 13/159 (8%)

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +  +Q  R  +      L F R            + L ++   + D +       VS   
Sbjct: 44  EGALQGARRGAALTQRLLAFAR----QQDLQVRPVDLAELVSGMNDLLRRSVGTSVSIEP 99

Query: 107 ------EKIDLSRERAKI-LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                     +   + ++ LLNL + A  ++P GG+++IS+++ +          G+   
Sbjct: 100 TLPARMPPALVDANQLELALLNLAVNARDAMPDGGRLSISLREERVVGNDGDLGEGSYLV 159

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198
                     G    T+      F+    +     + L 
Sbjct: 160 L--AVADSGTGMDAETLKKAVDPFFSTKEVGKGTGLGLS 196


>gi|331698589|ref|YP_004334828.1| histidine kinase [Pseudonocardia dioxanivorans CB1190]
 gi|326953278|gb|AEA26975.1| histidine kinase [Pseudonocardia dioxanivorans CB1190]
          Length = 443

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 13/187 (6%)

Query: 24  HDIISPIGAIHNSLEL-LDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           H + +P+  +  SLE  LD+   +     D+ +        +    L   R      G+V
Sbjct: 228 HQLRTPLAGLRLSLETALDDPEADLRAAIDDAVHAADGLQRTVEDLLALARDIRTGRGTV 287

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN--LFMVAHASLPRGG- 134
           D +  + D+ +     +    R  +    E+  L    ++  +   L ++   +L  GG 
Sbjct: 288 DMVSLVADVVEPWRRLLVERGRTLLV-RAEEGLLPASASEAAIRQVLAVLLENALQHGGG 346

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE--KFTQIVDG-NVESTIDSHDIQFYYVILLAH 191
            VT+ V+D+       +   G     P    F +   G +       H I       LA 
Sbjct: 347 TVTVDVRDAAGALAVDVSDEGPGILMPPTTLFARRSAGIDGPRPTGGHGIGLALARSLAE 406

Query: 192 ENKIRLL 198
               RL 
Sbjct: 407 AEGGRLT 413


>gi|256390004|ref|YP_003111568.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256356230|gb|ACU69727.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 505

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 55/155 (35%), Gaps = 9/155 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLI----RLSSMSAIIRLKFMRLAFGY 73
           + H++ +P+ A+    ++L+E            QLI    R  +      ++  R   G 
Sbjct: 288 VSHELRTPLTAMTAVSDMLEEATDVGDESAPAAQLIVTETRRLARLVEDLMEVSRFDAGT 347

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
                  + L  +     D      RV ++     + ++ ++ +I + +  +   ++  G
Sbjct: 348 AQLRREDVDLVALVHGCLDARGWTGRVTLN-VPPSLAVTVDQRRIDVIVANMVGNAIKHG 406

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           G+  + +          L++  +    P    + +
Sbjct: 407 GEGPVELSIGAFGPNLVLQVRDHGPGIPPDALEHI 441


>gi|149922767|ref|ZP_01911192.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149816387|gb|EDM75888.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 783

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           ++LLNL   A  ++PRGG + I +      +     ++      PE+ 
Sbjct: 666 QVLLNLLSNAVDAMPRGGTIRIRL-GEGEADTVIFAVSDEGMGIPEEI 712


>gi|16263071|ref|NP_435864.1| FixL-related histidine kinase [Sinorhizobium meliloti 1021]
 gi|14523729|gb|AAK65276.1| FixL-related histidine kinase [Sinorhizobium meliloti 1021]
          Length = 528

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 71/178 (39%), Gaps = 15/178 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78
           + HD  + +  I  +LE+++    ++++M L++ +  +A    +L    LAFG       
Sbjct: 169 LAHDFNNLLTVITGNLEMIEARLQDEKLMPLLQEAQAAADDGAKLTAQLLAFGRRQPLNP 228

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVS------WTGEKIDLSRERAK-ILLNLFMVAHASLP 131
            L+ +G++       +       +        +     +   + +  +LNL + A  ++P
Sbjct: 229 KLVDVGELVTNFSKLLTRTLGETIELSTVVKGSANLALIDVSQLQNTVLNLGLNARDAMP 288

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN---VESTIDSHDIQFYYV 186
            GG++TI V  +  +  ++L +     R        V      +   +  H  + +Y 
Sbjct: 289 NGGRLTIEVSTTVLDRDYALML--PEVRMGHYVLVAVTDTGVGMTEEVKRHAFEPFYT 344


>gi|118579852|ref|YP_901102.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502562|gb|ABK99044.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 691

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 20/181 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS-AIIR-LKFMRLAFGY 73
           LL   I HD  + + AI  ++ L   +       + L+  S  +    R L    L F  
Sbjct: 331 LLAGGIAHDFNNLLAAIMGNISLASMLLQPGSRSVSLLAESEKACLRARDLTLQLLTFSK 390

Query: 74  TGS-VDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDLSRERAKILLNLFMV 125
            G+ V  L  +  I +    F+        +       W  E      + ++++ NL + 
Sbjct: 391 GGAPVRRLASVEQIVRESASFVVRGSGTFCNFHVANGLWQAEID--EGQISQVIHNLVIN 448

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  ++P GG +TI+  +         +   +L R         +G     +       Y+
Sbjct: 449 AVQAMPHGGVITITCSN----VAAVTEGEADLVRID--IEDQGEGITPE-VLPRIFDPYF 501

Query: 186 V 186
            
Sbjct: 502 T 502


>gi|330963153|gb|EGH63413.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 468

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++   +       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        D RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEQVDLNALLECLVEPWLTADGDGRVTQLGEAQAAYPGKPLALMRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|153003402|ref|YP_001377727.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026975|gb|ABS24743.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 659

 Score = 36.4 bits (83), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMRLAFGY 73
           + H++ +P+  + N+L +L+     ++          + +   S      L   R++ G 
Sbjct: 299 LSHELRNPLAPMWNALGVLERPDASEDTSRRAQAVLQRQLAHLSRLVDDLLDLTRISRGK 358

Query: 74  TGSVDSLIGLGDI-EQVIED----FIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125
                + +GL ++  +  ED    F      + V      + +S +  ++   + NL + 
Sbjct: 359 IQLRPAPLGLTEVVRRAAEDHRPLFAEAGVALDVRLPDAPVPVSGDATRLTQIVGNLLLN 418

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155
           A    PRGG V + +   + + +  ++  G
Sbjct: 419 AVKFTPRGGHVLLELTPGEKDALLRVRDTG 448


>gi|217969645|ref|YP_002354879.1| histidine kinase [Thauera sp. MZ1T]
 gi|217506972|gb|ACK53983.1| histidine kinase [Thauera sp. MZ1T]
          Length = 486

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 28/177 (15%)

Query: 12  MDLVALLCSR------ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMS 59
           + L  L   R      + H++ +P+ ++   + LL++         + EV  ++  S+ +
Sbjct: 256 LRLAELEADRGRVLRHVSHELKTPLASLREGVALLEDGVLGPLEPEQREVTAILAHSART 315

Query: 60  AIIRL-KFMRLAFGYTGSVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKI 109
              R+ + +RL        D+         ++         +   A  +RV +   G+  
Sbjct: 316 LQARIEQLLRL---NASQFDARSLHLQPTALLPLLRKIGEEQRLPARARRVTIGLAGDAP 372

Query: 110 DLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +  +  K+     NL   A A  P GG + I ++ +    +   +  G      E 
Sbjct: 373 IVHADAGKLHSVFSNLLANAIAFSPTGGHIRIELRRAGENVVIDCRDEGPGIAPDEL 429


>gi|86138309|ref|ZP_01056883.1| sensory box sensor histidine kianse/response regulator [Roseobacter
           sp. MED193]
 gi|85824834|gb|EAQ45035.1| sensory box sensor histidine kianse/response regulator [Roseobacter
           sp. MED193]
          Length = 771

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 74/195 (37%), Gaps = 25/195 (12%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77
           HD  + + AI    +LL    + G +D    LI+   ++  A   +  + LAF      +
Sbjct: 406 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAASLVSQL-LAFSRKQTLL 463

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130
             ++ + D    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++
Sbjct: 464 PEVLDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAM 523

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIVDGNVESTIDSHDIQ-----FY 184
           P GG++ +  +           +  + A  PE  +  +   +    I    +Q     FY
Sbjct: 524 PNGGEIRVRTE----AVTLEKPLKRDRASVPEGNWITVKVSDEGVGIPPDKLQKVFEPFY 579

Query: 185 YVILLAHENKIRLLP 199
                     + L  
Sbjct: 580 TTKRTGEGTGLGLST 594


>gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 546

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 26/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSS----MSAIIRLKFMRL 69
           S I H++ +P+  I    E +     +       E +Q+I   +          L   R+
Sbjct: 321 SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRI 380

Query: 70  AFGYTGSVDSLIGLGD-IEQVIEDFIAV-DKRVQVSWTGEKIDLS-----RERAKILLNL 122
           A G      S + L   +++V+  F A    R++                    ++  NL
Sbjct: 381 AAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDDMPPVYADYERLRQVFTNL 440

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-------DGNVEST 175
              A    P GG + I  +      I  +   G     P +   ++       D  +   
Sbjct: 441 IENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIG--IPPEEQDLIFERFYRVDNRLRRD 498

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  Y    +   +  R+  E            L 
Sbjct: 499 RPGSGLGLYITRAIVEAHGGRIWVESQVGRGSRFLFTLP 537


>gi|158339446|ref|YP_001520623.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309687|gb|ABW31304.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 496

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 71/211 (33%), Gaps = 30/211 (14%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLS-------SMSAIIRLKFMRLAFGYTG 75
           H++ +PI  +   LEL+ D+   ++E ++L+              I   K  R  F    
Sbjct: 287 HELRTPITIVRGHLELMGDDPKEQEETIELVLDELDRMGRLVNDMIALTKSERPDF---- 342

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKI---LLNLFMVAHAS 129
               +I L      +  F          W  +      +  +R ++   LLNL   A   
Sbjct: 343 LQYEMIDLNQFMDEL--FTKAQALADRDWQLQLNCSSSMMGDRQRLTGALLNLLRNATQH 400

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHDIQF 183
            P  G + +  + + ++ IF +K NG         R  ++F ++         D   +  
Sbjct: 401 TPASGTIELGCKQTFSQVIFWVKDNGEGMTLEEQLRIFDRFARLGKRQS----DGSGLGL 456

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V      ++ ++  E         +  L 
Sbjct: 457 AIVKAFTKAHRGKIDVESQPGRGSTFTITLP 487


>gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 969

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 64/214 (29%), Gaps = 24/214 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAI---------IRLKFM 67
           + HD+ +P+ AI     +L     ED          I  S                L+  
Sbjct: 745 VSHDLRTPLSAIIMGARVLGGGAAEDPERVRATATRIASSGERMNRLIGDLLDLASLERG 804

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILLNLFMV 125
           RL+   +    S +   +   VI    A  K + V W        +  +  +IL  L  +
Sbjct: 805 RLSMRRSAHAPSTLAR-EAADVIRP-AAEAKGLDVRWRAADDLPLVPCDHDRILQVLGNL 862

Query: 126 AHASL--PRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHD 180
              ++     G V I      ++ +F ++  G        P  F +   G   +      
Sbjct: 863 TSNAVKATASGHVAIGASARGDQVLFEVQDTGPGIPSEELPHVFDRFRRGR-SAAYAGTG 921

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L   +  R+  E       V+   L 
Sbjct: 922 LGLAIARALVEAHGGRIWAESTPGLGTVVRFSLP 955


>gi|115373919|ref|ZP_01461210.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
 gi|115369047|gb|EAU67991.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
          Length = 816

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 33/220 (15%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVM---QLIRLSSMSAIIRLK----F--MRLAF 71
           + HD+ +P+GAI  +  LL    G+ +  +   Q I  S   A   ++    F   RL  
Sbjct: 600 VSHDLRNPLGAITMAAGLLQASPGLSERQLKAAQRIASSCERATRLIRDLLDFTQARLGT 659

Query: 72  GYTGSVDSLIGLGDIEQVIED--FIAVDKRVQV---------SWTGEKIDLSRERAKILL 120
           G        + L D+ + + D   +    R             W  ++I      A++L 
Sbjct: 660 GIP-LNRRPMDLHDVTRHVVDEVLLTHPGRHVQVESSGEGWGEWDPDRI------AQVLT 712

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTID 177
           NL   A A  P    V +            +   G        P  F  +  G       
Sbjct: 713 NLLGNALAYSPAHTPVRVRTLGEPEGARLEVHNQGTPIPAELLPRLFEPLTRGAPSENQP 772

Query: 178 SHDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  I    Y V  +   +   +     +      +  L +
Sbjct: 773 NRSIGLGLYIVREILAGHGGTIEVASNEAAGTTFTVRLPR 812


>gi|91976178|ref|YP_568837.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91682634|gb|ABE38936.1| cell cycle control histidine kinase CckA [Rhodopseudomonas
           palustris BisB5]
          Length = 850

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           MD +  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 464 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 523

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118
           LAF         ++ L +    I+  +     ++V ++       W  +      E+   
Sbjct: 524 LAFSRKQTLRPQVLDLREALTDIDRLLKRLIGEKVTLTMPHGRDLWRVKADVSQFEQV-- 581

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ++NL + A  ++P GGK+TI   +    +   L   G
Sbjct: 582 IVNLAVNARDAMPDGGKLTIRTCNVTAADAAQLAHKG 618


>gi|331091535|ref|ZP_08340372.1| hypothetical protein HMPREF9477_01015 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403700|gb|EGG83254.1| hypothetical protein HMPREF9477_01015 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 505

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 15/171 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLI-----RL 55
                 L    L A L   I HD+ SP+ +I  + E L  +E  ++ E  Q I       
Sbjct: 268 SESEMRLEKERLRANLLRSISHDLRSPLTSISGNAENLMTNETKLKQEKRQKIYQDIYDD 327

Query: 56  SS---MSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           S          L   R+  G    ++   +    IE+ ++      K+ ++    E+I +
Sbjct: 328 SVWLINLVENLLSVTRIENGTMELNIQGEVAEEVIEEALKHINRRGKQQKIMIDCEEILI 387

Query: 112 SRERAKILL----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           ++   K++     NL   A    P+G ++ +  +   ++ +F +K NG   
Sbjct: 388 AKMDVKLIFQVLINLVDNAVKYTPKGAEIVVGAKKCGDKVVFFVKDNGQGL 438


>gi|192292771|ref|YP_001993376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286520|gb|ACF02901.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 880

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           MD +  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 494 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 553

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID-LSRERA----KILL 120
           LAF         ++ LG+    I+  +     +++ +     +    ++       ++++
Sbjct: 554 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKISLEMQHGRDLWRTKADVSQFEQVIV 613

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           NL + A  ++P GGK+TI   +        L  NG
Sbjct: 614 NLAVNARDAMPDGGKLTIRTANVTASEAAQLGHNG 648


>gi|169125729|gb|ACA48227.1| LipQ [Pseudomonas alcaligenes]
          Length = 984

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 65/177 (36%), Gaps = 21/177 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           + S  L ++  L + + H+I +P+  I    + L E    DE +  I    +    R+  
Sbjct: 749 VHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREEREGDEELGEISNQILDQTKRIS- 807

Query: 67  MRLA-----FGYTGSVDS---LIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRER 115
            R+      F + G        + L ++ Q     +        VQ     +   L++  
Sbjct: 808 -RIVQSLMNFAHAGQQQRAEYPVSLAEVAQDAIGLLSLNRHGTEVQFYNLCDPEHLAKGD 866

Query: 116 ----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               A++L+NL   A  + P GG + +  +  +   +  ++  G     P+     +
Sbjct: 867 PQRLAQVLINLLSNARDASPAGGAIRVRSEAEEQSVVLIVEDEGTG--IPQAIMDRL 921


>gi|220922552|ref|YP_002497854.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947159|gb|ACL57551.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 766

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +  +  SL++L +   +D  ++ +  ++  A  R        L F R       
Sbjct: 404 HDFNNLLSVVLASLDVLKKRLPDDPKLRRLLDNAEQATQRGAALTQRMLAFAR----RQH 459

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--------LLNLFMVAH 127
                + L  +   + D +       V     +  LS              LLNL + A 
Sbjct: 460 LKPQAVDLASLVHGMSDLLQRSLGPTVQIE-TRFPLSLPVVMADAHQLELALLNLSVNAR 518

Query: 128 ASLPRGGKVTISVQDSKNENIFS 150
            ++P+GG +TIS  +    +   
Sbjct: 519 DAMPKGGAITISACEGDQPSDLG 541


>gi|118581413|ref|YP_902663.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118504123|gb|ABL00606.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 953

 Score = 36.4 bits (83), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 26/202 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + + FN   +D + LL   I HD  + + +I  ++ L      E + ++     +  A
Sbjct: 569 MEEEL-FNARKLDSIGLLAGGIAHDFNNLLTSILGNISLTRMQVGEGDRLRRNLDEAEKA 627

Query: 61  IIR--------LKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +R        L F R      G       + L  I +    F     R    +      
Sbjct: 628 SLRAKDLTQQLLTFSR------GGAPVRKTVSLTAIIRDSATFTLSGSRTTCRFQIPDDL 681

Query: 111 LS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI-NGNLARFPEKF 164
                   + ++++ NL + A  ++P GG++ I   +        L +  G   R     
Sbjct: 682 YPVDVDEGQFSQVINNLVLNADQAMPAGGEIEIVCANVTLARESHLPLPAGAYVRIS--- 738

Query: 165 TQIVDGNVESTIDSHDIQFYYV 186
            +     +   +       Y+ 
Sbjct: 739 VRDRGEGIPEELVPRIFDPYFT 760


>gi|311107427|ref|YP_003980280.1| sensory box protein 8 [Achromobacter xylosoxidans A8]
 gi|310762116|gb|ADP17565.1| sensory box protein 8 [Achromobacter xylosoxidans A8]
          Length = 397

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 19/148 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + HD  + I  I  + ELL    +  E     +  I  ++  A    + M LA+      
Sbjct: 171 LAHDFNNFISVIDGAAELLRNPELAPEKRVKYLNAIADTAQRATHLTQQM-LAY--ARRQ 227

Query: 78  DSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
                  D+       + + +  +    RVQ     +   +  + +++   LLNL + A 
Sbjct: 228 PLEPSQVDVGLCIEGMKPIFQATLGAAVRVQYQLPDDPCLICADVSQLENALLNLVVNAA 287

Query: 128 ASLPRGG--KVTISVQDSKNENIFSLKI 153
            ++P GG  ++ +S  DS+ +    L  
Sbjct: 288 DAMPFGGNVRIAVSCVDSRPDEQGGLAA 315


>gi|302187742|ref|ZP_07264415.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 676

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 17/144 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGRIEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P GG + +   + + +  F+
Sbjct: 431 RDAMPDGGTLVVETSNQQLDRSFT 454


>gi|153007213|ref|YP_001381538.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030786|gb|ABS28554.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 667

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 25/227 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLK 65
           L +  L AL  L + I H++ +P+ AI   L +L  ++G      +LI  +   A    +
Sbjct: 437 LRTRRLAALGSLGAGIAHELNNPMTAITGYLAILRKQLGPASPQGELISHAQEQAA---R 493

Query: 66  FMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113
             R+       A     +      L    +   D      R      ++ +     D   
Sbjct: 494 VARVIEDLRSFADQERAAQGQRFSLVRPVRAAVDLYEDRLRAAGIEVRIRFDEPLPDTQG 553

Query: 114 ERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVD 169
           +  ++   + +L   A  ++P+GG + +SV  S + +   L++       P +   +I D
Sbjct: 554 DPVQLQQVVAHLVENAINAMPQGGVLEVSV-GSIDGDALRLRVADTGKGIPSQLRERIFD 612

Query: 170 GNVESTIDSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +  +         +   ++ ++L E  +     ++ LL 
Sbjct: 613 PFFTTKDQAGRVGLGLSVSHSIVEAHRGKILVESEEGTGSAITVLLP 659


>gi|218673213|ref|ZP_03522882.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli GR56]
          Length = 498

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           I HD  + + A+  SLE+L +   +D  +  L+  +   A     L    LAF  +   +
Sbjct: 135 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 192

Query: 79  SLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128
             +   D+  ++   + +  R                  I     + ++ +LNL + A  
Sbjct: 193 LHMEPIDVSGLVRGMMDILSRSLGPLTTIETSYPVRLPTILTDPNQLEMAILNLVVNARD 252

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178
           ++P GG++T+   +            G   R    ++   +    +E  +  
Sbjct: 253 AMPAGGRITLRASEESIAAGKGPLSAGRYIRIAVIDEGEGMDAKTLEQAVTP 304


>gi|306841845|ref|ZP_07474527.1| Nitrogen regulation protein ntrB [Brucella sp. BO2]
 gi|306288072|gb|EFM59469.1| Nitrogen regulation protein ntrB [Brucella sp. BO2]
          Length = 380

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ +  +  A   R    +      +   R    ++ L
Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L+++G   R   P +F    +G  V   
Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVSGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|108797688|ref|YP_637885.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119866776|ref|YP_936728.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|126433313|ref|YP_001069004.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
 gi|108768107|gb|ABG06829.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119692865|gb|ABL89938.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|126233113|gb|ABN96513.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
          Length = 344

 Score = 36.4 bits (83), Expect = 2.8,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 30/227 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +S   LVA +     HD+ +P+  I    E + +  +  + ++          I
Sbjct: 105 SERAAEMSRRQLVAFVS----HDLRTPLAGIRAVSEAIADGLVGGDEVRAHAKHIEQESI 160

Query: 63  RL-----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLS- 112
           RL         ++    G+V        +++V++D +A      +R  V    E  D   
Sbjct: 161 RLSEMVDDLFEMSKINAGAVQPTFDRVALDEVVDDVLAAHRIAAERAGVQLRAELPDEPV 220

Query: 113 ------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEK 163
                 R   ++L NL   A A  P GG+V +++   +N     +   G   + A  P  
Sbjct: 221 RVLGSDRALVRVLSNLVANAIAHTPEGGRVQLALGSDENVAWARVDDTGVGIDEADLPRV 280

Query: 164 FTQIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIID 203
           F     G+ +       S      +       L   ++  L    +D
Sbjct: 281 FDVAYRGSNDRVPREDSSLPSGSGLGLAIAAGLVQAHRGTLSAHNLD 327


>gi|260575598|ref|ZP_05843596.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259022241|gb|EEW25539.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 767

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 23/155 (14%)

Query: 22  ICHDIISPIGAIHN--SLELLDEVGIEDEVMQL--IRLSSMSAIIR----LKFMRLAFGY 73
           I HD  + + AI     L LL  V  + E   L  I  ++  A       L F R     
Sbjct: 405 IAHDFNNLLTAISGHCDLLLLRHVQADPEYADLVQIHQNANRAASLVGQLLAFSR----K 460

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVA 126
                  + L ++   +   +     +RV +               R+  ++++NL + A
Sbjct: 461 QTLKPERLDLQEVLSDLTHLLNRLVGERVNLRLAHAPDLGPIRADKRQLEQVVMNLVVNA 520

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++P GG + I             ++  + A  P
Sbjct: 521 RDAMPEGGTIRI----ETEALTLRDELRRDRAVVP 551


>gi|330898374|gb|EGH29793.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 417

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 51  IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 108

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I V+    V      ID  +     LLNL + 
Sbjct: 109 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 167

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++PRGG++TI   +   +E     +            +    G     I+     F+
Sbjct: 168 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 227

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 228 TTKPLGQGTGLGLS 241


>gi|256422971|ref|YP_003123624.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037879|gb|ACU61423.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 475

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMRL 69
           L S I HD+ SP+ +I  +L L+ E  +E+E         + L + +S      L + +L
Sbjct: 247 LFSIIAHDLQSPLNSIITTLHLIAEYDLEEEEKKMLGDELLTLTKNTSSLLTNLLTWSKL 306

Query: 70  AFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKID---LSRERAKILL-NL 122
                G   S   + +  +    I+  +A  K V ++   +            ++++ NL
Sbjct: 307 QMDGKGVRLSAENVHEAVERVLTIQRLLAEKKAVSITSRVDPDVYITADHNMLELIIRNL 366

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              A    P GG++ I ++  +      +  NG
Sbjct: 367 VNNAIKFTPSGGQIAIDIRLIEEYCHLMISDNG 399


>gi|167032027|ref|YP_001667258.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
 gi|166858515|gb|ABY96922.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
          Length = 484

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 78/218 (35%), Gaps = 38/218 (17%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           + L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K   +
Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
                      + L  + +++ +    D R+ V          +  A  + + NL     
Sbjct: 341 -----HENLEPVDLNQVLEILAEPYLRDGRITVDGRALAPYPGKPLALRRCIGNLI---D 392

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182
            ++  G +  + + DS    +  +   G           +    +E   + H       Q
Sbjct: 393 NAIKYGERARLRIIDSAEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443

Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            Y + L     +AH +   +    + +  + ++  L +
Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481


>gi|254462821|ref|ZP_05076237.1| sensor histidine kinase [Rhodobacterales bacterium HTCC2083]
 gi|206679410|gb|EDZ43897.1| sensor histidine kinase [Rhodobacteraceae bacterium HTCC2083]
          Length = 439

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74
            ++ S + HD+ +P+  +   L +L++   E      +          L +F+  A G  
Sbjct: 236 TMMLSGVSHDLRTPLTRLKLGLSMLEDEDREP-----LERDVEDMRRLLDEFLNFASGSA 290

Query: 75  GSVDSLIGLGDIEQVI-EDFIAVD---KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
                L     + Q+  ED + ++   K ++V      +       + L NL      ++
Sbjct: 291 EGEQELSDPARLTQLAIEDAVRMEMAVKMLKVEAGPHVMLNPLSMRRALDNLI---GNAV 347

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFP------EKFTQIVDGNVESTIDSHDIQFY 184
             G    +SV  ++    F ++ +G            + F ++     +       +   
Sbjct: 348 RYGTLAQVSVLRTEKTVTFRVEDDGPGLAEDLYGAAVKPFVRLDPARNQDKGTGVGLGLA 407

Query: 185 YVILLAHENKIRLLPEIID 203
               +A  +   L     D
Sbjct: 408 ITNDIARAHGGSLRFSKSD 426


>gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 776

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 21/199 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGY 73
           + H++ +P+  + N LE+L      D  +   R          +      L+  R+  G 
Sbjct: 422 LAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGK 481

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL-----SRERAKILLNLFMV 125
                  + L    Q   +      +     +S T  +  L         ++++LNL   
Sbjct: 482 LELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNN 541

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDSHD 180
           A    P GG ++++ +   +E +  ++ +G                 +   ++ +     
Sbjct: 542 AAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLG 601

Query: 181 IQFYYVILLAHENKIRLLP 199
           I    V  LA  +   +  
Sbjct: 602 IGLALVRGLAELHGGTVAA 620


>gi|300022124|ref|YP_003754735.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523945|gb|ADJ22414.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 630

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 14/172 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     L  ++ V  L   I HD  + +  I  +LELL+      +  +L+  +  +A  
Sbjct: 248 RESSLRLQKLEAVGQLTGGIAHDFNNLLTIISGNLELLEGTIENPDDRELLSRAMRAADS 307

Query: 63  RLKFMRLAFGYTGS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLSRERA 116
             +  R    +         +I L +  + + + +       +         + L+R  A
Sbjct: 308 GARLTRRLLTFARRRQLAPEVINLNEQVRSMTELLHRTLGATIDLQTSFARDLWLTRADA 367

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSL-KINGNLARF 160
                 ++NL + A  ++P GGK+ I   +     +E  F    + G+  R 
Sbjct: 368 GEVESAVINLAINARDAMPNGGKLAIRTSNAALEGDEVGFEGPLVAGDYVRV 419


>gi|148265761|ref|YP_001232467.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399261|gb|ABQ27894.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 367

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 78/219 (35%), Gaps = 22/219 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLK-FM 67
           +L A+L     H+I +P+G+I  + E+L +     E     ++++   +      ++ F+
Sbjct: 153 ELSAVLA----HEIRNPLGSIKGTAEILKDSFRPGESNYEFLEILLKETDRLNRVVEDFL 208

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERAK-ILLN 121
            LA        +   + ++ +++           VS      +L      RE+ +   LN
Sbjct: 209 GLARPLQVERATCDIMAELNEIVTLISTEAAARGVSIELNPAELPAVHGDREKLRQAFLN 268

Query: 122 LFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           L M    +  RGGK+T+S       ++S      S    G     P++  +I +    + 
Sbjct: 269 LLMNGLQATGRGGKLTVSASCPGPAEESPAVVELSFADTGEGI-EPDRLNRIFEPFFTTK 327

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D   +       +   +   +            +  L 
Sbjct: 328 PDGTGLGLAITQKIVESHGGSIQVASEKGKGTTFTVRLP 366


>gi|90421890|ref|YP_530260.1| GAF sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90103904|gb|ABD85941.1| GAF sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 618

 Score = 36.4 bits (83), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 26/220 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           + HD+ + +  I  ++E+L     +   +  I      A +R        L F R    +
Sbjct: 240 LAHDLNNILTVISGTIEILAAAVADRPQLAAIAKMIDEAAVRGAELTQRLLAFARKQPLH 299

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDL-SRERAKILLNLFMVAHASL 130
             ++D    + +   ++   +         ++    +  +   +    +LNL + A  S+
Sbjct: 300 PRAIDVNALIVEATNLLRPTLGDHITLVTTLAGELSRALIDPGQLTNTILNLALNARDSM 359

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL-- 188
           P GG+V+I+ +D   +   +     +   +           + + I     + ++     
Sbjct: 360 PEGGEVSITTRDIVLDASAAAANELDAGSYVLVAVGDSGHGIPADILPRVFEPFFTTKDV 419

Query: 189 -------------LAHENKIRLLPEIIDDHNVVLSALLEK 215
                           ++   ++ E + DH   ++ LL +
Sbjct: 420 GKGSGLGLSMVYGFVKQSNGHVVIESVPDHGTTVTMLLPQ 459


>gi|254704407|ref|ZP_05166235.1| Nitrogen regulation protein ntrB [Brucella suis bv. 3 str. 686]
 gi|261755084|ref|ZP_05998793.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686]
 gi|261744837|gb|EEY32763.1| signal transduction histidine kinase [Brucella suis bv. 3 str. 686]
          Length = 380

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ +  +  A   R    +      +   R    ++ L
Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MPPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|315498130|ref|YP_004086934.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416142|gb|ADU12783.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 506

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 14/160 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-------IIRLKF 66
           + A+L S + HD  +P+  I  +LE L E  ++ E   ++      A       +  ++ 
Sbjct: 276 MSAMLSS-LSHDFKTPLVGIVGALEAL-EGRVDSEARDIVADGLAEALRLNRYVVNLVEI 333

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILLNLFM 124
            RL  G     + L     I  V+     +  R +   T E     L+   +   L L  
Sbjct: 334 SRLEAGVRPRSEPLHIRDAISGVLRTLRPLIGRQKFRITVEAGFPLLNLNASLFDLVLLN 393

Query: 125 VAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFP 161
           +   +L  G   G++TI  + + +     +   G     P
Sbjct: 394 LIENALKYGPAEGEITIDARVTSDSVEIDVDDEGAGIPPP 433


>gi|307825998|ref|ZP_07656212.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307732973|gb|EFO03836.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 619

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 31/166 (18%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSMSAI----IRL 64
           + +A+L     H++ +P+  I N+  +LD + +ED  +    ++I+   M         L
Sbjct: 239 EFLAMLA----HELRNPLAPISNAAHILDMLKLEDPRLSWAKEIIKRQVMHLTHLVDDLL 294

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKIDLSRERAKI- 118
              R+A G        + L ++ + + D      +A  + + V    + I L  +  ++ 
Sbjct: 295 DISRIARGKISLKKERLDLVEVIKSVLDTARGPILAKQQHLDVHLPEQPILLEGDSVRLS 354

Query: 119 --LLNLF-----------MVAHASLPRGGKVTISVQDSKNENIFSL 151
             LLNL             +       G +V I V+D+       L
Sbjct: 355 QVLLNLLDNAGKYSLENAQIEVDVQLYGTEVEIQVRDNGTGISAGL 400


>gi|226227949|ref|YP_002762055.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226091140|dbj|BAH39585.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 540

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 62/170 (36%), Gaps = 23/170 (13%)

Query: 22  ICHDIISPIGAI----HNSLELLDEVGIED------EVMQLIRLSSMSAIIRLK----FM 67
           + HD+ +P+ A+       L      G ED      E ++ IR ++      ++      
Sbjct: 322 VSHDLRNPVNAVVMLTGAVLSRETPAGAEDVGIMGREEVEAIRGAARQVDGLIQDLQDVS 381

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERA-KIL 119
           R++ G        +   ++ +   D         A+D           +   R R  ++L
Sbjct: 382 RISAGRLRVERRPVPAVEMLKEAADVFDPVVAEAALDFTRTFDDDAPLVMADRHRVGQVL 441

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            NL   A    PRGG V+++ Q   +    +++  G     PE   ++ +
Sbjct: 442 SNLLGNAVRFTPRGGSVSLTAQRQDDMLRIAVRDTGPGV-APEDVPRLFE 490


>gi|26989125|ref|NP_744550.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida KT2440]
 gi|24983959|gb|AAN68014.1|AE016434_5 sensor histidine kinase, putative [Pseudomonas putida KT2440]
          Length = 428

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 27/197 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ-LIRLSSMSAIIRLKFMRL 69
           LL + I HD+ +PI  +   +E++DE       G + + M+ L+R     A         
Sbjct: 228 LLAA-ISHDLQTPITRMKLRVEVMDEGVERDKFGSDLDEMEHLVREGVAYARS------- 279

Query: 70  AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
               +      + L   ++ ++ D+     +V+   + + +  +R  A  ++L+NL    
Sbjct: 280 -MDSSTEATCRVNLDAFLDSLVFDYQDSGAQVERHGSSDTLLETRPHALRRVLVNLV--- 335

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDI 181
             +L   G   + V    +  I  +  NG      E    +     V+G+   +     +
Sbjct: 336 DNALKFAGAAELQVSREGSTTIIRVLDNGPGIPVDELDEVLKPFYRVEGSRNRSTGGTGL 395

Query: 182 QFYYVILLAHENKIRLL 198
                  L      RL 
Sbjct: 396 GLAIAHQLIRAMGGRLT 412


>gi|237800710|ref|ZP_04589171.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331023569|gb|EGI03626.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 555

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 17/144 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+           L   I L   SA     L    LAF    S
Sbjct: 186 IAHDFNNMLTGIIGSLELIRRRVARGRTEDLDSLIDLGVTSANRAAALTHRLLAFSRRQS 245

Query: 77  VD-------SLIGLGD--IEQVIEDFIAVDKRVQVS-WTGEKIDLSRERAKILLNLFMVA 126
           +D        L+   D  +++ + + I +  R+    WT E      +    LLNL + A
Sbjct: 246 LDSKPVEMNQLVDSMDELLQRSVNESIHLQLRLANDLWTAEAD--PNQLENALLNLVLNA 303

Query: 127 HASLPRGGKVTISVQDSKNENIFS 150
             ++P GG + +   + + +  F+
Sbjct: 304 RDAMPDGGTLVVETFNQQLDKSFT 327


>gi|220913623|ref|YP_002488932.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219860501|gb|ACL40843.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 553

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 17/211 (8%)

Query: 22  ICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKF----MRLAFGYTGS 76
           + H++ +P+ +I   L + +DE G++ E+   + ++  +A   L      + +A G    
Sbjct: 331 VSHELRTPLTSILGYLSIAMDEEGLDPELEHCLEVAKRNAERLLNLVADLLTIASGTLTV 390

Query: 77  VDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHAS 129
                 L ++     D     A    V +S   E     R       + + NL   A   
Sbjct: 391 RPRQADLAEVAAQSVDAAQPRAASGGVTLSLETEGPAPGRFDPDRLGQAIDNLVSNAIKY 450

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFY 184
            PRGG VT+ V+      +  +   G      +                S I    +   
Sbjct: 451 TPRGGVVTVRVRTEDGRLVCEVADTGVGMTDQDLANAFTRFFRTATAHSSAIPGAGLGLA 510

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   ++  +            +  L +
Sbjct: 511 ITRSIIENHRGSVTLASSHGEGTTATLTLPE 541


>gi|171910825|ref|ZP_02926295.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 772

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 38/194 (19%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRLK----FMRLAFGYT 74
           I HD+ + +  I  S+ LL      +E   V+ ++  S+      +K    F R     T
Sbjct: 408 IAHDLNNVLTPIVMSITLLRAGETSEEKLAVLDMVEKSANRGAQLIKQVLTFARGVESRT 467

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVAHAS 129
             V   + L ++E++  +      +++V      W         +  ++LLNL + A  +
Sbjct: 468 VVVQLRLLLYEVEKICSETFLKSIQIRVKSAPDLWPVLGD--PTQLHQVLLNLCVNARDA 525

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           +  GG +T+                 +     E +                    YV+L 
Sbjct: 526 MHHGGTLTLQA---------------DNVVLDEHYAATSVEAKPGP---------YVVLQ 561

Query: 190 AHENKIRLLPEIID 203
             +    + PE+ID
Sbjct: 562 VSDTGAGMSPEVID 575


>gi|114571289|ref|YP_757969.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341751|gb|ABI67031.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 543

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFGYT 74
           + S + HD  + + AI+ S  LL       +DE+M   I  S   A   +  + + F  T
Sbjct: 160 MASSVAHDFANILTAINASARLLRNSNTSPKDELMFDRIVTSCRQANDLVDDL-VTFDAT 218

Query: 75  GSVDSL-IG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128
              ++  I   + D+ +++ +  +   R++++ + E++         A+++ NL   A  
Sbjct: 219 PVREARAIDEIVRDVAEMMSNQFSAPYRLELAASDERLVCETDPTLFARLVANLLKNARE 278

Query: 129 SLPRGGKVTIS 139
           +L  GG VT+ 
Sbjct: 279 ALGPGGTVTVR 289


>gi|66044363|ref|YP_234204.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a]
 gi|63255070|gb|AAY36166.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 483

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 82/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 281 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 331

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        + RV      +     +  A  + + NL 
Sbjct: 332 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 389

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D  +   F L ++      PE+  + V       +  +  Q 
Sbjct: 390 ---DNALKYGDRAHLKVED--DARAFVLHVDDEGPGVPEQRLEHVF-EPHFRLAGNQQQG 443

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 444 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 480


>gi|20141027|sp|Q9APE0|ZRAS_KLEOX RecName: Full=Sensor protein zraS
 gi|12584124|gb|AAG59806.1|AF305914_1 HydH [Klebsiella oxytoca]
          Length = 462

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 24/221 (10%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA-------I 61
            LVAL  L + + H+I +P+ +I   L     +    + E  QL  + +  A        
Sbjct: 237 KLVALGHLAAGVAHEIRNPLSSIK-GLAKYFAERTPADGEAHQLALVMAREADRLNRVVS 295

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL-----SR 113
             L+ +R            + L ++       ++ D     + +++T +           
Sbjct: 296 ELLELVR----PAHLKYQSVDLNEVITHSLQLVSQDAASRAISLTFTAQPALCRIQADPD 351

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              ++LLNL++ A  ++ R G +T++V++  +  +     +       E+   I      
Sbjct: 352 RLKQVLLNLYLNAVHAIGREGVITVAVRECGDGRVKVSVADSGKGMTAEQLQAIFTPYFS 411

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 412 TKADGTGLGLAVVQNIVEQHGGTIDAESAPGKGALFTFYLP 452


>gi|22127155|ref|NP_670578.1| sensory histidine kinase CreC [Yersinia pestis KIM 10]
 gi|45443326|ref|NP_994865.1| sensory histidine kinase CreC [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597481|ref|YP_071672.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis IP
           32953]
 gi|108806371|ref|YP_650287.1| sensory histidine kinase CreC [Yersinia pestis Antiqua]
 gi|108813254|ref|YP_649021.1| sensory histidine kinase CreC [Yersinia pestis Nepal516]
 gi|145597927|ref|YP_001162003.1| sensory histidine kinase CreC [Yersinia pestis Pestoides F]
 gi|150260094|ref|ZP_01916822.1| putative histidine kinase sensor [Yersinia pestis CA88-4125]
 gi|162418816|ref|YP_001608151.1| sensory histidine kinase CreC [Yersinia pestis Angola]
 gi|165925117|ref|ZP_02220949.1| sensor protein CreC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937318|ref|ZP_02225882.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010393|ref|ZP_02231291.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212790|ref|ZP_02238825.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167399736|ref|ZP_02305254.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167419041|ref|ZP_02310794.1| sensor protein CreC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425420|ref|ZP_02317173.1| sensor protein CreC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167467690|ref|ZP_02332394.1| sensor protein CreC [Yersinia pestis FV-1]
 gi|218928068|ref|YP_002345943.1| sensory histidine kinase CreC [Yersinia pestis CO92]
 gi|229840804|ref|ZP_04460963.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842637|ref|ZP_04462792.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229903710|ref|ZP_04518823.1| putative histidine kinase sensor [Yersinia pestis Nepal516]
 gi|270487489|ref|ZP_06204563.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294502938|ref|YP_003567000.1| putative histidine kinase sensor [Yersinia pestis Z176003]
 gi|21960217|gb|AAM86829.1|AE013929_2 catabolite repression sensor kinase for PhoB [Yersinia pestis KIM
           10]
 gi|45438195|gb|AAS63742.1| putative histidine kinase sensor [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590763|emb|CAH22408.1| Putative histidine kinase sensor, CreC familly [Yersinia
           pseudotuberculosis IP 32953]
 gi|108776902|gb|ABG19421.1| histidine kinase sensor [Yersinia pestis Nepal516]
 gi|108778284|gb|ABG12342.1| putative histidine kinase sensor [Yersinia pestis Antiqua]
 gi|115346679|emb|CAL19562.1| putative histidine kinase sensor [Yersinia pestis CO92]
 gi|145209623|gb|ABP39030.1| histidine kinase sensor [Yersinia pestis Pestoides F]
 gi|149289502|gb|EDM39579.1| putative histidine kinase sensor [Yersinia pestis CA88-4125]
 gi|162351631|gb|ABX85579.1| sensor protein CreC [Yersinia pestis Angola]
 gi|165914792|gb|EDR33405.1| sensor protein CreC [Yersinia pestis biovar Orientalis str. IP275]
 gi|165923317|gb|EDR40468.1| sensor protein CreC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990879|gb|EDR43180.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206082|gb|EDR50562.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166963035|gb|EDR59056.1| sensor protein CreC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050444|gb|EDR61852.1| sensor protein CreC [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167055820|gb|EDR65604.1| sensor protein CreC [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679480|gb|EEO75583.1| putative histidine kinase sensor [Yersinia pestis Nepal516]
 gi|229690947|gb|EEO83001.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697170|gb|EEO87217.1| putative histidine kinase sensor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|262360973|gb|ACY57694.1| putative histidine kinase sensor [Yersinia pestis D106004]
 gi|270335993|gb|EFA46770.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294353397|gb|ADE63738.1| putative histidine kinase sensor [Yersinia pestis Z176003]
 gi|320014029|gb|ADV97600.1| putative histidine kinase sensor [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 472

 Score = 36.4 bits (83), Expect = 3.0,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 23/153 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ SP+ AI  + ELL E    +   + LI         R++ +         ++S + 
Sbjct: 265 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 322

Query: 83  LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           L                  + + V        K V  +       L    ++ L NL   
Sbjct: 323 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALNNLIDN 379

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           A    P GG++++S +   +  + +++ +G+  
Sbjct: 380 ALDFTPAGGEISVSGERQDDTYLITVEDSGSGI 412


>gi|318607028|emb|CBY28526.1| two-component response regulator CreC [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 230

 Score = 36.0 bits (82), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 25/154 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLK--------FMRLAFGYT 74
           H++ SP+ AI  + ELL E  +     + LI         R++          RL     
Sbjct: 20  HELKSPLAAITGAAELLRESPLPATAQRFLIN--IEQQSARIQQLVDKMLIQARL----E 73

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------KILLNLFM 124
             VD  +   +I  +I+  +   +   VS       +  + A          + L NL  
Sbjct: 74  SRVDVQLSPIEISSIIKQAMGAKEAQAVSRGINLRLIRADSATLTGDGLLLSQALTNLID 133

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            A    P GG+VT+S     +E + +++  G+  
Sbjct: 134 NALDFTPAGGEVTVSGTRQTDEYLITVEDTGSGI 167


>gi|189459479|ref|ZP_03008264.1| hypothetical protein BACCOP_00103 [Bacteroides coprocola DSM 17136]
 gi|189433731|gb|EDV02716.1| hypothetical protein BACCOP_00103 [Bacteroides coprocola DSM 17136]
          Length = 802

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 44/232 (18%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLEL-LDEVGIEDEVM--QLIRLSSMSAII---- 62
            L+ SR      + HD+ SP+ AI  + EL L +   E   +  + IR S+         
Sbjct: 326 ELIKSRQNIMQTVTHDLRSPLTAIRGNAELILKDGNREATALHAEHIRQSAERMGALMEN 385

Query: 63  --------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                         R+K  RLA G   ++++       E+ +E    V+        G++
Sbjct: 386 LLDYYRIDNGKETVRVKPFRLA-GVAETLETEFAARMEEKRLE--FRVNNAADEVVMGDR 442

Query: 109 IDLSRERAKILLNLF------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             + R  + +L N         V   +L  GGK T++V+D+               +  +
Sbjct: 443 NLILRIGSNLLSNALKFTERGGVTLTALYAGGKFTLAVEDTGGGID-----KDKREQIFK 497

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F ++ +    +T D   +    V  LA   +  +  E I +     S +L 
Sbjct: 498 PFERLSN---AATQDGFGLGLSIVKSLAELMEGSISVENIRNTGSRFSVVLP 546


>gi|288919106|ref|ZP_06413446.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288349546|gb|EFC83783.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 778

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 23/176 (13%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
           LDE  + D  +  +R +S  A       L F R     +      + L D+ + +E  + 
Sbjct: 298 LDEGVLRD--LAAVREASGRAAGLTSQLLAFSR----TSDVRPGPVDLNDLVRGLEGMLR 351

Query: 96  VDKRVQVSWTGEKIDLSRERAKI--------LLNLFMVAHASLPRGGK--VTISVQDSKN 145
              R  +              +I        L+NL + +  ++P GG+  + + + D   
Sbjct: 352 RLIREDIE-LVVMPAHRAAMVRIDRGKLEQVLVNLVVNSRDAMPEGGRLFIRVDIADDTT 410

Query: 146 ENIFSLKINGNLARFPEKFTQIVDG-NVESTIDSHDIQFYY-VILLAHENKIRLLP 199
             +    + G LAR   + T    G  +   + +   + +Y    L     + L  
Sbjct: 411 PELGFSVLRGALARPFVRLTVADTGHGMTDDVRARIFEPFYTTKALGRGTGLGLAT 466


>gi|218289376|ref|ZP_03493610.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240482|gb|EED07663.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 527

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 23/214 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRL-KFMRLAFGY---- 73
           H++ +P+ A+   LE+L + G        E +Q +   +      + + +RLA       
Sbjct: 305 HELRTPLTALSGYLEVLQKGGDFTDEEWREALQQMHGEARRLAGLVDQMLRLARAEDVRA 364

Query: 74  --TGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVA 126
              G     + LG +   ++     +   + +     G+    +   A  ++L NL   A
Sbjct: 365 SWAGDKRERVRLGTLVMSLDALWRGLCGSRELTYRIEGDPAVFADPDALKQVLFNLVQNA 424

Query: 127 HASLPR-GGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV--DGNVESTIDSHD 180
               P  GG++ ISV     E   ++  NG        P  F +    D           
Sbjct: 425 VQHTPEEGGEIAISVWTDGCEAKLAVADNGTGIPKVHQPHVFERFYRVDEARSRAKGGAG 484

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   +  R+  E       V +  L 
Sbjct: 485 LGLAICKAIVEAHGGRIACESEPGEGAVFTVTLP 518


>gi|158523273|ref|YP_001531143.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512099|gb|ABW69066.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 639

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 18  LCSRICHDIISPIGAI-HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFGYT 74
           L S I HD  + +  I  N+   L ++  ED++  ++R    +A       R  LAF   
Sbjct: 272 LASGIAHDFNNLLTTIIGNADFALMDLKPEDDLHDVVREIKDAADRAANLTRQLLAFSRR 331

Query: 75  GSVDSL-----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVA 126
            S           L D E++I   I  +  ++++   +   +     +  ++++NL + A
Sbjct: 332 QSCHPEELSLNTKLQDTEKMIRRLIGENIELELALASDAARVEMDPGQLDQVIMNLVVNA 391

Query: 127 HASLPRGGKVTI 138
             ++P GGK+TI
Sbjct: 392 RDAMPDGGKLTI 403


>gi|310817906|ref|YP_003950264.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390978|gb|ADO68437.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 807

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 33/220 (15%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVM---QLIRLSSMSAIIRLK----F--MRLAF 71
           + HD+ +P+GAI  +  LL    G+ +  +   Q I  S   A   ++    F   RL  
Sbjct: 591 VSHDLRNPLGAITMAAGLLQASPGLSERQLKAAQRIASSCERATRLIRDLLDFTQARLGT 650

Query: 72  GYTGSVDSLIGLGDIEQVIED--FIAVDKRVQV---------SWTGEKIDLSRERAKILL 120
           G        + L D+ + + D   +    R             W  ++I      A++L 
Sbjct: 651 GIP-LNRRPMDLHDVTRHVVDEVLLTHPGRHVQVESSGEGWGEWDPDRI------AQVLT 703

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTID 177
           NL   A A  P    V +            +   G        P  F  +  G       
Sbjct: 704 NLLGNALAYSPAHTPVRVRTLGEPEGARLEVHNQGTPIPAELLPRLFEPLTRGAPSENQP 763

Query: 178 SHDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  I    Y V  +   +   +     +      +  L +
Sbjct: 764 NRSIGLGLYIVREILAGHGGTIEVASNEAAGTTFTVRLPR 803


>gi|302341478|ref|YP_003806007.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301638091|gb|ADK83413.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 482

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 27/173 (15%)

Query: 18  LCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQL---IRLSSMSAII----RLKF 66
           L S + H++ +P+  I  S    LE LD   +++   +L   I      A       L+F
Sbjct: 265 LTSGVAHELNNPLNNISTSTQILLEELDSPDLQEYHRELLAAIEQQVAKAKDIVGSLLEF 324

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKI---DLSRER-AK 117
            R         +      D+  VI++ +      +  +VQV          D+ +    +
Sbjct: 325 AR-------QREFEPSRHDLRAVIDETLKLIKGEIPAQVQVEVDAPAGIVMDMDKAHIVQ 377

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            L+NL + A  ++   G+++I  + ++ E +     +      PE   +I D 
Sbjct: 378 ALINLIINAIQAMDGAGRLSILARLAEGETVRLELTDSGSGIAPEVLPRIFDP 430


>gi|260430627|ref|ZP_05784600.1| sensor histidine kinase [Citreicella sp. SE45]
 gi|260418656|gb|EEX11913.1| sensor histidine kinase [Citreicella sp. SE45]
          Length = 457

 Score = 36.0 bits (82), Expect = 3.1,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 43/224 (19%)

Query: 24  HDIISPIG--------AIHN-------SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           HD+ SP+G        A+          LE L +   E E M++I  S       L+  R
Sbjct: 244 HDLKSPLGRAYLSLGKAMEKVEAGEDPGLE-LADTQDELEAMRVIFDSY------LQLSR 296

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKIL---- 119
           +  G  G + + + L  +   + +  A       + +  +    +    R  A++L    
Sbjct: 297 IEAGGDGLLTADVDLAALAGDLAETFALIAEDAGQTLTFTVEAGQDYGIRGDAQMLQQMV 356

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVE 173
           +NL   A    P G ++T  +  S    +F++   G       + R  E F ++   +  
Sbjct: 357 VNLLQNAVTHGPEGNRITAGLGRSDGRVLFTVADCGPGIPQASMQRVFEPFHRL---DPS 413

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV---LSALLE 214
            +     +    V  +A  +   +         +V   L AL+ 
Sbjct: 414 RSKPGSGLGLALVRAIAERHNGAVTLRNAKPGLIVEVSLPALVP 457


>gi|330953860|gb|EGH54120.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae Cit 7]
          Length = 685

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 319 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 376

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I V+    V      ID  +     LLNL + 
Sbjct: 377 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 435

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++PRGG++TI   +   +E     +            +    G     I+     F+
Sbjct: 436 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 495

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 496 TTKPLGQGTGLGLS 509


>gi|298292579|ref|YP_003694518.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296929090|gb|ADH89899.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 769

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 19/140 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + +  +  +LEL  +    D  +Q +  +++ A  R        L F R     
Sbjct: 394 IAHDFNNLLAVVLGNLELAAKRAPSDPRLQALLGNAIQAAQRGAALTQRMLAFAR----R 449

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKI------LLNLFMVA 126
                  + + D+   + + +       V       + L R R         LLNL + A
Sbjct: 450 QDLKPEPVDVPDLVLGMAELLRRSIGPSVRIETHFPLGLPRARVDANQLELALLNLAVNA 509

Query: 127 HASLPRGGKVTISVQDSKNE 146
             ++P GG +TI+ ++   +
Sbjct: 510 RDAMPEGGTITIAAREETVD 529


>gi|222083200|ref|YP_002542603.1| bacteriophytochrome protein [Agrobacterium vitis S4]
 gi|221738580|gb|ACM39418.1| bacteriophytochrome protein [Agrobacterium vitis S4]
          Length = 378

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLSSMSAIIRLKFMRLAFGYT 74
           + H++ +P+ A+   L LL +V  E++  ++       I   S      L   R+  G  
Sbjct: 160 LAHELRNPLAALQGGLSLLKKVNGEEQTAKIGKLMQEQITHLSHLVDDLLDVSRITQGKI 219

Query: 75  GSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126
               +   L D  +   D       A    + V       D   +  +I   L NL   A
Sbjct: 220 VLRKAFFDLRDAVESAVDMTRPAIDAKGHNLVVKLPERSCDAMADNVRITQCLANLLNNA 279

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKING 155
               P GG++ + + +       ++  NG
Sbjct: 280 AKYTPDGGQIYVELVEDVESFRLTVSDNG 308


>gi|94264019|ref|ZP_01287820.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455612|gb|EAT05797.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 555

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL- 55
           K       +  L A+  L + + H++ +P+ +I     LL    +    + E +++I   
Sbjct: 325 KKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAEQ 384

Query: 56  ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKI 109
              SS      L F R +  +TG       L  I +     +  D   +R+++    + +
Sbjct: 385 TRRSSTIIKALLSFARNS-NHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443

Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   E  ++++NL +    ++   G++ +     +   +  ++ NG     PE  +
Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502

Query: 166 QIVDG 170
           +I D 
Sbjct: 503 RIFDP 507


>gi|118578878|ref|YP_900128.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter propionicus DSM 2379]
 gi|118501588|gb|ABK98070.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter propionicus DSM 2379]
          Length = 412

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 81/215 (37%), Gaps = 24/215 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-----AIIRLK 65
            L A+  L + + HDI +P+ +I    +L+ +  I+ +  + +           AIIR K
Sbjct: 189 KLAAMGYLAAGMAHDIRNPLNSISLFTQLMRQNSIDPDQEEYLGKIIKEIERIDAIIR-K 247

Query: 66  FMRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERA-- 116
            + +    + S +    +          +V    I   K R++  +      +  + A  
Sbjct: 248 LLNM---SSRSRNVTSDVRIDRVIDTALEVFAPQIETGKIRLERRYELTPPPIKADAAEL 304

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVES 174
            ++  NLF+ A   +P GG++ + +   ++  +  ++ +G     PE    +I D    +
Sbjct: 305 EQVFTNLFLNALDEMPGGGRLGVGIAVEEDMVVVRVEDSGKG--IPEHALPRIFDPFFTT 362

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +    V  +A      +  E       V+
Sbjct: 363 KPRGTGVGLPVVKRIARLCGGSVRVERSSREGTVV 397


>gi|307326290|ref|ZP_07605486.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
 gi|306887953|gb|EFN18943.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
          Length = 488

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI 167
           +    A++L NL   A    P G +V + +   +     +++ +G        P  F + 
Sbjct: 371 VPARLARLLTNLLDNAAKFSPPGAEVEVRLTSGEPAIDLTVRDHGPGIAAEDLPYVFDRF 430

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +       +A  +   L  E  D    +    + +
Sbjct: 431 YRSRQARALPGSGLGLAMARQIARAHGSALSAEAADGGGALFRLRIPR 478


>gi|270264907|ref|ZP_06193171.1| sensory histidine kinase CreC [Serratia odorifera 4Rx13]
 gi|270041205|gb|EFA14305.1| sensory histidine kinase CreC [Serratia odorifera 4Rx13]
          Length = 472

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 30/213 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------------ 65
           H++ SP+ AI  + ELL E+       + +         R++                  
Sbjct: 265 HELKSPLAAIRGAAELLQELPPPATARRFLTN-IEQQSARIQQLVDKLLVQARLESRPGL 323

Query: 66  -FMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
               LA      V   +   + +       + VD    ++ TG+ + +S    + L NL 
Sbjct: 324 ELAPLAM--ATLVSQAVAGKEAQAAQRGVVLQVDALEAITLTGDGLLIS----QALTNLL 377

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHD 180
             A    P GG V++  +  ++  + ++  NG+        + F +           S  
Sbjct: 378 DNALDFTPPGGAVSVCGERRESHYLITVSDNGSGIPDYALDKVFERFYSLARADKPKSSG 437

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +V  +A  ++  +       H VV    L
Sbjct: 438 LGLNFVQEVARLHRGGIQLYNRQPHGVVAVFTL 470


>gi|260432501|ref|ZP_05786472.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416329|gb|EEX09588.1| sensor histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 460

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 17/162 (10%)

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL----SRERAKI 118
           LAFG        + +  +  V  D +        D R+++     +  +      +  ++
Sbjct: 296 LAFGRAEEPAPTLNMVRLRDVAADVVGSEALAVDDARIEIRNEVPEDMVIRADPEQMFRV 355

Query: 119 LLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           L+NL   A  +L      G++T+S ++  +  +  ++  G     P +  + +    +  
Sbjct: 356 LMNLVRNARQALVASGQPGQITVSAREDDDAWLIDVEDTGPG--LPPRAQENLFTPFQGG 413

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      +       L   +   L+              L +
Sbjct: 414 VRKGGSGLGLAISQELVRGHGGELVLRRTGPEGTAFEIRLPR 455


>gi|186896601|ref|YP_001873713.1| sensory histidine kinase CreC [Yersinia pseudotuberculosis PB1/+]
 gi|186699627|gb|ACC90256.1| integral membrane sensor signal transduction histidine kinase
           [Yersinia pseudotuberculosis PB1/+]
          Length = 472

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 23/153 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ SP+ AI  + ELL E    +   + LI         R++ +         ++S + 
Sbjct: 265 HELKSPLAAISGAAELLRESPPPETAQRFLIN--IEQQSARIQQLVDKMLVQARLESRVD 322

Query: 83  LG-----------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           L                  + + V        K V  +       L    ++ L NL   
Sbjct: 323 LQLSPLEISHILKQSFSAKEAQAVSRGVTLRLKSVDNAMLIGDGLL---LSQALNNLIDN 379

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           A    P GG++++S +   +  + +++ +G+  
Sbjct: 380 ALDFTPAGGEISVSGERQDDTYLITVEDSGSGI 412


>gi|330876582|gb|EGH10731.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 660

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            LLNL + A  ++PRGG++TI   +   +E     +            +    G     I
Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQTRDLSPGQYLSLCVSDTGTGMSPEVI 462

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
           +     F+    L     + L 
Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484


>gi|239908420|ref|YP_002955162.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239798287|dbj|BAH77276.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 459

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRL 69
           + + I HD+  P+  I + LE+      E E         +  I     +    L   + 
Sbjct: 240 VSNNIAHDLRGPLNRIRSGLEITLSRPQEPEACRQALERAITEIDGLLQTFNALLTIAQA 299

Query: 70  AFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
             G      + I L     D  ++ E                ++ +   R   ++ L NL
Sbjct: 300 ESGARRQDFTDIDLTSLAADAAELYEPVAEEAGLSLEVDLAPQVTVPGNRHLLSQALANL 359

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              A    P GG+VT+S+         ++   G     PE    +++
Sbjct: 360 LDNAVKYTPDGGRVTLSLTSGPAGPELTVADTGPGI-PPEHREFVLE 405


>gi|237729298|ref|ZP_04559779.1| sensory histidine kinase CreC [Citrobacter sp. 30_2]
 gi|226909027|gb|EEH94945.1| sensory histidine kinase CreC [Citrobacter sp. 30_2]
          Length = 474

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 73/192 (38%), Gaps = 19/192 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78
           H++ SP+ AI  + E+L E G    V+     + ++   R++      +R A       D
Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPNVVARFTDNILTQNARMQALVETLLRQA-RLENRQD 322

Query: 79  SLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERA---KILLNLFMVAHAS 129
             + + +++ +              K + ++     + ++ + A   + L NL   A   
Sbjct: 323 ITLTVVEVDTLFAQLKEARSVQLAAKNITLTILPSSLSVAADPALLEQALGNLLDNAIDF 382

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYV 186
            P+GG +T+S    +      +  +G+       P  F +      E+   S  +   +V
Sbjct: 383 TPQGGTITLSAHQQEELVTLQVTDSGSGIPDFALPRIFERFYSLPRENGHKSSGLGLAFV 442

Query: 187 ILLAHENKIRLL 198
             +A  ++  + 
Sbjct: 443 SEVARLHEGTVT 454


>gi|197104163|ref|YP_002129540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196477583|gb|ACG77111.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 631

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 22/136 (16%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLK-FMRLAFGYT 74
           HD  + + AI  SLEL  +    D            L      S   RL  F R     T
Sbjct: 268 HDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAAQRGASLTQRLLGFSR----RT 323

Query: 75  GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRE------RAKILLNLFMVA 126
            S  +++ +      + D ++      V+V W                    +LNL + A
Sbjct: 324 DSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSVEPDQLEV-AILNLAINA 382

Query: 127 HASLPRGGKVTISVQD 142
             ++P GG +TI+ ++
Sbjct: 383 RDAMPDGGVITIAARN 398


>gi|83955852|ref|ZP_00964394.1| sensor histidine kinase [Sulfitobacter sp. NAS-14.1]
 gi|83839857|gb|EAP79034.1| sensor histidine kinase [Sulfitobacter sp. NAS-14.1]
          Length = 480

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 22/222 (9%)

Query: 1   MAKNICFNLSS--MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M   +   +S     L AL      HD+ SP+ A+    E++D+      ++        
Sbjct: 246 MQDRLTRFVSDRTQMLAALA-----HDLRSPLTALRVRAEMVDDEDTRTSLVASSEEMQR 300

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F +            +   D+  +I        +V                + 
Sbjct: 301 MVDATLDFAK-----GVGQHEEVQSVDLHDLITGMGLDKVQVTSQGPLIVTVKPSAMGRA 355

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNV 172
           L NL      ++  G +  +S Q   +E + ++   G      +       + ++     
Sbjct: 356 LRNLI---ENAIRYGSEARVSWQRMGSEVVVAIDDQGPGIPDNQLEAVFGPYVRLETSRS 412

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + T   H +       +  E+   +  +   D  +     L 
Sbjct: 413 QDT-GGHGLGLSIARSIILEHGGSIELKNRTDGGLRAEITLP 453


>gi|182413664|ref|YP_001818730.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840878|gb|ACB75130.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 785

 Score = 36.0 bits (82), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPR 132
           +V++   + D+ +++   +     VQ++   E      ++A++   LLNL + A  ++P 
Sbjct: 487 AVEANALVTDLVKMLRRVLGEHIEVQLALLPEPCTFVADKAQLEQVLLNLCVNARDAMPS 546

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           GG++ I ++        +     + A  PE 
Sbjct: 547 GGRLRIELKQ-------TTLAAADTASLPEL 570


>gi|168703766|ref|ZP_02736043.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 483

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 27/165 (16%)

Query: 14  LVA--LLCSRICHDIISPIGAI----HNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-- 65
           L A   L + + H+I +P+ +I       LE      +  E +++I          L+  
Sbjct: 261 LAAVGQLAAGVGHEIRNPLTSIKMLVQTGLEG-AAPPLSAEDLRIIESEIRRMERSLQTF 319

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116
             F R              LG + + +   +    R +      +++L            
Sbjct: 320 LEFAR----PPKLERRPTDLGAVLESVLGLVR--GRAEQQRVATRLELPGPPVVLTADAG 373

Query: 117 ---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              ++ +NL + A   +P GG +T+  + +       +   G   
Sbjct: 374 QLQQVFVNLVLNALDVMPTGGALTVRARAAGGGIEVEVSDTGPGI 418


>gi|94267327|ref|ZP_01290846.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93452049|gb|EAT02741.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 555

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL- 55
           K       +  L A+  L + + H++ +P+ +I     LL    +    + E +++I   
Sbjct: 325 KKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAEQ 384

Query: 56  ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKI 109
              SS      L F R +  +TG       L  I +     +  D   +R+++    + +
Sbjct: 385 TRRSSTIIKALLSFARNS-NHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443

Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   E  ++++NL +    ++   G++ +     +   +  ++ NG     PE  +
Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502

Query: 166 QIVDG 170
           +I D 
Sbjct: 503 RIFDP 507


>gi|148256774|ref|YP_001241359.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1]
 gi|146408947|gb|ABQ37453.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1]
          Length = 892

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 15/157 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           M++V  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 505 MEMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 564

Query: 69  LAFGY-TGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118
           LAF         ++ LGD    +   +     ++V++        W  +      E+   
Sbjct: 565 LAFSRRQTLRPQVLDLGDALSDLTMLLRRLIGEKVKLDLVHGRDLWPVKVDVSQFEQV-- 622

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ++NL + A  ++P GGK+++   +   +        G
Sbjct: 623 VVNLAVNARDAMPDGGKLSVRTANVSADEAAQGAYKG 659


>gi|149923648|ref|ZP_01912044.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149815463|gb|EDM75000.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 361

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 14/216 (6%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIR---LSSMSAIIRLKF 66
              AL  + + I HD  + +  I+   + L    + + +   LI     +        + 
Sbjct: 10  KFAALGRMSAGIAHDFNNLLTTINLGAQELAFPDLSEADREALIAAIVQACERGAGITRQ 69

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGEKIDLS-----RERAKIL 119
           ++ +     S   L+ LG++               V+V        L       +  ++L
Sbjct: 70  LQASSAAQLSRPELVDLGELVAKDLGVWRTLAGAEVRVEGVLPDEALPVRVDPAQFHRVL 129

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           LNL + A  ++   G++T+S        +F    +      P    ++ +    +     
Sbjct: 130 LNLVVNACQAMGESGELTLSAGRRGPGEVFVSVADTGGGIPPSVAERMFEPFFTTRETGT 189

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +  +    +    +     + + +L +
Sbjct: 190 GLGLAVVRGVVVQAGGSIDY-ALAGGGTIFTVVLPE 224


>gi|121533921|ref|ZP_01665747.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121307432|gb|EAX48348.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 514

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 14/217 (6%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           +  L A+  + + + H+I +P+ A+    +LL E     E  +   +         + + 
Sbjct: 290 AERLAAIGEVAAGLAHEIRNPLMAVKGFAQLLKEDITPAEQAEYSDIIVRETERLDRLIE 349

Query: 69  LAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQ--------VSWTGEKIDLSRERAK- 117
               +     + +   D+++V+E    +   KR++        +      + +  E+ K 
Sbjct: 350 QLLCFARPAATQVAPTDVKEVVESTLLLVETKRLRSHIEIIRDLDRPLPLVLVDSEQLKQ 409

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           +LLN+ + A  ++ + G + +S   + +    ++   G     PE  +++ D    +  +
Sbjct: 410 VLLNIILNAIQAIEQKGVIRVSANQAADGLHLTVADTGCGI-APENMSKLFDPFFTTKEN 468

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L      R+L E         + +L 
Sbjct: 469 GTGLGLAVAHRLVENWNGRILVESTPGQGSAFTLVLP 505


>gi|117925635|ref|YP_866252.1| periplasmic sensor signal transduction histidine kinase
           [Magnetococcus sp. MC-1]
 gi|117609391|gb|ABK44846.1| periplasmic sensor signal transduction histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 717

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 49/153 (32%), Gaps = 15/153 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL + + HD+ +P+  +    E++++  +  +++  +      A   L F+R        
Sbjct: 507 LLGA-LSHDLKTPMTRLRLRAEMMEDETLRQKILTDLAEMESMAACSLDFIR-----GME 560

Query: 77  VDSLIGLGDIEQVIEDFIAVDK------RVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
                   D+  ++E   A         ++            +   + L NL      + 
Sbjct: 561 SGESYETIDLNSMLEQIFAEHSDMGHEVKILCDAMPPVTVKPKSLKRCLDNLI---KNAC 617

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             G +  +     +N     +  +G      E 
Sbjct: 618 NYGKRAYVRAGTGRNGLHIVVADDGPGIPEEEL 650


>gi|332708955|ref|ZP_08428926.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
 gi|332352497|gb|EGJ32066.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
          Length = 701

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74
           I HD+ + +  I  S +LL     +   +QL++    +A          L F R   G  
Sbjct: 342 IAHDLNNLLAPILMSAQLLQLKISDQRHLQLLKTVENNARRGAGLVKQVLSFARGITGQR 401

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLP 131
             +     + +I  +I +       +          +S +  ++   L+NL + A  ++ 
Sbjct: 402 TVLQVRHLIREIRHIILETFPRSIELSTDIDPNLWSVSGDATQLHQVLMNLCINARDAMV 461

Query: 132 RGGKVTISVQD 142
            GG +T+S Q+
Sbjct: 462 DGGTLTLSAQN 472


>gi|330957563|gb|EGH57823.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 692

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 13/135 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+ +   +  V  +     +  S++     L    LAF    +
Sbjct: 319 IAHDFNNLLAGISGSLELITKRLSQGRVGDVDRYVSVAQSAVRRAASLTHRLLAFSRRQA 378

Query: 77  VDSLIG-----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128
           +   +      +GD+E++I   +  +  ++V    +      + A++   LLNL + A  
Sbjct: 379 LSPRVTDVNALIGDMEELIARTVGPEIDIKVVAQPDLWPALIDHAQLESSLLNLCLNARD 438

Query: 129 SLPRGGKVTISVQDS 143
           ++P GG++ I   ++
Sbjct: 439 AMPNGGRIIIETANA 453


>gi|170690465|ref|ZP_02881632.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia graminis C4D1M]
 gi|170144900|gb|EDT13061.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia graminis C4D1M]
          Length = 374

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 17/216 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67
            +L + + HD+ +P+GA+  S E L     + +    +     ++ +R        L   
Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADQQS-ATVAARVKNSSLRMARMVDQLLNLA 206

Query: 68  RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125
           RL  G        I L  +   VI++F + +   ++ +T            ++      +
Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKRILFTSRGNTAGAWDTDLVWQAVSNL 266

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV------DGNVESTIDSH 179
              +L  G    ++V+       F      N    P +    +      + N   + +  
Sbjct: 267 VSNALHHGAAGDVNVEVDGEAADFVRLKVANRGVIPPEVFPHLFKAFGPNNNGSRSREGL 326

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  + V  +A  +   +  +  +    V +  L +
Sbjct: 327 GLGLHIVHEIARMHGGTVDVKSDESGGTVFTIELPR 362


>gi|163741291|ref|ZP_02148683.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161385644|gb|EDQ10021.1| sensor histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 439

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 68/202 (33%), Gaps = 25/202 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-FMRLAFGYT 74
            L+ S + HD+ +P+  +   L +LDE   E      +R         L  F+  + G +
Sbjct: 236 TLMLSGVSHDLRTPLTRMKLGLSMLDEEDAEP-----LRQDVDEMQALLDAFLDFSRGVS 290

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA--KILLNLFMVAHASL 130
            S    +    +  ++ D      +  +    +G+   + R  A  + + NL      ++
Sbjct: 291 TSEPEEVDPYVMITLLVDGWRRQGKDVMLGEMSGKGKVMLRGSAIRRAVQNLI---SNAV 347

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-------- 182
             G +  +SV  ++      ++ +G      +   +       + +D    Q        
Sbjct: 348 RYGTRARVSVAMTEKFLRIRVEDDGPGIAEAD---RAEATRPFTRLDPARNQDLGSGVGL 404

Query: 183 -FYYVILLAHENKIRLLPEIID 203
               V  +A  +   L  E   
Sbjct: 405 GLAIVTDIARAHGGTLRLEQSA 426


>gi|162455246|ref|YP_001617613.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161165828|emb|CAN97133.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 491

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S + H++ +P+  +    +++     ++E ++  R+ +  A    K +R    +    
Sbjct: 262 LASGLAHELGTPLNVVGGRAKMIARGLPQEEAVESARIIAEQADRMTKIIRQLLDFARRR 321

Query: 78  DSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA------KILLNLFMV 125
            +     D+  +    +A        + V +         +R         ++L NL M 
Sbjct: 322 VAQKTPADLAHIARQTLALLEPLARKRSVTLRLDEASGGAARAEVDAGQMQQVLTNLIMN 381

Query: 126 AHASLPRGGKVTISVQDSKNEN 147
              S+ RGG++T+ V+ ++   
Sbjct: 382 GMQSMKRGGELTVRVERARARP 403


>gi|316932839|ref|YP_004107821.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315600553|gb|ADU43088.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 881

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           MD +  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 494 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 553

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID-LSRERA----KILL 120
           LAF         ++ LG+    I+  +     +++ +     +    ++       ++++
Sbjct: 554 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKIALEMQHGRDLWRTKADVSQFEQVIV 613

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           NL + A  ++P GGK+TI   +        L  NG
Sbjct: 614 NLAVNARDAMPDGGKLTIRTANVTASAAAQLGHNG 648


>gi|295688386|ref|YP_003592079.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
 gi|295430289|gb|ADG09461.1| integral membrane sensor signal transduction histidine kinase
           [Caulobacter segnis ATCC 21756]
          Length = 448

 Score = 36.0 bits (82), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 24/207 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ + +  +    E + +     +  + +   S      L F R   G       + 
Sbjct: 246 IAHDLRTYLTRLTLRAEFIADPEQRTKATRDLAEMSQLLDDTLLFARQEAGRGEVAGPVE 305

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139
              ++E ++     + + V +S       L    A  ++L NL      +L  GG V + 
Sbjct: 306 VRRELEGLVALRAEMGQAVTLSAGAPVTALVSPVALRRMLDNLV---DNALAYGGSVALD 362

Query: 140 VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD------------IQFYYVI 187
            + +  E   ++   G     P+     +    E    S +            +Q     
Sbjct: 363 AEVADGEARIAVLDRGPG--LPDAVLARIAAPFERGEASRNRRTGGAGLGLSIVQA---- 416

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            LA  +  RL+    +   +  + +L 
Sbjct: 417 -LAQAHGGRLVLANREGGGLSATVVLP 442


>gi|330953360|gb|EGH53620.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 674

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        V  L   I L   SA     L    LAF    S
Sbjct: 311 IAHDFNNMLTGIIGSLELIRRRLARGRVEDLNGLIDLGVTSANRAAALTHRLLAFSRRQS 370

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 371 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRLAHDLWTAEAD--PNQLESALLNLVLNA 428

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 429 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 485

Query: 183 FYYV 186
            ++ 
Sbjct: 486 PFFT 489


>gi|313497379|gb|ADR58745.1| Integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida BIRD-1]
          Length = 484

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 38/218 (17%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           + L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K   +
Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
                      + L  + +++ +    D R+ V          +  A  + + NL     
Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182
            ++  G +  + + D     +  +   G           +    +E   + H       Q
Sbjct: 393 NAIKYGERARLRIIDGAEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443

Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            Y + L     +AH +   +    + +  + ++  L +
Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481


>gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 526

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 62/219 (28%), Gaps = 26/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS----MSAIIRLKFMRL 69
           S I H++ +P+  I      L          +  E + +I   +          L   RL
Sbjct: 299 SVISHELKTPVSIIKGYASTLARTDATFSPDMLREGLTVIEEEADRLARQIQDLLDVSRL 358

Query: 70  AFGYT---------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           A G            S+ + +      QV E     + R+         D  R R ++L 
Sbjct: 359 AAGGARLDRCDFALSSLVADVVRSFAAQV-EGHFEFELRLADDMPPIHGDYERLR-QVLS 416

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIV--DGNVEST 175
           NL   A    P GG + I  +      +  +   G      E    F +    D  +   
Sbjct: 417 NLISNAIKYSPEGGTIRIGARAEAERAVVYVADQGIGIAPEEHEQIFQRFYRVDNRLRRQ 476

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  Y    +   +  R+  E            L 
Sbjct: 477 TQGSGLGLYLARAIIEAHGGRIWVESQLGRGARFLFTLP 515


>gi|268317252|ref|YP_003290971.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334786|gb|ACY48583.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 505

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 83  LGDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAK--------ILLNLFMVAHASLPRG 133
           L +   +   +   + R Q +    E         +        +  NL + A  ++P+G
Sbjct: 228 LEECLMLTRPYWYNEPRRQGIDIRVETQLEPVPPVRGIASELRQVFTNLILNAVQAMPQG 287

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGNVESTIDSHDIQFYYVILLAHE 192
           G + I+    K   +  ++++      PE    +I +    +  +   +    V  +  E
Sbjct: 288 GTLRIATDFDKERGVI-VRVSDTGIGMPESVRRRIFEPLFTTKPEGSGMGLAIVAGIVRE 346

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           ++  +  E         +    
Sbjct: 347 HEGSIEVESALGEGTTFTLYFP 368


>gi|258652231|ref|YP_003201387.1| multi-sensor signal transduction histidine kinase [Nakamurella
           multipartita DSM 44233]
 gi|258555456|gb|ACV78398.1| multi-sensor signal transduction histidine kinase [Nakamurella
           multipartita DSM 44233]
          Length = 874

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 55/152 (36%), Gaps = 7/152 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H++    GA+    ELL          QL RL++  A +  +  R+A     +  +++  
Sbjct: 122 HEVAGQAGALTLLAELLGPDQPPTRAEQLRRLAARGAQLAWQAGRVA----RTAGAVVER 177

Query: 84  GDIEQVIEDFIAVD-KRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRGG-KVTISV 140
            D+  V+          + +        ++  ++A+++ +L  +   +   G  ++T+ V
Sbjct: 178 VDVAAVVHALARTGPAELDLHVDAPAPVVALVDQARLIRSLEQLIDNARRAGARQLTLRV 237

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                     + +  +    P  +T       
Sbjct: 238 SGRPGPAGVRVLVVDDGPGLPAGWTSQTATTP 269


>gi|171915807|ref|ZP_02931277.1| sensor protein ZraS [Verrucomicrobium spinosum DSM 4136]
          Length = 399

 Score = 36.0 bits (82), Expect = 3.4,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 78/217 (35%), Gaps = 18/217 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF---- 66
            +L + + H++ +P+ ++   L+LLD         E   ++ +   +   I RL F    
Sbjct: 153 TMLAAGVAHELGNPLNSLTIHLQLLDRRLRKLKAAEAGRLREMVEVAQGEIKRLDFIIGQ 212

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSRERAKIL 119
              A   T      + L ++ +    F+A       V+ R+ ++ +   + L   + K  
Sbjct: 213 FLAAIRPTHPQLQRVQLNELIEEAVKFLAPELKQHKVEVRLDLTRSLPLMPLDANQMKQA 272

Query: 120 L-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
             NL   +  ++  GG++TI    +  E   +    G      E  + +      +    
Sbjct: 273 FYNLIRNSMQAMGEGGRLTIISTFTDFEVRLTFADTGKGISG-ENLSNLFQPFFTTRKTG 331

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +  E+   +  E  +     ++  L +
Sbjct: 332 TGLGLLIVRRIIREHGGEIELESREGEGTKVNIYLPR 368


>gi|120610580|ref|YP_970258.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120589044|gb|ABM32484.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1057

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 19/205 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR----LSSMSAIIRLKFMRLAFGY 73
           + H++ +P+ AI  + ++L       E     + +I+      +      L   R+  G 
Sbjct: 708 LSHELRNPLAAIAAASDVLSTGAGGAETTSQALGIIQRQTQHLASMMRDLLDVSRVLRGS 767

Query: 74  TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKI---LLNLFMVAH 127
                    L + +  V E         + +W    +   ++ +  +I   ++NL   A 
Sbjct: 768 AVLARRPTDLAERVRSVRESLYVGGTMQRHAWTFDLQPAWINGDATRIEQVIVNLLQNAI 827

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQ 182
              P G  + +SV  S +E + S+   G+       P  F     G   ++       + 
Sbjct: 828 KYTPEGRSIDVSVACSGDEAVLSVADGGDGIDEDLLPHIFDLFRQGERMLDRQDGGLGVG 887

Query: 183 FYYVILLAHENKIRLLPEIIDDHNV 207
              V  L  ++   +      +  V
Sbjct: 888 LTLVQHLVEQHGGTIDVATSAEGTV 912


>gi|5566398|gb|AAD45389.1|AF166333_1 histidine protein kinase AsgD [Myxococcus xanthus]
          Length = 773

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 31/219 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKF--MRLAF 71
           + HD+ +P+ AI  S  LL++ G   E  + +      A  R        L F   RL  
Sbjct: 558 VSHDLRNPLAAISMSAGLLEKKGALTEPQKRMVWRIGQATERAARMIRDLLDFTKARLGG 617

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKIDLSRERAKILLN 121
           G      +      + QV+++ +           V   V+  W  ++I      A++L N
Sbjct: 618 GIALHRQTTDLREVVHQVVDELLVANPGRRVEVEVQGEVRGEWDSDRI------AQVLTN 671

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDS 178
           L   A A  P    V +  +      + S+   G        P  F  +  G ++    +
Sbjct: 672 LLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLPRLFEPLTRGALKEGQST 731

Query: 179 HDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I    Y V  +   +   +     + H    +  L +
Sbjct: 732 RSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVRLPR 770


>gi|116623299|ref|YP_825455.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226461|gb|ABJ85170.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 531

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV-AHASLPRGGKVTISVQDSKNENIFS 150
           D  +++ R  ++     ++    + + ++ + MV A  ++P+GG + +S +  K      
Sbjct: 394 DMQSIELRETLAEGLPPVECDANQIQQVILVLMVNASEAMPKGGTLEVSTEFDKTAEQGV 453

Query: 151 LKINGNLARFPEKF 164
           +++    +  P   
Sbjct: 454 VRVRDTGSGIPADV 467


>gi|134293448|ref|YP_001117184.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia vietnamiensis G4]
 gi|134136605|gb|ABO57719.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia vietnamiensis G4]
          Length = 425

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 65/213 (30%), Gaps = 20/213 (9%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
             +L S I HD+ +P+  +    +LL + G  D     +R +   + +  +F+  A    
Sbjct: 214 AVMLAS-IAHDLRTPLTRMQVRADLLTDPGDRD---GFLRDTESMSRVITQFLDFARESP 269

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERA---KILLNLFMVA 126
            S           +   D +A                   D +       +IL NL    
Sbjct: 270 ESSPQTSVDAHCRRDYTDALAPGGAADTDALVMLDLRAGPDFTLPIVDIDRILSNLV--- 326

Query: 127 HASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHD-I 181
             +L  G   V I+ +         ++ +G     P+        V  +      +H  +
Sbjct: 327 ENALTYGEPPVEIATRAHDGHYELVVRDHGPGVSEPDLDRVLRPFVRLDPARGGTAHSGL 386

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  L   +   L      D  +V++    
Sbjct: 387 GLAIVRRLVRHHGGTLQIANAADGGLVITMRFP 419


>gi|330938966|gb|EGH42453.1| sensor histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 468

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 79/217 (36%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        + RV            +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLRADGNGRVTQQGEAHAAYSGKPLALKRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGDRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|153003908|ref|YP_001378233.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027481|gb|ABS25249.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 664

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + H++ +P+  I NS+ LL+    + E      +++R  +          L   R++ G 
Sbjct: 311 LSHELRNPLAPIRNSIYLLERAAADSEQATRAREVVRRQTEHLTRLIDDLLDVTRISHGK 370

Query: 74  TGSVDSLIGLGDIEQVIED-----FIAVDKRVQVS-------WTGEKIDLSRERAKILLN 121
                S + L +I +   D     F     R++V        W           A++L N
Sbjct: 371 IPLERSRVDLREIVRKTTDDLYSVFTQGGVRLRVDHVTAGPMWIEADST---RMAQVLTN 427

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           L   +    P GG V +SV   +      +  +G
Sbjct: 428 LLNNSMKFTPSGGAVRVSVAAREGGAELCVTDDG 461


>gi|89901263|ref|YP_523734.1| histidine kinase [Rhodoferax ferrireducens T118]
 gi|89346000|gb|ABD70203.1| histidine kinase [Rhodoferax ferrireducens T118]
          Length = 716

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 63/166 (37%), Gaps = 26/166 (15%)

Query: 21  RICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           R+ H++ +P+  I N L +LD+       + DE++ L         I  +F  +A     
Sbjct: 490 RVVHEVNNPLSIIKNYLGVLDDKLTRQEPVADELLILNEEIDRVGNIINEFAGVA----- 544

Query: 76  SVDSLIGLGDIEQVIEDFIA--VDKR-----VQVSWTGEKIDLSRERA-----KILLNLF 123
              +  G  +I +V+ D +    + R     VQ+     +       +     +IL+NL 
Sbjct: 545 -PKTQAGATEINRVVNDLVRLFRESRFLPPSVQIVARMPEQIAEINGSADILKQILVNLL 603

Query: 124 MVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFTQ 166
             A  +LPRGG + I             F L I  +    P +   
Sbjct: 604 KNAVEALPRGGHIEIDNKGCVQRDGRAFFELCIKDDGPGIPAEVLA 649


>gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1037

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 22/171 (12%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI----IRLK 65
           + +A+L     H++ +P+  I N+L+LL +    G E   + +I   +          L 
Sbjct: 673 EFLAMLA----HELRNPLAPISNALQLLKQSRFAGQEAWCLAVIDRQAAHLQRLVDDLLD 728

Query: 66  FMRLAFGYTGSVDSLIGLGD----IEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKI-- 118
             R+  G        + + +      +     I A    +++    E I L  +  ++  
Sbjct: 729 VSRITRGVIELRPEPLDVTEIIDRAVETSRALIEARRHELRIRTPTEPIRLMGDLVRLTQ 788

Query: 119 -LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165
            + NL   A      GG + I V+      +  ++ NG      R P+ F 
Sbjct: 789 VVSNLLANAAKFTDEGGCIAIDVEREATTVLIRVRDNGLGIEPERLPQLFD 839


>gi|225873257|ref|YP_002754716.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
 gi|225793041|gb|ACO33131.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
          Length = 361

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 29/182 (15%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEV---MQLIRLSSMSAII- 62
           SS  L+ L  L + I H+I +P+ +I N L LL  E G+       + LI       I  
Sbjct: 93  SSHKLIELGRLSASIAHEINNPLSSITNLLFLLRQEPGLSPLATGYLDLIESEMDRVISI 152

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
               L F R       S    + L + +E+V+  F+   +  Q      +  L  E    
Sbjct: 153 SKQTLSFSR-----ESSTPDHVSLVELVEEVL--FLYRHRVEQKHLEVRREYLPVEAVWG 205

Query: 117 ------KILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQI 167
                 ++L NL + A  +  +GG++ I ++   + + ++   + +       P +  + 
Sbjct: 206 NPGELRQVLSNLIVNAIDASRQGGRLQIRIRKAANGRGDSGIRVTVADTGTGIPPEVLRR 265

Query: 168 VD 169
           + 
Sbjct: 266 LG 267


>gi|144899195|emb|CAM76059.1| Nitrogen regulation protein ntrB [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 372

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59
           ++N   ++S+M   A+L     H++ +P+  I  + +LL+    ED+ +  +LI   +  
Sbjct: 136 SRNAARSVSAM--AAMLA----HEVKNPLSGIRGAAQLLESAASEDDRVLTRLIIDEADR 189

Query: 60  AIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +  +     F        G+V+    L  + ++ E+  A   R+  ++      ++ +R
Sbjct: 190 IVALVDRMEVFSDKPMVERGAVNIHQVLEHVRRIAENGFARTVRIVENYDPSLPPVAGDR 249

Query: 116 ---AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLAR 159
               ++ LNL   A  ++P  GG++ IS   +  ++   L I G+  R
Sbjct: 250 DQLIQLFLNLVKNAAEAVPSEGGEIIIS---TAYQHGVRLAIPGSEVR 294


>gi|148546294|ref|YP_001266396.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
 gi|148510352|gb|ABQ77212.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 484

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 38/218 (17%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           + L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K   +
Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
                      + L  + +++ +    D R+ V          +  A  + + NL     
Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182
            ++  G +  + + D     +  +   G           +    +E   + H       Q
Sbjct: 393 NAIKYGERARLRIIDGTEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443

Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            Y + L     +AH +   +    + +  + ++  L +
Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481


>gi|116623028|ref|YP_825184.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226190|gb|ABJ84899.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 684

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
           L EV      +  IR +   A       L F R   G    V+    + + E+++   + 
Sbjct: 352 LSEVDPRRAQVNEIRKAGAHAAELTQQLLAFSRKQVGRPRPVNLNSVVSEAEKMLRRILG 411

Query: 96  VDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
            D R+          +        ++L+NL + A  ++P GG + I   D++  +    +
Sbjct: 412 EDVRLITRLDPSTGLILADPGYVHQMLMNLAVNARDAMPDGGSLVIETSDAQRHDEEGSR 471

Query: 153 IN 154
           I 
Sbjct: 472 IA 473


>gi|330969213|gb|EGH69279.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 472

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 270 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 320

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        + RV      +     +  A  + + NL 
Sbjct: 321 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAQAAYSGKPLALKRCIGNLI 378

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D  + + F L ++      PE+  + V       +  +  Q 
Sbjct: 379 ---DNALKYGDRAHLKVED--DAHAFVLHVDDEGPGVPEQRLEHVF-EPHFRLAGNQQQG 432

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 433 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 469


>gi|294676209|ref|YP_003576824.1| sensor histidine kinase [Rhodobacter capsulatus SB 1003]
 gi|294475029|gb|ADE84417.1| sensor histidine kinase [Rhodobacter capsulatus SB 1003]
          Length = 410

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 49/137 (35%), Gaps = 3/137 (2%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H++ +PI AI   L+LL   G     + ++   +      L+  R   G          +
Sbjct: 224 HELRTPIAAIRGRLDLLGGPGAAA-ALPMLDDLTRRVERLLQLSRSEAGLGLGRGPSDLV 282

Query: 84  GDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQ 141
                ++E+       V+      E + L  +   + + +  +   +L  G G V + + 
Sbjct: 283 QVARLLVEEARRQGAEVRFDDGDVESLSLPVDADALAILIRNLLENALEHGTGPVRVVIS 342

Query: 142 DSKNENIFSLKINGNLA 158
            + +    +L I    A
Sbjct: 343 LAGDGGGAALMIENPTA 359


>gi|85703239|ref|ZP_01034343.1| sensory box sensor histidine kianse/response regulator [Roseovarius
           sp. 217]
 gi|85672167|gb|EAQ27024.1| sensory box sensor histidine kianse/response regulator [Roseovarius
           sp. 217]
          Length = 765

 Score = 36.0 bits (82), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGS 76
           I HD  + + AI    +LL    D+   +   +  +  ++  A   +  + LA+      
Sbjct: 404 IAHDFNNLLTAISGHCDLLLLRHDQGDPDYSDLMQVNQNANRAAALVSQL-LAYSRKQTL 462

Query: 77  VDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHAS 129
              +I L D    +   +     ++V +S + +          R+  ++L+NL + +  +
Sbjct: 463 RPQVIDLRDTLSDLTHLLNRLVGEKVSLSLSHDPTLSPIRADKRQLEQVLMNLVVNSRDA 522

Query: 130 LPRGGKVTI 138
           +P GG++ I
Sbjct: 523 MPMGGEIRI 531


>gi|330875144|gb|EGH09293.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 638

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + +  I  SLEL+           L         S+  A      + LAF    
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371

Query: 76  SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
           S+DS  + +  +   +++ +       +          WT E      +    LLNL + 
Sbjct: 372 SLDSKPVEINHLVNAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181
           A  ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S   
Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486

Query: 182 QFYYV 186
             ++ 
Sbjct: 487 DPFFT 491


>gi|28870744|ref|NP_793363.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968962|ref|ZP_03397102.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|28853992|gb|AAO57058.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926261|gb|EEB59816.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 646

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            LLNL + A  ++PRGG++TI   +   +E     +            +    G     I
Sbjct: 389 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 448

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
           +     F+    L     + L 
Sbjct: 449 NRAFDPFFTTKPLGQGTGLGLS 470


>gi|77458987|ref|YP_348493.1| GAF sensor Signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
 gi|77382990|gb|ABA74503.1| GAF sensor signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 373

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 71/225 (31%), Gaps = 51/225 (22%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD+ +P+ AI  S +LL+    +   + LI     ++  R        L F R      G
Sbjct: 160 HDLRTPLSAIRMSADLLETKTTDKRSLSLISA-IRTSSTRMGNLIENVLDFAR------G 212

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------------KI 118
            + S I    I++ + D +    R+ ++    ++ +S  RA                 +I
Sbjct: 213 RMGSGIP---IKRQLVDDLGNTLRLTLN----EVQISHPRATFIELVDIPAGVYCDPLRI 265

Query: 119 LLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIV--------D 169
              L  +   ++  G   + I+V+     +   + +       P   + ++         
Sbjct: 266 SQLLSNLLGNAVTHGSLASPITVKADTEVDEIVISVTNQGPPIPPHLSPLLFEPFTRSEA 325

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G     +    +  Y    +   +   L      +      A   
Sbjct: 326 GQRGEGL---GLGLYIASQITTAHGGNLSVVSTLESGTCFVARFP 367


>gi|301382802|ref|ZP_07231220.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134577|ref|ZP_07260567.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 660

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            LLNL + A  ++PRGG++TI   +   +E     +            +    G     I
Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 462

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
           +     F+    L     + L 
Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484


>gi|218461965|ref|ZP_03502056.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium etli Kim 5]
          Length = 593

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + +      A  R + +  +    GS   +
Sbjct: 388 VSHEVGNMIGIITGSLGLLERETGFNDRQKRHLAR-IRKAADRGRSLAGSMLSIGSQQPI 446

Query: 81  IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129
                ++  V+        IA+ ++ ++ +            +    + +LNL + + A+
Sbjct: 447 HPSEVELGSVLRGMADVLEIAIGEKCRLDFEIADDLPMIFIDTALFEQSILNLCLNSAAA 506

Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155
           +P GG + I    S+     S+  +G
Sbjct: 507 MPAGGTIRIRCARSEAGMTVSVTDDG 532


>gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 776

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 21/199 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--------SMSAIIRLKFMRLAFGY 73
           + H++ +P+  + N LE+L      D  +   R          +      L+  R+  G 
Sbjct: 422 LAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHLVDDLLEVSRITQGK 481

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL-----SRERAKILLNLFMV 125
                  + L    Q   +      +     +S T  +  L         ++++LNL   
Sbjct: 482 LELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNN 541

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDSHD 180
           A    P GG ++++ +   +E +  ++ +G                 +   ++ +     
Sbjct: 542 AAKYTPPGGSISLAAEREGDEAVIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLG 601

Query: 181 IQFYYVILLAHENKIRLLP 199
           I    V  LA  +   +  
Sbjct: 602 IGLALVRGLAELHGGTVAA 620


>gi|331015863|gb|EGH95919.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 660

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            LLNL + A  ++PRGG++TI   +   +E     +            +    G     I
Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 462

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
           +     F+    L     + L 
Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484


>gi|241664376|ref|YP_002982736.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
 gi|240866403|gb|ACS64064.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
          Length = 763

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 18/162 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSA--- 60
           ++ +L A   S + HD+ +P+  I    ELLDE+  +         +Q I  SS  A   
Sbjct: 521 ANHELEAFSYS-VSHDLRAPLRHIAGYAELLDEMEGQHVSERGRHFLQTISESSRFAGKL 579

Query: 61  -IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKI 118
               L F ++  G     D  + L  +  V+ D      R  + W    + + R   A +
Sbjct: 580 VDDLLTFSQMGRGALHLTDVDLALL-VRGVVRDLTVDQGRRHIEWNIAALPVVRADPAFL 638

Query: 119 LLNLFMVAHASL--PRG---GKVTISVQDSKNENIFSLKING 155
            L +  +   ++   RG    ++ I  + +  E I  +  NG
Sbjct: 639 QLAMRNLLSNAIKYTRGREPARIHIDAEQTDTETIVRIADNG 680


>gi|39936943|ref|NP_949219.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39650800|emb|CAE29323.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Rhodopseudomonas palustris CGA009]
          Length = 882

 Score = 36.0 bits (82), Expect = 3.6,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           MD +  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 496 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 555

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID-LSRERA----KILL 120
           LAF         ++ LG+    I+  +     +++ +     +    ++       ++++
Sbjct: 556 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKISLEMQHGRDLWRTKADVSQFEQVIV 615

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           NL + A  ++P GGK+TI   +        L  NG
Sbjct: 616 NLAVNARDAMPDGGKLTIRTANVTASEASQLGHNG 650


>gi|330964355|gb|EGH64615.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 696

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            LLNL + A  ++PRGG++TI   +   +E     +            +    G     I
Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDERGSQTRDLSPGQYLSLCVSDTGTGMSPEVI 499

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
           +     F+    L     + L 
Sbjct: 500 NRAFDPFFTTKPLGQGTGLGLS 521


>gi|302062958|ref|ZP_07254499.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
          Length = 649

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            LLNL + A  ++PRGG++TI   +   +E     +            +    G     I
Sbjct: 403 ALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCVSDTGTGMSPEVI 462

Query: 177 DSHDIQFYYVILLAHENKIRLL 198
           +     F+    L     + L 
Sbjct: 463 NRAFDPFFTTKPLGQGTGLGLS 484


>gi|66047001|ref|YP_236842.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|63257708|gb|AAY38804.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
          Length = 394

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 75/215 (34%), Gaps = 31/215 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++  Q+++    S   A       L F R   G+   
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKAQQIVQHILTSGQRASQLVDDVLDFARGRMGH--- 239

Query: 77  VDSLIGLGDIE---QVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125
               + + +     + +E  I+  +RV             E+I    ER A++L NL   
Sbjct: 240 -GIPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 296

Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179
              ++  G  +  + V    +  +F L +       PE     +       I        
Sbjct: 297 -SNAISHGDAESPVEVTAGVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  Y    +A  +   L      +   V +  + 
Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390


>gi|226946292|ref|YP_002801365.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ]
 gi|226721219|gb|ACO80390.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ]
          Length = 981

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 69/173 (39%), Gaps = 17/173 (9%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFM 67
           S  L ++  L + + H+I +PI  I    + L E   +D  +  I    +    R+ + +
Sbjct: 749 SERLASIGRLAAGVAHEIGNPITGIACLAQNLREEHEDDAELGEISSQIIDQTKRVTRIV 808

Query: 68  R--LAFGYTGS---VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDL---SRER 115
           R  ++F + GS       + L DI +     +++++       ++       +    +  
Sbjct: 809 RSLMSFAHAGSHTQASEAVCLADIAREAIGLLSLNREGTEVSFLNLCDPGHCVVGDPQRL 868

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            ++L+NL   A  + P GG + +  +  +      ++  G+    P+     +
Sbjct: 869 VQVLVNLLSNARDASPPGGVIRVRSEAVEQSIDLIVEDEGSG--IPKAIAGRL 919


>gi|330827911|ref|YP_004390863.1| sensor histidine kinase [Aeromonas veronii B565]
 gi|328803047|gb|AEB48246.1| Sensor histidine kinase [Aeromonas veronii B565]
          Length = 463

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 11/184 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI ++    E L +   ++ + Q ++         L F R   G   +   L 
Sbjct: 267 ISHDLRTPITSLRLRTEFLADGEDKERIQQTLQQMEQMLAATLSFAREE-GQQEATRELD 325

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTIS 139
            +  +  + +D+    + V     G+++   R     ++L NL      ++   G   +S
Sbjct: 326 LVSLLVSLCDDYADTGQPVTCLAEGKEVYACRANTLRRVLQNLI---GNAIKYAGSAEVS 382

Query: 140 VQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVESTIDSHDIQFYY--VILLAHENK 194
           ++  K E +  +  NG     AR  + F   V  +     +S  +         L H++ 
Sbjct: 383 LERRKEELLIRVCDNGPGIDPARLEDVFKPFVRLDEARNTESGSVGLGLSIARTLVHQHG 442

Query: 195 IRLL 198
             L 
Sbjct: 443 GELT 446


>gi|256783166|ref|ZP_05521597.1| two component system histidine kinase [Streptomyces lividans TK24]
          Length = 508

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 19/215 (8%)

Query: 19  CSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAI----IRLKFM 67
            + + H++ +P+ A+    E+LDE           ++ ++LI     +        ++  
Sbjct: 287 AADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTEDAVRLISEEVRTLTRMVEDLMEVS 346

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           R            + L  +          A D+RV+     E   +  +  +I + L  +
Sbjct: 347 RFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVRAD-LPEPAPVRVDPRRIDVVLGNL 405

Query: 126 AHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-SHD 180
              +L  GG  VT++V+ S +    ++   G        P  F +    +          
Sbjct: 406 VANALHHGGPPVTVAVRVSDDRVRVTVTDRGPGIPDDALPYVFDRFYKADAARPRSGGSG 465

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +        A  +   L          V +  L +
Sbjct: 466 LGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 500


>gi|322418783|ref|YP_004198006.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125170|gb|ADW12730.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 981

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 76/218 (34%), Gaps = 26/218 (11%)

Query: 19  CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQL---IRLSSMSA----IIRLKFMR 68
           C  I HD+ SP+ AI     +L    E     E  QL   I  S++         L F R
Sbjct: 747 CYTISHDLRSPLRAIDGFTHILREDHEADFNAEGRQLCQRISGSAVRMGELIDDLLNFSR 806

Query: 69  LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLS-RERAKILLNLFMVA 126
           +  G        I + D +  V ++ +  + R ++ +    +  +  +RA +      + 
Sbjct: 807 I--GRAALQADPIEMTDLVRAVFDEVVPQEARRRIEFRLAPLPPAIGDRATLRQVWANLI 864

Query: 127 HASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-- 179
             ++          + I  + ++ E +F ++ NG    F   +   + G  +    +H  
Sbjct: 865 DNAVKYSSDRPRQVIEIGGEQTETETVFQVRDNGVG--FDMAYADKLFGVFQRLHGAHEF 922

Query: 180 ---DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +  R+  E   D    L   L 
Sbjct: 923 RGTGVGLAIVGRIVQRHGGRVWAEGAVDRGATLYFSLP 960


>gi|148550792|ref|YP_001260231.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingomonas wittichii RW1]
 gi|148503211|gb|ABQ71464.1| response regulator receiver sensor signal transduction histidine
           kinase [Sphingomonas wittichii RW1]
          Length = 377

 Score = 36.0 bits (82), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 23/215 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDE-VGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGYT 74
           + H++ +PI A+   L L++    +E   M      + +R         L   R+  G  
Sbjct: 163 LAHELRNPIMAMGAGLHLMERRPDLETATMVRGQMSKYVRHLGSLVEDLLDIARIDQGKI 222

Query: 75  GSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKID-LSRERAKILL---NLFMVA 126
                 + L D+           I       +     K   L  + A++     NL   A
Sbjct: 223 ALKKERLLLQDLLSFAVEGSRHHIDAASHELIQHVAPKPIWLEADHARLAQVVGNLLTNA 282

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDGNVESTIDSHD 180
               P GG++ +S +  +++    +   G        AR  + F QI DG+ + T +   
Sbjct: 283 AKYTPAGGEIRLSARREEDQVRIEVADTGVGIPAEMQARIFDLFAQI-DGSNQRTQEGLG 341

Query: 181 IQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
           I    V  L   +   +  +        V   ++ 
Sbjct: 342 IGLALVKQLVELHGGTIALKRSAPGEGSVFEVVVP 376


>gi|94970302|ref|YP_592350.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552352|gb|ABF42276.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 631

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 30/226 (13%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR 63
           S  L A+  L S + H++ +PI AI   LE+L     +        M +I          
Sbjct: 391 SRRLAAIGRLTSGVAHEVKNPINAIVVHLEILKNKLQEVAPDARRHMDIIENEIRRLDRV 450

Query: 64  LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS- 112
           ++    F R        V+  +   D+ ++ E+        A +K V + +   +  L  
Sbjct: 451 VQTLVDFTR-------PVELKLFDADLRKIAEEVALLAGPEAANKNVHIEFNAVEKTLPV 503

Query: 113 ---RERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               +  K  +LN+ +    ++  GG + I+ + + +  +  +   G      E   +I 
Sbjct: 504 YVDTDLVKQAILNIVINGVQAMSDGGTLKITARSNDSAALLEISDQGPGI-PKEIQDKIF 562

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      I       +   +   L  E            + 
Sbjct: 563 NLYFTTKKTGTGIGLAMTYRVMQLHNGALEFETEPGKGTTFRLQVP 608


>gi|108763723|ref|YP_629389.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622]
 gi|6578850|gb|AAF18102.1|AF204400_2 FrgB [Myxococcus xanthus]
 gi|108467603|gb|ABF92788.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622]
          Length = 510

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 70/222 (31%), Gaps = 26/222 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIR 63
            L  L    +++ HD+ +PI A+  + + L E              + L+          
Sbjct: 280 RLATLGRFSAQMAHDLKNPIAAMKGAAQYLKEEHARGRSWDGQGEFLDLLLEQVERLDRV 339

Query: 64  L-KFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAK 117
           +  + RLA      V+ L    D+ +++E        A   +V +              +
Sbjct: 340 VDTYQRLA-----RVEPLPKPVDLRRLVEGVLSLQVFASPGKVVIIRELAAGLPPCAGDQ 394

Query: 118 ILL-----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            LL     NL   A  ++P GG +T+       +    ++  G          +  D   
Sbjct: 395 DLLANALENLVRNACEAMPGGGTLTVRALRDGADVAMEVEDTGEGM-DARTRERAFDDFF 453

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +   +V  +   +   +L    +    V+   L 
Sbjct: 454 TTKASGSGLGLAFVRRVVEAHGGEVLLTSREGRGTVVRMRLP 495


>gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 877

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRL-KFMRLAFG 72
           + + H++ +P+GA+ N  E L E         +  ++Q I       +  +   + L+  
Sbjct: 529 AHMSHELRTPLGAMLNLAEALAEESLGTLNEAQRRILQSIEECGRHFLSLIGDILDLSKV 588

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDL-----SRERAKILLN 121
             G +D +    D+  +    +    R      + VS    +         +   +IL+N
Sbjct: 589 EAGRLDLVRSPLDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVN 648

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIV------DGNVES 174
           L   A    P+GG+V + V         ++ +        PE   ++       +G +  
Sbjct: 649 LLSNAVKFTPQGGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSR 708

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +    V+ +   +   L  E         +  L 
Sbjct: 709 SFSGTGLGLSLVLRMVELHGGGLQVESAPGEGSRFTVRLP 748


>gi|298485852|ref|ZP_07003929.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159630|gb|EFI00674.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 468

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEHLQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  +++  +        + RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLDCLVEPWLLADGNGRVTQQGEAQAAYPGKPLALRRCMGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D+    +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDNATAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + +  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLYLPR 465


>gi|171912097|ref|ZP_02927567.1| putative sensor histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 395

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 26/212 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSAIIRL-KFMRLAFGYTGSVDS 79
           HD+ SP+GAI     +L E  + ++    + ++  +       +   M L  G  G   S
Sbjct: 184 HDLRSPLGAISMGALMLKEGELSEDQHATVAMMERNVAKISDLVDDVMDLTRGRLGGGIS 243

Query: 80  LIGLGDI--EQVIEDFIAVDKRVQ-------VSWTGEKIDLSRERA-KILLNLFMVAHAS 129
           L  L D   E V+   +  ++ ++       V     ++   R R  ++  NL      +
Sbjct: 244 LKDLTDAPLEPVLRQIVEQEQTIRPQPLIECVFAINHRVSYDRNRMGQLFSNLL---SNA 300

Query: 130 LPRG--GKVTISVQDSKNENIFSLKINGNLARFPE-----KFTQIVDGNVESTIDSHDIQ 182
           +  G  G V ++V+ S ++  F+L ++      P+      F   + G          + 
Sbjct: 301 MKYGLPG-VPVAVRASTDQERFTLSVSNGTDPIPQEELDKLFLPFMRGPGAREEKGLGLG 359

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y    +A  +  ++   + +   V  +  + 
Sbjct: 360 LYIASEIAASHSGKIDV-VSEKGVVCFTFTMP 390


>gi|163744381|ref|ZP_02151741.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381199|gb|EDQ05608.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 666

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 66/194 (34%), Gaps = 39/194 (20%)

Query: 24  HDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL---------------- 64
           H++ +P+ ++  SLE+L E     I     +L+ +++ +A   L                
Sbjct: 432 HELSTPLRSLAGSLEILHERFGDTIPKSAGELLTMATRNAERLLVLVNDIQTLQAIDQQQ 491

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERA---- 116
              +F R+A            L +       + A  D R+++    +    +  R     
Sbjct: 492 LSIQFERVA--------VSDLLSEAIATNSGYGANRDVRLKMRTAPDAPQDAYIRVDPVR 543

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +IL NL   A    PRGG V I     + +  F +   G     P      +      
Sbjct: 544 MQQILSNLISNAIKYTPRGGTVKIGADVDQEKVTFYVCDAGPG--IPRSAHDRMFKRFAD 601

Query: 175 TIDSHDIQFYYVIL 188
            + S D Q Y   L
Sbjct: 602 PVHSRDTQAYGTGL 615


>gi|104783384|ref|YP_609882.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95112371|emb|CAK17098.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 484

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 75/211 (35%), Gaps = 24/211 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           A L S + HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K   +
Sbjct: 284 AQLFSAVSHDLRTPITRLRLRVELLEDEQVQAKFNRDLDELELL---VKGALQCVKDTDI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
                      I L  + +++ +    D R+ V          +  A  + + NL     
Sbjct: 341 -----HENIEPIDLNQVLEMLAEPYVGDGRITVEGKALSPYPGKSLALRRCIGNLI---D 392

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFY 184
            ++  G +  + + DS    +  +   G      R  + F       +      + +   
Sbjct: 393 NAIKYGERAHLRILDSAESFVLQVDDQGPGVPEQRLEQVFEPHF--RLAGQQQGYGLGLG 450

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +AH +   +    + +  + ++  L +
Sbjct: 451 IARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481


>gi|327189341|gb|EGE56509.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 440

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    ++ ++   +D++M  +          + + R A G  G  ++ I
Sbjct: 243 ISHDLQTPITRMRLRADMAEDSPEKDKLMNDLGEIQRLVQDGIAYARSAHGN-GEKNARI 301

Query: 82  GLG-DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
            L   I+ +  D+    K V V    +    ++  A  +IL N       +L   G   I
Sbjct: 302 DLASFIDSIAYDYQDTGKAVTVLGLVQGAAFTKPHALRRILSNFI---DNALKFAGAAEI 358

Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQI 167
           SV+ +   +   + +       P++  + 
Sbjct: 359 SVERNVEND-IVISVMDRGPGIPDEMLEA 386


>gi|271965270|ref|YP_003339466.1| osmosensitive K+ channel signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
 gi|270508445|gb|ACZ86723.1| osmosensitive K+ channel signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
          Length = 846

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 77/216 (35%), Gaps = 18/216 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA-------IIRLK 65
           ALL + + HD+ +P+ +   ++E L    IE   ++  +L+  +  S           L 
Sbjct: 625 ALLAA-VSHDLRTPLASARLAVESLRGTEIEWSAEDRAELLATADESLIKLDRLVANLLD 683

Query: 66  FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
             RL  G  G     + L + I + I+D   +  RV+   + +  ++  + A   +IL+N
Sbjct: 684 MSRLQAGVLGLTLQPVALEEVIPRSIDDLGPLRDRVEGDVSVDLPEILADSALLERILVN 743

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD- 180
           +   A    P G KV I+     +     +   G            +        D+H  
Sbjct: 744 VMSNAVRYSPAGKKVLITASRHGDHVEIRVVDRGPGIPAEAHDRVFMPFQRLGDRDNHTG 803

Query: 181 --IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       LA      L PE      + +   L 
Sbjct: 804 VGLGLALSRGLAEAMGGTLTPEETPGGGLTMVLTLP 839


>gi|149919249|ref|ZP_01907732.1| two-component hybrid sensor and regulator [Plesiocystis pacifica
           SIR-1]
 gi|149819963|gb|EDM79385.1| two-component hybrid sensor and regulator [Plesiocystis pacifica
           SIR-1]
          Length = 743

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 20/193 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL----SSMS 59
             MD + LL S + HD  + +  I    ELL      +E       ++LI      S+  
Sbjct: 380 DKMDALGLLASGVAHDFNNMLTGILGGAELLRATISPEEEEDALPFIELISDAAERSAEL 439

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI- 118
               L F R +      VD    + +   ++   +    ++Q         +  +R ++ 
Sbjct: 440 TAQLLSFSRKSHVELSPVDVHASVREAVALLRRSLDKRVQIQTRLDAAHATVIGDRGRLL 499

Query: 119 --LLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNL------ARFPEKFTQIVD 169
             L+NL + A  ++  GGK+T S +     +    ++  G+       AR  E F     
Sbjct: 500 SALINLGVNASHAMHGGGKLTFSTRLREPTQLEIEVRDTGSGISEDNLARIFEPFFTTKK 559

Query: 170 GNVESTIDSHDIQ 182
               + +    +Q
Sbjct: 560 EGKGTGLGLAAVQ 572


>gi|149915202|ref|ZP_01903730.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149810923|gb|EDM70762.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 766

 Score = 36.0 bits (82), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 72/193 (37%), Gaps = 21/193 (10%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIRLKFMRLAFG-YTGSVD 78
           HD  + + AI    +LL    + G  D   +  I  ++  A   +  + LA+        
Sbjct: 406 HDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQISQNANRAAALVSQL-LAYSRKQTLRP 464

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
            ++ L D+   +   +     ++V +    + +        R+  ++L+NL + A  ++P
Sbjct: 465 EIMDLRDMLADLTHLLNRLVGEKVSLLLRHDPVLARIRADKRQLEQVLMNLVVNARDAMP 524

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FYYV 186
           +GG++ I  ++   +        G     P ++  +V  +    I    +Q     FY  
Sbjct: 525 QGGEIRIVTENLLLDEPLR---RGRAVVAPGRYVSVVVSDEGVGIAPDKLQKVFEPFYST 581

Query: 187 ILLAHENKIRLLP 199
             +     + L  
Sbjct: 582 KRVGEGTGLGLST 594


>gi|330968488|gb|EGH68748.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 247

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 20/206 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YTGSVDSL 80
           I HD+ +PI  +   +ELLD+    D++++ +          L F+R   G         
Sbjct: 44  ISHDLNTPITELRLQMELLDDGPERDDMLESLDELRAMVRETLNFVR---GDAVQEATVE 100

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----AKILLNLFMVAHASLPRGGKV 136
           I L  +   +    A      + W G    + R R     + L NL      +L   G  
Sbjct: 101 ISLTALIDDLAKRYATMGTP-IGWRGASEIMCRCRPLALKRALTNLI---DNALKHAGDA 156

Query: 137 TISV-QDSKNENIFSLKINGNLARFP------EKFTQIV-DGNVESTIDSHDIQFYYVIL 188
           T+S+ +    +    +  +G            E F Q+   G          +       
Sbjct: 157 TVSLFKAPDGDIHLEVLDHGPGIEPAWLTQVFEPFVQLSQTGTDHPQGGGLGLGLAIARA 216

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
               +   L  E      +     L 
Sbjct: 217 CVQAHGGELTLENRPPAGLCAVVRLP 242


>gi|283835063|ref|ZP_06354804.1| sensor histidine kinase CreE [Citrobacter youngae ATCC 29220]
 gi|291069355|gb|EFE07464.1| sensor histidine kinase CreE [Citrobacter youngae ATCC 29220]
          Length = 474

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----FMRLAFGYTGSVD 78
           H++ SP+ AI  + E+L E G    V+     + ++   R++      +R A      ++
Sbjct: 265 HELKSPLAAIRGAAEILRE-GPPPNVVARFTDNILTQNARMQALVETLLRQA-----RLE 318

Query: 79  SLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125
           +   +      ++   A            K + ++ T   + ++ + A   + + NL   
Sbjct: 319 NRQDITLAPVAVDALFAQLKEARSVQLAAKNITLAITPSSLSVAADPALLEQAMGNLLDN 378

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQ 182
           A    P GG + +S    ++     +  +G+       P  F +      E+ + S  + 
Sbjct: 379 AIDFTPPGGTIALSAHQQEDRVTLQVVDSGSGIPDFALPRIFERFYSLPRENGLKSSGLG 438

Query: 183 FYYVILLAHENKIRLL 198
             +V  +A  ++  + 
Sbjct: 439 LAFVSEVARLHEGSVT 454


>gi|218528583|ref|YP_002419399.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218520886|gb|ACK81471.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1089

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 52/140 (37%), Gaps = 25/140 (17%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIR--------LKFMRLAF 71
           + HD  + + AI  SLELL     +  +  L R   ++  A+ R        L F R   
Sbjct: 722 LAHDFNNLLTAISGSLELLQTRLRQGRLSDLDRYINAAQGAVRRAAALTHRLLAFSR--- 778

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNL 122
                      +  +   +E+ I      ++          W    +    +    LLNL
Sbjct: 779 -RQTLAPKPTDMNRLVAGMEELIRRTVGPEIEVEAVKAVGLW--PTLVDPPQLENALLNL 835

Query: 123 FMVAHASLPRGGKVTISVQD 142
            + A  ++P+GG++TI   +
Sbjct: 836 CINARDAMPKGGRITIETAN 855


>gi|94494912|ref|ZP_01301493.1| sensor histidine kinase [Sphingomonas sp. SKA58]
 gi|94425178|gb|EAT10198.1| sensor histidine kinase [Sphingomonas sp. SKA58]
          Length = 570

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 22/159 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--LAFG-YT 74
           L + + HD  + +  +  ++EL+    ++D   +L+  ++ +     K  R  LAF   T
Sbjct: 189 LTAGLAHDFNNLLQIVTGNIELVLTGDLDDRQRRLLTNAARATDRGTKLTRQLLAFARKT 248

Query: 75  GSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKI--------LLNLFM 124
                 I L D+     D I   V  ++++    E+        +I        LLN+ +
Sbjct: 249 RLEPKRINLNDLIHDFGDLIDNTVGAQIRLVTALERRL---PDVQIDPSHLEMALLNVLL 305

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            A  ++P GG VTI+ +      ++ L  N    + PE 
Sbjct: 306 NARDAMPEGGTVTIATE------LWKLNGNAAAHQLPEG 338


>gi|120603096|ref|YP_967496.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563325|gb|ABM29069.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 391

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 19/208 (9%)

Query: 24  HDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           HD+++  G + +   L + D        M L+   + + +  +   R+      + +  +
Sbjct: 172 HDLLNMAGGLRSISGLLVEDVPLDVRADMLLVHRYATALVEEILAQRV-LVAAENDELGV 230

Query: 82  GLGD--IEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128
            L D    +V+ D I         +DKR+ +   G  + +S +R    ++L NL   A  
Sbjct: 231 ELRDVQAREVLRDVIELYRTHEACIDKRLVMEPCGGHLLISTDRVLLARVLGNLVKNALE 290

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           + PRGG VT   + + +   F +   G ++  PE   Q+   +  +      +  Y V L
Sbjct: 291 ASPRGGVVTAGCEATSSGVTFRVHNAGFIS--PEVRAQMFQRSFSTKGQGRGLGMYGVRL 348

Query: 189 LAHEN-KIRLLPEIIDDHNVVLSALLEK 215
           L       R+      D    L  +L +
Sbjct: 349 LTGNYLGGRVECLSSRDSGTTLLVILPR 376


>gi|148255719|ref|YP_001240304.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407892|gb|ABQ36398.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 600

 Score = 36.0 bits (82), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 38  ELLDEVGIEDEVMQLIRLSSMS---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
           E L +     +VM+LI+            L F R        +D    L D++++    +
Sbjct: 255 ECLGDDPRLPDVMELIKAIERGRDLTRQLLAFSRKQPATPTLLDLGATLADLQKMFRRLL 314

Query: 95  AVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
             +  + +    +   +  +R +   +++NL + A  ++P GG++TI + +   +     
Sbjct: 315 PSNIEISIDVEEQSWPVIADRVQVEQLIMNLALNARDAMPSGGQLTIRLANRTIQCGDEG 374

Query: 152 KINGN 156
              G+
Sbjct: 375 MEPGD 379


>gi|312196522|ref|YP_004016583.1| multi-sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311227858|gb|ADP80713.1| multi-sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 659

 Score = 35.6 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 16/147 (10%)

Query: 35  NSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-DSLIGLGDIEQVIEDF 93
            ++ L +  G     +  I+ ++  A    + + LAF  T  V    + + ++   IED 
Sbjct: 304 AAMLLGEVEGPARRDVTAIQEAAARASALTRQL-LAFARTQPVRPEPVDVDELVTGIEDM 362

Query: 94  IAVDKRVQVSWTGEKIDLSRERA--------KILLNLFMVAHASLPRGGKVTIS----VQ 141
           +    R  +         +R           ++L+NL + +  ++P GG++TIS      
Sbjct: 363 LRRLIREDI--QITVRAAARATVWADRGQLEQVLMNLAVNSRDAMPDGGRLTISTARAPA 420

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIV 168
              + +  ++ +       PE    ++
Sbjct: 421 GGADGDQVTITVADTGHGIPEDIQPMI 447


>gi|218887623|ref|YP_002436944.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758577|gb|ACL09476.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1222

 Score = 35.6 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKFMRLAFG-YTGSV 77
           I HD  + +G I +++E+L + G+          I  +++ A   ++ + LAFG      
Sbjct: 855 IAHDFNNILGVIMSNIEMLRDTGLTGRAATRADRILRAALRARDVVRQL-LAFGRPADEP 913

Query: 78  DSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
            + + L     D   +++  I     ++       + +  +  +I   LLNL   A  ++
Sbjct: 914 YATLDLCRTVADALHMVKPSIPASVTLRTLLPVAPLPVHGDITQIHQVLLNLCTNAVHAM 973

Query: 131 PRGGKVTISVQ 141
           P GG + +S+ 
Sbjct: 974 PDGGVLDVSLA 984


>gi|190895341|ref|YP_001985633.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190699286|gb|ACE93370.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 644

 Score = 35.6 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 17/190 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           I HD  + + A+  SLE+L +   +D  +  L+  +   A     L    LAF  +   +
Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346

Query: 79  SLIGLGDIEQVIEDFIAVDKR-----VQVSW----TGEKIDLSRERAKI-LLNLFMVAHA 128
             +   D+  ++   + +  R       +          I     + ++ +LNL + A  
Sbjct: 347 LHMEPIDVSGLVRGMMDILSRSLGPLTTIETYYPVRLPTILTDPNQLEMAILNLVVNARD 406

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG++T+   +            G   R         +G    T++     F+    
Sbjct: 407 AMPAGGRITLRASEESIAAGKGPLSAGRYVRI--AVVDEGEGMDAKTLEQAVTPFFTTKG 464

Query: 189 LAHENKIRLL 198
           +     + L 
Sbjct: 465 VGKGTGLGLS 474


>gi|302036059|ref|YP_003796381.1| hypothetical protein NIDE0686 [Candidatus Nitrospira defluvii]
 gi|300604123|emb|CBK40455.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 922

 Score = 35.6 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 30/173 (17%)

Query: 13  DLVAL--LCSRICHDI---ISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSA 60
            L AL  + S I HD    +SPI       ELL        +     E +Q I +++  A
Sbjct: 545 RLRALGQMASGIAHDFNNTLSPIMGFS---ELLLIAPQMASDPAQLKEYLQTINMAAKDA 601

Query: 61  I---IRLK-FMRLAFGY--TG------SVDSLIGLGDIE---QVIEDFIAVDKRVQVSWT 105
                RL+ F R        G       V   + L   +   Q + + +A++ + ++   
Sbjct: 602 AKVVSRLRDFYRPRLDADLAGIVDLNSLVQQSVKLSQPKWKDQALANGVAIEIKTELEPV 661

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                   E  ++L NL   A  ++P+ G +T+  +   +     +   G   
Sbjct: 662 PSVAGHESELREVLTNLVFNAVDAMPKSGSITLRTKVDGDAVRLEVSDTGTGM 714


>gi|289767047|ref|ZP_06526425.1| two component system histidine kinase [Streptomyces lividans TK24]
 gi|289697246|gb|EFD64675.1| two component system histidine kinase [Streptomyces lividans TK24]
          Length = 501

 Score = 35.6 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 19/215 (8%)

Query: 19  CSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAI----IRLKFM 67
            + + H++ +P+ A+    E+LDE           ++ ++LI     +        ++  
Sbjct: 280 AADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTEDAVRLISEEVRTLTRMVEDLMEVS 339

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           R            + L  +          A D+RV+     E   +  +  +I + L  +
Sbjct: 340 RFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVRAD-LPEPAPVRVDPRRIDVVLGNL 398

Query: 126 AHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-SHD 180
              +L  GG  VT++V+ S +    ++   G        P  F +    +          
Sbjct: 399 VANALHHGGPPVTVAVRVSDDRVRVTVTDRGPGIPDDALPYVFDRFYKADAARPRSGGSG 458

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +        A  +   L          V +  L +
Sbjct: 459 LGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 493


>gi|330975744|gb|EGH75810.1| sensor histidine kinase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 468

 Score = 35.6 bits (81), Expect = 4.0,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRVELLEDEQLQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I   D+  ++E  +        + RV            +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVDLNALLECLVEPWLLADGNGRVTQQGEAHAAYSGKPLALKRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D  + + F L ++      PE+  + V       +     Q 
Sbjct: 375 ---DNALKYGHRAHLKVED--DAHAFVLHVDDEGPGVPEQRLEHVF-EPHFRLAGSQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|239908597|ref|YP_002955339.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798464|dbj|BAH77453.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 571

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 77/221 (34%), Gaps = 41/221 (18%)

Query: 24  HDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLA------------ 70
           HD+++P+  +    ELL+ E  +  +  +L+R ++ S    L  +RLA            
Sbjct: 356 HDLVTPLSGLIGIPELLETEENLTPQQRELLRHAATSGRRMLATIRLAGDLARMEKGTYH 415

Query: 71  --------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL--- 119
                    G        +      + +   +++D R       E    +R  A +L   
Sbjct: 416 VAKADCDVLGIIRDARVNLDKLFAVKGLAFAVSLDGRPA---GAEDRAPARGDANLLGNL 472

Query: 120 -LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVE 173
             NL   A  + P+GG+V + ++  +       +   +       F + V      G   
Sbjct: 473 FENLLKNAAEASPQGGEVAVDIRLPEGMVAVRNRGQVSPDIVDTFFEKYVTRGKTFGTGL 532

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T  +         L+A  +    + E+ +  +V +  LL 
Sbjct: 533 GTYSAR--------LIARAHGGDAVLELGEPDHVTVRVLLP 565


>gi|187930208|ref|YP_001900695.1| GAF sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
 gi|187727098|gb|ACD28263.1| GAF sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
          Length = 762

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 20/163 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSA--- 60
           ++ +L A   S + HD+ +P+  I    ELLDE+  +         +Q I  SS  A   
Sbjct: 520 ANHELEAFSYS-VSHDLRAPLRHIAGYAELLDEMEGQHVSARGRHFLQTISESSRFAGKL 578

Query: 61  -IIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AK 117
               L F ++  G     D  + L   +  V+ D      R  + W    + + R   A 
Sbjct: 579 VDDLLTFSQMGRGALHLTD--VDLAQLVRGVVRDLTPDQGRRHIEWDIATLPVVRADPAF 636

Query: 118 ILLNLFMVAHASL--PRG---GKVTISVQDSKNENIFSLKING 155
           + L +  +   ++   RG    ++ I  + +  E I  +  NG
Sbjct: 637 LQLAMRNLLSNAVKYTRGRDPARIHIDAEQTDAETIVRIADNG 679


>gi|5052340|gb|AAD38510.1|AF133262_2 histidine protein kinase-response regulator hybrid protein CvgSY
           [Pseudomonas syringae pv. syringae]
          Length = 671

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 19/145 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 305 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQDASKRAASLTHRL--LAFSRR 362

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I ++    V      ID  +     LLNL + 
Sbjct: 363 QTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWSTFIDAPQLE-NALLNLCIN 421

Query: 126 AHASLPRGGKVTISVQDSKNENIFS 150
           A  ++PRGG++TI   +   +   S
Sbjct: 422 ARDAMPRGGRITIETANRWTDERGS 446


>gi|146283794|ref|YP_001173947.1| hypothetical protein PST_3477 [Pseudomonas stutzeri A1501]
 gi|145571999|gb|ABP81105.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 762

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           L    L AL  L + I H+  + + ++   L+L + +       + I     SA    + 
Sbjct: 384 LQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRL 443

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR--ERAK-- 117
            R    ++ S  +     D+  +I         A+  RV ++    +       +  +  
Sbjct: 444 TRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTVLDPVQCE 503

Query: 118 -ILLNLFMVAHASLPRGGKVTISVQD 142
             +LNL + A  ++P GG + I++  
Sbjct: 504 LAVLNLAINARDAMPEGGPLVIALHQ 529


>gi|88855870|ref|ZP_01130532.1| two-component system, sensor protein [marine actinobacterium
           PHSC20C1]
 gi|88814737|gb|EAR24597.1| two-component system, sensor protein [marine actinobacterium
           PHSC20C1]
          Length = 449

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 28/217 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H++ +P+ A+   LEL        E +     S+ +++ RL    LA             
Sbjct: 235 HELRTPLAALKTQLELAHADFGNAEALASQLTSAEASVNRLT--SLASNLLELSRLETES 292

Query: 84  GDIEQVIED----FIAVDKRVQVSWTGEKIDL----------------SRERAKILLNLF 123
            + E    D    F+    R ++    +   +                ++   +++ NL 
Sbjct: 293 SEAETTAGDLIDEFMGSIDRARLLGMVKSAQVELDVTVGDESVTYGVAAQAFGRLIDNLL 352

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID--S 178
             A A++P GG+V  ++     +    ++  G        P  F +    +   T     
Sbjct: 353 SNALAAIPAGGEVVATLHQDSTQLQLDVRDTGPGMPDDFIPIAFDRFSRPDNSRTASTGG 412

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +A         E I+    V +  L K
Sbjct: 413 SGLGLALVHAIATAAHGSASVENIESGLRV-TVTLPK 448


>gi|26987749|ref|NP_743174.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida KT2440]
 gi|24982440|gb|AAN66638.1|AE016291_7 sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 484

 Score = 35.6 bits (81), Expect = 4.1,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 77/218 (35%), Gaps = 38/218 (17%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           + L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K   +
Sbjct: 284 SQLFSAISHDLRTPITRLRLRVELLEDERLQAKFSQDLDELELL---VKGALQCVKDTDI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
                      + L  + +++ +    D R+ V          +  A  + + NL     
Sbjct: 341 -----HENIEPVDLNQVLEILAEPYLGDGRITVEGQALAPYPGKPLALRRCIGNLI---D 392

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH-----DIQ 182
            ++  G +  + + D     +  +   G           +    +E   + H       Q
Sbjct: 393 NAIKYGERARLRIIDGAEGFVLQVDDQGP---------GVPQQQLEQVFEPHFRLAGQQQ 443

Query: 183 FYYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
            Y + L     +AH +   +    + +  + ++  L +
Sbjct: 444 GYGLGLGIARNIAHSHGGEVSLLNLREGGLRVTLYLPR 481


>gi|149916863|ref|ZP_01905364.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149822141|gb|EDM81532.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 719

 Score = 35.6 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLK----FMRLA 70
           LL S + HD  + +  I  + +LL     G   E+ + +   + +A   ++    F R  
Sbjct: 355 LLASGVAHDFNNILMGIMGAADLLTATSEGNTRELAETVVEGAETAASLIQRLLDFSRKG 414

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAH 127
                +VD    + D  +++E  +     +Q         +  +  ++   LLNL + + 
Sbjct: 415 QRVERAVDVHAVIRDTARLLERAVERRVEIQCRLEASSHTVRGDAHQLQSALLNLGVNSR 474

Query: 128 ASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTI 176
            ++P GG +     T+ V ++       +   G       E   + +DG+  + I
Sbjct: 475 DAMPEGGTLRFQTRTVVVGEAGLATRTGMLAAGAYLEISVEDTGEGMDGDTATKI 529


>gi|300087966|ref|YP_003758488.1| histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527699|gb|ADJ26167.1| histidine kinase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 298

 Score = 35.6 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 16/162 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIRL-KFMRLAFGYTGSVDS 79
           H++ +P+ AI  S EL  +    D  + L   I  ++ +   R  + + ++ G  G +  
Sbjct: 79  HELKTPLTAILASTELFVDELKNDRRLPLAQNIYQAAKNLDRRTDELLDVSRGEIGLLSV 138

Query: 80  LIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHA 128
                 I+ ++E+ I            D R ++S     + +  +R  ++L N    A  
Sbjct: 139 SPKTEQIKPLLENTIEILRPAAVRKNHDLRSEISDDLPPVAVDEDRLGQVLYNYLANAIK 198

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             P GG++ +     ++E I  +  NG     PE   ++ + 
Sbjct: 199 YTPAGGRIILRAFSRRDELIVEVTDNGPGI-TPEGQRRLFEP 239


>gi|218780262|ref|YP_002431580.1| multi-sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761646|gb|ACL04112.1| multi-sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 504

 Score = 35.6 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 19/155 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSMSAIIRLKFM-------RL 69
           +++ H++ SP+  I   L L+ +  +++   Q   L+  +       +  +       R+
Sbjct: 275 AKVSHELRSPLATIREQLALVIQGVVDEATEQEQYLLSRAKDKTQSLIDLIGDLLDVSRI 334

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRERAKILL------ 120
             G        + + ++   I DF+    +    ++  T     L + R   +       
Sbjct: 335 ECGNVAQQQVPLQVEELLSSIVDFMQAKAKAKNQELGVTLPASPLPKMRVDPMALESVFG 394

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           NL   A    P GG VT+ V   +     ++   G
Sbjct: 395 NLVANAINYTPEGGSVTVEVGGDEKAIQVTVADTG 429


>gi|4376185|gb|AAC61655.2| hybrid histidine protein kinase-phosphate acceptor regulatory
           protein CvgSY [Pseudomonas syringae pv. syringae]
          Length = 600

 Score = 35.6 bits (81), Expect = 4.2,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 20/194 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 234 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGAAQDASKRAASLTHRL--LAFSRR 291

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I V+    V      ID  +     LLNL + 
Sbjct: 292 QTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGLWSTFIDAPQLE-NALLNLCIN 350

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++PRGG++TI   +   +E     +            +    G     I+     F+
Sbjct: 351 ARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCVSDTGTGMSPEVINRAFDPFF 410

Query: 185 YVILLAHENKIRLL 198
               L     + L 
Sbjct: 411 TTKPLGQGTGLGLS 424


>gi|330957621|gb|EGH57881.1| sensor histidine kinase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 398

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 31/215 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI  S ELL     +++ +Q+   I  S   A       L F R   G+   
Sbjct: 183 HDLRNPLFAITASAELLQRHTPDEKTLQIARHILTSGKRASQLVDDVLDFARGRMGH--- 239

Query: 77  VDSLIGLGDIEQV---IEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125
               + + D E +   +E  ++  +RV             E+I    ER A++L NL   
Sbjct: 240 -GIPLSIHDAEGLDNTLEHVVSEIQRVYPSRLIESGIGRLERIRCDHERIAQLLSNLV-- 296

Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDI-- 181
              ++  G     + V       +F L +       PE     +       + D+     
Sbjct: 297 -SNAITHGDADSPVQVAAEVQGELFLLSVTNQGEPIPECVRSRLFQPYSRPVTDAPQAGL 355

Query: 182 --QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               Y    +A  +   L      +   + +  + 
Sbjct: 356 GLGLYIASEIALAHGGTLSVCSTREQGTIFTFSMP 390


>gi|307634983|gb|ADI84948.2| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 388

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGSV 77
           HD+I+ +G +H    LL E  GI  E     +   +    RL        +L     G  
Sbjct: 178 HDVINTVGGLHGIAALLAEGKGISPEKEAEYKEWMVHLSNRLIDEINHHRKLLAAEKGEF 237

Query: 78  DSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
              +G+ D++Q+  +         IA  +R+ +    E   +S  +   +IL NL   A 
Sbjct: 238 RPDLGMVDVQQLAREVQALYVNHDIAQGRRLVLGPLAELTIVSDLQILRRILGNLVKNAL 297

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYV 186
            + P GG VTI+ +   +   F++   G +   PE   QI   +  +       I  Y V
Sbjct: 298 EATPEGGTVTIAARQEGDGVSFTVHNPGLI--PPEVQLQIFQRSFSTKEGTGRGIGTYSV 355

Query: 187 ILLAHEN-KIRLLPEIIDDHNVVLSALLEK 215
            L      K  +     +      +A   +
Sbjct: 356 RLFGERYLKGTITFTSTEREGTTFTASFPR 385


>gi|282861007|ref|ZP_06270073.1| histidine kinase [Streptomyces sp. ACTE]
 gi|282564743|gb|EFB70279.1| histidine kinase [Streptomyces sp. ACTE]
          Length = 528

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 16/166 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           H++ +P+ AI    E+L++            + L+   +      +    +  R   G  
Sbjct: 282 HELRTPLTAITAVAEVLEDEADSLDPMIAPAVHLVVSETRRLNDLVENLMEVTRFDAGTA 341

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133
             V   + + D      D  A    V +    E+  ++R +  ++ + L  +   +L  G
Sbjct: 342 RLVLDTVDVADQVTACIDARAWLDAVDLD--AERGLMARLDPRRLDVILANLIGNALKHG 399

Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST 175
           G  V ++V+   +E    ++ +G        P  F +    +    
Sbjct: 400 GSPVRVAVRADDDELTIEVRDHGPGVPEEVLPHVFDRFYKASASRP 445


>gi|86361238|ref|YP_473125.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86285340|gb|ABC94398.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
          Length = 623

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 10/130 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78
           + HD  + +  I  +LE++++      +  ++R +  +A     L    LAFG       
Sbjct: 260 LAHDFNNLLTVISGNLEMIEDKLPPGSLRDILREAQAAAQDGAILTGQLLAFGRRQPLNP 319

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
               LG +     D +     + +++S   +  DLS      +    +LN+ + A  ++P
Sbjct: 320 KHADLGQLVTGFADLLRRTLGEDIKLSTIIDGSDLSVLVDSSQLQNAILNIALNARDAMP 379

Query: 132 RGGKVTISVQ 141
           +GG +T ++ 
Sbjct: 380 KGGSLTTTIS 389


>gi|152966751|ref|YP_001362535.1| integral membrane sensor signal transduction histidine kinase
           [Kineococcus radiotolerans SRS30216]
 gi|151361268|gb|ABS04271.1| integral membrane sensor signal transduction histidine kinase
           [Kineococcus radiotolerans SRS30216]
          Length = 501

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 32/213 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           H++ +P+  +   LELLD     D  +   L+          +    L           +
Sbjct: 275 HELRTPLTIVQGHLELLDVDDPRDVTDTRDLVLDELSRMTRLVD--DLTLLAKARRPDFV 332

Query: 82  GLG--DIEQVIEDFI-----------AVDKRVQVSWTGEKIDLSRERAKILLNLF----- 123
            L   +  ++++D              V++R +V+   +   L++   +++ N       
Sbjct: 333 TLQAVEAGRLLDDVYDKVVPLGERQWRVEERAEVTVQADGQRLTQAVLQLVSNAVKFTRP 392

Query: 124 --MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
             ++A  S  RGG++ + V+DS           G+L R  E+F +   G     ++   +
Sbjct: 393 GDLIALGSAVRGGELHLRVRDSGPGI-----AAGDLDRIFERFGRAETGR---GVEGSGL 444

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +A  +  R+            + +L 
Sbjct: 445 GLSIVTAIAEAHGGRVDVSSAPGLGSSFAVVLP 477


>gi|237799140|ref|ZP_04587601.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021995|gb|EGI02052.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 693

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 21/139 (15%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+ +   +    ++     +  S++     L    LAF    S
Sbjct: 319 IAHDFNNLLAGISGSLELITKRLSQGRAGEVDRYLSVAQSAVRRAASLTHRLLAF----S 374

Query: 77  VDSLIGLGD--IEQVIEDFIAVDKR-----VQVSWTGEKIDLSR--ERAKI---LLNLFM 124
               +   +  +  +I+D   +  R     + +    +        + A++   LLNL +
Sbjct: 375 RRQTLSPKETDVNALIKDMQELITRSVGPEIDIKVVAQNDLWPALIDHAQLESSLLNLCL 434

Query: 125 VAHASLPRGGKVTISVQDS 143
            A  ++P GG++ I   ++
Sbjct: 435 NARDAMPNGGRILIETANA 453


>gi|182436429|ref|YP_001824148.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464945|dbj|BAG19465.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 509

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 69/207 (33%), Gaps = 17/207 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           H++ +P+ AI    E+L++       +    + L+   +      +    +  R   G  
Sbjct: 283 HELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVSETRRLNDLVENLMEVTRFDAGTA 342

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133
             V   + + D      D  A    V +    E+  + R +  ++ + L  +   +L  G
Sbjct: 343 RLVLDTVDVADQVTACIDARAWLDAVNLD--AERGMMVRLDPRRLDVILANLIGNALKHG 400

Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188
           G  V + V+    E +  ++ +G        P  F +    +      +   +     + 
Sbjct: 401 GSPVDVRVRTEGEELVIEVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIALE 460

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLEK 215
            AH +   +      D   V    L +
Sbjct: 461 NAHIHGGDITAANSPDGGAVFELRLPR 487


>gi|153007202|ref|YP_001381527.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030775|gb|ABS28543.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 514

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 17/210 (8%)

Query: 22  ICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF----GY 73
           I HD+ +P+ AI+N   LL    ++    +     +  S       ++ +  A     G 
Sbjct: 294 ISHDLRTPLNAIYNQAHLLRRYPNDAARVEARAAAVLKSCERMSAMIQDLVEATLLEDGQ 353

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVAH 127
                  + L      + +       V         DL R  A      +I++NL   A 
Sbjct: 354 LQISPEPVDLAAAVPELLERFHGAIDVDRVRLVVHPDLPRALADPQRLERIVVNLLTNAL 413

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFY 184
              P  G+V + +  +       +   G        P  F +          +   +  Y
Sbjct: 414 KYSPPQGEVVLELAPAPEGVAIVVTDRGVGIAPEDVPHVFDRFFRARGARQPEGLGLGLY 473

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               L   +  R+              +L 
Sbjct: 474 ITRHLVQAHGGRIEVSSRLGQGSTFRVVLP 503


>gi|217419465|ref|ZP_03450971.1| sensor histidine kinase [Burkholderia pseudomallei 576]
 gi|217396769|gb|EEC36785.1| sensor histidine kinase [Burkholderia pseudomallei 576]
          Length = 627

 Score = 35.6 bits (81), Expect = 4.3,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91
           +D   +  +++ LI  S   A+ R++        F R     +G   +   L    +   
Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442

Query: 92  DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     E   L        + +++ +NL + A  S+   G +TI      +
Sbjct: 443 NVVHNELKYKADIVLEYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203
               S+   G      +   +I D    +            I   +   +  R+  E   
Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 561

Query: 204 DHNVVLSALLE 214
                L+  L 
Sbjct: 562 GRGSTLTVTLP 572


>gi|294146511|ref|YP_003559177.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292676928|dbj|BAI98445.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 670

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 18/152 (11%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM--RL-AFGYTGSVDSL 80
           HD  + +  I  SL+LL   G+  +  + +   ++ +  R K +  RL AF         
Sbjct: 323 HDFNNLLTPIVGSLDLLHRRGLGTDRERRLIEGALQSADRAKMLVQRLLAF--ARRQPLQ 380

Query: 81  IGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAKI------LLNLFMVAHAS 129
               DI  ++ D           RVQV     +  L    A        LLNL + A  +
Sbjct: 381 PTAIDIGGLVRDMRDLIVSTSGPRVQVELAVAEG-LPAAHADANQIEMALLNLAVNARDA 439

Query: 130 LPRGGKVTISVQDSKNENIFSLKI-NGNLARF 160
           +P GG++ I V          L++  G   R 
Sbjct: 440 MPDGGQLRIGVTCDSMAADNRLRLREGRYVRL 471


>gi|283851241|ref|ZP_06368524.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573410|gb|EFC21387.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 457

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 15/156 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           + + I HD+  P+  I + LE+         +   + ++ +  I    M+    L   + 
Sbjct: 240 VSNNIAHDLRGPLNRIRSGLEMSLARIRTEEEYRAVLEQTIAEIDGLLMTFNALLTIAQA 299

Query: 70  AFGYTGSVDSLIGL----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
             G      + + L    GD+ ++ E                 + +   R   ++ L NL
Sbjct: 300 ESGARRQDFTDVDLTGLAGDVAELYEPLAEEKDLAFHVALAPGVTVPGNRHLLSQALANL 359

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              A    P GG +T+++         ++   G   
Sbjct: 360 LDNAVKYTPAGGAITVTLGAPSTGPELAVADTGPGI 395


>gi|149278397|ref|ZP_01884534.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149230767|gb|EDM36149.1| two-component system sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 444

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 21/156 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRL 69
           L S + HD+  P+ +I   LE+L+ +G+E+E  QLI        R +S   +  L + + 
Sbjct: 225 LFSIVAHDVRMPLSSIQGYLEILNGIGLEEEEKQLIEGQLLQITRDTSEMLMNLLSWSKA 284

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL--------- 120
                  +   +   D+   + D++ V+K +          L+  +  I+          
Sbjct: 285 ---QLNGMSIKLKPMDVNATLRDWLKVEKSIAAKKGIRLAILTAGQLNIMADHDMLHLVV 341

Query: 121 -NLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            NL   A    P GG+V IS +  ++  +  +  NG
Sbjct: 342 RNLVSNALKFTPEGGEVVISTRYRESNGVIVISDNG 377


>gi|118591973|ref|ZP_01549367.1| probable two-component sensor histidine kinase protein [Stappia
           aggregata IAM 12614]
 gi|118435269|gb|EAV41916.1| probable two-component sensor histidine kinase protein [Stappia
           aggregata IAM 12614]
          Length = 484

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEV---MQLIRLSSMS----AIIRLKFMR---LA 70
           + H++ + IG I  SL LL+ + G  D     +  IR ++      A   L   R     
Sbjct: 263 LSHEVGNTIGIITGSLGLLERDGGFSDRQARNIARIRKAADRGRSLASSMLTIGRQQPAN 322

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-SRERAKILLNLFMVAHAS 129
               G    L G+ DI ++         ++++  +   + L      + +LNL + + A+
Sbjct: 323 LSRIGMSSLLRGMADILEIAIGE-KCSLKLELDDSLPPLVLDPELFEQSVLNLCLNSAAA 381

Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155
           +P GG+V +S   + +  + S++  G
Sbjct: 382 MPDGGEVRVSTFSTGDAVVVSVRDTG 407


>gi|319791369|ref|YP_004153009.1| signal transduction histidine kinase with cheb and cher activity
            [Variovorax paradoxus EPS]
 gi|315593832|gb|ADU34898.1| signal transduction histidine kinase with CheB and CheR activity
            [Variovorax paradoxus EPS]
          Length = 1370

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 22/195 (11%)

Query: 24   HDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAII--------RLKFMRLAFGY 73
            H++  P+  I  + ELL       +   +Q +  +   A+          L   R+  G 
Sbjct: 1019 HELKQPLNLIQMNAELLMHLPAAAQIPAVQRVGETIKRAVASQTRIINDLLDLSRIRTGK 1078

Query: 74   TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWT---GEKIDLSRERAK---ILLNLFMVA 126
                   + LG+ ++ V +  +A   + ++       E +    +R +   I  NL   A
Sbjct: 1079 LRLSRVTVDLGELVQSVAQAAVADAPKKKLLLETHCDEAVHCHGDRVRVEQIAWNLLSNA 1138

Query: 127  HASLPRGGKVTISVQDSKNENIFSL--KINGNLARFPEKFTQIVD---GNVESTIDSHDI 181
                P GG++++ V+   +    ++     G  A F      + +   G+         I
Sbjct: 1139 VKFTPDGGRISVRVETEGDFARLTVADTGCGIAAEFLPHVFGMFNQADGDTALPNGGLGI 1198

Query: 182  QFYYVILLAHENKIR 196
                V  LA  +  R
Sbjct: 1199 GLALVQELALAHGGR 1213


>gi|297568632|ref|YP_003689976.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924547|gb|ADH85357.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 793

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 53/148 (35%), Gaps = 21/148 (14%)

Query: 42  EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFI 94
           +  +  + +Q I  S+  A    +  R    Y+      +   D+       ++++   I
Sbjct: 447 DDEVSQDYLQEILDSARRAA---ELTRSLLAYSRKQQIELKPEDLGKTVEKNQKMLRRII 503

Query: 95  AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQ-DSKNENIFS 150
             +  +++      + +  +  +I   L+NL   A  ++P GG++TI      K  +   
Sbjct: 504 RENIELKLELIDRPLPVMADHVQIEQVLMNLASNAQDAMPAGGRLTIGAGWQEKAPSELE 563

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS 178
           L   G        +  +   +    ID 
Sbjct: 564 LVTAGP-------WAVLTMADTGFGIDP 584


>gi|186474188|ref|YP_001861530.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gi|184196520|gb|ACC74484.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 815

 Score = 35.6 bits (81), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 15/177 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMRL-AFGYTG 75
           HD  + +  +  +LELL     +          ++ +   S  A   L F R  A     
Sbjct: 318 HDFNNVLQVLRGNLELLGARHDDAWSRSRIGRAIEAVERGSKLASHLLAFGRQQALQPAA 377

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK------ILLNLFMVAHAS 129
           S    + L ++E ++   +    RV++  +    +L            +LLNL + +  +
Sbjct: 378 SHLGHV-LHNMEDLLRRALGERVRVRIHESLGGGELWNVMVDTHQLENVLLNLAINSRDA 436

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           +P GG +T  + ++  +   +L        + +         +   +       +Y 
Sbjct: 437 MPEGGMLTFGLSNAVLDAKAALTAQIEPGEYVKMTVTDTGTGMSPDVAGRAFDPFYT 493


>gi|323528130|ref|YP_004230282.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1001]
 gi|323385132|gb|ADX57222.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. CCGE1001]
          Length = 494

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 17/205 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + ++I H+I +P GA+    E  L  +    +  ++ I        +++  +        
Sbjct: 282 MAAQIAHEIRNPAGAMRLKAENALAGDGARREAALRTIIEQVARIELQVTSLLALTQSVT 341

Query: 76  SVDSLIGLGD-IEQVIEDFIAVDK------RVQVSWTGEKIDL-SRERAKILLNLFMVAH 127
                + L   ++ +     +  +        +V+    +      + A+ L NL + A 
Sbjct: 342 VRPCEVDLRAWLDDIAHTHESRAESRHVTLGAEVAQNPTRPVFDPAQMARALDNLLVNAL 401

Query: 128 ASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
              P GG VT+    +V          +  NG   R P +  +I +  V    +   +  
Sbjct: 402 RHAPSGGNVTVRAYCAVAQGGERLRLEVIDNGAGVR-PAERERIFEPFVTGRPEGSGLGL 460

Query: 184 YYVILLAHENKIRLLPEIIDDHNVV 208
             V  +A  +  R    + +D NV 
Sbjct: 461 AVVREIASAHGGR--AYLAEDSNVT 483


>gi|218667716|ref|YP_002426712.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519929|gb|ACK80515.1| sensor histidine kinase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 423

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +LL + I HD+ SP+  +  + ELL +   +     +++         L    LA G   
Sbjct: 220 SLLLTGISHDLRSPLARLRMAWELLPDNTPQHLREGMLQD-IERMDALLA-QSLALG--R 275

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPR 132
            + + +   D+  ++ +  A  +R    W      +     +R  +   L  +   +L  
Sbjct: 276 GMSAKVADFDLMVLLAEVGADFEREGGHWQATLPRRYPFRGDREALRRLLSNLLDNALRY 335

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH------DIQFYYV 186
           GG   +  +  K +    L++       PE   + V        D+        +     
Sbjct: 336 GGG-RVRAEFQKTQGRTQLRLCDEGPGVPEADLETVFEPFIRLDDARGHGEGSGLGLAIA 394

Query: 187 ILLAHENKIRL 197
             LA    +RL
Sbjct: 395 RQLAEAQGMRL 405


>gi|71733597|ref|YP_274800.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71554150|gb|AAZ33361.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 652

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 289 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 348

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 349 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 406

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 407 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 463

Query: 183 FYYV 186
            ++ 
Sbjct: 464 PFFT 467


>gi|5019771|gb|AAD37857.1|AF133263_2 histidine protein kinase-response regulator hybrid protein CvgSY
           [Pseudomonas syringae pv. syringae]
          Length = 671

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 19/145 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 305 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQDASKRAASLTHRL--LAFSRR 362

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I ++    V      ID  +     LLNL + 
Sbjct: 363 QTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWSTFIDAPQLE-NALLNLCIN 421

Query: 126 AHASLPRGGKVTISVQDSKNENIFS 150
           A  ++PRGG++TI   +   +   S
Sbjct: 422 ARDAMPRGGRITIETANRWTDERGS 446


>gi|270261002|ref|ZP_06189275.1| hypothetical protein SOD_a02270 [Serratia odorifera 4Rx13]
 gi|270044486|gb|EFA17577.1| hypothetical protein SOD_a02270 [Serratia odorifera 4Rx13]
          Length = 488

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 18/155 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIE----------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           I HD+ +P+ ++H  LE L                +  +   R     A    +  RL +
Sbjct: 274 ISHDLRTPLTSLHGYLETLSVKSASLSENDRRRYLETALAQSRKVGKLAQELFELARLEY 333

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA---KILLNLF 123
           G          LG++ Q +         A  +R++         +  + +   ++L NL 
Sbjct: 334 GVVKPQKEPFSLGELVQDVFQKFELAAEARHQRLRADIAPGMPLVFADLSMIERVLTNLL 393

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             A    P+GG++ + +   +N+ +  +  +G   
Sbjct: 394 DNAIRHTPQGGEIGVRLWQQENKILVQVNDSGPGI 428


>gi|196231100|ref|ZP_03129960.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224930|gb|EDY19440.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 786

 Score = 35.6 bits (81), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 38/215 (17%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IRLSSMSAI----IRL 64
           + +A+L     H++ +P+ AI N++ L +  G +   ++L    I   + +        L
Sbjct: 422 EFLAMLG----HELRNPLSAIANAVRLWNVAGDDHSAVELAHGVIERQTDNLSRLVDDLL 477

Query: 65  KFMRLAFGYTGSVDSLIGLGD-IEQVIED--------------FIAVDKRVQVSWTGEKI 109
              R+  G        + + + I +V+E                +  D ++ V     ++
Sbjct: 478 DVARITEGKIELRKRPVDVNESIHRVVEALRPAIDQQRHELQLLLENDAKIWVDADPTRV 537

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQ 166
           +      +I+ NL   A     +GG++ I  +   +E + S+   G        P+ F  
Sbjct: 538 E------QIISNLLTNAIKYTRKGGEIRIEARREGHEAVISVNDTGIGIAPRMLPQIFDL 591

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLP 199
              G+  ++       I       L   +   +  
Sbjct: 592 FTQGDHSLDRPTGGLGIGLSLCRRLVELHGGTITA 626


>gi|320104996|ref|YP_004180587.1| histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319752278|gb|ADV64038.1| histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 312

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 26/221 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEV--GIED----EVMQLIRLSSMSAIIRLK---- 65
           A +   + H+I +P+  +  +L+LL E   G +       +  I        +RL+    
Sbjct: 53  ARIAGGLAHEIRNPLSTMRLNLDLLAEEFRGSDSIRDRRALTKIER-LRKETLRLQNVLE 111

Query: 66  -FMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            F+R A               V+ +    + +      +    RV          L  + 
Sbjct: 112 DFLRFAHLERIQPVDQPLAAVVNEVCDFWEPQAQAHGIVV---RVYHDPQPSCSPLDADL 168

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            K  +LNL + A  ++P GG++ +  + +   N+  +   G          ++ +    +
Sbjct: 169 FKQAILNLLLNAQQAMPDGGELMLITRRAGAWNVLEVVDTGVGI-PASLRDKVFEPFQTT 227

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  +   +  R+  E         +  L +
Sbjct: 228 KPGGSGLGLPMVRRIVEAHGGRIAFESEPGKGTKFTIWLPR 268


>gi|217970661|ref|YP_002355895.1| histidine kinase [Thauera sp. MZ1T]
 gi|217507988|gb|ACK54999.1| histidine kinase [Thauera sp. MZ1T]
          Length = 471

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 77/213 (36%), Gaps = 23/213 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           AL+ + + HD+ +P+  +   +E+      +DEV  ++        I  +F+    G   
Sbjct: 246 ALILAGVSHDLRTPLARLRLGIEM--SGAPDDEVTAMVADIGEMDRIIGQFLDFGRGDAQ 303

Query: 76  SVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL 130
              + I L     +V E +      V +     +    + RA    + L NL      +L
Sbjct: 304 EPTAAIDLATLAREVTEPYRLRG--VDLRLEVPESLFVQARALSIRRALANLI---DNAL 358

Query: 131 PRGG-----KVTISVQDSKNENIFSLKING----NLARFPEKFTQIVDGNVESTIDSHDI 181
              G     +VT+S++D +     + +  G     + R  + FT++      +      +
Sbjct: 359 RYAGGNAPLEVTVSIEDGQARIEVADRGPGIPESEIERMRQPFTRLEKARSNTK--GAGL 416

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +   ++ RL     D   +  +  L 
Sbjct: 417 GLAIVDRVMRAHQGRLELSARDGGGLRAALCLP 449


>gi|167523437|ref|XP_001746055.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775326|gb|EDQ88950.1| predicted protein [Monosiga brevicollis MX1]
          Length = 288

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 132 RGGKVTISVQDSKNENIFSLK-INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           RG  +T+S        +   +   G   RFP    +  D  +     +H I   Y    A
Sbjct: 194 RGADLTVSPVHRAGHGLVPGREAAGISLRFPRFIRERPDKTMSEATTAHQIVELYQQQFA 253

Query: 191 HENKIRLLPEIIDDHN 206
                RL+ +  D   
Sbjct: 254 PAASRRLVGDEADAER 269


>gi|240139593|ref|YP_002964069.1| putative sensor hybrid histidine kinase with two PAS and two
           response regulator receiver domains [Methylobacterium
           extorquens AM1]
 gi|240009566|gb|ACS40792.1| putative sensor hybrid histidine kinase with two PAS and two
           response regulator receiver domains [Methylobacterium
           extorquens AM1]
          Length = 622

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 38/224 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + AI  SLEL+     +   ++ +  ++  A  R        L F R     
Sbjct: 269 IAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNATGAAQRGSALTKRLLSFSR----- 323

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK------ILLNL 122
             S D+     D   +IE   A+        V V    E  D+             +LNL
Sbjct: 324 --SNDAHARPVDPNALIEGMSALFGSSLGGHVSVVRDLEP-DMPFALVDPDQLELAVLNL 380

Query: 123 FMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGNLARFPEKFTQIVDGNVE 173
            + A  ++P GG VTIS + ++                  +      PE   ++ +    
Sbjct: 381 CINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTGIPPEILERVCEPFFT 440

Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215
           +            ++  LA +   RL           +   L +
Sbjct: 441 TKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|222081551|ref|YP_002540915.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221726230|gb|ACM29319.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 674

 Score = 35.6 bits (81), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 24/158 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS----AIIRLKFMR 68
           + + + H+I +PI  +  +LE++      +        +LI              L+F +
Sbjct: 457 ITAGVAHEINNPIAVMQGNLEVIREVMGSDADNASTEFRLIDQQMHRISEIVTKLLQFAK 516

Query: 69  LA--------FGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-I 118
                     +   G V   + L   + +     +  + R         I +SR   + +
Sbjct: 517 PQEYSGYSEHYAAAGIVSDTLPLVQHLLKKTTIALEREDRA-----LRPIMMSRTELQQV 571

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           L+NL + A  ++P GG++T+   DS  +    + I   
Sbjct: 572 LVNLIVNAIHAMPNGGRLTLRTIDSDMDGQAGVAIQVE 609


>gi|300088098|ref|YP_003758620.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527831|gb|ADJ26299.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 407

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 15/150 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76
           H++ +P+  +  S E+L ++   +  ++L   I   +++   R    L F R   G    
Sbjct: 191 HELKTPLTPMIASGEVLLDILEGENELRLAGNIYRGAINLERRINDLLDFARGEMGVLKV 250

Query: 77  VDSLIG-----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128
               +      L    +V   F    + +++        +S +  ++   LLNL   A  
Sbjct: 251 TRQPLDISPILLDLAAEVSPQFDRKQQSLELCLPDRLPAVSADEDRLRQILLNLLTNAGK 310

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             PRGG++ I  +   N    S+  NG   
Sbjct: 311 FTPRGGQIIIGAKVDGNMLQLSVADNGRGI 340


>gi|190575962|ref|YP_001973807.1| putative sensor histidine kinase two component transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|190013884|emb|CAQ47522.1| putative sensor histidine kinase two component transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 347

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDL-SRERAKILL-- 120
             R A G      +L    ++ +  +  + + + +R+QV W  ++         +++L  
Sbjct: 197 LFRAALGAGEGDSTLRDECELAERYLSIESLRLGERLQVRWERDEPLPWDLPLPRLVLQP 256

Query: 121 ---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
              N  +   + LP GG + + +    NE    ++      + P        G+ + +I 
Sbjct: 257 LVENAVLHGISRLPEGGTIELQLVREGNELQIRVRNPAPDPQAPGLALARGAGHAQHSIA 316

Query: 178 SHDI 181
              +
Sbjct: 317 HRLV 320


>gi|307330574|ref|ZP_07609714.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
 gi|306883730|gb|EFN14776.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
          Length = 556

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 69/205 (33%), Gaps = 15/205 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           H++ +P+ AI    E+L+E            +QL+   +      +    +  R   G  
Sbjct: 289 HELRTPLTAITAVSEVLEEEADSLDPMIAPAVQLVVSETRRLNDLVENLMEVTRFDAGTA 348

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
             V   + + D      D  A    V++      I    +  ++ + L  +   +L  GG
Sbjct: 349 RLVLDDVDVADQVTACIDARAWLDAVELD-AARGIVAPLDPRRLDVILANLIGNALKHGG 407

Query: 135 K-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVILL 189
             V +SV+   +E +  ++ +G        P  F +    +      +   +     +  
Sbjct: 408 SPVRVSVRTDGDELLIKVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAMEN 467

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
           AH +   +      +   V +  L 
Sbjct: 468 AHIHGGDISAANSPEGGAVFALRLP 492


>gi|239832007|ref|ZP_04680336.1| Nitrogen regulation protein ntrB [Ochrobactrum intermedium LMG
           3301]
 gi|239824274|gb|EEQ95842.1| Nitrogen regulation protein ntrB [Ochrobactrum intermedium LMG
           3301]
          Length = 371

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITDETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ + ++  A   R    +      +   R    ++ L
Sbjct: 194 ---SDERPIERSAVNIHAVLDHVKAIAKNGFARKIRFVEDYDPSLPPVFANRDQLVQVFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 251 NLLKNASEAIGEREGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|194292695|ref|YP_002008602.1| senson histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193226599|emb|CAQ72550.1| putative SENSOR HISTIDINE KINASE with CHASE2 domain [Cupriavidus
           taiwanensis LMG 19424]
          Length = 805

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 32/222 (14%)

Query: 22  ICHDIISPIGAIHNSLELLD-----------EVGIEDEVMQLIRLSSMSAIIR----LKF 66
           + HD+ SP  +I   +EL +           +   +  V+  I   +   +      +  
Sbjct: 581 LSHDMRSPQASILALIELQERRAGHAATSAGDGAPDSGVLARIAAHARRTLALADDFISV 640

Query: 67  MR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKI 118
            R     LAF        ++   D    +    A +  +Q+    +   L        + 
Sbjct: 641 ARAESKALAFIEVELGGLVLDATDQLWALAR--AREVSLQIDLPDDPAVLQGEPALLVRA 698

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK------INGNLARFPEKFTQIVDGNV 172
           + NL   A    P GG VT+S+       + +++       + + AR  E F ++ +G  
Sbjct: 699 IANLVSNAIKFSPAGGTVTVSLAREPERFVVAVQDHGPGIADADQARLFEPFARLHEGQP 758

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +    V  +A  +  +           V    L 
Sbjct: 759 -GAPEGTGLGLVLVRAVAERHGGQASVRSQAGMGAVFRIELP 799


>gi|170749966|ref|YP_001756226.1| histidine kinase [Methylobacterium radiotolerans JCM 2831]
 gi|170656488|gb|ACB25543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 539

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 27/186 (14%)

Query: 22  ICHD-------IISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           I HD       I+  +  +   LE  D          + IR ++  A    + + LAF  
Sbjct: 170 IAHDFNNLLQVIVGYVDILAAGLEKPDADRARLGRATENIRQAAERATTLTQQL-LAF-- 226

Query: 74  TGSVDSLIGLGDIE--QVIEDFIAVDKR-------VQVSWTGE----KIDLSRERAKILL 120
             +    +    +    +IE    +  R       V++    +    ++D ++     +L
Sbjct: 227 --ARKQRLDGRAVNLNTLIEGMGEMVARSVGEAVKVELDLAPDLWNCRVDPTQAEV-AIL 283

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           N+ + A  ++P GG V IS ++S+  +           R+     +     +   + +  
Sbjct: 284 NVLINARDAMPEGGTVRISTENSEVASRGREIGPLRDGRYVSIAIKDTGTGIPPAVLARV 343

Query: 181 IQFYYV 186
           +  ++ 
Sbjct: 344 MDPFFT 349


>gi|145593183|ref|YP_001157480.1| integral membrane sensor signal transduction histidine kinase
           [Salinispora tropica CNB-440]
 gi|145302520|gb|ABP53102.1| integral membrane sensor signal transduction histidine kinase
           [Salinispora tropica CNB-440]
          Length = 369

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 26/213 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS---L 80
           H++ +P+  I   LE  ++    D+    ++    +   RL   RLA        +    
Sbjct: 154 HELRTPLATIEAYLEAAEDGVAVDDED--LQSVLRAQTDRLH--RLADDIAAVSRAETHQ 209

Query: 81  IGLGDIEQVIEDFIAVD--------------KRVQVSWTGEKIDLSRERAKILLNLFMVA 126
           + L  +     D +                  R  +  + +     +   ++L NL   A
Sbjct: 210 LDLHPVRTAPGDLVRDAVAAAWPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLDNA 269

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV--DGNVESTIDSHDI 181
               P GG VT+ V         ++   G        P  F +    D   +       I
Sbjct: 270 LRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHIFERFYRVDTARDRGNGGSGI 329

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +   +  R+  E +     ++  +L 
Sbjct: 330 GLAIVRAVVSAHGGRVRAENVPGGGAMVKVVLP 362


>gi|46579345|ref|YP_010153.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448759|gb|AAS95412.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233171|gb|ADP86025.1| histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 391

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 19/208 (9%)

Query: 24  HDIISPIGAIHN--SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           HD+++  G + +   L + D        M L+   + + +  +   R+      + +  +
Sbjct: 172 HDLLNMAGGLRSISGLLVEDVPLDVRADMLLVHRYATALVEEILAQRV-LVAAENDELGV 230

Query: 82  GLGD--IEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128
            L D    +V+ D I         +DKR+ +   G  + +S +R    ++L NL   A  
Sbjct: 231 ELRDVQAREVLRDVIELYRTHEACIDKRLVMEPCGGHLLISTDRVLLARVLGNLVKNALE 290

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           + PRGG VT   + + +   F +   G ++  PE   Q+   +  +      +  Y V L
Sbjct: 291 ASPRGGVVTAGCEATPSGVTFRVHNAGFIS--PEVRAQMFQRSFSTKGQGRGLGMYGVRL 348

Query: 189 LAHEN-KIRLLPEIIDDHNVVLSALLEK 215
           L       R+      D    L  +L +
Sbjct: 349 LTGNYLGGRVECLSSRDSGTTLLVILPR 376


>gi|289676946|ref|ZP_06497836.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae FF5]
          Length = 394

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++  Q+++    S   A       L F R   G+   
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKAQQVVQHILTSGQRASQLVDDVLDFARGRMGH--- 239

Query: 77  VDSLIGLGDI---EQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125
               + + +    ++ +E  I+  +RV             E+I    ER A++L NL   
Sbjct: 240 -GIPLSIHEAPGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 296

Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179
              ++  G  +  + V    +  +F L +       PE     +       I        
Sbjct: 297 -SNAISHGDAESPVEVTAGVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  Y    +A  +   L      +   V +  + 
Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390


>gi|218295265|ref|ZP_03496101.1| histidine kinase [Thermus aquaticus Y51MC23]
 gi|218244468|gb|EED10993.1| histidine kinase [Thermus aquaticus Y51MC23]
          Length = 722

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 70/192 (36%), Gaps = 18/192 (9%)

Query: 24  HDIISPIGAIHNSLEL-LDEVGIEDEVMQLI---RLSSMSAIIRLKFMRLAFGYTGSVDS 79
           H+I +P+ ++  +LEL L+  G+ +E  +L+     S+      L+  +        V  
Sbjct: 100 HEIKNPLMSVLGALELALETEGLPEEAKELLQIAEKSARRIQELLQKAQDYLKLGQGVRL 159

Query: 80  LIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHA 128
            +   D++ +++              +  R+ + W    +   R+   + +LN+   A  
Sbjct: 160 KVERVDLKALLQQAAEEVRPLARRKRIALRLTLPWGEAWVYGDRDWLYQAILNVLSNAVK 219

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYY 185
             P GG+V + +   ++    ++   G      E    F      +    ++   +    
Sbjct: 220 YTPEGGRVAVRLLLGRDRYGIAVADTGPGIPKEEQDKVFEPFYRASTRGEVEGTGLGLAL 279

Query: 186 VILLAHENKIRL 197
           V  +   +   +
Sbjct: 280 VKRVLEAHGGEV 291


>gi|146281504|ref|YP_001171657.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri A1501]
 gi|145569709|gb|ABP78815.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri A1501]
          Length = 678

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIR----LKFM 67
           L S + HD  + +G I  SL LL+    +     L R       S+  A       L F 
Sbjct: 307 LTSGLAHDFNNLLGGIVGSLGLLERRLDQGRHDDLRRHLANAQSSADRAAALTHRLLAFS 366

Query: 68  R---LAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           R   L    T     +  + D+ ++ I   +A +  +       + D ++    +LLNL 
Sbjct: 367 RRQPLQMRPTDGNALVSSMRDLLQRTIGPLVAFELMLADDLWLTRCDANQLE-NVLLNLA 425

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKI 153
           + A  ++P GG++ IS  + + ++  + ++
Sbjct: 426 LNARDAMPNGGRLRISTANRELDDAAAARL 455


>gi|160896897|ref|YP_001562479.1| anti-FecI sigma factor FecR [Delftia acidovorans SPH-1]
 gi|160362481|gb|ABX34094.1| anti-FecI sigma factor, FecR [Delftia acidovorans SPH-1]
          Length = 440

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 6/128 (4%)

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S  +A+ R +      G T +     G       +     +       W   +  + + 
Sbjct: 171 DSVEAALRRWR------GETAAPAPRTGRRRALSTLLGMAGLGVGSPAIWLAWRQWMPQY 224

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           + ++      + +  LP G  +T+        + ++ +    L      F    D     
Sbjct: 225 QVRLATATGRLLNQPLPDGSSLTLDAASRAEVDFYATRRQVRLLAGSAFFAVARDTEWPF 284

Query: 175 TIDSHDIQ 182
            + + D+Q
Sbjct: 285 MVQAADVQ 292


>gi|39997287|ref|NP_953238.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984177|gb|AAR35565.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 395

 Score = 35.6 bits (81), Expect = 4.7,   Method: Composition-based stats.
 Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGSV 77
           HD+I+ +G +H    LL E  GI  E     +   +    RL        +L     G  
Sbjct: 185 HDVINTVGGLHGIAALLAEGKGISPEKEAEYKEWMVHLSNRLIDEINHHRKLLAAEKGEF 244

Query: 78  DSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
              +G+ D++Q+  +         IA  +R+ +    E   +S  +   +IL NL   A 
Sbjct: 245 RPDLGMVDVQQLAREVQALYVNHDIAQGRRLVLGPLAELTIVSDLQILRRILGNLVKNAL 304

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYV 186
            + P GG VTI+ +   +   F++   G +   PE   QI   +  +       I  Y V
Sbjct: 305 EATPEGGTVTIAARQEGDGVSFTVHNPGLI--PPEVQLQIFQRSFSTKEGTGRGIGTYSV 362

Query: 187 ILLAHEN-KIRLLPEIIDDHNVVLSALLEK 215
            L      K  +     +      +A   +
Sbjct: 363 RLFGERYLKGTITFTSTEREGTTFTASFPR 392


>gi|327482123|gb|AEA85433.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 743

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 12/146 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           L    L AL  L + I H+  + + ++   L+L + +       + I     SA    + 
Sbjct: 365 LQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRSARRATRL 424

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR--ERAK-- 117
            R    ++ S  +     D+  +I         A+  RV ++    +       +  +  
Sbjct: 425 TRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTVLDPVQCE 484

Query: 118 -ILLNLFMVAHASLPRGGKVTISVQD 142
             +LNL + A  ++P GG + I++  
Sbjct: 485 LAVLNLAINARDAMPEGGPLVIALHQ 510


>gi|260430745|ref|ZP_05784717.1| sensory box histidine kinase/response regulator [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418186|gb|EEX11444.1| sensory box histidine kinase/response regulator [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 631

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 61/169 (36%), Gaps = 14/169 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFM-RLA- 70
           + A + S + HD  S +  I   ++  L+++ + ++  +L+  +  +A    + + R+A 
Sbjct: 297 MAAQMTSGLAHDF-SNLLTIILGMQAKLEKMNLPEDAAELVAATQQTARRGGQLLNRIAD 355

Query: 71  -FGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNL 122
             G              L D+  +    +     + V        L          LLNL
Sbjct: 356 MTGNRTPQPQATDMRGLLEDLRVLASPSLPRGVGLSVVNNLPDEALMLDPGMVQDALLNL 415

Query: 123 FMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170
            + A  +    G++TIS     +     ++   G     P+   + ++ 
Sbjct: 416 VLNARDACGSSGQITISAHAIGRIWVEITVSDTGPGFS-PDALDKALNP 463


>gi|330810422|ref|YP_004354884.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378530|gb|AEA69880.1| putative Histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 397

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFGYTG 75
           HD+ SP+GAI  S E+L    D      ++   I  S   A       L F R   G   
Sbjct: 181 HDLRSPLGAILLSSEVLLRAGDLPAKATKITSRIYTSVKRANKIVGDLLDFTRTQLGSGI 240

Query: 76  SVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMVAH 127
            V      GD+    E  +   +        R + +   E         ++  NL   A 
Sbjct: 241 PVQRF--NGDLVAACEGMVEEARAYHPESEIRFETTGALEARFDPARMEQVFANLIGNAV 298

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGN 156
                G  VT+S+   K+  + ++   G 
Sbjct: 299 QHGAEGTPVTVSLSVEKDMAVIAINNQGK 327


>gi|262196464|ref|YP_003267673.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262079811|gb|ACY15780.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 2468

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 24   HDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI---IRLKFMRLAFGYTG 75
            H++ +P+ AI  + ELL       + ++     + R S+  A      L   R+  G   
Sbjct: 2110 HELRNPLAAIRGAAELLLLSDGGGDELERTRGIIERQSAHMAKLIDGLLDVSRVVLGKIV 2169

Query: 76   SVDSLIGLGDI-EQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILL---NLFMVAH 127
                ++ + +I   +++D     +R    +++   GE I +  +R ++     NL   A 
Sbjct: 2170 LDSKVVDVVEILRDLMQDHADRIERSGLSLRLDLPGEPIWIDGDRVRLTQIFGNLLANAL 2229

Query: 128  ASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKF 164
                  G +TIS +   S       +++    A    + 
Sbjct: 2230 QFTSAPGTITISAETIGSSPAGTALVRVRDTGAGIAPEL 2268


>gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 860

 Score = 35.6 bits (81), Expect = 4.8,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 30/220 (13%)

Query: 22  ICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLS---SMSAIIRLKFMRLA 70
           I H+  +P+ AI    E+L             E+    +   S          L      
Sbjct: 475 ISHEFRTPLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAE 534

Query: 71  FGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122
            G        + + +I       +  +F        VS   ++  L  +     +ILLNL
Sbjct: 535 AGNPALTIEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNL 594

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ-------IVDGNVEST 175
              A  + P GG +++ V+ + ++++  +   G     PE           ++ GN   +
Sbjct: 595 LSNAVKATPPGGSISVRVEANSDKHVLVVSDTGMG--VPEHLVDRMTDPFTVIGGNAYHS 652

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D   +    V  L   ++  L  E       VL A+   
Sbjct: 653 RDGKGLGLAIVKSLVQRHRGDLRIESRT--ASVLVAIEPD 690


>gi|330820977|ref|YP_004349839.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia gladioli BSR3]
 gi|327372972|gb|AEA64327.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia gladioli BSR3]
          Length = 359

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 55/144 (38%), Gaps = 5/144 (3%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           HD+ +P+  I    E+LD+  + D +   +   +      L   R   G   S   +   
Sbjct: 162 HDLRTPLTRIGLRSEMLDDTAMRDAMAGDLAEMNELVEASLACARTQSGGLESPRRVDAD 221

Query: 84  GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQ 141
              + +++++    + V++     +  ++   A  ++L+NL      +L  G  V + V+
Sbjct: 222 RMFDALVDNYHDAGRVVELDGRVGRPIVTCPHALRRVLMNLI---DNALRYGTDVRLRVR 278

Query: 142 DSKNENIFSLKINGNLARFPEKFT 165
                 + ++  +G      +   
Sbjct: 279 VEAQHLVLAVLDSGPGIAPSQLAA 302


>gi|317487320|ref|ZP_07946114.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316921419|gb|EFV42711.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 579

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 74/217 (34%), Gaps = 28/217 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGS 76
           I H++ +P+ ++  + +L+      DE M ++  +      RL     +FM +A     +
Sbjct: 364 ISHELKTPMQSLGLAADLMARRPGLDEEMSMLVETVGQDAARLRTVARQFMEIARMSPSA 423

Query: 77  VDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKIDLS-----RERAKILLNLFMV 125
           +  +    D+ + +         +A +   ++  +  + D+         A +L NL   
Sbjct: 424 LQLVPDTVDLVERVREWLIPFQLVARESGERLLLSMPETDIPVTIDTERFAWVLSNLVSN 483

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV--------DGNVESTID 177
           A      G  V I +   + + +  ++ +G     PE   ++          G  E  + 
Sbjct: 484 ALRVGSVGSTVRIVITQEEYDAVLRVEDDGPGI-PPELEARLFEPFSHGRTAGTREGLV- 541

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +   +          + + LL 
Sbjct: 542 --GLGLAITRDIVEAHGGVIRYARNPGGGAIFTVLLP 576


>gi|219850583|ref|YP_002465016.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219544842|gb|ACL26580.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 418

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 71/190 (37%), Gaps = 20/190 (10%)

Query: 37  LELLDEVGIEDEVMQLIRLSSM--SAIIRLKFMRLAFGYTGSVD-SLIGLGDIEQVIEDF 93
           L  LD  G +   +Q+I  ++   +   R +  R A     S+    + L +I ++  D 
Sbjct: 233 LLELDAEGEQRIDLQMIATAAEVGAMSAR-RLQRFA--QLESLHIQPVDLVEIARLAIDT 289

Query: 94  ----IAVDKRVQVSWTGEKIDLSRERAKILL----NLFMVAHASLPRGGKVTISVQDSKN 145
               +A    + ++ +   + ++     +L      L + A  + P GG + +    S  
Sbjct: 290 ATHKLAHHAALTITESLSTLPVAAGETNLLYTALTALIVAAAQANPDGGVIQV---GSGF 346

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           +  F      +    P+    +   ++++   +H I+       A  +  +L  E+    
Sbjct: 347 DERFVWIEVADPGLPPDS--DLHSVSIQTQ-RAHTIELAIARQTARVHGGQLQIEVNTLR 403

Query: 206 NVVLSALLEK 215
             V+  ++ +
Sbjct: 404 GTVIRLMIPR 413


>gi|108761462|ref|YP_635109.1| response regulator/sensor histidine kinase AsgD [Myxococcus xanthus
           DK 1622]
 gi|108465342|gb|ABF90527.1| response regulator/sensor histidine kinase AsgD [Myxococcus xanthus
           DK 1622]
          Length = 773

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 31/219 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKF--MRLAF 71
           + HD+ +P+ AI  S  LL++ G   E  + +      A  R        L F   RL  
Sbjct: 558 VSHDLRNPLAAISMSAGLLEKKGALTEPQKRMVWRIGQATERAARMIRDLLDFTKARLGG 617

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKIDLSRERAKILLN 121
           G      +      + QV+++ +           V   V+  W  ++I      A++L N
Sbjct: 618 GIALHRQTTDLREVVHQVVDELLVANPGRRVEVEVQGEVRGEWDSDRI------AQVLTN 671

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDS 178
           L   A A  P    V +  +      + S+   G        P  F  +  G ++    +
Sbjct: 672 LLGNALAYSPADAPVRVDTRLEGEAALLSVFNGGAPIPRELLPRLFEPLTRGALKEGQST 731

Query: 179 HDI--QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I    Y V  +   +   +     + H    +  L +
Sbjct: 732 RSIGLGLYIVQDIVRGHGGGVEVVSSEQHGTTFTVRLPR 770


>gi|297197901|ref|ZP_06915298.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
 gi|197717156|gb|EDY61190.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
          Length = 518

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 61/213 (28%), Gaps = 19/213 (8%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLS----SMSAIIRLKFMRL 69
            + + H++ +P+ A+    ++LDE            ++LI       +      ++  R 
Sbjct: 296 AADVSHELRTPLAAMSAVTDVLDEDAARLDPDTATAVRLISEETVKLARLVDDLMEISRF 355

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVA 126
             G        I L +   +     +      V       D  R      ++ + +  + 
Sbjct: 356 DAGAAVLHLDEIDLAE--SIRRTLASRGWTDTVETDLPPPDAVRGSVDPRRLDVVVANLV 413

Query: 127 HASLPRGGK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVES-TIDSHDI 181
             +L  GG+ V + +       +  ++ +G        P  F +    +      +   +
Sbjct: 414 GNALKHGGRPVRVRLSAGDAVAVIEVRDSGPGIPAHVLPHVFERFYKSDTARIRSEGSGL 473

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +   +          V +  L 
Sbjct: 474 GLAITAENVRIHGGTVHAANHPAGGAVFTVELP 506


>gi|163746333|ref|ZP_02153691.1| two-component sensor histidine kinase protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380218|gb|EDQ04629.1| two-component sensor histidine kinase protein [Oceanibulbus
           indolifex HEL-45]
          Length = 509

 Score = 35.6 bits (81), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 22/150 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA------IIRLK-FMRLAFGYT 74
           I HD  + +  +  +LELL+      +   LI  +  +A        RL  F R     +
Sbjct: 147 IAHDFNNLLTVVIGNLELLEMSETAAKSGALISDALEAAEVGADLTSRLMVFAR----KS 202

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
                +I L          +       ++         W  +      + A  +LN+ + 
Sbjct: 203 TLNAEVIDLNAEVSKAVAMLNRTIGAHITVETAFADDLWQAKVDATQLQTA--VLNIALN 260

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155
           A  ++P GGK+T+  ++ + ++ +  +  G
Sbjct: 261 AQDAMPSGGKITLETRNMQLDDTYVAQEIG 290


>gi|320324588|gb|EFW80665.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320328960|gb|EFW84959.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330890761|gb|EGH23422.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 676

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|289628474|ref|ZP_06461428.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
          Length = 676

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|239833815|ref|ZP_04682143.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239821878|gb|EEQ93447.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 462

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 59/183 (32%), Gaps = 14/183 (7%)

Query: 42  EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFI--AVDK 98
             GI+   MQL    S  A   L   R   G        + L +  +Q++E     A D+
Sbjct: 282 LAGIKSTAMQL----SRLAGQLLTLSRAEPGSRRPRADRVDLAEAGQQILESLAGKAFDR 337

Query: 99  RVQVSWTG----EKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
           ++ +          I       + +++NL   A    P GG VT+ +    ++    ++ 
Sbjct: 338 KIDLGLELKAKKPIISGDGTMLREMIVNLVDNALTYTPEGGTVTLVIDQDGHKIKLRVED 397

Query: 154 NGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG        E   +       +  D   +    V  +A      +         + ++ 
Sbjct: 398 NGPGIPVSEYEHVFERFYRVPGTLADGSGLGLAIVREVADAAGGDVSLSETKGGGLTVTV 457

Query: 212 LLE 214
            L 
Sbjct: 458 TLP 460


>gi|227822197|ref|YP_002826168.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227341197|gb|ACP25415.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 861

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQL--IRLS 56
           MA+    N         L   I HD  + + AI  S +  LL     +     L  I+ +
Sbjct: 460 MAQTQKMNAVGT-----LAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRN 514

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTG 106
           +  A + ++ + LAF    ++   +      +GD+  +++     + +V+V      W  
Sbjct: 515 ANRAAVLVRQL-LAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPV 573

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
                  E+   LLNL + A  ++P GG +T+  ++
Sbjct: 574 RTDLGQFEQV--LLNLAVNARDAMPDGGTITLRTRN 607


>gi|117926290|ref|YP_866907.1| periplasmic sensor signal transduction histidine kinase
           [Magnetococcus sp. MC-1]
 gi|117610046|gb|ABK45501.1| periplasmic sensor signal transduction histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 629

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ILLNL   A  ++P GG + +          F ++ +G
Sbjct: 519 ILLNLMQNALHAMPHGGSLRVGTSRGNGRVAFVVEDSG 556


>gi|330869968|gb|EGH04677.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 676

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|293394380|ref|ZP_06638680.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291423358|gb|EFE96587.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 490

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 60/177 (33%), Gaps = 20/177 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIE----------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           I HD+ +P+ ++H  LE L                D  +   R     A    +  RL +
Sbjct: 274 ISHDLRTPLTSLHGYLETLSLKSAALTEAERLRYLDTALAQSRKVGRLAQELFELARLEY 333

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA---KILLNLF 123
           G          LG++ Q I         A D+R+          ++ + A   ++L NL 
Sbjct: 334 GVVKPQKEPFSLGELVQDIFQKFELAAEARDQRLLADIQPGIPLVNADLAMIERVLTNLL 393

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
             A    P  G++T+ +     + +  +  +G     P++    +         +  
Sbjct: 394 DNALRHTPNSGEITVRLWRQAQQVMVQVSDSGPG--IPQELRADLFERPSVLYSARR 448


>gi|289646786|ref|ZP_06478129.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 2250]
          Length = 676

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|168698717|ref|ZP_02730994.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 526

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERA------KILLNLFMVAH 127
           S   ++ L ++   +   +A     R+ V        + R RA      ++L+NL + A 
Sbjct: 219 SRPEVLDLNEVVSELGGLLARLIGNRIAVRTELAPEPV-RVRADRGHLEQVLMNLAVNAR 277

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING 155
            ++P GG + I+   ++     ++   G
Sbjct: 278 DAMPDGGTLRIATGLAEQFAKLTVADTG 305


>gi|84686866|ref|ZP_01014750.1| multisensor hybrid histidine kinase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665063|gb|EAQ11543.1| multisensor hybrid histidine kinase [Rhodobacterales bacterium
           HTCC2654]
          Length = 800

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 20/135 (14%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIED-EVMQLIRLSSMSAIIR----LKFMRLAFGYT 74
           HD  + + AI    +LL    D    ED   ++ I  +S  A       L F R      
Sbjct: 398 HDFNNLLTAISGHCDLLLLRHDNPDDEDFPDLKQISQNSNRAAALVGQLLAFSR----KQ 453

Query: 75  GSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAH 127
                +I L D    +   +     + + + +  ++         R+  ++++NL + A 
Sbjct: 454 TLRPDVIDLADSMADLVHLLGRLVGETITLDYLHDQDIRPVRADKRQLEQVVMNLVVNAR 513

Query: 128 ASLPRGGKVTISVQD 142
            ++P GG + + V +
Sbjct: 514 DAMPGGGTIRLEVHN 528


>gi|115522263|ref|YP_779174.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516210|gb|ABJ04194.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 832

 Score = 35.6 bits (81), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 21/143 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIR----LKFMRLAF 71
           I HD  + +  I  SL+L+     +     L R       S+  A       L F R   
Sbjct: 467 IAHDFNNLLTGIVGSLDLMQVRLSQGRTDNLARYIEAAMTSANRAAALTHRLLAFAR--- 523

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SRERAKILLNLFM 124
                V   +    +   +ED +       +       D          +    LLNL +
Sbjct: 524 -RQPLVPKPVDANQLVISLEDLLRRTIGETIDLEVVAGDRLWATLCDPNQLESALLNLAI 582

Query: 125 VAHASLPRGGKVTISVQDSKNEN 147
            A  ++P GG++TI+  +++   
Sbjct: 583 NARDAMPGGGRLTIATSNARVGG 605


>gi|304394996|ref|ZP_07376880.1| integral membrane sensor signal transduction histidine kinase
           [Pantoea sp. aB]
 gi|304357249|gb|EFM21612.1| integral membrane sensor signal transduction histidine kinase
           [Pantoea sp. aB]
          Length = 438

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 12/169 (7%)

Query: 1   MAKNICFNLSSMD--LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M + +   L      L A     I HD+ +PI  I    E++ E  +  +++Q +   + 
Sbjct: 220 MQQRMSAYLKERMQILAA-----ISHDLQTPITRIRLRSEMMSETDVRSKLLQDLEEMTR 274

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
                + + R +         +     I+ ++ D+    ++V +         +R  A  
Sbjct: 275 LIREGVAYARTSESSDEKPCRIQPHAFIDSLVCDYQDTGQQVTLQGKLHGSFSTRPHALR 334

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           + L NL      +L   G   + V+    +   ++   G      E + 
Sbjct: 335 RTLSNLI---DNALKFAGSAEVVVEQDAGQITIAVLDRGPGIPPEEMYA 380


>gi|260566346|ref|ZP_05836816.1| NtrB protein [Brucella suis bv. 4 str. 40]
 gi|260155864|gb|EEW90944.1| NtrB protein [Brucella suis bv. 4 str. 40]
          Length = 380

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 30/214 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
             R A      V+    L  ++ +  +  A   R    +      +   R    ++ LNL
Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252

Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177
              A  ++    GG++ +S   +       L++ G   R   P +F    +G+ V   + 
Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGSGVPQDML 309

Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
            H    +           + L+ +II DH  ++ 
Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|153006988|ref|YP_001381313.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            sp. Fw109-5]
 gi|152030561|gb|ABS28329.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            sp. Fw109-5]
          Length = 1519

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 27/166 (16%)

Query: 13   DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSSMSAI----I 62
             L AL  L + + H++ +P+G I NSL     LL   G    ++ ++   +         
Sbjct: 1292 RLAALGELSAVVAHEVRNPLGVIFNSLGSLRRLLRPAGDAKLLLDIVGEEADRLNRIVGD 1351

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSR 113
             L F R         D  +    +E+V+E+ I          V+    V      + +  
Sbjct: 1352 LLDFAR-------PSDPQLRPERLERVVEEAIHTALAQNPQGVEVSRDVDPELPAVPIDA 1404

Query: 114  ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
               +  ++N+ + A  ++PRGG++T+ V+         ++  G   
Sbjct: 1405 RLVRQAVINVAVNAIQAMPRGGRLTVRVRREDGTAALDVEDTGPGI 1450


>gi|117168588|gb|ABK32253.1| Amb5 [Sorangium cellulosum]
          Length = 508

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 21/212 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSS----MSAIIRLKFMRLAFGYT 74
           HD+ +P+ A+  S+ +LD   +         M L+              L   ++     
Sbjct: 282 HDLRNPLSALRMSVHVLDLDSLPPASSVRRTMALVGRQVDRLERMVGDLLDASQIEACKL 341

Query: 75  GSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL- 130
                   L D+ Q   D    ++ +  +++S     + +  +  +I   L  +   +L 
Sbjct: 342 ELRVEERDLRDLAQEAVDLYRPVSPEHPIELSLPETPVLVPCDATRIAQVLNNLLSNALK 401

Query: 131 --PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQF 183
             P GG++ ++V+   +    +++  G     P +   + +      +   +I    +  
Sbjct: 402 YSPAGGQIDVAVRAGGDGAEIAIRDRGLGI-EPAELAHLFEPFRRLKSSSGSIPGTGLGL 460

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +   +  RLL E       V    L +
Sbjct: 461 TVAKRIVEAHGGRLLVESRPGAGSVFRIDLPR 492


>gi|104781515|ref|YP_608013.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95110502|emb|CAK15210.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 428

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 27/175 (15%)

Query: 5   ICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED------EVMQ- 51
           + FN     + A L  R      I HD+ +PI  +   +E +D+   ++      + M+ 
Sbjct: 209 VAFNALQARIAAYLKERMQLLAAISHDLQTPITRMKLRVEQMDDGLEKEKLSHDLDAMEH 268

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKID 110
           L+R     A             +      + L   ++ ++ D+     +V    + +   
Sbjct: 269 LVREGVAYARS--------MDSSTEAPCRVNLDAFLDSLVFDYQDSGAKVDRQGSAQATL 320

Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +R  A  ++L+NL      +L   G   + V+  +      +  +G      E 
Sbjct: 321 ETRPHALRRVLVNLV---DNALKFAGAAHLEVRHEQGVTQIRVLDDGPGIPADEL 372


>gi|17549416|ref|NP_522756.1| two component transmembrane sensor kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17431669|emb|CAD18346.1| probable two component transmembrane sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 431

 Score = 35.6 bits (81), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 11/144 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYTGSVDSL 80
           I HD+ +P+  +    E+L +          I     S    + +F+  A    G    +
Sbjct: 228 IAHDLKTPLSRLRLRAEMLTDPKASAG----IERDVDSMSAIVDQFLAYAQSGDGEARDV 283

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
           +    +  +++ F    K V +          +     +I++NL      +   G +  +
Sbjct: 284 MVDRHLRGLVQPFAEQGKHVALELRAGDRFRLKPTYLERIVVNLL---DNAFAYGAE-PV 339

Query: 139 SVQDSKNENIFSLKINGNLARFPE 162
            V  + +E  F L +  + A  P+
Sbjct: 340 RVTTAADERSFMLTVEDHGAGIPQ 363


>gi|319787473|ref|YP_004146948.1| integral membrane sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465985|gb|ADV27717.1| integral membrane sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 479

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 54/171 (31%), Gaps = 33/171 (19%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H++ SP+ AI  + ELL E   E E              R +F R      G +   I  
Sbjct: 268 HEMKSPLAAIRGAAELLQEPLPEPE--------------RQRFARSILEQQGRLTETIDK 313

Query: 84  GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS 143
                     +A+ +  Q  W        RE   +   L  VA A+ PR       ++  
Sbjct: 314 ---------LLALAEVEQHGW-----LQRREAVDLGALLGEVATAAEPR--LAGAGLELQ 357

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194
                  L+  G+     +    +VD  +        +Q   + L A    
Sbjct: 358 LELPPQPLRAEGDGFLLRQALANLVDNALAFAPRGSTVQ---LSLGAEAGG 405


>gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
 gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
          Length = 1215

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 21/39 (53%)

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            ++ +NL   A  ++P GG + ++V+   +  +  ++  G
Sbjct: 1097 QVFINLLKNAIEAMPNGGTIEVTVERDGDHVVIRVRDEG 1135


>gi|262194642|ref|YP_003265851.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262077989|gb|ACY13958.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1759

 Score = 35.6 bits (81), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 59/168 (35%), Gaps = 20/168 (11%)

Query: 13   DLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQ--LIRLSSMSAI---IRL 64
            + +A+L     H++ +P+ AI  + ELL        E   MQ  L R +   A      L
Sbjct: 1387 EFLAMLG----HELRNPLAAIRTASELLRRKLGGNPEFTRMQEVLDRQTLHMAKLLDGLL 1442

Query: 65   KFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               R+  G       L+ L  I +     + E        ++     E + +  +R ++ 
Sbjct: 1443 DISRIIRGKIRLESELLDLRKIVREVTSDLREGMTDRQLEIRADIPPEPLLVEADRVRLA 1502

Query: 120  L---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                NL   A    P GG + I++     +    L++         + 
Sbjct: 1503 QIVNNLLSNAVKYTPDGGAIHITLSHDSGDGTVVLEVKDTGVGIEAEL 1550


>gi|331015208|gb|EGH95264.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 468

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 36/217 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELL++   +       + ++L+      A+  +K      
Sbjct: 266 LFSAISHDLRTPITRLRLRIELLEDEQQQRKFSRDLDELELL---VKGALQCVK------ 316

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLNLF 123
                +   I    +  ++E  +        D RV      +     +  A  + + NL 
Sbjct: 317 --DTDIHENIEPVHLNALLECLVEPWLTADGDGRVTQQGEAQAAYPGKPLALMRCIGNLI 374

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                +L  G +  + V+D     +  +   G     PE+  + V       +  +  Q 
Sbjct: 375 ---DNALKYGHRAHLKVEDDAQAFVLHVDDEGPG--VPEQRLEHVF-EPHFRLAGNQQQG 428

Query: 184 YYVIL-----LAHENKIRLLPEIIDDHNVVLSALLEK 215
           Y + L     +AH +   +  + + D  + ++  L +
Sbjct: 429 YGLGLGIARNIAHSHGGEVSLQNLRDGGLRVTLYLPR 465


>gi|223936504|ref|ZP_03628415.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223894668|gb|EEF61118.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 874

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSMSAIIRLK----FMRLAFGYT 74
           I HD+ +    I  S+ LL     ++E   L+   + S+      +K    F R   G  
Sbjct: 506 IAHDLNNVFAPILMSVALLRMNMPDEESKDLLHTLQTSAQRGAELVKQVLSFARGVEGER 565

Query: 75  GSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
             V+ +  + +I  V+ D            +  + W         +  ++ LNL + A  
Sbjct: 566 IEVNPVHLMREILNVVRDTFPKSIVFNFLDKQDL-WNVTGD--PTQLHQVFLNLCVNARD 622

Query: 129 SLPRGGKVTISVQD 142
           ++P GG +T+ +++
Sbjct: 623 AMPNGGDLTLKLEN 636


>gi|330985287|gb|EGH83390.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 676

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|313202284|ref|YP_004040942.1| histidine kinase [Methylovorus sp. MP688]
 gi|312441600|gb|ADQ85706.1| histidine kinase [Methylovorus sp. MP688]
          Length = 539

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +  ++LLNL + A   LP GG++ +    +      ++  NG      ++
Sbjct: 432 PEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGIPEEQR 483


>gi|302187715|ref|ZP_07264388.1| GAF:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae 642]
          Length = 394

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++  Q+++    S   A       L F R   G+   
Sbjct: 183 HDLRNPLFAINASAELLLRRPLDEKARQIVQHILTSGHRASQLVDDVLDFARGRMGH--- 239

Query: 77  VDSLIGLGDIE---QVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125
               + + +     + +E  I+  +RV             E+I    ER A++L NL   
Sbjct: 240 -GIPLSIHEAHGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 296

Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179
              ++  G  +  + V    +  +F+L +       PE     +       I        
Sbjct: 297 -SNAISHGDAESPVEVTAGVHGEVFALSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 355

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  Y    +A  +   L      +   V +  + 
Sbjct: 356 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 390


>gi|257487867|ref|ZP_05641908.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331008574|gb|EGH88630.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 676

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGNIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|322419866|ref|YP_004199089.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126253|gb|ADW13813.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 663

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMR--LAFG-YTGSVDS 79
           HD  + +  I     +L     E+    +L+   +++A    +  R  LAF         
Sbjct: 308 HDFNNVLTVIAGYANILKMDIPEESAQHELVEQIAVAAERAAQLTRGLLAFSRKQAMAPQ 367

Query: 80  LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLPR 132
              LG++   +E F+     + +Q+        L       +  ++L+NL   A  ++P 
Sbjct: 368 RTDLGEVVHRVEQFLTRVIGEDIQLKTELLPEPLPVLVDFGQIEQVLINLAANARDAMPD 427

Query: 133 GGKVTISV-QDSKNENIFSLKINGNLARF 160
           GG  TI+               +G  A  
Sbjct: 428 GGVFTIATGLYDPEGAGHHASASGRRAVI 456


>gi|254000326|ref|YP_003052389.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253987005|gb|ACT51862.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 559

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +  ++LLNL + A   LP GG++ +    +      ++  NG      ++
Sbjct: 452 PEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGIPEEQR 503


>gi|242279338|ref|YP_002991467.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122232|gb|ACS79928.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 16/144 (11%)

Query: 85  DIEQVIEDFIA------VDKRVQVSWTGEKIDLSRER-----AKILLNLFMVAHASLPRG 133
           DI ++++  +A        K+++V        LS         ++ LNL   A  ++   
Sbjct: 156 DINKLLKGMLALVDEEVGGKKIKVVRDIPSGALSVNTDPPLLRQVFLNLLKNAIQAVGHR 215

Query: 134 GKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           G++ IS +    + +  +  NG      + P  FT           +   I     + + 
Sbjct: 216 GEIVISSRREGGKVVVRVADNGVGIAEDKLPHIFTPFFTTKSPE--EGTGIGLAVSLRII 273

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
           ++    +  E       V S  + 
Sbjct: 274 NQLGGTIDVESSVGKGTVFSVAIP 297


>gi|148559647|ref|YP_001259039.1| nitrogen regulation protein NtrB [Brucella ovis ATCC 25840]
 gi|148370904|gb|ABQ60883.1| nitrogen regulation protein NtrB [Brucella ovis ATCC 25840]
          Length = 380

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ +  +  A   R    +      +   R    ++ L
Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL------ARFPEKFTQIVDG 170
           +I+LNL   +    P GG++++++ +++    F++   G        AR  + F QI   
Sbjct: 534 QIMLNLLSNSAKFTPAGGRISVALTETEETICFAVADTGRGIPADQIARLGQPFEQIAT- 592

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   + +   +    V  LA  +   +  +        ++  L K
Sbjct: 593 DAALSKEGTGLGLALVRSLAELHGGSMAIDSELGVGTTVTVTLPK 637


>gi|86360302|ref|YP_472190.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86284404|gb|ABC93463.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 645

 Score = 35.3 bits (80), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           I HD  + + A+  SLE+L +   +D  +  L+  +   A     L    LAF  +   +
Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346

Query: 79  SLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKI-LLNLFMVAHA 128
            L+   D+  ++   + +  R                  I     + ++ +LNL + A  
Sbjct: 347 LLMEPIDVSGLVRGMMDILSRSLGPLTTIETSFPVRLPTILTDPNQLEMAILNLVVNARD 406

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG++ +   +            G   R         +G    T++     F+    
Sbjct: 407 AMPSGGRIVLRASEESIAAGKGPLSAGRYVRI--AVIDEGEGMDTKTLEQAVTPFFTTKG 464

Query: 189 LAHENKIRLL 198
           +     + L 
Sbjct: 465 VGKGTGLGLS 474


>gi|298487171|ref|ZP_07005220.1| Sensory box sensor histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158195|gb|EFH99266.1| Sensory box sensor histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 676

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSA--IIRLKFMRLAFGYTGS 76
           I HD  + +  I  SLEL+        +  L   I L   SA     L    LAF    S
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRLARGSIEDLNSLIDLGVTSANRAAALTHRLLAFSRRQS 372

Query: 77  VDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
           +DS  + +  +   +++ +       +          WT E      +    LLNL + A
Sbjct: 373 LDSKPVEMNHLVNAMDELLQRSVNESIHLQLRMASDLWTAEAD--PNQLESALLNLVLNA 430

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDIQ 182
             ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S    
Sbjct: 431 RDAMPDGGTLVVETFNQQLDRSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAFD 487

Query: 183 FYYV 186
            ++ 
Sbjct: 488 PFFT 491


>gi|302526265|ref|ZP_07278607.1| hypothetical protein SSMG_02647 [Streptomyces sp. AA4]
 gi|302435160|gb|EFL06976.1| hypothetical protein SSMG_02647 [Streptomyces sp. AA4]
          Length = 469

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 68/208 (32%), Gaps = 17/208 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAI----IRLKFMRLAFG 72
           + H++ +P+ A+    ++LD           E ++L+   + +        ++  R   G
Sbjct: 261 VSHELRTPLAAMTAVTDMLDAEAKRLPDPAGEAVRLVSQETHNLTRLVNDLIEVTRFDSG 320

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                   + + +  +        +    +          R    I+ NL      +L  
Sbjct: 321 TASLEVDDVDVAEAVRATLRVRGFEVETDLPDGIRARIDPRRLDVIVANLV---GNALRH 377

Query: 133 GGK-VTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVE-STIDSHDIQFYYVI 187
           G + VT+ ++  +     +++ +G        P  F++    +   S  +   +      
Sbjct: 378 GAEPVTVRLRGDQAGITLAVEDSGPGLDEEVLPHVFSRFYKADTARSRSEGSGLGLAIAW 437

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
             A  ++  L+     +   V +  L +
Sbjct: 438 ENARLHRGELVAGNRPEGGAVFTLWLPR 465


>gi|219848910|ref|YP_002463343.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219543169|gb|ACL24907.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 1016

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 29/151 (19%)

Query: 13  DLVAL--LCSRICHD----IISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRL 64
            L AL  L S + HD    + S +G +   L    +  +++    ++L  +   + I RL
Sbjct: 649 RLRALGELSSGVAHDFNNLLASILGHVQLLLNEYHDPRLQEGLRAIELAAIDGAATIKRL 708

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWTGEKIDL- 111
           +          S  +  G  D+ QV+E+ +A+ +             ++V    E + + 
Sbjct: 709 QGF-----AQTSQSTPQGAVDLNQVVEESLALTRPRWRDEAQSRGIVIEVRTDLEPLPII 763

Query: 112 --SRERAK-ILLNLFMVAHASLPRGGKVTIS 139
                  + +++NL + A  +LP GG +TI 
Sbjct: 764 TGDAPALRELIINLVLNAIDALPNGGTITIR 794


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1131

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 12/170 (7%)

Query: 9    LSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK 65
            L S  L ++  + + I H+I +P+ AI N+L L L    + +   + + ++         
Sbjct: 904  LRSEKLASVGRMAATIAHEINNPLEAITNTLFLALHAQDLPESAREYLEMADGELRRVAH 963

Query: 66   FMRLAFGY--TGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGE--KIDLSRERA 116
              R A G+    +    I L  +     D +    R     V+  W G+     ++ E  
Sbjct: 964  ITRQALGFYRESNAPRQIALNAVMDSTLDLLKNRIRTKNVTVEKQWDGDVHAEAVAGEMR 1023

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            ++  NL   +  ++  GG + + +   +N +   + I  +       F +
Sbjct: 1024 QVFSNLLQNSLDAVDEGGAIKVRISTIRNGSAVRVTIADSGKGIEANFRE 1073


>gi|148256630|ref|YP_001241215.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146408803|gb|ABQ37309.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 936

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSAIIRLKFMRLAFGYTG-SVD 78
           HD  + +  I  S+ +L E   +   +     LI  S+     RL    LAF        
Sbjct: 577 HDFNNILTVITGSIGILAESVADRPELASLAKLIDDSADR-GARLTQQLLAFARKQPLQP 635

Query: 79  SLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
           + I +  +     D +          +R+        +    + A  ++NL + A  ++P
Sbjct: 636 ADIDVNALLVETADLLRPTLGEQIEIERILADDPCTALADPDQLATAIVNLALNARDAMP 695

Query: 132 RGGKVTISVQD 142
           +GGK+T+   +
Sbjct: 696 QGGKLTLETAN 706


>gi|299133243|ref|ZP_07026438.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298593380|gb|EFI53580.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 441

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 16/154 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYTGS 76
           H++ +PI A+    E LD   + ++    +      AI         L   R   G   S
Sbjct: 223 HELRTPITALSIQAENLDATALPEDARSRVEALKSGAIRTKHLLEQLLAMARQENGA--S 280

Query: 77  VDSLIGLGD-IEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKILLNLFMVAHASL-- 130
           ++  I +G+  +  + + I    R ++      GE I +  E+  I + L  +   ++  
Sbjct: 281 LNQKIEIGEIAKTAVINLIESSNRKEIDLGLEQGEPIQVCAEKITIEVLLRNIIDNAIKY 340

Query: 131 -PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            P+GGK+ I ++   +  + S++  G      E 
Sbjct: 341 TPKGGKIDIRLRRKNDLAVISVEDTGPGIVDDEL 374


>gi|153003758|ref|YP_001378083.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027331|gb|ABS25099.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 21/219 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRL-- 64
           + +L AL  + I H++ +P+ ++   L  L   G+ +    E +Q++R         L  
Sbjct: 234 AEELTAL-SAEIAHELKNPLASVK-GLAGLLAPGLPEGKAVERLQVLRREVDRMQAILDE 291

Query: 65  --KFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRER 115
              F R    LA G       L GL      + + +A ++ V +    E +      R+ 
Sbjct: 292 FLNFSRPLVPLALGDA----ELGGLCAEVAALHEGMARERDVAIVVRAEGVSARCDPRKV 347

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +IL+NL   A  + P   +V +              ++      P     +      + 
Sbjct: 348 KQILINLVQNALDASPARAQVEVEASLDPGGGARVRVLDRGRGVDPSLADALFSPGATTK 407

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       LA ++   L+             +L 
Sbjct: 408 PRGSGLGLTIARALARQHGGELVLAPRPGGGTAAELVLP 446


>gi|149915166|ref|ZP_01903694.1| PAS/PAC sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149810887|gb|EDM70726.1| PAS/PAC sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 669

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 20/185 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S I HD  + +  I ++LEL      + E  ++I  +  +A +   F R     T + 
Sbjct: 291 LASGIAHDSNNLLTVILSNLELALARTDDPEARRMIGTAVNAAEVNAGFNRRLLSLTCTR 350

Query: 78  DSLIGL---GDIEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKI--------LLNLFM 124
                +   G      +  +  A+  R+ ++   E         +         LLNL +
Sbjct: 351 GDTAAVLLIGAHLDATQPLLSHAIGDRISLTIAPEDGLWP---VRADPGDLDSALLNLAL 407

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDI 181
            A  ++  GG ++++ ++   +   + ++ G  AR  +      +     +   + +  +
Sbjct: 408 NARDAMQDGGALSVTARNVALDARHAARM-GPQAREGDFVCIKMRDSGTGMSDEVVAQAM 466

Query: 182 QFYYV 186
           + ++ 
Sbjct: 467 EPFFT 471


>gi|126732983|ref|ZP_01748743.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Sagittula
           stellata E-37]
 gi|126706555|gb|EBA05632.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Sagittula
           stellata E-37]
          Length = 640

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 60/170 (35%), Gaps = 26/170 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII----RLKFMR 68
           + + + H+I +P+  I  +L++L     D        + LI              L+F R
Sbjct: 421 ITAGVAHEINNPVAVIQGNLDVLRETLGDAAQPVQTEIDLIDGQVGRINAIVGKLLQFAR 480

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSR------ERAKI 118
                           D+  V+ D + + +    R  +    E  +  R      E  ++
Sbjct: 481 -----PDDFSGTERAVDLAPVVRDCLVLVEHVLTRADIRVETELDEAPRVAIGGGEMQQV 535

Query: 119 LLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           ++NL + A  ++   G +  T++ +        +L++       P+K   
Sbjct: 536 VINLVVNAVHAMEHSGTIFLTLNAEPRDGRPGAALRVRDTGPGVPDKLLD 585


>gi|73541976|ref|YP_296496.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ralstonia eutropha JMP134]
 gi|72119389|gb|AAZ61652.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Osmosensitive K+ channel His kinase
           sensor:UspA [Ralstonia eutropha JMP134]
          Length = 951

 Score = 35.3 bits (80), Expect = 5.3,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 18/222 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55
           +A+    ++ S  L + L + + HD+ +P+ ++    E L            + +  +R 
Sbjct: 697 VAQRALLSMESERLRSSLLAAVSHDLRTPLTSLIGMAETLQRGDPPLAPRVADTVSAMRD 756

Query: 56  SSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108
            +          L   RL               ++       +       RV V+   + 
Sbjct: 757 QARRMSTMVVNLLDMARLQGRDVRMQKEWQSFEELVGAALGALRDALVGHRVAVADLHKM 816

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
             +  +     ++L NL   A    P G ++ I  +   +E    ++ +G         +
Sbjct: 817 PLVECDAVLMDRVLCNLLENAAKYTPAGTEIRIRAEVVDDEVRLVVEDDGPGVPPGSERQ 876

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
            F +   G  ES      +       +   +  R+  E + D
Sbjct: 877 IFEKFTRGERESVTTGVGLGLAVCDAIVQAHGGRIWVEPVRD 918


>gi|307543661|ref|YP_003896140.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
 gi|307215685|emb|CBV40955.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
          Length = 697

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 23/181 (12%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVM----QLIRLSSMSAII- 62
           S  L A+  + + + H+I +P+  I  +L++    +G   + +     LI          
Sbjct: 471 SEKLAAVGEITAGVAHEINNPVAVIQGNLDVARQSLGSRVDEVATEFDLIDDQVHRISAI 530

Query: 63  ---RLKFMRLAFG-YTGSVDSLIGLG--DIEQVIEDFIAVDKRVQV---SWTGEKIDLSR 113
               L+F R   G ++GS + L+     D   V+   ++    V V     +   I + R
Sbjct: 531 ISKLLQFARP--GEFSGSANRLVPAEVIDDCLVLTRHLSSKAGVTVERDDRSMASILVER 588

Query: 114 ERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN---LARFPEKFTQIVD 169
              + +++NL + A  ++P GG +T+  +D   E +  + I          PE   +I D
Sbjct: 589 TELQQVIINLVVNAIHAMPEGGTLTLETEDRDVEGVPGVAIIVTDTGRGMMPEVLKRIFD 648

Query: 170 G 170
            
Sbjct: 649 P 649


>gi|306843983|ref|ZP_07476578.1| Nitrogen regulation protein ntrB [Brucella sp. BO1]
 gi|306275738|gb|EFM57462.1| Nitrogen regulation protein ntrB [Brucella sp. BO1]
          Length = 383

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 30/214 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
             R A      V+    L  ++ +  +  A   R    +      +   R    ++ LNL
Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252

Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177
              A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   + 
Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQDML 309

Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
            H    +           + L+ +II DH  ++ 
Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|302382232|ref|YP_003818055.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302192860|gb|ADL00432.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 355

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSMS----AIIRLKFMRL 69
           L S + H++  P+ AI N L+    L+    I+   +     S+      A   ++ +R 
Sbjct: 137 LASMVAHELNQPLSAILNFLDAATTLISRPEIDRAKITKYVESAAGQAERASDVIRRLRT 196

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDL-SRERA-KILLNL 122
                    S   + +I   I   + ++ R     + V    +   L  R +  +++LNL
Sbjct: 197 LMSRDTGFHSQANMAEIVDEILPILRINAREVDAILTVRIPPDGCALCDRVQVQQVVLNL 256

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              A  +   G +  + +   + +  + + +  N    PE     +
Sbjct: 257 VRNALDAPSDGQRRRVLISGDQTDQHYRVTVEDNGPGVPEAVAGGL 302


>gi|256061201|ref|ZP_05451353.1| Nitrogen regulation protein ntrB [Brucella neotomae 5K33]
 gi|261325209|ref|ZP_05964406.1| signal transduction histidine kinase [Brucella neotomae 5K33]
 gi|261301189|gb|EEY04686.1| signal transduction histidine kinase [Brucella neotomae 5K33]
          Length = 380

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 30/214 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
             R A      V+    L  ++ +  +  A   R    +      +   R    ++ LNL
Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252

Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177
              A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   + 
Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQDML 309

Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
            H    +           + L+ +II DH  ++ 
Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|213967057|ref|ZP_03395207.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|301385242|ref|ZP_07233660.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302063297|ref|ZP_07254838.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302130183|ref|ZP_07256173.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928379|gb|EEB61924.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 676

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + +  I  SLEL+           L         S+  A      + LAF    
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371

Query: 76  SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
           S+DS  + +  +   +++ +       +          WT E      +    LLNL + 
Sbjct: 372 SLDSKPVEINHLVDAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181
           A  ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S   
Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486

Query: 182 QFYYV 186
             ++ 
Sbjct: 487 DPFFT 491


>gi|153009401|ref|YP_001370616.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561289|gb|ABS14787.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ochrobactrum anthropi ATCC 49188]
          Length = 374

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITDETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ + ++  A   R    +      +   R    +I L
Sbjct: 194 ---SDERPIERSAVNIHAVLDHVKAIAKNGFARKIRFVEDYDPSLPPVFANRDQLVQIFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 251 NLLKNASEAIGDREGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|119896364|ref|YP_931577.1| putative sensor histidine kinase [Azoarcus sp. BH72]
 gi|119668777|emb|CAL92690.1| putative sensor histidine kinase [Azoarcus sp. BH72]
          Length = 728

 Score = 35.3 bits (80), Expect = 5.4,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 61/159 (38%), Gaps = 24/159 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS----AIIRLKFMR 68
           L + + H+I +P+  I  +LEL+      +     + +  I              L+F R
Sbjct: 461 LTAGVAHEINNPVAVIQGNLELVRELLGGDSAPVADELAQIDAQVGRIHGIVTKLLQFAR 520

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGE---KIDLSRERAK-I 118
                 G         D   ++ D + +        R++V+   +    ++++R   + +
Sbjct: 521 -----PGDFAGYTEQVDASGLVGDCLLLTRHNLSRGRIEVTTALDARGTVEINRGELQQV 575

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           L+NL + A  ++P GG++ +S  D           +G  
Sbjct: 576 LINLIVNAMQAMPDGGRLRLSTADIDEGGEDDDAGHGAG 614


>gi|86750880|ref|YP_487376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573908|gb|ABD08465.1| multi-sensor hybrid histidine kinase / cell cycle control histidine
           kinase CckA [Rhodopseudomonas palustris HaA2]
          Length = 874

 Score = 35.3 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-- 68
           MD +  L   I HD  + + AI  + + LL+     D   Q I     +A      +R  
Sbjct: 491 MDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNATRAATLVRQL 550

Query: 69  LAFG-YTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVS-------WTGEKIDLSRERAKI 118
           LAF         ++ LG+    I+  +     ++V +        W  +      E+   
Sbjct: 551 LAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKVSLEMQHGRDLWRVKADVSQFEQV-- 608

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ++NL + A  ++P GGK+ I   +        L   G
Sbjct: 609 IVNLAVNARDAMPDGGKLAIRTSNVPAAEAAQLAHKG 645


>gi|260428060|ref|ZP_05782039.1| sensory box sensor histidine kianse/response regulator [Citreicella
           sp. SE45]
 gi|260422552|gb|EEX15803.1| sensory box sensor histidine kianse/response regulator [Citreicella
           sp. SE45]
          Length = 755

 Score = 35.3 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 19/133 (14%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEV-MQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    + G  D   +  I  ++  A       L F R       
Sbjct: 394 HDFNNLLTAISGHCDLLLLRHDQGDPDYADLVQINQNANRAAALVGQLLAFSR----KQT 449

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
               ++ L D    +   +     ++VQ+S + + +  +     R+  ++++NL + A  
Sbjct: 450 LRPEVLDLRDTLSDLTHLLNRLVGEKVQLSLSHDPVLPTIRGDRRQLEQVMMNLVVNARD 509

Query: 129 SLPRGGKVTISVQ 141
           ++P GG++ I  +
Sbjct: 510 AMPDGGEIVIETE 522


>gi|209516225|ref|ZP_03265083.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia sp. H160]
 gi|209503336|gb|EEA03334.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia sp. H160]
          Length = 942

 Score = 35.3 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 31/237 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQL--- 52
           +A++   ++ S  L   L S I HD+ +P+ AI     LL + G      +    +L   
Sbjct: 661 IAQDALISMESERLRNSLLSAISHDLRTPLTAIVGFASLLAQPGHGEKAGQPAANELGEE 720

Query: 53  IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTG 106
           I   +M         L  +RL  G          L ++              R   +   
Sbjct: 721 IYDEAMRMTAIVTNLLDMVRLQEGSMRLNRQWSSLEEVIGAALAASRRLLSGRTLYTHVP 780

Query: 107 EKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN-------- 154
             + L +  A    ++L NL   A    P G  VTI+    +      +++N        
Sbjct: 781 TDLPLVQLDAVLMERLLANLLDNAAKYTPAGSPVTINAAAVEENGRRYVRVNVEDNGPGL 840

Query: 155 --GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             G  +R  +KFT+   G  ES +    +       +   +  ++        N  L
Sbjct: 841 SPGMESRVFDKFTR---GEKESALPGIGLGLAICRAIVEAHGGKISAANRTGPNGTL 894


>gi|37520141|ref|NP_923518.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211134|dbj|BAC88513.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 370

 Score = 35.3 bits (80), Expect = 5.5,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           +++ NL   A    PRGG+VT+ +  + +E    ++  G      +    F +       
Sbjct: 254 RVVANLVGNAINHTPRGGRVTVRLLRAPDEWRLLVEDTGTGIPPTDIRRVFERFYQAENT 313

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +  Y    +   +  R+          +    L  
Sbjct: 314 RHVPGTGLGLYLSRQIVEAHGGRIWAANRPGGGCLFGVSLPD 355


>gi|254487190|ref|ZP_05100395.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
 gi|214044059|gb|EEB84697.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
          Length = 742

 Score = 35.3 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 67/196 (34%), Gaps = 27/196 (13%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + + AI    +LL    D+   +   +  I  ++  A       L F R       
Sbjct: 381 HDFNNLLTAISGHCDLLLLRHDQGDPDFSDLVQINQNANRAAALVGQLLAFSR----KQT 436

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
                + + D    +   +     ++V ++ + + I        R+  ++L+NL + A  
Sbjct: 437 LRPETLNMRDTLADLTHLLNRLVGEKVTLTLSHDPILNPIRADKRQLEQVLMNLVVNARD 496

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----F 183
           ++P GG++ I  +        +      +   P K+  +   +    I +  +Q     F
Sbjct: 497 AMPSGGEIRICTETVDLTEGLT---RDRVTVPPGKYVTVQVADEGHGISADKLQKVFEPF 553

Query: 184 YYVILLAHENKIRLLP 199
           +          + L  
Sbjct: 554 FTTKRTGEGTGLGLST 569


>gi|17987148|ref|NP_539782.1| nitrogen regulation protein NTRB [Brucella melitensis bv. 1 str.
           16M]
 gi|161619070|ref|YP_001592957.1| nitrogen regulation protein ntrB [Brucella canis ATCC 23365]
 gi|225627590|ref|ZP_03785627.1| Nitrogen regulation protein ntrB [Brucella ceti str. Cudo]
 gi|225852619|ref|YP_002732852.1| nitrogen regulation protein ntrB [Brucella melitensis ATCC 23457]
 gi|254701861|ref|ZP_05163689.1| Nitrogen regulation protein ntrB [Brucella suis bv. 5 str. 513]
 gi|254706697|ref|ZP_05168525.1| Nitrogen regulation protein ntrB [Brucella pinnipedialis
           M163/99/10]
 gi|254714193|ref|ZP_05176004.1| Nitrogen regulation protein ntrB [Brucella ceti M644/93/1]
 gi|254717628|ref|ZP_05179439.1| Nitrogen regulation protein ntrB [Brucella ceti M13/05/1]
 gi|256044775|ref|ZP_05447679.1| Nitrogen regulation protein ntrB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113674|ref|ZP_05454485.1| Nitrogen regulation protein ntrB [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159845|ref|ZP_05457578.1| Nitrogen regulation protein ntrB [Brucella ceti M490/95/1]
 gi|256255091|ref|ZP_05460627.1| Nitrogen regulation protein ntrB [Brucella ceti B1/94]
 gi|256263889|ref|ZP_05466421.1| NtrB [Brucella melitensis bv. 2 str. 63/9]
 gi|260168822|ref|ZP_05755633.1| Nitrogen regulation protein ntrB [Brucella sp. F5/99]
 gi|260565622|ref|ZP_05836106.1| NtrB family protein [Brucella melitensis bv. 1 str. 16M]
 gi|261219465|ref|ZP_05933746.1| signal transduction histidine kinase [Brucella ceti M13/05/1]
 gi|261222285|ref|ZP_05936566.1| signal transduction histidine kinase [Brucella ceti B1/94]
 gi|261314158|ref|ZP_05953355.1| signal transduction histidine kinase [Brucella pinnipedialis
           M163/99/10]
 gi|261321961|ref|ZP_05961158.1| signal transduction histidine kinase [Brucella ceti M644/93/1]
 gi|261752424|ref|ZP_05996133.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261758309|ref|ZP_06002018.1| NtrB [Brucella sp. F5/99]
 gi|265991199|ref|ZP_06103756.1| signal transduction histidine kinase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995035|ref|ZP_06107592.1| signal transduction histidine kinase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998249|ref|ZP_06110806.1| signal transduction histidine kinase [Brucella ceti M490/95/1]
 gi|17982813|gb|AAL52046.1| nitrogen regulation protein ntrb [Brucella melitensis bv. 1 str.
           16M]
 gi|161335881|gb|ABX62186.1| Nitrogen regulation protein ntrB [Brucella canis ATCC 23365]
 gi|225617595|gb|EEH14640.1| Nitrogen regulation protein ntrB [Brucella ceti str. Cudo]
 gi|225640984|gb|ACO00898.1| Nitrogen regulation protein ntrB [Brucella melitensis ATCC 23457]
 gi|260151690|gb|EEW86784.1| NtrB family protein [Brucella melitensis bv. 1 str. 16M]
 gi|260920869|gb|EEX87522.1| signal transduction histidine kinase [Brucella ceti B1/94]
 gi|260924554|gb|EEX91122.1| signal transduction histidine kinase [Brucella ceti M13/05/1]
 gi|261294651|gb|EEX98147.1| signal transduction histidine kinase [Brucella ceti M644/93/1]
 gi|261303184|gb|EEY06681.1| signal transduction histidine kinase [Brucella pinnipedialis
           M163/99/10]
 gi|261738293|gb|EEY26289.1| NtrB [Brucella sp. F5/99]
 gi|261742177|gb|EEY30103.1| signal transduction histidine kinase [Brucella suis bv. 5 str. 513]
 gi|262552717|gb|EEZ08707.1| signal transduction histidine kinase [Brucella ceti M490/95/1]
 gi|262766148|gb|EEZ11937.1| signal transduction histidine kinase [Brucella melitensis bv. 3
           str. Ether]
 gi|263001983|gb|EEZ14558.1| signal transduction histidine kinase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094020|gb|EEZ17954.1| NtrB [Brucella melitensis bv. 2 str. 63/9]
 gi|326409137|gb|ADZ66202.1| nitrogen regulation protein ntrB [Brucella melitensis M28]
 gi|326538845|gb|ADZ87060.1| nitrogen regulation protein ntrB [Brucella melitensis M5-90]
          Length = 380

 Score = 35.3 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 30/214 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFM----- 67
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVFSDERP 198

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
             R A      V+    L  ++ +  +  A   R    +      +   R    ++ LNL
Sbjct: 199 IERTA------VNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFLNL 252

Query: 123 FMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VESTID 177
              A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   + 
Sbjct: 253 VKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQDML 309

Query: 178 SHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
            H    +           + L+ +II DH  ++ 
Sbjct: 310 PHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|85703883|ref|ZP_01034986.1| sensor histidine kinase [Roseovarius sp. 217]
 gi|85671203|gb|EAQ26061.1| sensor histidine kinase [Roseovarius sp. 217]
          Length = 476

 Score = 35.3 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 22/210 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGY 73
           L S + H+I +P+G + N+ + +       +   ++R S+      L+      R+    
Sbjct: 263 LSSSLAHEINNPLGGLLNATDTIRSYPDRPD---VVRQSADLLDRGLRHLRDVTRVTLDQ 319

Query: 74  TGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNL 122
                   GL      D++ +I+  +A   R+ + W  +    +          +I LNL
Sbjct: 320 NRIDPESRGLSADDFEDLKLLIQPEVARQ-RLDLDWCVDLAAPTVCSTPAGPVRQIALNL 378

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
            + A A+  + G+V + V    +     +   G           + DG +        + 
Sbjct: 379 LLNACAASGQSGRVGLHVSLQADALTLQVTNTGPDMPQAALDRLLADGPLS---PGGGVG 435

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              V  LA      +     DD  ++  +L
Sbjct: 436 LRLVRELARGLGGCVGHARPDDVTLITVSL 465


>gi|194367304|ref|YP_002029914.1| histidine kinase internal region [Stenotrophomonas maltophilia
           R551-3]
 gi|194350108|gb|ACF53231.1| histidine kinase internal region [Stenotrophomonas maltophilia
           R551-3]
          Length = 338

 Score = 35.3 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKI---DLSRERAKILL 120
             R A G      +L    ++ +  +  + + + +R+QV W  ++    DL     +++L
Sbjct: 188 LFRAALGAGEGDSTLRDECELAERYLSIESLRLGERLQVRWQRDEPLPWDLPLP--RLVL 245

Query: 121 -----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
                N  +   + LP GG + + +    NE    ++      + P        G+ + +
Sbjct: 246 QPLVENAVLHGISRLPEGGTIELQLVREGNELQIRVRNPAPDPQAPGLALARGAGHAQHS 305

Query: 176 I 176
           I
Sbjct: 306 I 306


>gi|28869904|ref|NP_792523.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28853149|gb|AAO56218.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 676

 Score = 35.3 bits (80), Expect = 5.6,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 26/185 (14%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + +  I  SLEL+           L         S+  A      + LAF    
Sbjct: 313 IAHDFNNMLTGIIGSLELIRRRVSRGHTEDLNSLVDLGVTSANRAAALTHRL-LAFSRRQ 371

Query: 76  SVDS-LIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
           S+DS  + +  +   +++ +       +          WT E      +    LLNL + 
Sbjct: 372 SLDSKPVEINHLVDAMDELLQRSVNESIHLQLRLAGDLWTAEAD--PNQLENALLNLVLN 429

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSHDI 181
           A  ++P GG + +   + + +  F+   N +    P  +  +   +    +  T+ S   
Sbjct: 430 ARDAMPDGGTLVVETSNQQLDTSFT---NAHENLLPGDYVVLSVSDNGCGMPETVISRAF 486

Query: 182 QFYYV 186
             ++ 
Sbjct: 487 DPFFT 491


>gi|309781200|ref|ZP_07675937.1| CHASE domain/sensory box histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308920021|gb|EFP65681.1| CHASE domain/sensory box histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 777

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----L 69
           I HD+ SP  AI   +EL       LD   +   + QL   +   A   +   R     L
Sbjct: 560 ISHDMRSPQSAILALIELQRDASRALDREVLLSRIEQLSSRTLELADAFIDLARAESQTL 619

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V  ++   D    + +   V+ RV            R   + L+NL   A   
Sbjct: 620 KLVDVDLVGLVLDAADEVWPLANRHQVEVRVVADIEAAVRGEPRLLVRALVNLLNNAIKF 679

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
              G  VT+SV+  +     ++   G      +  R  + F ++ +G   +      +  
Sbjct: 680 SAAGSMVTVSVEQDEAMFSVAVADQGAGIALADQPRLFQPFHRLHEGA-ANAPAGSGLGL 738

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+  +         +  L +
Sbjct: 739 VFVKTVVDRHGGRIAVQSTPGLGSTFTLWLPR 770


>gi|241662617|ref|YP_002980977.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
 gi|240864644|gb|ACS62305.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
          Length = 777

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----L 69
           I HD+ SP  AI   +EL       LD   +   + QL   +   A   +   R     L
Sbjct: 560 ISHDMRSPQSAILALIELQRDASRALDREVLLSRIEQLSSRTLELADAFIDLARAESQTL 619

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V  ++   D    + +   V+ RV            R   + L+NL   A   
Sbjct: 620 KLVDVDLVGLVLDAADEVWPLANRHQVEVRVVADIEAAVRGEPRLLVRALVNLLNNAIKF 679

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
              G  VT+SV+  +     ++   G      +  R  + F ++ +G   +      +  
Sbjct: 680 SAAGSMVTVSVEQDEAMFSVAVADQGAGIALADQPRLFQPFHRLHEGA-ANAPAGSGLGL 738

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+  +         +  L +
Sbjct: 739 VFVKTVVDRHGGRIAVQSTPGLGSTFTLWLPR 770


>gi|229590094|ref|YP_002872213.1| putative sensor histidine kinase/response regulator fusion protein
           [Pseudomonas fluorescens SBW25]
 gi|229361960|emb|CAY48860.1| putative sensor histidine kinase/response regulator fusion protein
           [Pseudomonas fluorescens SBW25]
          Length = 831

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 15/147 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + +  I  SL+L+           + R       S+  A      + LAF    
Sbjct: 465 IAHDFNNMLTGIIGSLDLMQRYIAAGRSDDIGRFTDAAVSSAHRAAALTHRL-LAFSRRQ 523

Query: 76  SVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKI---LLNLFMVAH 127
           S+D   +    +   +ED     K   ++   +       ++ + +++   LLNL + A 
Sbjct: 524 SLDLQPLNPNQLVASLEDLFRRTKGAHITLNVQLGHDIWPVNTDASQLENALLNLVINAR 583

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKIN 154
            ++P GG++ I   +S  +      + 
Sbjct: 584 DAMPDGGEILIETANSYLDGTDITTLE 610


>gi|172063287|ref|YP_001810938.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171995804|gb|ACB66722.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 663

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 73/218 (33%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI----IRLKFMRLA 70
           L + + H++ +P+  I+  +E+L   +  G   + +  I  S+ S        L    LA
Sbjct: 289 LLATVSHELRTPLNVIYGWVEVLRSGEGQGFAHQAIDAIDRSARSLSRMVGDLLDASSLA 348

Query: 71  FGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            G      + + L       + ++ E   A    +          ++ +  ++   L  +
Sbjct: 349 TGRVRLERTPVDLVRIVQESVREIGETAEANGLDLSTECAMPSCVIAADAERLRQLLSNL 408

Query: 126 AHASL---PRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSH 179
              ++   PRGG++ +S+  +      S+   G      R P  F           +   
Sbjct: 409 LSNAIKFTPRGGRIKVSLNPAGARVRLSVADTGQGISAERLPHLFDTFSRPEGAPALPKR 468

Query: 180 DIQFYYVIL--LAHENKIRLLPE-IIDDHNVVLSALLE 214
            +     I+  +A  +   +            ++ +L 
Sbjct: 469 GLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 506


>gi|149200017|ref|ZP_01877043.1| Signal transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
 gi|149136890|gb|EDM25317.1| Signal transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
          Length = 467

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 71/223 (31%), Gaps = 43/223 (19%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV------------------MQLIRLSSMSAIIRLK 65
           H++ SP+ AI +  EL+   G+  ++                  + L+      A     
Sbjct: 250 HELRSPLAAISSFSELM-LEGMHGDITVKQEASLQRIMANAQNLLDLVNDLVDQAKA--- 305

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL--SRERAK 117
                    GS++  +   D++   E+ +      A    ++V +   + DL       +
Sbjct: 306 -------EAGSLELKLEAKDLKAFCEEVLESVKIEAEKSGLKVIYHASEEDLVCDIHEVR 358

Query: 118 I---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
           +   ++NL   A     +GGK+ + VQ         ++ +G      +    F +   G+
Sbjct: 359 LRQVIVNLISNAIKFSKQGGKLELRVQRKGGLAFIEVEDDGIGISPADQRNIFMEFHQGD 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +  +    +A  +   +          V    L 
Sbjct: 419 TYQKEKGAGLGLHLSRQIARLHGGDITVVSEKGKGSVFRVQLP 461


>gi|186473562|ref|YP_001860904.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gi|184195894|gb|ACC73858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 781

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 23/147 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           HD  + +  +  +LELLD     D          +  +   S  A   L F R       
Sbjct: 290 HDFNNVLQILRGNLELLDSRHHRDPWSRDRIYKAIDAVDRGSKLASHLLAFGR----QQP 345

Query: 76  SVDSLIGLGDIEQVIEDFI--AVDKRVQVS-------WTGEKIDLSRERAKILLNLFMVA 126
                I L    + ++D +  A+ + V+V        W         E    +LNL + A
Sbjct: 346 LQPVAINLAAALRGMDDLLRRALGETVRVETVVGGGLWNTLVDIHQLENV--ILNLAINA 403

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKI 153
             ++P GGK+T+ + ++  ++ +   +
Sbjct: 404 RDAMPHGGKLTMELSNAMLDDEYVATV 430


>gi|78187032|ref|YP_375075.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166934|gb|ABB24032.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 817

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 22/179 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS-LELLDEVGIEDEV----MQLIRL 55
           M + +  +   ++LV  L   I HD  + + AI    +E+L +   E       ++ I  
Sbjct: 443 MQEQLNQS-QKLELVGQLAGGIAHDYNNML-AITLGHVEMLLDQVPESHPFFNGLKAILN 500

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKI 109
           S+  ++      L F R          +++ L  + +     +  A+ + +   W     
Sbjct: 501 STERSVAITSQLLAFAR----KQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPA 556

Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +  +ILL L + A  ++   G +TI+  +S       L ++       E+
Sbjct: 557 INSISIDPGQFDQILLILCLNARDAIKENGTITINAGESTTPGYAVLTVSDTGIGINER 615


>gi|238786193|ref|ZP_04630143.1| hypothetical protein yberc0001_38490 [Yersinia bercovieri ATCC
           43970]
 gi|238712910|gb|EEQ04972.1| hypothetical protein yberc0001_38490 [Yersinia bercovieri ATCC
           43970]
          Length = 475

 Score = 35.3 bits (80), Expect = 5.7,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 59/149 (39%), Gaps = 15/149 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H++ SP+ AI  + ELL E        + + L+      R++ +         ++S + L
Sbjct: 265 HELKSPLAAITGAAELLRESPPPAMAQRFL-LNIEQQSARIQLLVDKMLIQARLESRVDL 323

Query: 84  G----DIEQVIEDFI--------AVDKRVQVSWTGEKIDLSRE--RAKILLNLFMVAHAS 129
                ++  +++           +   R+++      I +      ++ L NL   A   
Sbjct: 324 QLSPLEVSHILQQTFSGKEAQAVSRGIRLRLIGADSAILMGDALLLSQALSNLIDNALDF 383

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLA 158
            P GG VT+  +    E + +++ +G+  
Sbjct: 384 TPVGGDVTLCGERQTTEYLITVEDSGSGI 412


>gi|328543926|ref|YP_004304035.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326413670|gb|ADZ70733.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 379

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 38/220 (17%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM---SAIIRLKFMR 68
           L A+L     H+I +P+  I  + +LL++   E++    +LI   +      + R++   
Sbjct: 146 LAAMLA----HEIKNPLSGIRGAAQLLEQSASEEDRALTRLIMDEADRIVKLVDRMEVF- 200

Query: 69  LAFGYTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  S +  I          L  ++++ +   A  KR+   +      +   R +++
Sbjct: 201 -------SDERPIEREPVNIHVVLDHVKRLADSGFARGKRIVEDYDPSLPPVHANRDQLI 253

Query: 120 ---LNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDGN 171
              LNL   A  ++  G    G++ I+          S+         P +F  +     
Sbjct: 254 QVFLNLVKNASEAI--GDDPDGEIRITTAFRPG-VRLSVPGTTEKVSLPLEFCVRDNGPG 310

Query: 172 VESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           V   +  H  + +           + L+ +II DH  V+ 
Sbjct: 311 VPEDLLPHLFEPFITTKPNGSGLGLALVAKIIGDHGGVIE 350


>gi|289624477|ref|ZP_06457431.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|298487714|ref|ZP_07005755.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157806|gb|EFH98885.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330870201|gb|EGH04910.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 697

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLNL + A  ++PRGG++TI   +   +                       G+    + 
Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
                  Y+ L   +    + PE+I+  
Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502


>gi|229592506|ref|YP_002874625.1| putative phytochrome/sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229364372|emb|CAY52146.1| putative phytochrome/sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
          Length = 747

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 94  IAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           +A++K + +S+  E             ++L NL   A    PR G + IS   +  E +F
Sbjct: 613 LAMEKGIDLSFNAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVF 672

Query: 150 SLKINGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           S++ +G                   E+      +  Y    +   +  +++ E       
Sbjct: 673 SVRDSGEGIAPEQLPHVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGS 732

Query: 208 VLSALLEK 215
                + +
Sbjct: 733 EFRFTVPR 740


>gi|256371019|ref|YP_003108843.1| histidine kinase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007603|gb|ACU53170.1| histidine kinase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 347

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           + H++ +P+GAI    E L +        +L++         +      L   R+  G  
Sbjct: 128 VSHELKTPVGAIVLLAEALAQEDEPTTAQRLVQRIVDEGDRLARLVSDLLDLSRIEEGSG 187

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFMVAHASL 130
             +        +E V E F    +R  ++              +R ++   L  +   ++
Sbjct: 188 VVLAEFDARSLVEAVRERFDETARRADLTLDALVPVTPTMVVGDRWQLESALSNLVDNAI 247

Query: 131 PR---GGKVTISVQDSKNENIFSLKING 155
                GG V IS+  S +  + +++  G
Sbjct: 248 KYSEPGGTVEISLDASDDTIVLAVRDEG 275


>gi|120611204|ref|YP_970882.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120589668|gb|ABM33108.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 688

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 19/162 (11%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGY-- 73
           I HD  + +  +   L+L+ +      +  + R       S+  A    + + LAF    
Sbjct: 318 IAHDFNNMLQGVVLPLQLIGQRHARGHMDDIPRYVEAGLSSARRAAALTQRL-LAFSRRQ 376

Query: 74  ---TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125
                 VD+   + ++E ++ +    + R+ +      W         E A  +LNL + 
Sbjct: 377 PLDVRPVDAAASIRNLEPMLRNTCGENTRLDIEIPEDLWPVLTDVHQLESA--VLNLAIN 434

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           A  ++P GG++ I+  +         ++   L   P    ++
Sbjct: 435 ARDAMPEGGRLRIAGDNLGGAQALPPQVREALGLPPGDLVRL 476


>gi|71735973|ref|YP_275436.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556526|gb|AAZ35737.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 697

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLNL + A  ++PRGG++TI   +   +                       G+    + 
Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
                  Y+ L   +    + PE+I+  
Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502


>gi|218887238|ref|YP_002436559.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758192|gb|ACL09091.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 729

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 35/98 (35%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           + LLN+F+ A  ++P GG++++ +  +    I     +      PE    I D    +  
Sbjct: 571 QALLNVFLNALEAMPSGGELSVRLAAAPGNRIAVAVRDTGTGIAPEHLATIFDPYFTTKS 630

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +           ++ LL 
Sbjct: 631 QGTGLGLAIVHKIVEAHGGEVSLRSALGQGTEITFLLP 668


>gi|83649282|ref|YP_437717.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83637325|gb|ABC33292.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 479

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 28/219 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA----IIRLKFMRLA 70
            + H++ +P+ +I   + LL E         + EV+ L+  +  +        L F RL 
Sbjct: 259 HVSHELKTPLASIREGVALLQEEVVGQISHGQREVLYLVNENGRALQQLIENLLSFNRLN 318

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           F    S  +     D+  ++E+ +         KR  +   G ++ L+ ER ++   L  
Sbjct: 319 F----SGQAQKMTFDVSALVEELLHLHWLSLTHKRQIICVGGPQLTLTAERPRLHSALDN 374

Query: 125 VAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNV--ESTI 176
           +   ++  G  +  I ++ +  ++ F L++    A  PE      F     G+V     +
Sbjct: 375 LISNAIAYGASEGRIWLEWNIEDDHFILRVTNTGAPIPEAERSRIFEPFYQGSVKRSGAV 434

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I               L         V  +  L +
Sbjct: 435 KGSGIGLSVARECVQTQGGELKLLTTTGQLVSFAIYLPR 473


>gi|148255093|ref|YP_001239678.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407266|gb|ABQ35772.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 951

 Score = 35.3 bits (80), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 13/132 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQ-LIR---LSSMSAIIRLKFMRLAFGY-TGSVD 78
           HD  + +  I  +L++L   G+  E  Q LI     S+  A   ++ + LAF        
Sbjct: 602 HDFNNLLTPIVGALDMLQRRGVGGEREQRLIAGAVQSADRAKTLVQRL-LAFARRQPLQP 660

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAK------ILLNLFMVAHASLP 131
             + LG +   + + +A     Q+    +   DL   +A        +LNL + A  ++P
Sbjct: 661 VAVDLGLLVAGMGELVASTTGPQIKVVVDAARDLPPAKADPNQLEMAVLNLAVNARDAMP 720

Query: 132 RGGKVTISVQDS 143
            GG + ISV+ +
Sbjct: 721 DGGTLRISVRAA 732


>gi|295838625|ref|ZP_06825558.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces
           sp. SPB74]
 gi|295827101|gb|EFG65239.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces
           sp. SPB74]
          Length = 573

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 17/207 (8%)

Query: 24  HDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           H++ +P+ AI    E+L+E       + +  ++L+   +      +    +  R   G  
Sbjct: 317 HELRTPLTAITAVTEVLEEEIDTLDPMIEPAVRLVVSETRRLNTLVENLMEVTRFDAGTA 376

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133
             V   + + D      D  A    V++    E+   +R +  ++ + L  +   +L  G
Sbjct: 377 RLVCDDVDIADQITACVDARAWLDAVELD--AERGITARVDPRRLDVILANLIGNALKHG 434

Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188
           G  V +SV+      +  ++ +G        P  F +    +      +   +       
Sbjct: 435 GSPVRVSVRVEGPSLVIRVRDHGPGIPEDVLPHVFDRFYKASASRPRSEGSGLGLSIAQA 494

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLEK 215
            AH +   +      D   V +  L +
Sbjct: 495 NAHIHGGDITAANSPDGGAVFTLRLPR 521


>gi|149176869|ref|ZP_01855479.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797]
 gi|148844306|gb|EDL58659.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797]
          Length = 491

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 44/232 (18%)

Query: 18  LCSRICHDIISPI-------GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----F 66
           L + + H++ +P+       G I +    L E  +     Q I+  +      ++    F
Sbjct: 261 LAAGVAHELGTPLNVVSGRAGLISSGQ--LSEADVRSSA-QTIQKETERMTAIIRQLLDF 317

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDL------SRERAK 117
            R     TG+  + I L  + Q   + +   A+   V++  +  +           +  +
Sbjct: 318 AR----RTGTEQASIDLIRLAQQTCELMQPLAMKAHVELIVSANENLPVNTVGDPGQLQQ 373

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++ NL   A  ++P GGK+ I+V     +    ++    L RF           + +   
Sbjct: 374 VITNLISNAIQAIPDGGKIRITVHSEDIQPPAMIESE--LNRFACLEVIDTGTGMTNIET 431

Query: 178 SHDIQFYYVIL---------------LAHENKIRLLPEIIDDHNVVLSALLE 214
            H  + +Y                  +  E+   +      D        L 
Sbjct: 432 EHVFEPFYTTKDVGEGTGLGLSIAYGIVREHGGWIDVASEKDQGTTFRVWLP 483


>gi|77456489|ref|YP_345994.1| osmolarity sensor protein envZ [Pseudomonas fluorescens Pf0-1]
 gi|77380492|gb|ABA72005.1| osmolarity-sensing histidine-kinase [Pseudomonas fluorescens Pf0-1]
          Length = 437

 Score = 35.3 bits (80), Expect = 5.9,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 18/211 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGYT 74
            L+ + + HD+ +P+  +  SLEL+ +     + M  +R         L +F  LAF   
Sbjct: 223 ELMLAGVSHDLRTPLTRLRLSLELMGDRTDLTDDM--VRD-IEDMDAILDQF--LAFIRD 277

Query: 75  GSVD--SLIGLGD-IEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAKILLNLFMVAHASL 130
           G  +    + L D + +V   +   +++V++     +   L R   K LLN  ++ +A  
Sbjct: 278 GRDESVEEVDLSDLVREVAAPYNQTEEKVRLRLEPIQPFPLRRVSMKRLLN-NLIGNALN 336

Query: 131 PRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQF 183
             GG V ++       +     L +    A       + +      G+         +  
Sbjct: 337 HAGGSVDVAAYVSGDTSAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRARGGKGTGLGL 396

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V  +A  +   +         +     L 
Sbjct: 397 AIVKRIASMHGGNVELRNRSGGGLEARVRLP 427


>gi|330807932|ref|YP_004352394.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376040|gb|AEA67390.1| Putative Histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 489

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 33/217 (15%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL 69
           + L S I HD+ +PI  +   +ELL++  ++       + ++L+      A+  +K    
Sbjct: 286 SQLFSAISHDLRTPITRLRLRVELLEDENLQAKFGRDLDELELL---VKGALQCVK---- 338

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERA--KILLN 121
                  +   I   D+  V++  +        + RV            +  A  + + N
Sbjct: 339 ----DTDIHENIEPVDLNHVLDCLVEPYLAPNGNGRVTQDGRALAPYPGKPLALKRCIGN 394

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDS 178
           L      +L  G    + + D +   I  +   G      R  + F       +      
Sbjct: 395 LI---DNALKYGQNAHLHIDDDETAFILHVDDEGPGVPEQRLEQVFEPHF--RLAGQQQG 449

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +       +AH +   +  + + +  + ++  L +
Sbjct: 450 YGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPR 486


>gi|319792685|ref|YP_004154325.1| pas/pac sensor signal transduction histidine kinase [Variovorax
           paradoxus EPS]
 gi|315595148|gb|ADU36214.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus EPS]
          Length = 375

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 63/177 (35%), Gaps = 14/177 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLK----F- 66
               +   + HD+ +P+ AI   ++LL   E      V+  +R S+  A   ++    F 
Sbjct: 154 FAEQMVGIVSHDLRNPLSAILMGVQLLARVEKERRTRVLGHVRDSAERAQRLIEELLDFT 213

Query: 67  -MRLAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
             R+  G +  +   I L ++     D   +A   R  +     +     +  ++   + 
Sbjct: 214 QARIGKGLSVKLGE-IDLHEVAAHAVDELGLAFPNRKIMHVVRGEGHCIADADRLAQLIG 272

Query: 124 MVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            +A  +   G  G   I V+   +    +L I    A  P +    +   +   + +
Sbjct: 273 NLASNAATYGLPGT-PIIVRTETDGASATLSIENQGAPIPAEMVATLFEPMVRGVGA 328


>gi|310821064|ref|YP_003953422.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394136|gb|ADO71595.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 748

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 27/162 (16%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK-F 66
            L AL  + + + H+I +P+GAI  + + LD     G + E + +I          +  F
Sbjct: 469 RLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVVTAF 528

Query: 67  MRLA------FGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLSRE 114
           +  A      FG T        L ++       I       ++  V++  T  K+D   E
Sbjct: 529 LDYARPLKQNFGPT-------DLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAE 581

Query: 115 RAK-ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKIN 154
           + K +L+NL   A  ++ P  G++T+          F   + 
Sbjct: 582 QLKQVLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVA 623


>gi|322436097|ref|YP_004218309.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321163824|gb|ADW69529.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 257

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 20/153 (13%)

Query: 24  HDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMS----AIIRLKFMRLAFGYTG 75
           H+I +P+ AI N    + E  D+     E + L++    S    A   L F R   G   
Sbjct: 37  HEINNPLEAITNLAYLAREEADDPEKVREYVSLLQEQLASVVQIAHQTLSFHR---GAAA 93

Query: 76  SVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128
              + + +G+I              K++++          R  A    +++ NL + A  
Sbjct: 94  L--AAVDMGEITDAAVRVYQWKLAAKQIRLLKEIVPDAKVRAHAGELLQVMSNLVVNAID 151

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +LP  G + + V+  + +   ++  +G+    P
Sbjct: 152 ALPEKGTLRLRVRRCEAQVHLTIADDGHGIPEP 184


>gi|182412287|ref|YP_001817353.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839501|gb|ACB73753.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 642

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLK----FMRLAFG 72
           I HD  + + AI +        G  +       +Q I  ++  A   +K    F R A  
Sbjct: 276 IAHDF-NNLLAIIHGYSEFCLQGAAEPAVMQKSLQEIHRAAQRASGLVKQILTFSRKA-- 332

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLSRERAK-ILLNL 122
                +      D+ Q+  D +A         +   + ++     +   + + + I+LNL
Sbjct: 333 -----EIRYAPVDLNQLARDLVALMSETFPRTITFTLDLAEKLPPLLADQTQVQQIVLNL 387

Query: 123 FMVAHASLPRGGKVTIS 139
            + A  ++P GG + +S
Sbjct: 388 CVNARDAMPDGGSIVVS 404


>gi|330986412|gb|EGH84515.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 697

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLNL + A  ++PRGG++TI   +   +                       G+    + 
Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
                  Y+ L   +    + PE+I+  
Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502


>gi|330888950|gb|EGH21611.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 697

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLNL + A  ++PRGG++TI   +   +                       G+    + 
Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
                  Y+ L   +    + PE+I+  
Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502


>gi|311106449|ref|YP_003979302.1| sensory box protein 6 [Achromobacter xylosoxidans A8]
 gi|310761138|gb|ADP16587.1| sensory box protein 6 [Achromobacter xylosoxidans A8]
          Length = 1000

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 20/182 (10%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR---LSSMSAI----IRLKFMRLA- 70
           I HD  + +  I  +L L+      G  ++ ++ +     S+  A       L F R   
Sbjct: 626 IAHDFNNMLQGISGALYLVQRKITAGAPEQALRFVDVAMDSANRAAHLTQRLLTFSRRQP 685

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                F    ++ S++ L          + +D R ++ WT        E A  +LNL + 
Sbjct: 686 IDPKPFCAASALQSMVALFHRYTGERVALRLDLRQEL-WTVCCDKNQFENA--MLNLVIN 742

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++P GG +T++ ++ + ++   L+  G  + RF E         +   + +H    +
Sbjct: 743 ACDAMPNGGTLTVAARNVEPDDPLLLQSVGAHSGRFVEVSVTDEGCGMAPDVLAHAFDPF 802

Query: 185 YV 186
           + 
Sbjct: 803 FT 804


>gi|325109780|ref|YP_004270848.1| multi-sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970048|gb|ADY60826.1| multi-sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 461

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 66/166 (39%), Gaps = 18/166 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L + + H+I +P+ A+   L+LLDE            E++ +I          L+  R  
Sbjct: 236 LAAGLHHEIKNPLAAVTLHLQLLDEELDGCPVSDEAREMLDVINTELARIGGVLESFR-D 294

Query: 71  FGYTGSVD-SLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLS---RERAKI---LL 120
           F     +  + + + ++ +     IA      RVQ+S       L     +R ++   L 
Sbjct: 295 FAAVDRLWLADVNMRELIEQQTRLIAPQAAASRVQISVDSSVRTLPTISGDRTRLEQVLH 354

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           NLF+ A  ++  GG++ +S   +   N   + +       P+   +
Sbjct: 355 NLFVNAIEAMKTGGQLRVSAVVAPASNRLVVTVADTGGGIPDDLKE 400


>gi|257484781|ref|ZP_05638822.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011167|gb|EGH91223.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 697

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 25/88 (28%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLNL + A  ++PRGG++TI   +   +                       G+    + 
Sbjct: 440 ALLNLCINARDAMPRGGRITIETANRWIDER---------------------GSQSRDLT 478

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDH 205
                  Y+ L   +    + PE+I+  
Sbjct: 479 PGQ----YLSLCVSDTGTGMSPEVINRA 502


>gi|254719182|ref|ZP_05180993.1| Nitrogen regulation protein ntrB [Brucella sp. 83/13]
 gi|265984179|ref|ZP_06096914.1| signal transduction histidine kinase [Brucella sp. 83/13]
 gi|306838175|ref|ZP_07471031.1| Nitrogen regulation protein ntrB [Brucella sp. NF 2653]
 gi|264662771|gb|EEZ33032.1| signal transduction histidine kinase [Brucella sp. 83/13]
 gi|306406765|gb|EFM62988.1| Nitrogen regulation protein ntrB [Brucella sp. NF 2653]
          Length = 380

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ +  +  A   R    +      +   R    ++ L
Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|298527855|ref|ZP_07015259.1| integral membrane sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511507|gb|EFI35409.1| integral membrane sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 574

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/68 (16%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 105 TGEKIDLSRERAKILL-NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARF 160
              +I + R++  ++L NL   +  ++P+GG++ I+    +    +++  + +       
Sbjct: 451 DLPRILMDRKKIHLILDNLISNSMHAMPQGGQIHITAGSSRAQNGQDLVKISLTDTGPGL 510

Query: 161 PEKFTQIV 168
           PE+   ++
Sbjct: 511 PEQVLAVL 518


>gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. ORS278]
          Length = 774

 Score = 35.3 bits (80), Expect = 6.0,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 71/203 (34%), Gaps = 31/203 (15%)

Query: 23  CHDIISP----IGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           CHDI++     +  I+   ++LD   IE   M+L       A    + +R+  G      
Sbjct: 580 CHDILTSGQYLLEVIN---DILDMSKIEAGRMKLDMEPLDLAKTLAESLRVVSGRAQDKS 636

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI 138
            ++                    +      I   R   +I++NL   A    P GG+VT+
Sbjct: 637 LVLD-----------------ADIEGNIPVIADRRATKQIMVNLLSNAVKFTPEGGRVTM 679

Query: 139 SVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
             +  +++ +  +   G      +LAR    F Q+ +  +  T     +       LA  
Sbjct: 680 RSRVFEDKVVLIIADTGIGIPAQSLARLGRPFEQV-ESQMTKTYHGSGLGLAIARSLAQL 738

Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215
           +   +      +H  V+   L +
Sbjct: 739 HGGSMRLRSRLEHGTVVRVTLPR 761


>gi|330942476|gb|EGH45070.1| GAF:ATP-binding region, ATPase-like:histidine kinase A [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 386

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 31/215 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMSAIIR----LKFMRLAFGYTGS 76
           HD+ +P+ AI+ S ELL    ++++  Q+++    S   A       L F R   G+   
Sbjct: 175 HDLRNPLFAINASAELLLRRPLDEKAQQVVQHILTSGQRASQLVDDVLDFARGRMGH--- 231

Query: 77  VDSLIGLGDI---EQVIEDFIAVDKRV-------QVSWTGEKIDLSRER-AKILLNLFMV 125
               + + +    ++ +E  I+  +RV             E+I    ER A++L NL   
Sbjct: 232 -GIPLSIHEAPGLDKTLEHVISEVQRVHPSRPIHSNIGALERIRCDHERIAQLLSNLV-- 288

Query: 126 AHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SH 179
              ++  G  +  + V    +  +F L +       PE     +       I        
Sbjct: 289 -SNAISHGDAESPVEVTADVHGEVFVLSVTNQGEPIPESVRAQLFLPYSRPITDEPQAGL 347

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  Y    +A  +   L      +   V +  + 
Sbjct: 348 GLGLYIASEIAIAHGGTLEVCSTREQGTVFTFSMP 382


>gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 996

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 25/224 (11%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-------FM 67
            A L S + H+I +P+ AI   LELL+ +     V+  +R  + S+   L+       F 
Sbjct: 506 SAFLAS-MSHEIRTPLNAILGHLELLERLPQAAPVVARVRTVASSSRALLQILNDILDFS 564

Query: 68  RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKR------VQVSWTGEKIDL--SRERAKI 118
           ++  G            D + Q    F+ + +R        +     +  L       ++
Sbjct: 565 KVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHTIDAALPRYYLGDPGRIRQM 624

Query: 119 LLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFT-------QIVDG 170
           ++NL   A     RG   + +S           +++       P K           +D 
Sbjct: 625 VVNLLSNAIKFTDRGSVSIEVSAGKGNPAIPLVIRVTDTGIGIPAKRQARVFDAFDQIDA 684

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++        +       +A      +     +    + +  L 
Sbjct: 685 SITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTVTLP 728


>gi|295690484|ref|YP_003594177.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432387|gb|ADG11559.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 575

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 27/154 (17%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGYTG 75
           HD  + +    + L+LL+         +L R     AI R        L F R     + 
Sbjct: 221 HDFNNLLMVASSGLDLLERTSDPARRERL-RDGIRQAIDRGASLTQQLLAFSR----RSP 275

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMVA 126
               ++ +G     +   +    R  V+         W  E +D S+     +LN+ + A
Sbjct: 276 LKPEVVDIGQRLSGMLAILDRSLREDVTVRMQLPPDLWRVE-VDASQMEV-AVLNIAINA 333

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             ++P GG +TI  ++  +     +   G++ R 
Sbjct: 334 RDAMPDGGTITIEARNEPSGRPDGV---GDMVRL 364


>gi|188583305|ref|YP_001926750.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179346803|gb|ACB82215.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 431

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 18/205 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGI---EDEVMQL---IRLSSMSAIIRLKFMRLAFGYTGSV 77
           H++ +P+ A+   L+ L        +   M L   +R ++      L+  RL  G     
Sbjct: 225 HELRTPLAAMQIQLDSLGGPAGGGGDARRMALADGLRRANRLVDQLLRLARLDDGAEA-R 283

Query: 78  DSLIGLGDIE-QVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILL-NLFMVAHASL 130
            + + LG +    + D + + +R  ++      T   +  S +  ++L  NL   A    
Sbjct: 284 PASVDLGQLLLDCVADHVVLAERKDINLGVHIETPATLHASEDEVRVLFANLVDNALRYT 343

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVI 187
           P GG+V + + +     + +++  G           F +         ++   +      
Sbjct: 344 PSGGQVDVRLLNRNGACVVTVRDTGCGLPPGSEGRLFDRFFRAAPPE-VEGTGLGLAIAR 402

Query: 188 LLAHENKIRLLPEIIDDHNVVLSAL 212
            +A  N + L  E   D    L+ +
Sbjct: 403 RIAERNDLGLTVENRRDGQGTLATV 427


>gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 664

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 30/226 (13%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA----IIR 63
           L A+      H++ +P+ AI    E+L +         +   +  I  S+          
Sbjct: 429 LAAM-----SHELRTPLNAIMGFSEVLLDQHFGPLNDKQQVYVNDILDSARHLLEIINDV 483

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRERA---- 116
           L   +L  G T      + +  + +     I   A  K + V    +     + +     
Sbjct: 484 LDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDVRR 543

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQ---IVD 169
             +I+ NL   A    P GG + +  +D+      S++  G        E   +    V 
Sbjct: 544 FKQIMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVEDTGIGIAATHAEHIFEPFYQVS 603

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
           GN+ +      +       L   +  R+  E  +       + +L 
Sbjct: 604 GNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLP 649


>gi|116624045|ref|YP_826201.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116227207|gb|ABJ85916.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1210

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 15/162 (9%)

Query: 35   NSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDI----EQV 89
               E      +  + + L    + +   +L    LAFG         + L ++      +
Sbjct: 868  AGKESTSGTSLAAQEIVLAAERAANLTRQL----LAFGRRQVMQPRSLDLTEVVSSLTSM 923

Query: 90   IEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNE 146
            ++  +  + R+Q+   G  +    +     ++L+NL + A  ++P GG++TI   +    
Sbjct: 924  LQRVLGANIRLQLIPHGSPLITRADSGMLDQVLMNLVVNACDAMPDGGQLTIETTERTFT 983

Query: 147  NIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSHDIQFYYV 186
               + +I    A      + T    G    ++  H  + ++ 
Sbjct: 984  QREARRIPDARAGRYVSLRVTDTGSGISPESL-PHIFEPFFT 1024


>gi|291300709|ref|YP_003511987.1| aminoglycoside phosphotransferase [Stackebrandtia nassauensis DSM
           44728]
 gi|290569929|gb|ADD42894.1| aminoglycoside phosphotransferase [Stackebrandtia nassauensis DSM
           44728]
          Length = 443

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 11/97 (11%)

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           LI   +      L   RL     G  D    L         + A     +V W   +I  
Sbjct: 193 LIDARTRRVAAVLDVARL-----GVADRYTDLAAA---TRGWRAGGLDKRVWWRYGEIPA 244

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             +R ++   L   A   LPR G   +  +    +  
Sbjct: 245 DADRVRLYRLL---AEFCLPRPGTGRVEPRQDGGDVR 278


>gi|254710195|ref|ZP_05172006.1| Nitrogen regulation protein ntrB [Brucella pinnipedialis B2/94]
 gi|256031689|ref|ZP_05445303.1| Nitrogen regulation protein ntrB [Brucella pinnipedialis M292/94/1]
 gi|261317753|ref|ZP_05956950.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94]
 gi|265988784|ref|ZP_06101341.1| signal transduction histidine kinase [Brucella pinnipedialis
           M292/94/1]
 gi|261296976|gb|EEY00473.1| signal transduction histidine kinase [Brucella pinnipedialis B2/94]
 gi|264660981|gb|EEZ31242.1| signal transduction histidine kinase [Brucella pinnipedialis
           M292/94/1]
          Length = 380

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 139 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 193

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ +  +  A   R    +      +   R    ++ L
Sbjct: 194 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 250

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 251 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 307

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 308 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 343


>gi|108762754|ref|YP_631541.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466634|gb|ABF91819.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 747

 Score = 35.3 bits (80), Expect = 6.1,   Method: Composition-based stats.
 Identities = 42/188 (22%), Positives = 77/188 (40%), Gaps = 19/188 (10%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            L AL  + + + H+I +P+GAI  + + LD V  + E  + + +       RL  +  A
Sbjct: 468 RLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPVHYQGEDAEFLEVIVEEVN-RLNGVVTA 526

Query: 71  F-GYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLSRERAK-IL 119
           F  Y   +    G  D+ +V+   +          +   V++     ++D   E+ K +L
Sbjct: 527 FLDYARPLKQSFGTTDLNEVVTRTMRLIQNDVPSNLHLAVELDLMLPRVDGDAEQLKQVL 586

Query: 120 LNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +NL   A  +L  R G++++  +  K E    L+  G  A F E         + S    
Sbjct: 587 INLVQNAVQALETREGRISVRTE--KPERFGELRSAG--AEFVEVRVSDNGPGIPSDQHP 642

Query: 179 HDIQFYYV 186
           H    +Y 
Sbjct: 643 HIFVPFYT 650


>gi|323136256|ref|ZP_08071338.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322398330|gb|EFY00850.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 628

 Score = 35.3 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 14/144 (9%)

Query: 22  ICHDIISPIGAIHNSLELL-------DEVGIE--DEVMQLIRLSSMSAIIRL-KFMRLAF 71
           I HD  + +  I  SL +L       ++ G +  D  +Q    S+   + RL  F R+  
Sbjct: 257 IAHDFNNMLAVIVASLNILRRKLDRKEDGGEQMIDSALQS-ADSAAGLVRRLLAFSRIQP 315

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSRERAK-ILLNLFMVAHA 128
                +D+   + DI ++++  +  + R++  ++       +     +  LLNL + A  
Sbjct: 316 LAPTPLDANKFVSDISKMLKRALGENIRLETVLADGLWSTRIDANELESALLNLAVNARD 375

Query: 129 SLPRGGKVTISVQDSKNENIFSLK 152
           ++P GG +TI   +   ++ ++ +
Sbjct: 376 AMPNGGTLTIETANRALDDAYAAE 399


>gi|226225802|ref|YP_002759908.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226088993|dbj|BAH37438.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 672

 Score = 35.3 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 81  IGLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI 138
           + L +  ++     +   RV  ++    +   L  E  + +LNL   A  ++P GG +T+
Sbjct: 395 LDLTEPMRLRRSVGSHAVRVATELEPGVQGRGLPGEIREAMLNLVQNAIDAMPEGGTLTV 454

Query: 139 SVQDSKNENIFSLKING 155
                  +   S++  G
Sbjct: 455 RCWGEGTDACLSVQDTG 471


>gi|114707286|ref|ZP_01440183.1| sensor kinase [Fulvimarina pelagi HTCC2506]
 gi|114537167|gb|EAU40294.1| sensor kinase [Fulvimarina pelagi HTCC2506]
          Length = 841

 Score = 35.3 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGY-TGS 76
           I HD  + +  I  S++ L       +     + LI+ S+  A   ++ + LA+      
Sbjct: 472 IAHDFNNVLTVITASVDFLLMNQKPGDPSFQDLLLIKQSANRAASLVRQL-LAYSRRQTM 530

Query: 77  VDSLIGLGDI--------EQVIEDFIAVDKR-VQVSWTGEKIDLSRERAKILLNLFMVAH 127
              ++ L D+        +++  D   +++R  +  W         E+   + NL   A 
Sbjct: 531 RPKMLNLTDVVADLDLLLKRIAGDKTKLERRHARNLWPVMADIGQFEQV--ITNLVGNAR 588

Query: 128 ASLPRGGKVTISVQDSKNE 146
            ++P GG + I  ++ +  
Sbjct: 589 DAMPNGGTIKIETRNVEEG 607


>gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 478

 Score = 35.3 bits (80), Expect = 6.2,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 19/178 (10%)

Query: 22  ICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFG 72
           + HD+ +P+ AI   +  +LD      E ++       +   R        L   R   G
Sbjct: 248 VSHDLKTPLTAIQGFAQAILDGTAQSPETLRNAATVIYNEASRMYRLVLDLLTLARFDAG 307

Query: 73  YTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128
               V   +   D+  + +  F  + ++  V    E   L    A   +++  L  +   
Sbjct: 308 TADLVFEKVDPQDLLRETVRRFSPLAQKAGVILRLEDASLPVLFADGERLMQALANLMDN 367

Query: 129 SL---PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180
           +L   P GG + +  +  +   +  ++  G      E    F +   GN   + D   
Sbjct: 368 ALKYTPAGGTIVLRGKVEEGHLLLEVQDTGKGISPEEQTRIFERFYRGNPSRSQDGEQ 425


>gi|226226746|ref|YP_002760852.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226089937|dbj|BAH38382.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 862

 Score = 35.3 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 85  DIEQVIEDFIAVDKRVQVSWTG---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141
           DIE+++   +  D  +QV+        +    +  ++++NL + A  ++P GG +TI   
Sbjct: 569 DIERMLRRVLGDDVTLQVALDDHLHPVLADPGQIEQVVMNLAVNARDAMPSGGTLTIRTG 628

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQFYYV 186
           + + +  F+   +G         +    G+ +     +   + ++ 
Sbjct: 629 NEEVDATFAALHDGASLGPHAVISVSDTGSGMSRETQARIFEPFFT 674


>gi|84625437|ref|YP_452809.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84369377|dbj|BAE70535.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 350

 Score = 35.3 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILL-- 120
             R A G    V +L    ++ +  +  + + + +R+QV W  ++    +    +++L  
Sbjct: 201 LFRAALGAGEGVSTLRAECELAERYLAIESLRLGERLQVRWHRQEPLPWKLPMPRLVLQP 260

Query: 121 ---NLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
              N  +   + +P GG + +S++   ++    +
Sbjct: 261 LVENAVLHGVSRMPEGGTLYLSLRQRGSQLQIRI 294


>gi|327479681|gb|AEA82991.1| sensory box histidine kinase/response regulator [Pseudomonas
           stutzeri DSM 4166]
          Length = 678

 Score = 35.3 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIR----LKFM 67
           L S + HD  + +G I  SL LL+    +     L R       S+  A       L F 
Sbjct: 307 LTSGLAHDFNNLLGGIVGSLGLLERRLDQGRHDDLRRHLANAQSSADRAAALTHRLLAFS 366

Query: 68  R---LAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           R   L    T     +  + D+ ++ I   +A +  +       + D ++    +LLNL 
Sbjct: 367 RRQPLQMRPTDGNALVRSMRDLLQRTIGPLVAFELMLADDLWLTRCDANQLE-NVLLNLA 425

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKI 153
           + A  ++P GG++ IS  + + ++  + ++
Sbjct: 426 LNARDAMPNGGRLRISTANRELDDAAAARL 455


>gi|94970627|ref|YP_592675.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552677|gb|ABF42601.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 766

 Score = 35.3 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VDSLIGL----GDIEQVIEDFIA 95
           ++  +  +V Q+    + +A +  +   LAF          I L     D++++++  I 
Sbjct: 425 NDPELRTDVEQIDEAGARAAALTSQL--LAFSRRQMLQPRTINLNGLVRDLQKMLQRLIG 482

Query: 96  VDKRVQV---SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
               +        G       +  +++LNL + A  ++PRGG + +  ++ + +  F+
Sbjct: 483 EHIELTTRAGEGLGAVKADPGQIEQVILNLVVNARDAMPRGGSLVLETRNVQVDEAFA 540


>gi|78221916|ref|YP_383663.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193171|gb|ABB30938.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 248

 Score = 35.3 bits (80), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 69/213 (32%), Gaps = 18/213 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR-------LKFMRL 69
           + + + H++ +P+  I ++ ++ L E  + + V +++   +  A          L F R 
Sbjct: 35  MAAGVVHELNTPLSVIVSATQMILREEELPEFVREMVERVNEEAHRLAELTKGVLSFARR 94

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSRERAK-ILLNLF 123
             G     D+   +G++   +       KR       +      I     R K +++NL 
Sbjct: 95  DSGGRAEADANQVIGEVMTFLR--FEAGKRSIGVIEDLDHRLPFIAADANRVKQVIINLV 152

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDI 181
           M A  ++  GG + +         +     +      P+   +I       +   +   +
Sbjct: 153 MNAFQAMGEGGTLFLRTVQESETAVTVQVADTGPGIPPDAQERIFTPFFTTKEPGEGTGL 212

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    L       +  + +       +    
Sbjct: 213 GLFITRKLMEGIGGAIAVKSVVGEGTTFTLTFP 245


>gi|265754966|ref|ZP_06089880.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
 gi|263234577|gb|EEZ20156.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 3_1_33FAA]
          Length = 1417

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGN 171
            KI+ NL   A    P GGK+  SV   +      + ++      P     + F++ +  +
Sbjct: 1020 KIVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSS 1079

Query: 172  VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 DS  I  +    L + +K  +     +    V +  L 
Sbjct: 1080 FSG--DSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLP 1120


>gi|258512962|ref|YP_003189219.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-01]
 gi|258513223|ref|YP_003189479.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634865|dbj|BAI00840.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635126|dbj|BAI01100.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637920|dbj|BAI03888.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256638181|dbj|BAI04148.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640974|dbj|BAI06935.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256641235|dbj|BAI07195.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644029|dbj|BAI09983.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256644290|dbj|BAI10243.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647084|dbj|BAI13031.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256647345|dbj|BAI13291.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650137|dbj|BAI16077.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256650398|dbj|BAI16337.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653128|dbj|BAI19061.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256653389|dbj|BAI19321.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656181|dbj|BAI22107.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-12]
 gi|256656442|dbj|BAI22367.1| two component sensor histidine kinase KdpD [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 895

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 61/172 (35%), Gaps = 18/172 (10%)

Query: 3   KNICFNLSSMDL-VALLCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIRLSSM 58
                ++ +  L  ALL S I HD+ +P+ +I    +SLE   E   E+   +L+     
Sbjct: 656 DQARLDVETDKLRGALLTS-ISHDLRTPLASILGATSSLESYGEELDENARKELLSTIHD 714

Query: 59  SAIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEK 108
            A    +F        RL  G        + +G++          +  D   ++    + 
Sbjct: 715 EADRLNRFVANLLDMTRLEAGALQPRKERVDIGEVIASALCRAARLLSDHETEMVIEPDL 774

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             L  +     + L N+   A    P G K+ ++   + +  +  +   G  
Sbjct: 775 PMLLLDDVLLEQALFNILDNAGKYTPVGTKIVVTASVAADTLLIRVTDEGEG 826


>gi|237724524|ref|ZP_04555005.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D4]
 gi|229437083|gb|EEO47160.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides dorei 5_1_36/D4]
          Length = 1417

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGN 171
            KI+ NL   A    P GGK+  SV   +      + ++      P     + F++ +  +
Sbjct: 1020 KIVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSS 1079

Query: 172  VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 DS  I  +    L + +K  +     +    V +  L 
Sbjct: 1080 FSG--DSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLP 1120


>gi|212693766|ref|ZP_03301894.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855]
 gi|237709290|ref|ZP_04539771.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
 gi|212663655|gb|EEB24229.1| hypothetical protein BACDOR_03287 [Bacteroides dorei DSM 17855]
 gi|229456675|gb|EEO62396.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 9_1_42FAA]
          Length = 1417

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 117  KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGN 171
            KI+ NL   A    P GGK+  SV   +      + ++      P     + F++ +  +
Sbjct: 1020 KIVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSS 1079

Query: 172  VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 DS  I  +    L + +K  +     +    V +  L 
Sbjct: 1080 FSG--DSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLP 1120


>gi|58583632|ref|YP_202648.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188575116|ref|YP_001912045.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58428226|gb|AAW77263.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188519568|gb|ACD57513.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 350

 Score = 35.3 bits (80), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILL-- 120
             R A G    V +L    ++ +  +  + + + +R+QV W  ++    +    +++L  
Sbjct: 201 LFRAALGAGEGVSTLRAECELAERYLAIESLRLGERLQVRWHRQEPLPWKLPMPRLVLQP 260

Query: 121 ---NLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
              N  +   + +P GG + +S++   ++    +
Sbjct: 261 LVENAVLHGVSRMPEGGTLYLSLRQRGSQLQIRI 294


>gi|268609372|ref|ZP_06143099.1| two-component sensor histidine kinase [Ruminococcus flavefaciens
           FD-1]
          Length = 353

 Score = 35.3 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           S + H+I +PI  I NS E+L +  + ++  Q    S  +A  RL
Sbjct: 139 SNVSHEIKTPIAVIQNSAEMLKKPDLSEDKRQEYVDSITNAAKRL 183


>gi|146339133|ref|YP_001204181.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146191939|emb|CAL75944.1| putative sensor histidine kinase with a Response regulator receiver
           domain [Bradyrhizobium sp. ORS278]
          Length = 565

 Score = 35.3 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 23/177 (12%)

Query: 24  HDIISPIGAIHNSLELLD---EVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFG------- 72
           HD  + +  I   L++LD   +      +M  +I+ +   A +  +   LAF        
Sbjct: 202 HDFNNLLMVISGGLDMLDRQADPARRRRLMDGMIQAAQRGASLTRQL--LAFSRRQELKP 259

Query: 73  -YTGSVDSLIGLGDI--EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                   + G+ ++    +  D     +  +  W  E      E   ++LNL + A  +
Sbjct: 260 EPVDIARQIGGMRELLDRSLRGDVHVQFEFPEDLWPVEVD--PGELELVVLNLAVNARDA 317

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           +P GG + +        N    ++ G+  R            +   + +   + ++ 
Sbjct: 318 MPTGGTIVV--HGENLPNWRDDEVAGDYVRLS---VIDSGTGMTEEVRARVFEPFFT 369


>gi|120611842|ref|YP_971520.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
 gi|120590306|gb|ABM33746.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
          Length = 442

 Score = 35.3 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 24/217 (11%)

Query: 22  ICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMS-------AIIRLKFMR 68
           + HD+ +P+  I  + +LL            D   +++   + +           L F  
Sbjct: 215 VSHDLRNPLTTILLATDLLTRQAASPTPTPPDTAARMLGNITRAGQRARRLIADLLDFTV 274

Query: 69  LAFGYTGSVDSL-IGLGD-IEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
           +  G   SV    + L     ++IE+  +A   R          ++S +  +I   L  +
Sbjct: 275 VRLGAGLSVSRRPVDLHQLAARIIEELSVAFPGRTIEHTIVGGGEISADPDRIAQLLGNL 334

Query: 126 AHASLPRG---GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSH 179
              ++  G     VT+S          ++  +G+          F  +V G       + 
Sbjct: 335 VGNAMAYGTPGSTVTVSTAVESGTARLAVHNHGDPIPRHTLGRLFQPMVRGVAADDTSAR 394

Query: 180 DIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      V  +A  +  +++ +   DH    +    
Sbjct: 395 SVGLGLFIVRAIAQAHGGQVVVQSSHDHGTEFAFSFP 431


>gi|21244398|ref|NP_643980.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110058|gb|AAM38516.1| histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 578

 Score = 35.3 bits (80), Expect = 6.5,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 69/191 (36%), Gaps = 38/191 (19%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +     L+S D  +   S + H++ +P+ A+ N  +L++   +  +  +L++  + +A
Sbjct: 192 MQEVALQALASRDAQSHFISTMSHELRTPLNAVINCAQLIETEQMPAQQRELLQSVTANA 251

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                    + +V++       R+Q+      +       K + 
Sbjct: 252 TAL-------------------RHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAV- 291

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---------DGN 171
                A A+  +G  + + V   +  +     + G+  R  +  + +V          G 
Sbjct: 292 ----CATAASSKGVTLDVRVDSPQAPH-----VMGDEGRIEQVISNLVINAIKFTPAGGT 342

Query: 172 VESTIDSHDIQ 182
           V+  ID+  +Q
Sbjct: 343 VDLLIDATQVQ 353


>gi|322419476|ref|YP_004198699.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125863|gb|ADW13423.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 662

 Score = 35.3 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 77/222 (34%), Gaps = 23/222 (10%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----II 62
            L A+  L + + H+I +P+  I  + ELL     ED    E +  I             
Sbjct: 443 KLAAIGELAAGVAHEINNPMAIIRGNTELLQLCVPEDAPNREEVDTIFQQVKRVERIVSN 502

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRER 115
            LKF R            + L ++   I   +     ++        +     ++   ++
Sbjct: 503 LLKFAR----REQMEHGDVRLNELLHEIVGQLGHQVSLEGIEVVELYAGEVAVVEGDGDQ 558

Query: 116 AKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGNVE 173
            + +  NL + A  ++P GG + I      + +++ +K++        E   Q+ +    
Sbjct: 559 LRQVFTNLVLNAVQAMPEGGVLCIKSAPVGSGDLYEVKVSDTGVGIELENLRQVFNPFYT 618

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +   +       +  E+   +  E +       S +L +
Sbjct: 619 TKANGTGLGLSVSYGIVREHGGCIDVESVPGQGSSFSVILPR 660


>gi|70731912|ref|YP_261654.1| sensor histidine kinase KdpD [Pseudomonas fluorescens Pf-5]
 gi|68346211|gb|AAY93817.1| sensor histidine kinase KdpD [Pseudomonas fluorescens Pf-5]
          Length = 890

 Score = 35.3 bits (80), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 4/102 (3%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL----ARFPEKFTQIVDGNV 172
           ++L+NL   A    P G  V IS +    + I  +  +G      +     F     G  
Sbjct: 779 RVLVNLLDNAAKYTPAGTLVQISARQVDQQIILQVSDSGPGCPKGSSPASLFEAFSRGQQ 838

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ES +    +       +   +  R+  +   D  +     L 
Sbjct: 839 ESAVAGIGLGLALAKRIVEAHGGRIEAQPHADAGLSFVITLP 880


>gi|239996345|ref|ZP_04716869.1| histidine kinase [Alteromonas macleodii ATCC 27126]
          Length = 593

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           I H+  +PI AI ++LEL+    +E++  +LI+  +  +  RL
Sbjct: 252 ISHEFRAPISAIISALELI--PNMEEQRTRLIQQ-AEQSSYRL 291


>gi|170742982|ref|YP_001771637.1| histidine kinase [Methylobacterium sp. 4-46]
 gi|168197256|gb|ACA19203.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 544

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
           G V+ +  L    + + D + V   +       ++D ++     LLN+ + A  ++P GG
Sbjct: 247 GLVEGMRDL--ANRTLGDAVTVVTELAPELRNARLDPTQTEV-ALLNVLINARDAMPSGG 303

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            VTI  ++ +              RF           +   + +   + ++ 
Sbjct: 304 TVTIRTENREIGPDEIGPGLPPAGRFVAISITDTGTGMPPEVLARVTEPFFT 355


>gi|114765683|ref|ZP_01444782.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Pelagibaca bermudensis HTCC2601]
 gi|114542005|gb|EAU45039.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Roseovarius sp. HTCC2601]
          Length = 684

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 30/185 (16%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS------SMSAIIRLKFMRLAFG 72
           + HD  + + AI  SLEL+    + G  DE  + +  +      + +   RL    LAF 
Sbjct: 325 LAHDFNNLLTAIAGSLELITSRLDEGRTDEAHRFVEAALASTERAATVTQRL----LAFS 380

Query: 73  YTGSV-DSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAK-ILLN 121
              S+  +   +  + + +ED +      QVS         W      +   + +  LLN
Sbjct: 381 RRQSLLPAPTDVPALVRGMEDLVRRAIGPQVSVTTRFATDMW---PAMVDGNQLENALLN 437

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
           + + A  ++P GG + I   +            G   +          G     + +   
Sbjct: 438 ICLNARDAMPDGGLIEIEAGNETLSAGTEHLAAGAYVKL--SVRDSGSGMTPEQL-AKAF 494

Query: 182 QFYYV 186
             Y+ 
Sbjct: 495 DPYFT 499


>gi|312962944|ref|ZP_07777430.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
 gi|311282713|gb|EFQ61308.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
          Length = 747

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 94  IAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           +A++K + +S+  E             ++L NL   A    PR G + IS   +  E +F
Sbjct: 613 LAMEKGIDLSFNAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVF 672

Query: 150 SLKINGNLARFP--EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           S++ +G                   E+      +  Y    +   +  +++ E       
Sbjct: 673 SVRDSGEGIAPEQLPYVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGS 732

Query: 208 VLSALLEK 215
                + K
Sbjct: 733 EFRFTVPK 740


>gi|83643473|ref|YP_431908.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631516|gb|ABC27483.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 484

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 64/156 (41%), Gaps = 15/156 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSV 77
           I HD+ +P+  + + LELL +  + ++   +++     A   L+     +R+A   +G  
Sbjct: 253 IAHDLRTPLTRVRSRLELLCQKDLPEDARGVVQEIIGEADQLLQTFNALLRIARIESGGY 312

Query: 78  DSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILL----NLFMVAH 127
            +     D+  ++ D       +A DK   +S    +  + +    +L     NL   A 
Sbjct: 313 SANFSEVDLHGLVADAVELYEALAADKSQTLSLDLAQGIIVKGDRDLLFQAIANLLDNAI 372

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              P  G V + ++ + ++ + S+   G      E+
Sbjct: 373 KYTPVNGNVGVRLR-AFDQAVISIWDEGPGISEDER 407


>gi|27375414|ref|NP_766943.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|1834376|emb|CAA70860.1| RagB [Bradyrhizobium japonicum]
 gi|27348551|dbj|BAC45568.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 474

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 23/161 (14%)

Query: 22  ICHDIISPIGAIHNSLE--------LLDEVGIEDEVMQLIRLSSMSAIIRLKFM------ 67
           I HD+ +P+  +  +LE        L D   I D+ +  I  S       L+        
Sbjct: 242 IAHDLRTPLTRVRLALERGRTHAATLEDLQEITDKAIAGIDQSLAIVTALLRLTEIENNR 301

Query: 68  RLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL----NL 122
           R+A FG     +    L ++  V E  IA DKR+ +    E+         +L     NL
Sbjct: 302 RMAGFGEVALDEI---LREVCDVYEP-IAEDKRIALGVVIERNVQVWGDRDLLFEAVANL 357

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              A    P GG+V ++++      +  +   G   R  E+
Sbjct: 358 VDNAVKFTPSGGRVELALEAEDGTALVRVSDTGPGIREQER 398


>gi|90426074|ref|YP_534444.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90108088|gb|ABD90125.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 783

 Score = 35.3 bits (80), Expect = 6.7,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 24  HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGYTGSVDSL 80
           HD  + +  I  SL LL + +  +    +L+  +   A     L    LAF      +  
Sbjct: 425 HDFNNLLAVILGSLSLLKKWLPDDPRTSRLLDGALQGAERGATLTKRLLAF--ARRQELK 482

Query: 81  IGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAKI-LLNLFMVAHASL 130
           +   +I+++I D +          ++  + +    E + +   + ++ L+NL + A  ++
Sbjct: 483 LEAVEIQKLIPDMMDFLRQSLGPNINISIDIPPDVEPVKIDANQLELALMNLAVNARDAM 542

Query: 131 PRGGKVTISVQDSKNENI 148
           P GG + I+ ++    + 
Sbjct: 543 PSGGALVITCRNDGAASS 560


>gi|254465333|ref|ZP_05078744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Rhodobacterales bacterium Y4I]
 gi|206686241|gb|EDZ46723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Rhodobacterales bacterium Y4I]
          Length = 771

 Score = 34.9 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 74/195 (37%), Gaps = 25/195 (12%)

Query: 24  HDIISPIGAIHNSLELL---DEVGIEDEVMQLIR--LSSMSAIIRLKFMRLAFG-YTGSV 77
           HD  + + AI    +LL    + G +D    LI+   ++  A   +  + LAF       
Sbjct: 407 HDFNNLLTAISGHCDLLLLRHDQGDQDYG-DLIQIHENANRAASLVSQL-LAFSRKQTLQ 464

Query: 78  DSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASL 130
             ++ + D    +   +     ++V ++ + + +  S     R+  ++L+NL + A  ++
Sbjct: 465 PEILDVRDTLSDLTHLLNRLVGEKVTLTLSHDPVMKSIRADKRQLEQVLMNLVVNARDAM 524

Query: 131 PRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ-----FY 184
           P+GG++ +  +  + ++ +   +           +  +   +    I    +Q     FY
Sbjct: 525 PQGGEIRVETEVLALDKPLERDRATVPAG----DWVTVKVSDEGVGIAPDKLQKVFEPFY 580

Query: 185 YVILLAHENKIRLLP 199
                     + L  
Sbjct: 581 TTKRTGEGTGLGLST 595


>gi|310818980|ref|YP_003951338.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392052|gb|ADO69511.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 513

 Score = 34.9 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 33/226 (14%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIRL 64
           L  L    +++ HD+ +PI A+  + + L E   +          + L+          +
Sbjct: 280 LATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQVERLDRVV 339

Query: 65  -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------- 115
             + RL     G V+ L    D+ +++ED + +           +  L+R+         
Sbjct: 340 STYQRL-----GRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGDHD 394

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-----KINGNLARFPEKFTQIV 168
             A  L NL   A  ++PRGG +T+  +    +    +        G  AR  E   +  
Sbjct: 395 LLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTRE---RAF 451

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +   +V  +   +   +     + H  +L   L 
Sbjct: 452 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 497


>gi|148654389|ref|YP_001274594.1| histidine kinase [Roseiflexus sp. RS-1]
 gi|148566499|gb|ABQ88644.1| histidine kinase [Roseiflexus sp. RS-1]
          Length = 421

 Score = 34.9 bits (79), Expect = 6.8,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMRLAFGY 73
           L + + H+I +P+ AI N+L LL    + DE     + + +  +   I  ++ M   +  
Sbjct: 208 LTAALAHEINNPLQAIANTLYLLQHRPLSDEKRQRYLGMAQQETERVIASVRRMLDLYRS 267

Query: 74  TGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL---NLFMV 125
           +G     + L       I+Q  +        V+  +  + + +S     +     NL + 
Sbjct: 268 SGQGKRPVALHRILDQAIQQASDVLRERGIVVRCLYAPDDLRVSGFAGHLRFACYNLILN 327

Query: 126 AHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEK-FTQIVDGNVESTIDSHDIQ 182
           +  ++PRGG +TI    QD        ++         E    ++ D +     +++ I+
Sbjct: 328 SAYAMPRGGTLTIRTCWQDDDTAPSVVVEFADTGTLVDEADLPRLFDPDGPVRGEANGIE 387

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  ++   L  +  DD  V+    L 
Sbjct: 388 LPLSYSIIEQHHGTLTVQCTDDQ-VIFRVCLP 418


>gi|302344083|ref|YP_003808612.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301640696|gb|ADK86018.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 354

 Score = 34.9 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAK-ILLNLFMVAHASLPRGGKVT 137
           + +   +     A    V +            + + R + +LLNL   A  + PRG +V 
Sbjct: 208 VEEARSLAS-LFAEQSGVSLELELPPQPVEALIDKGRLRQVLLNLMQNAIQASPRGARVI 266

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197
           +S     +  + ++   G      E   +I +    +      +       +   +   +
Sbjct: 267 VSTAREGDFGLITVGDQGCGI-AAEDLARIFNPFFTTKRQGTGLGLAVAQKIVQAHGGGI 325

Query: 198 LPEIIDDHNVVLSALLE 214
                       +  L 
Sbjct: 326 ESRSAPGQGSSFTVRLP 342


>gi|307726033|ref|YP_003909246.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586558|gb|ADN59955.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 721

 Score = 34.9 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 17/136 (12%)

Query: 22  ICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA--IIRLKFMRLAFG-YTG 75
           I HD  + + AI ++L L+    + G   +V+ L+  +   A     L    LAFG    
Sbjct: 364 IAHDFNNMLQAIMSALSLIRVRLQQGRPTDVVTLVERAEKGAVRAATLTHRLLAFGRQQT 423

Query: 76  SVDSLIGL----GDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMVA 126
               L+ L     D+E +I   +     V++      W  +      +    L+NL + A
Sbjct: 424 LEPRLVSLDAIAHDMEDMIRRVVGSGINVELKLGDGMWLVQCD--PNQMESALVNLCVNA 481

Query: 127 HASLPRGGKVTISVQD 142
             ++P GG +TI+  +
Sbjct: 482 RDAMPEGGWLTITTSE 497


>gi|182435487|ref|YP_001823206.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326776124|ref|ZP_08235389.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Streptomyces cf. griseus XylebKG-1]
 gi|178464003|dbj|BAG18523.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326656457|gb|EGE41303.1| signal transduction histidine kinase regulating citrate/malate
           metabolism [Streptomyces cf. griseus XylebKG-1]
          Length = 563

 Score = 34.9 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +++   R    ++ NL   A  +       ++ + +       I  ++ +G      + 
Sbjct: 420 PDRVVDPRGLVTVMGNLVDNATDAAAGSERARIEVGLCAEGRTVILEVRDSGPGVPPEQH 479

Query: 164 FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   +G     + +H    +    V  LA     R+     D    V + +L +
Sbjct: 480 ASIFTEGWSTKEVPAHGKRGLGLALVRRLAERQGGRVTVSGADGGGAVFTVVLPE 534


>gi|117620003|ref|YP_854673.1| signal transduction histidine kinase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561410|gb|ABK38358.1| signal transduction histidine kinase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 471

 Score = 34.9 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 29/212 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L S I HD+ +PI  +   +ELLD+         + + ++L+      A+  +K      
Sbjct: 274 LFSSISHDLKTPITRLRLRVELLDDEQQIAKFNKDLDELELM---VKGALQTVK------ 324

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA--KILLNLFMV 125
                +   I   DI+ ++E         D+R+ +    ++    +  A  + + NL   
Sbjct: 325 --DTDIHENIEQLDIDAMLEQMAEAMNLHDERLTIEGHCKQPYRGKPLALKRCIGNLV-- 380

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG--NVESTIDSHDIQF 183
               +  G +V I + D +   I  +   G      + F +I +    + + +    +  
Sbjct: 381 -DNGIKYGQRVRIIIMDDEEMLILFIMDEGPGLPEDQ-FERIFEPYYRLSTDLAGTGLGL 438

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +AH +   L+ E      +  +  L +
Sbjct: 439 GIARNIAHAHGGDLVLENRPQGGLQATLSLPR 470


>gi|39995918|ref|NP_951869.1| nitrogen regulation protein NtrY [Geobacter sulfurreducens PCA]
 gi|39982682|gb|AAR34142.1| nitrogen regulation protein NtrY, putative [Geobacter
           sulfurreducens PCA]
 gi|298504932|gb|ADI83655.1| nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 748

 Score = 34.9 bits (79), Expect = 6.9,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 23/164 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSMSAIIRL---- 64
           +  RI H+I +P+  I  S + L         DE  + DE   +I  S       +    
Sbjct: 533 VARRIAHEIKNPLTPIQLSAQRLRKRYLPRFGDEDRVFDECTAMIVKSVDELKTLVDEFS 592

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAKIL 119
            F R+      +  S   L  + +          R              + L R++ K +
Sbjct: 593 NFARM----PAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQLDRDQIKRV 648

Query: 120 L-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             NL   A A++   G+V I  +      +  + +       P 
Sbjct: 649 FINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGIPP 692


>gi|239943793|ref|ZP_04695730.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239990246|ref|ZP_04710910.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 509

 Score = 34.9 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 17/207 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRL----KFMRLAFGYT 74
           H++ +P+ AI    E+L++       +    + L+   +      +    +  R   G  
Sbjct: 283 HELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVSETRRLNDLVENLMEVTRFDAGTA 342

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRG 133
             V   + + D      D  A    V +    E+  ++R +  ++ + L  +   +L  G
Sbjct: 343 RLVLDDVDVADQVTACIDARAWLDAVHLD--AERGMMARLDPRRLDVILANLIGNALKHG 400

Query: 134 GK-VTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVEST-IDSHDIQFYYVIL 188
           G  V + V+    E +  ++ +G        P  F +    +      +   +     + 
Sbjct: 401 GSPVGVRVRTEGEELVIEVRDHGPGIPEEVLPHVFDRFYKASASRPRSEGSGLGLSIAVE 460

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLEK 215
            AH +   +      D   V +  L +
Sbjct: 461 NAHIHGGDISAANSPDGGAVFTLRLPR 487


>gi|242281125|ref|YP_002993254.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242124019|gb|ACS81715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 791

 Score = 34.9 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 17/198 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMS 59
           +     S M+ +  L   + HD  + +  I +S+ELL     ED      + LI  +S  
Sbjct: 410 DQSMQTSKMEAIGQLAGGVAHDFNNMLSGIFSSVELLRRKLPEDPKVRKYLDLIFDASKR 469

Query: 60  AIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---S 112
           +       L F R     + ++++   +    ++++  I     + +    E + +    
Sbjct: 470 SADLTHKLLSFARKQPAVSTAINAHDSILAAVEILKKTIDRRIDINIISNSEPMMIIGDP 529

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI----V 168
                + +NL + A  ++P GG + I  +    + ++           P  F  +     
Sbjct: 530 SMIQSLFINLGINASHAMPDGGTINIECKTVDLDPVYCEVS--PFEVSPGVFLDVEFCDS 587

Query: 169 DGNVESTIDSHDIQFYYV 186
              +   +  H  + ++ 
Sbjct: 588 GTGIPKDVLPHIFEPFFT 605


>gi|162455389|ref|YP_001617756.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161165971|emb|CAN97276.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 506

 Score = 34.9 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 71/215 (33%), Gaps = 27/215 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSS----MSAIIRLKFMRLAFGYT 74
           HD+ +P+ A+  S+  L++ G   E      M L+              L   ++     
Sbjct: 294 HDLRNPLSALRLSVGFLNDGGPPSEPRVQRTMALVGRQVDRLERMVGDLLDASQIEACKL 353

Query: 75  GSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHAS 129
                   L + +++  E +  V     +  +  +  +       R + +LN  +    +
Sbjct: 354 DLRVEERDLRELVQEAAELYRPVSPEHPIDLSLPEAPVLVRCDATRIQQVLNNLL--SNA 411

Query: 130 L---PRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHD 180
           L   P GG++ ++V         +++  G      +LA   E F ++        I    
Sbjct: 412 LKYSPAGGQIDVAVHGGAGRAEIAVRDRGVGIEAADLAHLFEPFQRL--KASAGAIPGTG 469

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +       +   +  RLL E       V    L +
Sbjct: 470 LGLAVAKRIVEAHGGRLLVESEPGAGSVFRVELPR 504


>gi|269957270|ref|YP_003327059.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305951|gb|ACZ31501.1| histidine kinase [Xylanimonas cellulosilytica DSM 15894]
          Length = 347

 Score = 34.9 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 68/178 (38%), Gaps = 17/178 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------AIIRLKFMRLA 70
           L + + H++ +P+ A+   LE + + G+ +     + LS              L   R+ 
Sbjct: 118 LIANVSHELRTPVAALQAQLENMVD-GVTEPTPATLELSLAQTERLTRLVTYLLDLSRVE 176

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKI---LLNL 122
            G +    S + +GD+ +     ++      + R  V  T   + L  +  ++   ++NL
Sbjct: 177 AGASALTISELAVGDLLEECAQSLSMVEAVKNLRYVVDVTPSDLVLEADAERLRQIVVNL 236

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
              A    P GG++ +      ++ +  +  +G     PE   ++ +      + +  
Sbjct: 237 LQNAIRHSPPGGEIRLDAYPEGDDVVIEVADDGPGI-APEDRDRVFERFARGKVTASG 293


>gi|197122092|ref|YP_002134043.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196171941|gb|ACG72914.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 844

 Score = 34.9 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAI----IRLKFMRLAFGY 73
           + H++ +P+  I N++ LL          +    +I   +          L   R+ FG 
Sbjct: 477 LSHELRNPLAPIRNAVYLLHHAPPGGPQAERARAVIERQADHLAKLVDDLLDLSRVNFGK 536

Query: 74  TGSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMV 125
                +++   ++  +  +D   +  ++   +    +   +         A+I  NL   
Sbjct: 537 IALQRTVLDAREVVRRTCDDLRPLFDERGPALHLDLDDQPVWVDADPTRLAQIAGNLLTN 596

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKING 155
           A    P GG+V ++V+      +  ++  G
Sbjct: 597 AAKFTPPGGRVAVTVRAEGGSCVLRVRDTG 626


>gi|115374332|ref|ZP_01461616.1| FrgB [Stigmatella aurantiaca DW4/3-1]
 gi|115368642|gb|EAU67593.1| FrgB [Stigmatella aurantiaca DW4/3-1]
          Length = 504

 Score = 34.9 bits (79), Expect = 7.0,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 33/226 (14%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIRL 64
           L  L    +++ HD+ +PI A+  + + L E   +          + L+          +
Sbjct: 271 LATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQVERLDRVV 330

Query: 65  -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------- 115
             + RL     G V+ L    D+ +++ED + +           +  L+R+         
Sbjct: 331 STYQRL-----GRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGDHD 385

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-----KINGNLARFPEKFTQIV 168
             A  L NL   A  ++PRGG +T+  +    +    +        G  AR  E   +  
Sbjct: 386 LLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTRE---RAF 442

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +   +V  +   +   +     + H  +L   L 
Sbjct: 443 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 488


>gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 997

 Score = 34.9 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 86  IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQ 141
              ++   +    R+ V  +  ++D  R  A    +++LNL + A  ++P GG +T+   
Sbjct: 710 ARGMLRWLLGEGVRLVVK-SDPRLDRVRADAGHVEQVILNLAVNARDAMPHGGTLTVGTA 768

Query: 142 D--SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
           +  S   +       G   R            +   I +   + ++ 
Sbjct: 769 NVTSDGPSGPGRVPAGRYVRLS---VADTGVGMTEEIQAKIFEPFFT 812


>gi|162449217|ref|YP_001611584.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161159799|emb|CAN91104.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 484

 Score = 34.9 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 54/162 (33%), Gaps = 29/162 (17%)

Query: 19  CSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---- 70
             R+ HD++SP+GA+  SL+L     DE     + ++            L+  R+     
Sbjct: 254 AGRVAHDVLSPLGAVALSLDLALRRFDEGDPARKGLE------RGRQAILRVKRMTDGLL 307

Query: 71  -FGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDLSRERAKILLN 121
            F   G+        ++  +I+D +         +   ++V         +       + 
Sbjct: 308 EFARAGASPEPGARAEVHLIIDDLMVELVPVAVELGAELRVEPFAPCAVAASPGVLTSIL 367

Query: 122 LFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLA 158
             ++   +L   G      V I V D +      ++  G   
Sbjct: 368 ANLI-RNALKYLGDAAVCRVVIRVLDGREAVRIEVEDTGPGV 408


>gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 556

 Score = 34.9 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 79  SLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL-----SRERAKILLNLFMVAHASL 130
           + + + DI Q +   IA   +   +Q+ +  +         +R   +IL+NL   A    
Sbjct: 248 TPVSVHDICQSLRPMIADMAKRAGLQLVYDLDPTVQVMLADARRLRQILINLLSNAIKFT 307

Query: 131 PRGGKVTISVQDS--KNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQ 182
           P GGKV + V+    +    F++   G      + AR  E F QI     +  +    + 
Sbjct: 308 PAGGKVGLEVRGDAERGAVRFTVWDTGIGISAEDAARLFEPFQQIESERQKE-VTGSGLG 366

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  LA  +   +  E            L 
Sbjct: 367 LALVAKLARLHGGSVSLESEVGVGSRFHVTLP 398


>gi|254474457|ref|ZP_05087843.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. R11]
 gi|214028700|gb|EEB69535.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. R11]
          Length = 659

 Score = 34.9 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 31/208 (14%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAII----RLKFM 67
           + + + H+I +P+  I  +++++      +        + LI    +         L+F 
Sbjct: 432 ITAGVAHEINNPVAVIQGNVDVVRMTLPPEAGAEVATELDLIDNQILRISAIVGKLLQFA 491

Query: 68  RLA-FGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDL----SRERAKIL 119
           R + FG   + +  + +  +     V+ D +   + + V    E          E  +++
Sbjct: 492 RPSEFG---TFEESLDMAPVVSDCLVLVDHVVTKQAITVEKDFETSPQVRIDPGELQQVV 548

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           +NL + A  ++   G +T+++++  ++        G      +         +   +   
Sbjct: 549 INLILNAAQAMGGSGTLTLTLRELDHDG-----APGACLTVAD-----TGPGIAEDVLPS 598

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNV 207
               +Y   L     + L         V
Sbjct: 599 VFNPFYTTRLGEGTGLGLSISQTLIQRV 626


>gi|114327402|ref|YP_744559.1| two component system histidine kinase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315576|gb|ABI61636.1| two component system histidine kinase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 478

 Score = 34.9 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
             + S I HD+ +PI  +    E +D+  +   ++  +          L     AFG   
Sbjct: 271 TFILSAIGHDLRTPITRLKLRAEFIDDEELRRRMIADLDELEEMVSATL-----AFGRDA 325

Query: 76  SVDSLIGLGDIEQVIEDFI--AVDKRV----QVSWTGEKIDLSRERA----KILLNLFMV 125
            +   + L D+ ++ +  +  AVD R     ++ + G      R R     + + NL   
Sbjct: 326 DMQEPMVLLDLPELAKTILDEAVDARPDYTERLHYIGPDHLPVRGRTLPLKRAITNLL-- 383

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + +L  GG  TI +  S    +  + I       P 
Sbjct: 384 -NNALAYGGSATIRISLS-VNGMVRMDIEDEGPGIPP 418


>gi|78186714|ref|YP_374757.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166616|gb|ABB23714.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 698

 Score = 34.9 bits (79), Expect = 7.1,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 22/179 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS-LELLDEVGIEDEV----MQLIRL 55
           M + +  +   ++LV  L   I HD  + + AI    +E+L +   E       ++ I  
Sbjct: 324 MQEQLNQS-QKLELVGQLAGGIAHDYNNML-AITLGHVEMLLDQVPESHPFFNGLKAILN 381

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKI 109
           S+  ++      L F R          +++ L  + +     +  A+ + +   W     
Sbjct: 382 STERSVAITSQLLAFAR----KQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPA 437

Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +  +ILL L + A  ++   G +TI+  +        L ++   +   E+
Sbjct: 438 INSISIDPGQFDQILLILCLNARDAIKENGTITINAGEGTTPGYAVLTVSDTGSGINER 496


>gi|254490946|ref|ZP_05104128.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224463855|gb|EEF80122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 533

 Score = 34.9 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + L +L  L + I H+I +P+GAI ++ ELL E    D  M  +  
Sbjct: 307 LKLASLGRLTASIAHEIRNPLGAISHAGELLAEKQASDPSMSKLTD 352


>gi|163746891|ref|ZP_02154248.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161380005|gb|EDQ04417.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 502

 Score = 34.9 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 30/175 (17%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI-------IRLKFMRL 69
           S + H++ +P+ +I  SLE+L       +     +L+ +++ +A          L F R+
Sbjct: 271 STVSHELRTPLTSIKGSLEMLKSGKIIDLSGAAERLVGMAAKNANILNLLVNDLLDFERI 330

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDL-----SRERAKI 118
               TG+++      DI  +++D I        ++ V+  ++G +  L         A+I
Sbjct: 331 ---DTGNLEVTKRPSDIVGIVKDEIETMKSYDTEQEVEYFYSGVEGPLVAHVDPDRIAQI 387

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQI 167
           + NL   A    P+GGK+ +SV+         +  +G      +  R  +KFTQ+
Sbjct: 388 VRNLLSNAVKFSPKGGKIVVSVRKEAQSVRVDVADSGCGISKVDCVRIFDKFTQV 442


>gi|66046584|ref|YP_236425.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63257291|gb|AAY38387.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 646

 Score = 34.9 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 19/137 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LSSMSAIIRLKFMRLAFGYT 74
           I HD  + +  I  SLELL     +    +L R        S  +A +  +   LAF   
Sbjct: 280 IAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGAAQDASKRAASLTHRL--LAFSRR 337

Query: 75  GSVDSL--------IGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            ++D          IG+ + I + +   I ++    V      ID  +     LLNL + 
Sbjct: 338 QTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGLWSTFIDAPQLE-NALLNLCIN 396

Query: 126 AHASLPRGGKVTISVQD 142
           A  ++PRGG++TI   +
Sbjct: 397 ARDAMPRGGRITIETAN 413


>gi|116686340|ref|YP_839587.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
 gi|116652055|gb|ABK12694.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia HI2424]
          Length = 425

 Score = 34.9 bits (79), Expect = 7.2,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 22/223 (9%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
             ++  +   +L S I HD+ +PI  +    +LL + G  +  ++     S      L F
Sbjct: 206 LAVAERERAVMLAS-IAHDLRTPITRMQVRADLLTDRGDREGFLRDTESMSRVITQFLDF 264

Query: 67  MRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
            R      GS    +         D      D    D  V +        +        +
Sbjct: 265 AREI--PEGSPQISVDTHCRRDYTDALSPSGD-AHRDALVTLDLHAGPDFML-PAVDIDR 320

Query: 118 ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173
           +L NL      +L  G   V I+ +         ++ +G     P+        V  +  
Sbjct: 321 MLSNLV---ENALTYGEPPVEIATRARGEHYELVVRDHGPGVSEPDLDRVLRPFVRLDPA 377

Query: 174 STIDSHD-IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               SH  +    V  L   +   L      D  +V+     K
Sbjct: 378 RGGTSHSGLGLAIVHRLVRHHGGTLHMSNAADGGLVIVMRFPK 420


>gi|330880810|gb|EGH14959.1| sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 177

 Score = 34.9 bits (79), Expect = 7.3,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 55  LSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            S+  A       L F R      G+VD    +  +E+++   +    ++ V        
Sbjct: 39  SSANRAAALTQRLLTFARRQSLSVGTVDINCMVRSMEELLRGTVGNHAQLHVELEEGLGA 98

Query: 111 LSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  ++   LLNL + A  ++P  G + +     +      +   G+  R 
Sbjct: 99  IQTDEHQLENALLNLVINARDAVPVAGLIRVRSHALRLVAQDGVLAAGDYVRL 151


>gi|269216463|ref|ZP_06160317.1| putative sensory transduction histidine kinase [Slackia exigua ATCC
           700122]
 gi|269129992|gb|EEZ61074.1| putative sensory transduction histidine kinase [Slackia exigua ATCC
           700122]
          Length = 528

 Score = 34.9 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 15/159 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71
           L + + H++ +P+ AI +++E + +   E +  +L      ++  S      LK  RL  
Sbjct: 278 LTTDVAHELRTPLMAIQSTVEAIVDGVFEPDAERLGTIDAEVQRLSRMVDALLKLSRLEN 337

Query: 72  GYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDL---SRERAK-ILLNLF 123
             T   + ++ +G++ +++    E +I+    +Q+ +  E   +    R+  +    NL 
Sbjct: 338 RTTPLNEEVVNVGEMIRLLAMSHEAYISEAG-LQLVYEAEDDVVVYADRDLIRQATANLI 396

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             A    P  G +T+SV+ S +E + +++  G      E
Sbjct: 397 SNAVRYTPAPGTITVSVKKSDDEAMIAVQDTGVGLTPEE 435


>gi|222087617|ref|YP_002546154.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221725065|gb|ACM28221.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 452

 Score = 34.9 bits (79), Expect = 7.4,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 22/191 (11%)

Query: 42  EVGIEDEVMQLIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAV 96
           +    DE +Q +R S+      A   L   R   G        I L     +V+E+    
Sbjct: 264 DNARRDEALQALRSSTKQVTRLASQLLTLSRAEPGSRRPRSDTIELAATARRVLENLAEE 323

Query: 97  DKRVQVSWTGEKIDLS------RERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
             R  +    E               + +L+NL   A    P  G+VT+ V    ++ + 
Sbjct: 324 ALRHNIDLGLEAGSTPIHVEGDGMMLREMLVNLVDNALRYTPANGRVTVGVARDGDDAVL 383

Query: 150 SLKINGN------LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           +++ NG        A+  E+F +I+    E +     I    V  +       +      
Sbjct: 384 TVEDNGPGIPESERAQVFERFYRIIGTEPEGSGLGLAI----VREVVDGAGGSVTLGDAA 439

Query: 204 DHNVVLSALLE 214
           +  ++++  L 
Sbjct: 440 EGGLLVTVRLP 450


>gi|221640765|ref|YP_002527027.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221161546|gb|ACM02526.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 887

 Score = 34.9 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%)

Query: 4   NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54
            +  +L    L A        LL S + HD+ +P+  I  +   L E G    E  Q + 
Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +      R        L   RL  G          L ++       +A   R     T 
Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764

Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              DL           ++L+N+   A    P G  +T++ +      + S+   G     
Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824

Query: 161 PEK 163
            ++
Sbjct: 825 ADR 827


>gi|90419214|ref|ZP_01227124.1| PAS sensor histidine kinase/response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336151|gb|EAS49892.1| PAS sensor histidine kinase/response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 671

 Score = 34.9 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 64/190 (33%), Gaps = 15/190 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSMSAI--IRLKFMRLAFGY-TGS 76
           I HD  + + A+  SLE+  + VGI+   +Q LI  +   A     L    LAF      
Sbjct: 301 IAHDFNNLLTAVIGSLEMARKRVGIDPPAVQSLIDNALEGARRGASLTQRMLAFARRQDL 360

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERAKILLNLFMVAHAS 129
               + L ++   I  F+      ++S                 +    LLNL + A  +
Sbjct: 361 APRTVDLAELVAGITAFLERSIGPELSIETRFPAGLSPAHIDPNQLETALLNLMVNARDA 420

Query: 130 LPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           +  GG VTI   ++  E         G   R         +G    T+      F+    
Sbjct: 421 MDGGGVVTIEADEAAIEVARPGGLAVGRYVRL--AVIDTGEGMDAETVKRAAEPFFTTKG 478

Query: 189 LAHENKIRLL 198
           +     + L 
Sbjct: 479 VGKGTGLGLS 488


>gi|23501996|ref|NP_698123.1| nitrogen regulation protein NtrB [Brucella suis 1330]
 gi|256369545|ref|YP_003107055.1| nitrogen regulation protein NtrB [Brucella microti CCM 4915]
 gi|23347947|gb|AAN30038.1| nitrogen regulation protein NtrB [Brucella suis 1330]
 gi|255999707|gb|ACU48106.1| nitrogen regulation protein NtrB [Brucella microti CCM 4915]
          Length = 367

 Score = 34.9 bits (79), Expect = 7.5,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 34/216 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQ-LIRLSSM---SAIIRLKFMRLAFG 72
           L S + H+I +P+  I  + +LL++ V  ED  +  LI   +    S + R++       
Sbjct: 126 LASMLAHEIKNPLSGIRGAAQLLEQVVSDEDRALARLITEETDRIVSLVDRMEVF----- 180

Query: 73  YTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              S +  I          L  ++ +  +  A   R    +      +   R    ++ L
Sbjct: 181 ---SDERPIERTAVNIHAVLDHVKAIARNGFARKIRFSEDYDPSLPPVYANRDQLVQVFL 237

Query: 121 NLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQIVDGN-VEST 175
           NL   A  ++    GG++ +S   +       L++ G   R   P +F    +G  V   
Sbjct: 238 NLVKNACEAMGGRDGGEIVLS---TAYRPGIRLQVPGARDRVALPLEFCVHDNGPGVPQD 294

Query: 176 IDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLS 210
           +  H    +           + L+ +II DH  ++ 
Sbjct: 295 MLPHLFDPFVTTKTNGSGLGLALVAKIIGDHGGIIE 330


>gi|322417640|ref|YP_004196863.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320124027|gb|ADW11587.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 498

 Score = 34.9 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV--MQLIRLSSMSAIIRLKF------ 66
           +LL S I HD+ +P+ AI  +L  +L+E G  +     +L+  +   A    +F      
Sbjct: 274 SLLNS-ISHDLRTPLTAITGALSAVLEEGGKLNPAARAELLETAREEAARLNRFVGNLLD 332

Query: 67  -MRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKILLNL 122
             RL  G          + D+     + +        V V    +   +  +   +L  L
Sbjct: 333 MTRLEAGVLQLKREPCDVQDLVGCALNAVEQRLAGVEVSVRLPRDLPLVPLDFVLMLQVL 392

Query: 123 FMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
             +   +L     GG + I  + +       +   G      +    F +     V   +
Sbjct: 393 VNLLDNALKHGGAGGTIEIGARVAGERLALEVADRGPGVPAEDLNRIFEKFYRTPVPEVV 452

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  +  +   + +   + 
Sbjct: 453 GGTGLGLSICRGIVEAHGGSIRAQSREGKGLKIVVEMP 490


>gi|160901352|ref|YP_001566934.1| osmosensitive K+ channel signal transduction histidine kinase
           [Delftia acidovorans SPH-1]
 gi|160366936|gb|ABX38549.1| osmosensitive K+ channel signal transduction histidine kinase
           [Delftia acidovorans SPH-1]
          Length = 904

 Score = 34.9 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 17/216 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+     +    +   L S + HD+ +P+  I  + E             ++    + A
Sbjct: 665 VAQQTQIAMEGERMRNTLLSAVSHDLRTPLTTILGAAEAAQRHVPPGGAADMLEQVRIQA 724

Query: 61  II-------RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112
                     L   RL  G        + L ++    +    A   +  VS         
Sbjct: 725 QAMQRLVENLLDMARLQQGGVHLQREWLPLDEVVGSALRQMRARLGQHLVSTDVPASLPL 784

Query: 113 RERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       ++L+NL   A    P G  + IS +    E + S++  G           +
Sbjct: 785 LQLDALLMERVLVNLLDNAAKYTPAGTPLAISARVQDGELLLSVRDGGPGLPSHLPVETL 844

Query: 168 VD----GNVESTIDSHDIQFYYVILLAHENKIRLLP 199
            +    G  EST+    +    V  +   +  R+  
Sbjct: 845 FEPFTRGTAESTVSGIGLGLALVRSIVEAHGGRIEA 880


>gi|188580835|ref|YP_001924280.1| histidine kinase [Methylobacterium populi BJ001]
 gi|179344333|gb|ACB79745.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 541

 Score = 34.9 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 30/171 (17%)

Query: 37  LELLDEVGIEDEVMQLIRLSSMSAI---IRLKFMRLAF--------------GYTGSVDS 79
           L LL+   ++   M+    +  +A     +L    LAF              G   S+  
Sbjct: 190 LALLEHPSLDVARMRRAGEAVRAATDRAAKLTHQLLAFSRKQRLEGRLLNLNGLVESMGE 249

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
           + G      + +D +         WT  +ID ++     LLN+ + A  ++P GG VT+ 
Sbjct: 250 MAG----RTLGDDIVLKSVLAPDLWT-TRIDPTQAEV-ALLNVLLNARDAMPDGGTVTVR 303

Query: 140 VQ----DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            +    + ++  ++     G         T +    + S I S  ++ ++ 
Sbjct: 304 TENLLIEDEDTALYKTVPPGAYVVISVTDTGL---GMPSEILSRVMEPFFT 351


>gi|83593741|ref|YP_427493.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
 gi|83576655|gb|ABC23206.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Rhodospirillum rubrum ATCC 11170]
          Length = 1301

 Score = 34.9 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 69/196 (35%), Gaps = 23/196 (11%)

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIE----- 91
           ++  +     +++ + + +A + L+     + +A    G +       D+ ++       
Sbjct: 242 EDPTLAPAEKRVLDMVARNARLLLRHVNDLLDIAKLEAGQMRMQYVRTDVTRLCRFALSH 301

Query: 92  -DFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146
            D +A ++ +  +     +        +  ++LLNL   A    P  G++T+S+ D  ++
Sbjct: 302 FDSLAEERAIAFTLEAPAVLWAEIDPEKFRRVLLNLLSNAFKFTPNQGEITVSLIDRGDD 361

Query: 147 NIFSLKINGNLARFPEKFT-------QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP 199
            I  +  NG     PE          + VDG  +       +    V      +   +  
Sbjct: 362 VILRVSDNGPG--IPESMWTAVFERFRQVDGGSDRRHGGTGLGLAIVREFVDLHGGEVSI 419

Query: 200 EIIDDHNVVLSALLEK 215
               +     + +L K
Sbjct: 420 GQASEGGAAFTVVLPK 435


>gi|83312445|ref|YP_422709.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947286|dbj|BAE52150.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 280

 Score = 34.9 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 8/145 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +PI  +    E +D+     +++  +          L F R            +
Sbjct: 81  ISHDLKTPITRLRLRAEFMDDDDQRAKMLSDLEEMEAMIASTLAFARD--DAASEPRLRL 138

Query: 82  GLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTI 138
            L   ++ ++ED   +  R         +  +R  A  + L N+      ++  GG   +
Sbjct: 139 DLAAMLQGMVEDLDDLGARCSYEGPQSLVLEARPAALKRALSNVI---DNAIKYGGSAAV 195

Query: 139 SVQDSKNENIFSLKINGNLARFPEK 163
           +++ S  E   ++   G        
Sbjct: 196 ALETSGREARITIDDQGPGIPAEAH 220


>gi|85703304|ref|ZP_01034408.1| sensor histidine kinase [Roseovarius sp. 217]
 gi|85672232|gb|EAQ27089.1| sensor histidine kinase [Roseovarius sp. 217]
          Length = 428

 Score = 34.9 bits (79), Expect = 7.6,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 53/153 (34%), Gaps = 17/153 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L+ S + HD+ +P+  +   L +LD     +E   ++R       +   F+  A G   
Sbjct: 225 TLMLSGVSHDLRTPLTRLRLGLAMLD----HEEAAPMLRDVVDMERLLDGFLAFARGAHE 280

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKIDLSRERAKILLNLFMVAHA 128
                I   D   ++   +   +R QV          G          + + NL    + 
Sbjct: 281 GEAEPIDPID---LVRQIVEDSQRAQVPVALVETRGEGSIALRPANIRRAVENLI---NN 334

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++  G +  +SV  ++      ++ +G      
Sbjct: 335 AVRYGSRAEVSVVMTEKSLRIRVEDDGPGIPPD 367


>gi|239813974|ref|YP_002942884.1| histidine kinase [Variovorax paradoxus S110]
 gi|239800551|gb|ACS17618.1| histidine kinase [Variovorax paradoxus S110]
          Length = 475

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 21  RICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS----MSAIIRLKFMRLA 70
            + H++ +P+ A+   + LL++         + EV Q++  ++          L+F   A
Sbjct: 259 HVSHELKTPLAALREGVSLLEDGVTGPLNPAQLEVAQILNQNTVSLQGQIEALLRFNAAA 318

Query: 71  FGY---TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
           F           L+ L + +   +        ++V   GE I L  +RAK+   +  +  
Sbjct: 319 FEARELRRERTDLLPLVEEQIEAQRLQWQAHGLRVHAEGESITLPVDRAKLGTAVANLLS 378

Query: 128 ASL---PRGGKVTISVQDSKNENIFSLK------INGNLARFPEKF 164
            ++    RGG ++I V  +       +         G+  R  E F
Sbjct: 379 NAIRYSARGGVISIVVSGTPTTACIDINDAGPGIAEGDRDRIFEPF 424


>gi|213970405|ref|ZP_03398534.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301381188|ref|ZP_07229606.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058545|ref|ZP_07250086.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302132601|ref|ZP_07258591.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924876|gb|EEB58442.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
          Length = 423

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 13/152 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIR----LKFMRLAF 71
           I HD  + +  +  +L+++         G  D  +     S+  A       L F R   
Sbjct: 200 IAHDFNNMLSGVLGALDMIRMRIGAQRFGEVDRYVDAAVSSANRAAALTQRLLTFARRQS 259

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHA 128
              G+VD    +  +E+++   +    ++ +        +  +  ++   LLNL + A  
Sbjct: 260 LSVGTVDINCMVRSMEELLRGTVGNHAQLHIELEEGLSAIQTDEHQLENALLNLVINARD 319

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           ++P  G +++  Q  +          G+  R 
Sbjct: 320 AVPVAGLISVRSQALRLVAQEGALAAGDYVRL 351


>gi|254446376|ref|ZP_05059852.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260684|gb|EDY84992.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 527

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLKFMR 68
           ++ A +  R  HD  + I  I++  EL  E G +     E M  IR  ++ A    + +R
Sbjct: 157 EIAATMTRRFLHDFNNTIAGIYSLSELYAEPGSDPKSTAEAMGHIRDCAVRAQDLTRKIR 216

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS 112
                    +S   LG + +  ++F+     K  ++ +  E  +  
Sbjct: 217 YLTSLEAGQESYFDLGKLLEEQQEFMEALLPKGSEIHFQIEPGEHP 262


>gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1178

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTIS 139
           + + E+++   I  D  +      E   +     +  ++L+NL + A  ++P GG++T+ 
Sbjct: 897 VAEAERLLRRLIGEDIELTTVADPELAQVVADPGQAEQVLMNLVVNARDAMPTGGRLTVE 956

Query: 140 VQDSKNENI 148
             + + +  
Sbjct: 957 TSNVERDGA 965


>gi|159899317|ref|YP_001545564.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892356|gb|ABX05436.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 490

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 19/160 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---IRLK-----FMRL 69
           L + + H++ +P+ A+  +LE+L    + +   +L+  S         RL       + L
Sbjct: 250 LTADVSHELRTPLAAMRGNLEVLRRGAMRNP--ELLNESLSDLEREVARLNRLVNDLLFL 307

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDL-SRERAK-ILLN 121
           A    G       + +++ +I +        A   ++Q+    +   +  R+R K  +LN
Sbjct: 308 AQTEAGVQMRSEPV-ELDTLILEVFRELRPLAEHVKLQIGSEDQATVIGDRDRLKQAMLN 366

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           L   A    P GG VT+S++    E    ++  G      
Sbjct: 367 LAYNAIQHTPEGGAVTLSLERVGREVALRVQDTGEGIPPD 406


>gi|152989700|ref|YP_001347434.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150964858|gb|ABR86883.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 431

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 24  HDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSS---MSAIIRLKFMRLAFGYTGSVD 78
           H++ +P+  I  +LELLD+ G       +Q IR S+         L ++      +    
Sbjct: 245 HELRTPLAVIGMNLELLDQPGHPPSPHALQRIRRSALDMRQMTETLLWL------SREGG 298

Query: 79  SLIGLGDIE--QVIEDFIAVD------KRVQVSWTGEKIDLSRERAKILL-NLFMVAHAS 129
            L   G IE  +++ED +         + +      E   L + RA+I++ NL      +
Sbjct: 299 ELRDDGHIEVGRLLEDLLEEQQTLSQRRGLSFQLDVEPHSLPQTRARIIIGNLL---RNA 355

Query: 130 LPRG--GKVTISVQD 142
           L     G V I V+D
Sbjct: 356 LQYSDEGVVEIVVRD 370


>gi|78066345|ref|YP_369114.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
 gi|77967090|gb|ABB08470.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
          Length = 461

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 70/206 (33%), Gaps = 27/206 (13%)

Query: 24  HDIISPIGAIHNSLEL------LDEVGIEDEVMQL-IRLSSMSAIIRLKFMRLAFGYTGS 76
           H++ +P+ A+    E+      L +       +   +  S+  +   L+  RL  G    
Sbjct: 241 HELRTPLAALSAQAEVALQADSLADKNDALRRLATGVERSARLSGQLLELARLDAGSRAD 300

Query: 77  VDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR- 132
               + L  +  +I    D  A  +R  +    E + +  +  +I + +  +   +L   
Sbjct: 301 QHGPVDLSRLVALIASDFDAAAHARRQTMRIAVEPVRVWGDLDEIAIAVRNLIDNALRYG 360

Query: 133 --GGKVTISVQDSKNENIFSLKIN----------GNLARFPEKFTQIVDGNVESTIDSHD 180
             GG+V I+     + +   +++           G   R  E+F ++       +     
Sbjct: 361 RDGGRVEITCDSPADADGGRVRLRIADDGPGVPLGERERIFERFYRVPGTVQPGS----G 416

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHN 206
           I    V  +A  +   +      + N
Sbjct: 417 IGLSLVARIAESHGGSVEVAAGIEGN 442


>gi|77460155|ref|YP_349662.1| periplasmic sensor Signal transduction histidine kinase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384158|gb|ABA75671.1| putative two-component system sensor histidine kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 441

 Score = 34.9 bits (79), Expect = 7.7,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 13/153 (8%)

Query: 24  HDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGYTGSV 77
           H++ SP+ AI   L++  + +    D+ +      +     +    L   R+    +   
Sbjct: 235 HELRSPLTAIKTHLQVARMTDGSARDQSLARAEEGADRLHRTLEQLLLLARVEGSLSFDD 294

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------RAKILLNLFMVAHASL 130
                   + ++     A D+R ++     +   +             L NL   A    
Sbjct: 295 GVQCSAEQVAKLAIQDSASDQRQRIRLHLPEHLSAAPLQMPAVLSIAALRNLLDNALRHT 354

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           P  G V +S++ S N   F ++ +G      + 
Sbjct: 355 PTDGAVDLSLETSANRVRFVVRDHGPGIAPDDL 387


>gi|312961364|ref|ZP_07775869.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens WH6]
 gi|311285022|gb|EFQ63598.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens WH6]
          Length = 724

 Score = 34.9 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 19/138 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRLKFMRLAFGYTG 75
           I HD  + +  I  SL+L+          ++ R       S+  A      + LAF    
Sbjct: 354 IAHDFNNMLTGIIGSLDLMQRYIAAGRSEEIGRFTDAAVSSAHRAAALTHRL-LAFSRRQ 412

Query: 76  SVD-SLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLFMV 125
           S+D   +    +   +ED     K   +          W         E A  LLNL + 
Sbjct: 413 SLDLRPLDPNQLVASLEDLFQRTKGAHIHLKVQLGQDIWPVNTDASQLENA--LLNLVIN 470

Query: 126 AHASLPRGGKVTISVQDS 143
           A  ++P GG++ I   +S
Sbjct: 471 ARDAMPDGGELLIETANS 488


>gi|325917156|ref|ZP_08179386.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325536636|gb|EGD08402.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 763

 Score = 34.9 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRLSSMSAIIRLKFMRLAFGYTGS 76
           + HD  + +  +  +LEL+     +    +L     I  S+ +    L    LAF     
Sbjct: 397 LAHDFNNLLAGVSGALELMTLRMEQQRFAELPRYLGIAQSATTRAAALTHRLLAF--ARR 454

Query: 77  VDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSR--ERAKI---LLNLFMVA 126
              L    D+ Q+I D + + +R     + V +T          + +++   LLNL + A
Sbjct: 455 QTLLPKPTDVGQLIVDILELVQRTVGPGIHVDYTPNAALWPALVDASQLENALLNLCINA 514

Query: 127 HASLPRGGKVTIS 139
             ++P GG++ I 
Sbjct: 515 RDAMPDGGRLHIE 527


>gi|153003901|ref|YP_001378226.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027474|gb|ABS25242.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 557

 Score = 34.9 bits (79), Expect = 7.8,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 71/211 (33%), Gaps = 19/211 (9%)

Query: 24  HDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSA----IIRLKFMRLAF-GYT 74
           HD+ +P+GA+     LL    D        +  I  ++          L F    F G  
Sbjct: 329 HDLRNPLGAVRALASLLLRRGDVPASAHASLGEIDRAARRMLEMIGTLLDFTDGRFKGAL 388

Query: 75  GSVDSLIGLGDIEQ-VIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                   L ++ Q VI++  A D R    V +   G         A+++ NL   A   
Sbjct: 389 PIAPVPADLHEVCQDVIDELRAADPRRTIQVALEGDGRGTWDPARLAQVVSNLVANALEH 448

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDG-NVESTIDSH--DIQFY 184
             RG  V ++V+    +   +++  G +     P  F     G  +     +    +  Y
Sbjct: 449 GVRGAPVRVTVRGDHQQVAVTVENQGAIPPELRPVLFEPFCSGSRLRDASHARGLGLGLY 508

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V L+   +   +  E   +     +  L +
Sbjct: 509 IVDLVVRAHGGSVSFESTAERGTAFTVRLPR 539


>gi|209549360|ref|YP_002281277.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535116|gb|ACI55051.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 701

 Score = 34.9 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 13/146 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + I      A  R + +  +    GS    
Sbjct: 492 VSHEVGNMIGIITGSLGLLERETGFNDRQKRNIAR-IRKAAERGRSLAGSMLSIGSQQPF 550

Query: 81  IGLG-DIEQVIEDF-----IAVDKR--VQVSWTGEKIDLSRERAKI---LLNLFMVAHAS 129
                D+  ++        IAV  +  +++    +   +S + A +   +LNL + A A+
Sbjct: 551 YPSPVDVGSLLRGMADILEIAVGAKCHIKLELDADLPVVSLDAALLEQSVLNLCLNASAA 610

Query: 130 LPRGGKVTISVQDSKNENIFSLKING 155
           +P GG + I    +    + S+  +G
Sbjct: 611 MPLGGIIVIGATATTEILLISVTDSG 636


>gi|168698023|ref|ZP_02730300.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 969

 Score = 34.9 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 37  LELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDIE----QVIE 91
           L+ + +     E + ++R +   A +  + + LAF        + + L D+     +++ 
Sbjct: 625 LDEMPDGDPHRESVGMVRDAGKRAAVLTRQL-LAFSRKQVLQPTTLNLNDLLDGMSRMLA 683

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             I  D  + V    E   +  +  ++   ++NL + A  ++P GG++TI   +   +  
Sbjct: 684 QLIGADVDLTVRGAPEPWPVRADAGQVEQVVMNLAVNARDAMPTGGRLTIETGNVTLDTG 743

Query: 149 FS 150
           ++
Sbjct: 744 YT 745


>gi|90426018|ref|YP_534388.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90108032|gb|ABD90069.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 907

 Score = 34.9 bits (79), Expect = 7.9,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFM----- 67
           ALL S I HD+ +P+ A+  +   L ++     + +  +LI      +    +F+     
Sbjct: 677 ALLTS-ISHDLKTPLAAVLGAASTLRDLSPKLSDAQRAELIGSIVEESERLNRFIANLLD 735

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119
             RL  G      +L  LGD+          I     VQ+    E   L  +     + +
Sbjct: 736 MTRLEAGAVVPNAALHDLGDVVGSALRRAATILAHHNVQLDLEAELPMLQIDAVLFEQAI 795

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            NL   A    P G  +T+      +  +  +   G      + 
Sbjct: 796 FNLLDNAAKYAPLGTTITVRAARHGDAVLLQIIDEGEGIPPEDL 839


>gi|154245479|ref|YP_001416437.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159564|gb|ABS66780.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 469

 Score = 34.9 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 42  EVGIEDEVMQLIRLS----SMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDF--I 94
           +    +E +  ++ S    +  A   L   R   G     D  I L      V+E    +
Sbjct: 269 DAAEREEALSGVQESTRRLARLASQLLTLSRSEPGSRRPRDEEIDLSASARLVLEGLVDL 328

Query: 95  AVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
           A+++ + ++   +   L+R       + ++NL   A    P GG V +SV+   +  + +
Sbjct: 329 AIERGIDLALDADAPVLTRGDGAMTREAIVNLVENALRYTPAGGSVAVSVRAEDDWAVLA 388

Query: 151 LKINGNLARFPEK 163
           ++ +G      E+
Sbjct: 389 VEDSGPGIPPQER 401


>gi|94314246|ref|YP_587455.1| periplasmic sensor signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93358098|gb|ABF12186.1| Periplasmic sensor signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 480

 Score = 34.9 bits (79), Expect = 8.0,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK----FMRL--AFGYT 74
           H++ SP+ A+    E L+   + +     +  +R     +   L+      R   A    
Sbjct: 240 HELRSPMTALSLQAERLERTEMPEAARTRLATLRRGIERSRALLEQLLSLARAQSATAAP 299

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRERAKILLNLFMVAHASL- 130
              +S+       +V+ED + +     +           +  +  +++  L  +   ++ 
Sbjct: 300 APAESISVRHAFRRVLEDLMPLADSRHIDIGAVGDTDAQVPIQEVELITLLKNLVDNAIR 359

Query: 131 --PRGGKVTISVQDSKNENIFSLKINGN------LARFPEKFTQIVDGNVESTIDSHDIQ 182
             P+ G+V +SV+ S N     +  +G        +R  + F +I   +   +     I 
Sbjct: 360 YTPKHGRVDLSVETSPNAVAMIVTDSGPGISTEERSRIFDPFYRIPGNDAPGSGLGLSI- 418

Query: 183 FYYVILLAHENKIRLLPEIID 203
              V ++A      +  +  D
Sbjct: 419 ---VRVIAERVGATVEIDYAD 436


>gi|124266107|ref|YP_001020111.1| signal transduction histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124258882|gb|ABM93876.1| signal transduction histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 343

 Score = 34.9 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 78/225 (34%), Gaps = 18/225 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMS- 59
           +L +  L AL  + + +CH+I +P+ ++H+ +++L         +       I ++    
Sbjct: 117 DLQTARLAALGFMVAGVCHEITNPLTSLHSIVQILRSEKQPSPALLDKGFDNIAVNVKRI 176

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRER 115
              +   +KF R+             + +   V+  D +  D  +Q       + +    
Sbjct: 177 LDISRRLVKFSRVGDEPRYGFAVDEAIEEALYVLRQDDLLRDVELQYLRRDAGLKVFGNT 236

Query: 116 AKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +I    LNLF+ A  ++   G + I  +++       +   G      E   +I +   
Sbjct: 237 GQIREIFLNLFVNAAQAMAGRGTLRIETREAGPMVEVLVGDTGPGV-PAEAVGRIFEPFF 295

Query: 173 ESTIDSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    H       I   +AHE+   L               L +
Sbjct: 296 TTKSSMHGTGLGLAISTEIAHEHGGSLSLRHTGSEGATFCVALPR 340


>gi|94971993|ref|YP_594033.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94554044|gb|ABF43959.1| multi-sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 725

 Score = 34.9 bits (79), Expect = 8.1,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 27/234 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHN--SLE--LLDEVGIEDEVMQLIRLSS 57
            K +     + DL A   S + HD+ +P+  I +   L   L+ +       + +I  S+
Sbjct: 497 EKQLQLEQVNRDLEAF-ASSVSHDLRAPVRHIASFAGLLRPLIADEPRARRYLDIIEQSA 555

Query: 58  MSAIIRLK----FMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112
                 ++      RL  G      + + L ++  +V  +  +  +  ++ W    + + 
Sbjct: 556 GRMNTLIESMLTLSRL--GSGELQKTDVALAELVDEVQTELASEAEGRRIEWRVGDLPVV 613

Query: 113 RERA----KILLNLFMVAHA-SLPR-GGKVTISVQDSKNENIFSLKINGN------LARF 160
           R  A    +++ NL   A   S PR    + +  + +++E    ++ NG         R 
Sbjct: 614 RGDATLLRQVIHNLLGNAVKYSRPRETAVIEVWAEAAEHEQQIHVRDNGVGFDPECAGRL 673

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E F ++         + H +    V  +   +  R+            +  L 
Sbjct: 674 FEVFKRLHS---PEEFEGHGVGLASVQRIVTRHGGRVWAAGRPGEGATFTFTLP 724


>gi|241667026|ref|YP_002985110.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862483|gb|ACS60148.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 642

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 23/175 (13%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           I HD  + + A+  SLE+L +   +D  +  L+  +   A     L    LAF  +   +
Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLALTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-------------LLNLFMV 125
             +   D+  ++   + +  R     T  +        ++             +LNL + 
Sbjct: 347 LHMEPIDVSGLVRGMMDMLSRSLGPLTMIETSFP---VRLPTIVTDPNQLEMAILNLVVN 403

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKFTQIVDGNVESTIDS 178
           A  ++P GG++ +   +    +       G   R    ++   +    +E  I  
Sbjct: 404 ARDAMPSGGRIVLRASEESLPSGKGPLSPGRYVRIAVIDEGEGMDAKTLEQAITP 458


>gi|158522748|ref|YP_001530618.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511574|gb|ABW68541.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 749

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 25/165 (15%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--------DEVGIED------EVMQLIRLSSMSAIIR 63
           +  RI H++ +P+  I  S + L        D+   E+      + + +IR         
Sbjct: 538 VARRIAHEVKNPLTPISLSAQRLKRKFGPDADDPIFEECIRTILDYVDIIRNLVNEFAAF 597

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRERAK-I 118
            KF       +  +     +  I +  + +   D  V  +           L R++ K  
Sbjct: 598 AKF------PSAKLGPCDLVQTIRETADLYTEEDSPVTFTIDAPPDLPRLNLDRQQIKQA 651

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL   A  ++   G++TI+V+         L          E 
Sbjct: 652 LINLIENAITAMEGAGRITITVRHDPAAMKVVLTFADTGRGLSEA 696


>gi|9857983|gb|AAG00949.1|AF273679_3 FixL [Rhizobium etli CFN 42]
          Length = 641

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 10/130 (7%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--IRLKFMRLAFGY-TGSVD 78
           + HD  + +  I  +LE++++      +  ++R +  +A     L    LAFG       
Sbjct: 278 LAHDFNNLLTVISGNLEMIEDKLPPGSLRDILREAQAAAQDGAILTGQLLAFGRRQPLNP 337

Query: 79  SLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHASLP 131
               LG +     D +     + +++S   +  DLS      +    +LN+ + A  ++P
Sbjct: 338 KHADLGQLVTGFADLLRRTLGEDIKLSTIIDGSDLSVLVDSSQLQNAILNIALNARDAMP 397

Query: 132 RGGKVTISVQ 141
           +GG  T ++ 
Sbjct: 398 KGGSATTTIS 407


>gi|34498561|ref|NP_902776.1| two-component sensor histidine kinase [Chromobacterium violaceum
           ATCC 12472]
 gi|34104416|gb|AAQ60774.1| probable two-component sensor histidine kinase [Chromobacterium
           violaceum ATCC 12472]
          Length = 485

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 8/146 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           + HD+  PI  +   LE L+E      + + +          L ++R+  G   +V   +
Sbjct: 279 VSHDLRLPITRVRLRLEQLEEGSARQAIERDLSEMDQLIGDTLAYLRMGQGNENAVLLNV 338

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGK--VT 137
           G   +E VIED  A+   V       +   +R +A  + + NL      +   GG   V 
Sbjct: 339 GAL-LEGVIEDIEALGAEVAYQAEPVRPLYARPQALRRAIANLL---ENARRYGGDGVVE 394

Query: 138 ISVQDSKNENIFSLKINGNLARFPEK 163
           +++++       +++ +G      + 
Sbjct: 395 VALRERAGRIEITVRDHGPGIAEADL 420


>gi|271962010|ref|YP_003336206.1| osmosensitive K+ channel signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
 gi|270505185|gb|ACZ83463.1| osmosensitive K+ channel signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
          Length = 851

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 18/216 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA-------IIRLK 65
           ALL + + HD+ +P+ +   ++E L    IE   ++  +L+  +  S           L 
Sbjct: 623 ALLAA-VSHDLRTPLASARLAVESLRGTEIEWSAEDREELLATADESLVKLDRLVANLLD 681

Query: 66  FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
             RL  G  G     + L + I + I+D   +  RV+   + +  ++  +     +IL+N
Sbjct: 682 MSRLQAGVLGLALQPVALEEVIPRSIDDLGPLRDRVEGDVSVDLPEVVADPVLLERILVN 741

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD- 180
           +   A    P G K  ++     +     +   G            +        D+H  
Sbjct: 742 VMSNAVRYSPAGRKALVAGSRHGDYVEIRVVDRGPGIPAEAHDRVFMPFQRLGDRDNHTG 801

Query: 181 --IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       LA      L PE      + +   L 
Sbjct: 802 VGLGLALSRGLAEAMGGTLTPEETPGGGLTMILTLP 837


>gi|152985251|ref|YP_001346379.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150960409|gb|ABR82434.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 434

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 21/157 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQ-LIRLSSMSAIIRLKFMRL 69
           LL + I HD+ +PI  +   +E +D     D      E MQ L+R           + R 
Sbjct: 232 LLAA-ISHDLQTPITRMKLRVEFMDASSDRDKLWNDLEEMQHLVREGVA-------YARS 283

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAH 127
             G   +   +     ++ ++ D+    K+VQ+      +  +R  A  ++L+NL     
Sbjct: 284 MHGSAEASCRVDLDAFLDSLVFDYQDSGKQVQLDGRTAAVIDTRPHALRRVLVNLI---D 340

Query: 128 ASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
            +L   G   + V+  +       +  NG      E 
Sbjct: 341 NALKFAGAARLEVERRADGGTRIQVLDNGPGIPPGEL 377


>gi|86158662|ref|YP_465447.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775173|gb|ABC82010.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 461

 Score = 34.9 bits (79), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNL 157
           R+            R   + LLNL   A  + P GG+V +  ++ S +E    ++  G  
Sbjct: 331 RLYARGDASLEADPRRLKEALLNLVANAIEATPAGGEVVVEARELSGDEVELVVRDTGRG 390

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I      +  D   +       +  ++   L  E        +   L +
Sbjct: 391 M-PPETLRRIGTPFFTTRDDGTGLGVVLARAVIVQHGGTLRYESEPGSGTKVLVTLPR 447


>gi|189426202|ref|YP_001953379.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
 gi|189422461|gb|ACD96859.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
          Length = 366

 Score = 34.9 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 83/234 (35%), Gaps = 36/234 (15%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---------------EVGIEDEVMQL 52
           +L S+    L  S + H + +P+ ++   LE L+                V + +++  L
Sbjct: 136 SLDSLKGAFL--SLVSHKLKTPLTSLSLGLEELERYASRLHPTEACHLRLVSMREDLEAL 193

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE---K 108
                M++++R+     A G  G   +   L + ++   E    V  +  ++   E    
Sbjct: 194 --SCLMTSLVRMH---QALGGAGGEPARFDLTEVVKSAAESVQRVSSKRNMTLLLELETS 248

Query: 109 IDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKING------NLAR 159
             +   R +++  L  +   +      G  V I +  +      +++ +G       + +
Sbjct: 249 AAVLGNRDRLMFALQQILENAFKFSSDGATVAIRLTRAGGHAEIAIRDSGCGIAEEEMPK 308

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+F Q+ D +    I    +  + V  +  ++   +           ++  L
Sbjct: 309 IFERFYQV-DPDATGQIPGFGLGLFCVREIVRQHGGSIAVNSQLGQGTTVTINL 361


>gi|107028344|ref|YP_625439.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
 gi|105897508|gb|ABF80466.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia cenocepacia AU 1054]
          Length = 425

 Score = 34.9 bits (79), Expect = 8.3,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 22/223 (9%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
             ++  +   +L S I HD+ +PI  +    +LL + G  +  ++     S      L F
Sbjct: 206 LAVAERERAVMLAS-IAHDLRTPITRMQVRADLLTDRGDREGFLRDTESMSRVITQFLDF 264

Query: 67  MRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
            R      GS    +         D      D    D  V +        +        +
Sbjct: 265 AREI--PEGSPQISVDTHCRRDYTDALSPSGD-AHRDALVTLDLHAGPDFML-PAVDIDR 320

Query: 118 ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173
           +L NL      +L  G   V I+ +         ++ +G     P+        V  +  
Sbjct: 321 MLSNLV---ENALTYGEPPVEIATRARGEHYELVVRDHGPGVSEPDLDRVLRPFVRLDPA 377

Query: 174 STIDSHD-IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               SH  +    V  L   +   L      D  +V+     K
Sbjct: 378 RGGTSHSGLGLAIVHRLVRHHGGTLHMSNAADGGLVIVMRFPK 420


>gi|332185667|ref|ZP_08387414.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Sphingomonas sp. S17]
 gi|332014025|gb|EGI56083.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Sphingomonas sp. S17]
          Length = 440

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 20/149 (13%)

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRERAKILLNLFMVAH 127
               I L D+ +     +AV                  G   D  R   +IL+NL   A 
Sbjct: 291 ASMPIDLADVTRRAAGLLAVRAEAAGVAIRRPGPSEGMGATGDFGRS-LQILINLIGNAL 349

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDI 181
              PRGG+V ++V+      +  +   G      + AR  EKF ++      S    + +
Sbjct: 350 RYSPRGGEVVVTVEREDGWALTRVSDRGKGIEPEDQARIFEKFERV----DPSEPGGNGL 405

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             Y    LA      L  E I       +
Sbjct: 406 GLYIARRLARAMGGDLSVESIPGEGATFT 434


>gi|220916811|ref|YP_002492115.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954665|gb|ACL65049.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 462

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 2/118 (1%)

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNL 157
           R+            R   + LLNL   A  + P GG+V +  ++ S ++    ++  G  
Sbjct: 332 RLYARGDASLEADPRRLKEALLNLVANAIEATPAGGEVVVEARELSGDDIELVVRDTGRG 391

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I      +  D   +       +  ++   L  E        +   L +
Sbjct: 392 M-PPETLRRIGTPFFTTRDDGTGLGVVLARAVIVQHGGTLRYESEPGSGTKVLVTLPR 448


>gi|219849406|ref|YP_002463839.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219543665|gb|ACL25403.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 794

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 18/138 (13%)

Query: 41  DEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           D+V +++E ++++  +           L F R       S   L  L ++ +     + +
Sbjct: 461 DDVEMKNEALKVVLDTCKRGRSITGSLLTFAR----RRDSRRELSDLREVVEGTLTLMEI 516

Query: 97  DKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENI 148
           D R        Q+      I  + + +++ LNL   A  ++ P+GG +T++++      +
Sbjct: 517 DLRKHSVRVVRQIEMVPPTICDAGQISQVFLNLLTNARDAMKPKGGTLTVTLKAEGEWIM 576

Query: 149 FSLKINGNLARFPEKFTQ 166
             +   G     PE   +
Sbjct: 577 LQVADTGCG--IPEAIRR 592


>gi|295676500|ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295436343|gb|ADG15513.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 657

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 83/210 (39%), Gaps = 25/210 (11%)

Query: 22  ICHDI---ISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRL-----KFMRLAFG 72
           + H++   ++P+ A  + LE++ E+  +    +++IR +      RL        R+A G
Sbjct: 298 LSHELRTPLTPVLAGASVLEMIPELPEQARASVRMIRRNVE-LEARLIDDLLDLTRVANG 356

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKI---LLNLFM 124
                   + + ++   + +    + +V+     V        +  +RA++   L NL  
Sbjct: 357 KLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVDKRATHHYVLADRARLQQMLWNLIR 416

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A    P GG + +  +D + +   S++  G     PE+  ++ +   E    S   QF 
Sbjct: 417 NAAKFTPDGGHIYVRTRDERMQVQISVEDTGIGI-EPEQIGKLFN-AFEQGDQSMTRQFG 474

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + L      + +   + D H   ++A   
Sbjct: 475 GLGL-----GLAITKALTDVHGGTVTAQSP 499


>gi|187920085|ref|YP_001889116.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia phytofirmans PsJN]
 gi|187718523|gb|ACD19746.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia phytofirmans PsJN]
          Length = 375

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 28/222 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67
            +L + + HD+ +P+GA+  S E L      DE    +     ++ +R        L   
Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYL-MRTAADEQSATVAARVKNSSLRMARMVDQLLNLA 206

Query: 68  RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125
           RL  G        I L  +   VI++F + +   Q+ +             ++      +
Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKQIVFASRGNTSGAWDTDLVWQAVSNL 266

Query: 126 AHASLPR---GGKVTISVQDSKNEN---IFSLKINGNLARFPEKFTQI----VDGNVES- 174
              +L     GG + + V     E+     + +       FP  F         G     
Sbjct: 267 VSNALHHGAPGGDIGVEVDGEAVESVRLKVANRGTIPAEVFPHLFKAFGPNNSGGRSREG 326

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  H +Q      +A  +   +     +    V +  L +
Sbjct: 327 LGLGLHIVQ-----EIARMHGGNVSVNSDEAVGTVFTIELPR 363


>gi|108757728|ref|YP_632419.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108461608|gb|ABF86793.1| sensor histidine kinase / response regulator [Myxococcus xanthus DK
           1622]
          Length = 368

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 28/170 (16%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIED----EVMQLIRLSSMSA- 60
            L A+  + + + H+I +P+ A    L +L+         +     E + L+R       
Sbjct: 145 KLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRLRRLPDGQQAPLLEPLLLVRDEIRRLD 204

Query: 61  ---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKIDLSRE 114
                 L+F R          + + + ++ + + D +   A  ++V +  T  +  +   
Sbjct: 205 HILEDFLQFAR----PREFRPASVDVNEMLRRVVDLLSGQAASRKVSLEVTPREAPVPSV 260

Query: 115 RA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                   ++L+NL + A  + P GG VT+S          ++  +G   
Sbjct: 261 AGEEERLRQVLINLCLNALEATPAGGTVTLSAGHEGGRVWLTVDDSGPGV 310


>gi|77464844|ref|YP_354348.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389262|gb|ABA80447.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 887

 Score = 34.9 bits (79), Expect = 8.4,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%)

Query: 4   NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54
            +  +L    L A        LL S + HD+ +P+  I  +   L E G    E  Q + 
Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +      R        L   RL  G          L ++       +A   R     T 
Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764

Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              DL           ++L+N+   A    P G  +T++ +      + S+   G     
Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824

Query: 161 PEK 163
            ++
Sbjct: 825 ADR 827


>gi|332559742|ref|ZP_08414064.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodobacter sphaeroides WS8N]
 gi|332277454|gb|EGJ22769.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodobacter sphaeroides WS8N]
          Length = 887

 Score = 34.9 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%)

Query: 4   NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54
            +  +L    L A        LL S + HD+ +P+  I  +   L E G    E  Q + 
Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +      R        L   RL  G          L ++       +A   R     T 
Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764

Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              DL           ++L+N+   A    P G  +T++ +      + S+   G     
Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824

Query: 161 PEK 163
            ++
Sbjct: 825 ADR 827


>gi|170743274|ref|YP_001771929.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197548|gb|ACA19495.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 688

 Score = 34.9 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYT 74
           HD  + + A+  SLELL+      +D   +L+  +   A          L F R      
Sbjct: 334 HDFNNLLMAVLGSLELLEKRLDPQDDLARRLLGNAVQGAQRGAALTQRLLAFAR----RQ 389

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKI-LLNLFMVAH 127
                 + + D+ + +   +       V+           + +   + ++ LLNL + A 
Sbjct: 390 ELRPETVAVADLVEGMRGLLERALGPSVALETRLPADLPPVRIDANQFELALLNLAVNAR 449

Query: 128 ASLPRGGKVTISVQDSKNENIF 149
            ++P GG +T+           
Sbjct: 450 DAMPTGGTITLEGGSVAAAPGL 471


>gi|77465250|ref|YP_354753.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77389668|gb|ABA80852.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 464

 Score = 34.9 bits (79), Expect = 8.5,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 83/229 (36%), Gaps = 21/229 (9%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL 55
           +A  +   L  ++L       + S + HD+ +PI  +  SLE L+    + ++    I  
Sbjct: 228 IAGAVNATLDQLELTVESLRQVSSDVAHDLRTPITRLRTSLEPLMLREDLPEDAAADIAS 287

Query: 56  SSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWT 105
           +   A   ++      R+A    G         D+ ++ +D       +A +   ++   
Sbjct: 288 AVGQADRIVRIFNAVLRIAQIEGGGARPRFARLDLGRLADDLHELLEPVAEEMGHRIDAR 347

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + +  +R   A+ + NL   A    P    V ++V+    E + +++ +G      E
Sbjct: 348 IEPVAVEGDRDLLAQAISNLVENAFRHCPPPAHVALTVRREGAEAVVTVEDDGPGIPAAE 407

Query: 163 K---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +   F +          +   +    V  +A  +  R+     +    V
Sbjct: 408 REAVFRRFYRLERSRNSEGSGLGLSLVAAVARLHGGRVELHDAEPGLRV 456


>gi|320353194|ref|YP_004194533.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121696|gb|ADW17242.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 654

 Score = 34.9 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 12/161 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +D ++++ S I HD  + +  I+ +LE+   V  ++ V QL+  S+ +  +  + +R   
Sbjct: 286 LDAMSMMASGIAHDFNNLLTIINGNLEMARYVSRDENVSQLLGESAKALNLTAQLIRQFT 345

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDL---SRERAKILLNLF 123
            ++ +         + ++IE+ +A D      R Q+    E++ L        ++ +NL 
Sbjct: 346 TFSDNYLPQKSQVQLRRLIEEVLARDLAPVGIRYQIRADEEELALTLDPDLVRQVFVNLA 405

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKIN----GNLARF 160
             A  ++   G+V + ++     +  +        G LAR 
Sbjct: 406 KNAVDAMGTSGRVEVCIERVDGSDEAARTGQPVPSGELARI 446


>gi|116255237|ref|YP_771070.1| putative two component fused sensor/regulator transcriptional
           regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259885|emb|CAK02979.1| putative two component fused sensor/regulator transcriptional
           regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 642

 Score = 34.9 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 47/228 (20%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAI--IRLKFMRLAFGYTGSVD 78
           I HD  + + A+  SLE+L +   +D  +  L+  +   A     L    LAF  +   +
Sbjct: 289 IAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAF--SRRQE 346

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-------------LLNLFMV 125
             +   D+  ++   + +  R     T  +        ++             +LNL + 
Sbjct: 347 LHVEPIDVSGLVRGMMDMLSRSLGPLTAIETSFP---VRLPTILTDPNQLEMAILNLVVN 403

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----HDI 181
           A  ++P GG++ +   +           +G +   P ++ +I   +    +D+      I
Sbjct: 404 ARDAMPSGGRIVLRASEESLP-------SGKIPLPPGRYVRIAVIDEGEGMDAKTLEQAI 456

Query: 182 QFYYVIL---------------LAHENKIRLLPEIIDDHNVVLSALLE 214
             ++                  LA ++  RL+ +        +     
Sbjct: 457 TPFFTTKGVGKGTGLGLSMVQGLASQSGGRLMMKSSLGEGTTVELWFP 504


>gi|114799948|ref|YP_760029.1| sensor histidine kinase [Hyphomonas neptunium ATCC 15444]
 gi|114740122|gb|ABI78247.1| sensor histidine kinase [Hyphomonas neptunium ATCC 15444]
          Length = 517

 Score = 34.9 bits (79), Expect = 8.6,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 64/179 (35%), Gaps = 22/179 (12%)

Query: 22  ICHDIISPIGAIHNSLEL-----LDEVGIED---EVMQLIRLSSMSAIIRLKFMRLAFGY 73
           I HD+ SP+  + N LEL     L E    +     +  +     +    L+  RL  G 
Sbjct: 301 IAHDLRSPLTRLRNRLELALSKPLSEEAANETLGTTLSEVDRVLDTFNAILRLARLDAGS 360

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------KILLNLFM 124
            G++  +   G  E++ E F    +   +++  +   ++R            + L NL  
Sbjct: 361 EGTLARMDLSGLAEELAELFDPACEEASLTFKSQ---IARNLVILGDKDLIGQALANLLD 417

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
            A    P GG ++ +   +       L +  +    PE+    V       +DS   Q 
Sbjct: 418 NAVKYTPAGGAISFTASRTPEGM-IDLTVIDSGPGIPEEARDKVIERF-HRLDSARTQP 474


>gi|187928036|ref|YP_001898523.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
 gi|187724926|gb|ACD26091.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
          Length = 777

 Score = 34.9 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 72/212 (33%), Gaps = 19/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLSSMS---AIIRLKFMR-----L 69
           I HD+ SP  AI   +EL  +     +   L+    +LSS +   A   +   R     L
Sbjct: 560 ISHDMRSPQSAILALIELQRDASRALDREVLLFRIEQLSSRTLELADAFIDLARAESQTL 619

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V  ++   D    + +   V+ RV            R   + L+NL   A   
Sbjct: 620 KLVDVDLVGLVLDAADEVWPLANRHQVEVRVVADIEAAVRGEPRLLVRALVNLLNNAIKF 679

Query: 130 LPRGGKVTISVQDSKNENIFSLKING------NLARFPEKFTQIVDGNVESTIDSHDIQF 183
              G  VT+SV+  +     ++   G      +  R  + F ++ +G   +      +  
Sbjct: 680 SAAGSMVTVSVEQDEAMFSVAVADQGAGIALADQPRLFQPFHRLHEGA-ANAPSGSGLGL 738

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +V  +   +  R+  +         +  L +
Sbjct: 739 VFVKTVVDRHGGRIAVQSAPGLGSTFTLWLPR 770


>gi|126463686|ref|YP_001044800.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126105350|gb|ABN78028.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 887

 Score = 34.9 bits (79), Expect = 8.7,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%)

Query: 4   NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIR 54
            +  +L    L A        LL S + HD+ +P+  I  +   L E G    E  Q + 
Sbjct: 646 RLAEDLEGARLAAETDRLRTALLSS-VSHDLRTPLVTIIGAAGSLAEPGALPPEAQQALA 704

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +      R        L   RL  G          L ++       +A   R     T 
Sbjct: 705 ETIREEGERLDRYVQNLLDMTRLGHGALKPAVQPSDLAELVGAARTRLAAVLRGHRLGTD 764

Query: 107 EKIDLSRERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              DL           ++L+N+   A    P G  +T++ +      + S+   G     
Sbjct: 765 LPPDLPAVLVDPVLTEQVLVNILDNAAKYAPPGSPITLAARLDAGRVVLSVADEGPGIPP 824

Query: 161 PEK 163
            ++
Sbjct: 825 ADR 827


>gi|239906645|ref|YP_002953386.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796511|dbj|BAH75500.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1136

 Score = 34.9 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 23/158 (14%)

Query: 22  ICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAF 71
           I HD  + + +I NS E  L+D    +     L R   + A  R        L F R + 
Sbjct: 771 IAHDFNNILTSIINSTELALMDMAPDDPMEDDLRR--VLKAGERGSRLVKQILSFTRPS- 827

Query: 72  GYTGSVDSLIG--LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVA 126
              G     +   + +   +I   +  + ++ V      +    +  ++   ++NL   A
Sbjct: 828 -QAGFAPINVADVVNEAAGLIRASLPRNIKIVVETPDAPVACRADPTQLHQIVMNLCTNA 886

Query: 127 HASL-PRGGKVTISVQD---SKNENIFSLKINGNLARF 160
             ++ P GG + + + +    +++        G  AR 
Sbjct: 887 FQAMRPTGGVLALRLTEDSLDEDQAGQVGTRAGRCARI 924


>gi|94985015|ref|YP_604379.1| histidine kinase [Deinococcus geothermalis DSM 11300]
 gi|94555296|gb|ABF45210.1| histidine kinase [Deinococcus geothermalis DSM 11300]
          Length = 388

 Score = 34.9 bits (79), Expect = 8.8,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 31/217 (14%)

Query: 24  HDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           HD+ +PI A+   LE+++E   + D++  LI+++       L          ++  G   
Sbjct: 162 HDLKNPIAAVMGLLEVVEEDHRVPDDLRDLIKVAHDETQHLLHLAVNMLDVRKIQAGKMR 221

Query: 76  SVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------KILLNLFMVA 126
               L+      ++ +     +    R +        +LS  RA      ++L NL   A
Sbjct: 222 LRPELVFSPMFEEVIEQARGDVGSGLRDRHVRVEVAPNLSPSRADPEILRRVLANLISNA 281

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI------VDGNVESTID 177
                 GG + + V   + E    ++ +G        P  F         + G  ++ + 
Sbjct: 282 MKHTVTGGLIQVRVWQGEGETYVQVRDDGEGIPAEDLPHLFAAFEQSRLTLHGRFDTGMG 341

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  L   E+  R+  E         +  L 
Sbjct: 342 -----LAFCKLAVEEHGGRIWAESERGKGATFTFTLP 373


>gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 466

 Score = 34.5 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 19/173 (10%)

Query: 24  HDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL-----KFMRLAFGYTGSV 77
           H++ +P+ AI  +L+LL    G+  E        + S   RL       + LA    G V
Sbjct: 256 HELRAPLTAILGNLDLLRRRPGLPPEEQARALEEARSEAERLSRLVADLLSLARADAG-V 314

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKILLNLFMVAHASL-- 130
             +I   D++ V+ +     +R+      V    E + +  +R +I   L ++   ++  
Sbjct: 315 PLVIKPFDVDAVVLEAFQEARRLARGQELVLDPLEPVHVPGDRDRIKQLLLILLDNAIKY 374

Query: 131 -PRGGKVTISVQDSKNENIFSLKIN----GNLARFPEKFTQIVDGNVESTIDS 178
            P GG++T+ ++ + +        +       A  P  F +    +   + D 
Sbjct: 375 TPAGGRITLGLRGAGDGGAILTVADTGVGIPPADLPHVFERFYRADPARSRDP 427


>gi|116626468|ref|YP_828624.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229630|gb|ABJ88339.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 611

 Score = 34.5 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 18/181 (9%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-DEVMQLI 53
            + I   L + D L A+  + S + H++ +P+ AI   +E+    L     +    M++I
Sbjct: 381 QRKINRELQTADRLSAISRISSGVAHEVKNPLNAILLHVEVARGKLSHGNTDVAPQMEII 440

Query: 54  RLSS----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK 108
                         L F R       +V     + +I ++     A     V V    E 
Sbjct: 441 AREILRLDRVVRTFLDFTRPVELKLATVSMRELVQEIVELARPQAAAAGIGVTVRDEAEG 500

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +D+  +R    + +LN+ +    ++P GG++       +N     +   G     PE   
Sbjct: 501 VDVRVDRDLFKQAVLNIVVNGMQAMPEGGELRFEATAGENGTELRISDTGTG--IPEALR 558

Query: 166 Q 166
           +
Sbjct: 559 E 559


>gi|328949556|ref|YP_004366891.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449880|gb|AEB10781.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 373

 Score = 34.5 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 76/214 (35%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL-AFGYT 74
           L + I H++ +P+  + + LE L +     + E ++ +          +  +RL +    
Sbjct: 149 LVADIAHELRTPLTVLKSELEALADGLLSPDPETLERLVEEVDLLARLVGDLRLLSLAEA 208

Query: 75  GSVD---SLIGLGD-IEQVIEDFI--AVDKRVQVSWTGEKIDLSRERAKI---LLNLFMV 125
           G ++     + L D + +V E F   A  K V++  T   + +  +  ++   LLNL   
Sbjct: 209 GGLELAREDVPLRDLVRRVAEGFAPRAAAKGVRLVVTAAPVTVHADPGRLRQVLLNLLDN 268

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNV--ESTIDSHD 180
           A    P GG + + V  ++   +  +   G        P  F +    +           
Sbjct: 269 ALRHTPAGGCIAVGVH-AEGAAVLEVADTGPGIPEAHRPHVFERFYRPDPARSRAFGGSG 327

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    V  L   +  R+      +   V    L 
Sbjct: 328 IGLAIVKALVEAHGGRVEAMNRPEGGAVFRVRLP 361


>gi|207723119|ref|YP_002253519.1| putative two component transmembrane sensor kinase (partial
           sequence towards c terminus) protein [Ralstonia
           solanacearum IPO1609]
 gi|206588312|emb|CAQ19005.1| putative two component transmembrane sensor kinase (partial
           sequence towards c terminus) protein [Ralstonia
           solanacearum IPO1609]
          Length = 625

 Score = 34.5 bits (78), Expect = 8.9,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           I HD+ +P+  +    E+L +          I     S    ++   LA+  +G  ++  
Sbjct: 422 IAHDLKTPLSRLRLRAEMLADPKAGAG----IERDVASMSAIVEQF-LAYAQSGDGEARD 476

Query: 82  GLGD--IEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVT 137
              D  +  +++ F    + V +          +     +I++NL      +   G +  
Sbjct: 477 VTVDRHLRGLVQPFTEQGRHVALDLRAGDRFRLKPTHLERIVVNLL---DNAFAYGAE-P 532

Query: 138 ISVQDSKNENIFSLKINGNLARFP 161
           + +  + +E  F+L +  + A  P
Sbjct: 533 VRLATAADERGFTLTVEDHGAGIP 556


>gi|303248425|ref|ZP_07334685.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302490223|gb|EFL50141.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 314

 Score = 34.5 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 29/232 (12%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAI 61
           L S  L ++  L S I H+I +P+  I   L+L  E       + +  +   R S     
Sbjct: 85  LQSQKLASIGELSSGIAHEINNPLAIITQELDLARELLAGGPCLAETDLDDARDSLREIA 144

Query: 62  IRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKI 109
            ++   R      L F     +D ++    +++VIED        A  + V +       
Sbjct: 145 SQVDRCRQITHKLLNF--ARKMDPVLQEEALDRVIEDMAILVEREARGRDVAIVRDYASD 202

Query: 110 DLS-RERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               R       +++LNL   A  + P+GG +T+S +      + +++  G+    P   
Sbjct: 203 LPPVRTDVPLLRQVILNLLTNALHATPKGGAITLSTRRKGKWAVIAVRDTGSGIS-PANM 261

Query: 165 TQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +            +   +       L            +  L 
Sbjct: 262 EKIFDPFFTTKQPGQGTGLGLSLSHGIVARLGGTLAAVSPPGEGATFTVTLP 313


>gi|219849579|ref|YP_002464012.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543838|gb|ACL25576.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 469

 Score = 34.5 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 80/218 (36%), Gaps = 23/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS--MSAIIRLKFMRLAFG 72
           L + I H++ +P+  I   LE + +      ++++  L+   +     I  L    LA  
Sbjct: 230 LTADIAHELRTPLSIIKGRLEGIQDGVYEADDEQIEALLAEVALLERLINDLHL--LALA 287

Query: 73  YTGS----VDSLIGLGDIEQVIEDFI--AVDKRVQVSWTGEKIDL-----SRERAKILLN 121
             G      +++  +  + + I  F   A +++V ++ T            +  A++L N
Sbjct: 288 DAGQLPLYRETVSPVMLVNEAIRSFTQSATERKVALTTTIPSDLPDVDVDPQRIAQVLGN 347

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKFTQIV--DGNVESTI 176
           L   A    P GG++ ++V    +   F ++  G   + A  P  F +    D +   + 
Sbjct: 348 LISNALRHTPPGGEINLAVTADADNVTFHVRDTGSGIDSADLPHIFDRFYRSDRSRTRSS 407

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L   +  ++       H   +S  + 
Sbjct: 408 GGAGLGLAIARRLVEAHGGQIWATSQLGHGTTVSFRVP 445


>gi|91778879|ref|YP_554087.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia xenovorans LB400]
 gi|91691539|gb|ABE34737.1| response regulator receiver sensor signal transduction histidine
           kinase [Burkholderia xenovorans LB400]
          Length = 375

 Score = 34.5 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 76/218 (34%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFM 67
            +L + + HD+ +P+GA+  S E L     +++ +  +     ++ +R        L   
Sbjct: 148 EMLMAVLSHDLRTPLGAVLASAEYLMRTAADEQSVT-VAARVKNSSLRMARMVDQLLNLA 206

Query: 68  RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-MV 125
           RL  G        I L  +   VI++F + +   Q+ +             ++      +
Sbjct: 207 RLQGGRLPLQPRSIELATLCRSVIDEFASRENGKQIVFASRGNTTGAWDTDLVWQAVSNL 266

Query: 126 AHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD-- 180
              +L     GG + + V D +  +   LK+       PE F  +      +   +    
Sbjct: 267 VSNALHHGAPGGDIGVEV-DGEAVDSVRLKVANRGTIPPEVFPHLFKAFGPNNSGARSRE 325

Query: 181 ---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  + V  +A  +   +     +    V +  L +
Sbjct: 326 GLGLGLHIVQEIARMHGGSVGVHSEEATGTVFTIELPR 363


>gi|163847015|ref|YP_001635059.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524838|ref|YP_002569309.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163668304|gb|ABY34670.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448717|gb|ACM52983.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 796

 Score = 34.5 bits (78), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 41  DEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           D+V +++E ++++  +           L F R       S   L  L ++       + +
Sbjct: 461 DDVEMKNEALKVVLDTCKRGRSITGSLLTFAR----RRDSRRELSDLREVVDGTLTLMEI 516

Query: 97  DKR-------VQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENI 148
           + R        Q+      I  S + +++ LNL   A  ++ P+GG +T+S+        
Sbjct: 517 ELRKHNIRVVRQIDMVPPTICDSGQISQVFLNLLTNARDAMKPQGGTLTVSLTSDNEWIT 576

Query: 149 FSLKING 155
             +   G
Sbjct: 577 LQVTDTG 583


>gi|325001103|ref|ZP_08122215.1| two-component system sensor kinase [Pseudonocardia sp. P1]
          Length = 851

 Score = 34.5 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 15/213 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRLKFM-- 67
           ALL + + HD+ +P+ +I  ++  L + G         E++  +  S+      +  +  
Sbjct: 632 ALLSA-VGHDLRTPLTSIKAAVGSLRDPGLRLPDDDRAELLATVEESADRLSNLVDNLLD 690

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             RLA G    + + +G  ++       +     V V+   +  D+  +   +   +  V
Sbjct: 691 SSRLAAGAVTPLLAPVGYDEVVATALIGLDGAGDVTVAVAEDVPDVVADSGLLERVIANV 750

Query: 126 AHASLPRGGK-VTISVQDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDSHDI 181
              +L  GG+ VT+      +     +   G      R  + F                +
Sbjct: 751 IDNALRHGGRGVTVRASAHSDRVELRVVDRGPGVPRRRMGDLFAAFQRLGDRDATSGLGL 810

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  L       L  E      + +   L 
Sbjct: 811 GLSVAQGLTTAMGGTLTVEDTPGGGLTVVVSLP 843


>gi|254562007|ref|YP_003069102.1| sensor hybrid histidine kinase with two PAS and two response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254269285|emb|CAX25251.1| putative sensor hybrid histidine kinase with two PAS and two
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 622

 Score = 34.5 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 38/224 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + AI  SLEL+     +   ++ +  ++  A  R        L F R     
Sbjct: 269 IAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNATGAAQRGSALTKRLLSFSR----- 323

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK------ILLNL 122
             S D+     D   +IE   A+        V V    E  D+             +LNL
Sbjct: 324 --SNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEP-DMPFALVDPDQLELAVLNL 380

Query: 123 FMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGNLARFPEKFTQIVDGNVE 173
            + A  ++P GG VTIS + ++                  +      PE   ++ +    
Sbjct: 381 CINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTGIPPEILERVCEPFFT 440

Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215
           +            ++  LA +   RL           +   L +
Sbjct: 441 TKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|171060406|ref|YP_001792755.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777851|gb|ACB35990.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 675

 Score = 34.5 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 21/218 (9%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSA 60
           L S  L A   L + I H++ +PI  I  +L++L               ++LI       
Sbjct: 443 LRSEKLAAVGQLTASIAHEVNNPIAVIQGNLDVLRSQLPAATAATVHTELRLIDEQIERM 502

Query: 61  ----IIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGE---KID 110
                  L+F + A        + +    +     V+   +    R+ V        +  
Sbjct: 503 RLIVTQLLQFAKPA--EYAGYIAPVDTARVLDDCLVLVGHLLARTRITVQRDFTATRQPG 560

Query: 111 LSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           ++R   + +L+NL + A  ++P GG + ++ +D + +++     +       E   Q+  
Sbjct: 561 INRNELQQVLVNLLVNAIHAMPEGGALGLATRDVEPDSVAISVTDSGAGLDVELMDQLFQ 620

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             V    D   +  +    L       L      D  +
Sbjct: 621 PFVTRKKDGTGLGLWISRSLVERYGGDLRAANRSDGVI 658


>gi|156743808|ref|YP_001433937.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156235136|gb|ABU59919.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 882

 Score = 34.5 bits (78), Expect = 9.1,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 15/160 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAF 71
           LL   + HD  + + AI  +L+L L  +       Q IR +      +A +  + +  A 
Sbjct: 495 LLAGGVAHDFNNLLMAIMGNLDLALLALPKTSTAFQHIRNAMLATRHAAGLTQQLLAYA- 553

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFM 124
           G  G   + + L  I   + D + V   ++ ++    +           +  +++LNL +
Sbjct: 554 GRGGDRRTDVDLTRIVAGMADMLRVSVGRQTRLELHLDPYLPVFQADPSQIQQVVLNLIL 613

Query: 125 VAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            A  +LP  GG +++     +  +   L  N    R    
Sbjct: 614 NAADALPAHGGIISVR-TGMRFCDEALLAANRTNERLSPG 652


>gi|331012711|gb|EGH92767.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 797

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 25/86 (29%)

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLNL + A  ++P GG++TI   +          I G++AR           ++     
Sbjct: 542 ALLNLCINARDAMPDGGRITIEADNQ--------WIEGDVARMH---------DMPEG-- 582

Query: 178 SHDIQFYYVILLAHENKIRLLPEIID 203
                 +Y+ L   +    + P++I 
Sbjct: 583 ------HYLSLCVTDTGTGMTPDVIA 602


>gi|302037106|ref|YP_003797428.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605170|emb|CBK41503.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 657

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 23/201 (11%)

Query: 10  SSMDLVALLCSRICHDIISP-IGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
             + LV  L   I H++ +P IG    +  L D+  +  E     RL +  A    + + 
Sbjct: 433 EQVKLVGQLAGGILHEVRNPLIGLGSLATHLADQASLPQEARDRCRLIAREAARIDELLE 492

Query: 69  LAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTGEKIDLSRERAKIL- 119
              G        I + ++  V++D         I    RV+ S   +   +   RA IL 
Sbjct: 493 SHLGQLRPRPFDIAVCELPAVLDDTLTLLRPNLIKNHIRVKSSMAPDLPAVDASRAHILQ 552

Query: 120 --LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
             LN+ M A  ++P GG + +++           ++ G L RF +    I   ++     
Sbjct: 553 VCLNIAMNAIDAMPAGGSLNVTLSPD------VRRVPGVLMRFADSGKGIAGEDLT---- 602

Query: 178 SHDIQFYYVILLAHENKIRLL 198
            H  + ++    A    + L 
Sbjct: 603 -HIYEPFFTNGKAKGVGLGLT 622


>gi|294010587|ref|YP_003544047.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292673917|dbj|BAI95435.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 687

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 29/184 (15%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----------RLKFMRLAFG 72
           HD  + +  +  +LELL     ED+    +R ++ +A+             L F R    
Sbjct: 317 HDFNNLLQIVTGNLELLQRGLNEDQAR--LRRAADNAMAGAERAALLTQRLLAFAR---- 370

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKIDLSRERAKILLNLF 123
                   I    +   + D +       +          W  E ID+++     LLNL 
Sbjct: 371 RQPLAPERIDPNRLVSGMSDMLNRTLGETIEVETIQSARIWPIE-IDVNQME-NALLNLA 428

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VESTIDSHDIQ 182
           + A  ++P GGK+TI V ++  +  ++ +            +    G  ++  + SH I+
Sbjct: 429 VNARDAMPDGGKLTIEVANTHIDEDYAAQEAEVSPGQYVLISVSDTGEGMDEEVLSHAIE 488

Query: 183 FYYV 186
            ++ 
Sbjct: 489 PFFT 492


>gi|260459119|ref|ZP_05807374.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259034673|gb|EEW35929.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 858

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 21/141 (14%)

Query: 22  ICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           I HD  + + AI  + +LL       +    D  +  I+ ++  A   ++ + LAF    
Sbjct: 486 IAHDFNNVLTAIIMASDLLLTNHRPSDPSFPD--IMNIKQNANRAASLVRQL-LAFSRKQ 542

Query: 76  SVDSLI-----GLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125
           ++   +      L D+  ++   +  D ++++      W  +      E+   ++NL + 
Sbjct: 543 TLRPEVLNLTDVLADLRMLLARLVGNDIKLKIDHGRDLWPVKVDIGQFEQV--VVNLAVN 600

Query: 126 AHASLPRGGKVTISVQDSKNE 146
           A  ++P GG +T+  ++   E
Sbjct: 601 ARDAMPAGGDLTVRTRNVTTE 621


>gi|163851076|ref|YP_001639119.1| histidine kinase [Methylobacterium extorquens PA1]
 gi|218529906|ref|YP_002420722.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240138210|ref|YP_002962682.1| putative sensor hybrid histidine kinase with PAS/PAC and response
           receiver regulator receiver domains [Methylobacterium
           extorquens AM1]
 gi|254560770|ref|YP_003067865.1| sensor hybrid histidine kinase with PAS/PAC and response receiver
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|163662681|gb|ABY30048.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|218522209|gb|ACK82794.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|240008179|gb|ACS39405.1| putative sensor hybrid histidine kinase with PAS/PAC and response
           receiver regulator receiver domains [Methylobacterium
           extorquens AM1]
 gi|254268048|emb|CAX23919.1| putative sensor hybrid histidine kinase with PAS/PAC and response
           receiver regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 541

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 30/171 (17%)

Query: 37  LELLDEVGIEDEVMQLIRLSSMSAI---IRLKFMRLAF--------------GYTGSVDS 79
           L LLD   ++   M+    +  +A     +L    LAF              G   S+  
Sbjct: 190 LALLDHPTLDVSRMRRAGEAVRAATDRAAKLTHQLLAFSRKQRLEGRLLNLNGLVESMGE 249

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
           + G      + +D +         WT  +ID ++     LLN+ + A  ++P GG VT+ 
Sbjct: 250 MAG----RTIGDDVVLKSVLAPDLWT-TRIDPTQAEV-ALLNVLINARDAMPEGGSVTVR 303

Query: 140 VQ----DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
            +    + ++  ++     G         T    G     I +  ++ ++ 
Sbjct: 304 TENLLIEDEDTALYKTVPPGAYVVI--SVTDTGTGMPSE-ILARVMEPFFT 351


>gi|86740853|ref|YP_481253.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3]
 gi|86567715|gb|ABD11524.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3]
          Length = 670

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 30/189 (15%)

Query: 24  HDIISPIGAIHNSLE-LLDEVGIEDEV---MQLIRLSSMSAIIR----LKFMRLAFGYTG 75
           HD  + +G I    E +LD +  +D     M  I  ++  A       L F R       
Sbjct: 295 HDFNNLLGVITGYAEIVLDTLPDDDPCRADMDEISRAADQAAGLTRQLLTFSR----QES 350

Query: 76  SVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLS-----RERAKILLNLFMVAHA 128
           S    + L  + +   + +     + +++    +           +  ++++NL + + A
Sbjct: 351 SKPETLDLNAVVEGTRNLLRRTIGEDIEIVTLLDPDLHPVTIDPSKIQQVVMNLVVNSRA 410

Query: 129 SLPRGGKVTISV----QDSKNENIFSLKING---NLARFPEKFTQIVDGNVESTIDS--- 178
           ++P GG++T+S     +D           +G      R    +  +   +    +     
Sbjct: 411 AMPDGGRLTLSTANLDRDRGPSPADRPAAHGRPSPEERPKRGWACLAVADTGCGMSPEVI 470

Query: 179 -HDIQFYYV 186
              ++ ++ 
Sbjct: 471 RRAVEPFFT 479


>gi|325293895|ref|YP_004279759.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061748|gb|ADY65439.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 704

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 14/161 (8%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ + IG I  SL LL+ E G  D   + I      A  R + +  +    GS   +
Sbjct: 491 VSHEVGNMIGIITGSLGLLERETGFNDRQKRHIAR-IRKAADRGRSLASSMLTIGSQQPI 549

Query: 81  IGLG-DIEQVIEDF-----IAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHAS 129
                ++  ++        IAV  + +++   ++             + +LNL + A A+
Sbjct: 550 HPSCINVANLLRGMADILEIAVGPKCRIALEIDEDLPSVALDPALLEQSILNLCLNAAAA 609

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +P GG ++IS    K+  + ++   G     PE   +  + 
Sbjct: 610 MPDGGLISISAASEKDTLLIAVTDEGVGM-TPEAVDKAFEP 649


>gi|168701012|ref|ZP_02733289.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 659

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRL 64
           S  L AL  L   I HD  + +  I    EL     D     +   QL+R+++ +  +  
Sbjct: 286 SQRLEALGTLAGGIAHDFNNLLAGIFGFAELAQSADDLGAAREHCGQLVRVATRARELIA 345

Query: 65  KFMRLAFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--- 118
           + +  A       +       + ++  ++    +    ++V        +S +  ++   
Sbjct: 346 QVLAFARPQPDGREPVSLPAVVRELLPLMRASFSKGIAIEVRLAESGALVSADGGQLHQA 405

Query: 119 LLNLFMVAHASLPRGGKVTISVQ 141
           +LNL   A  ++PRGG++++ V+
Sbjct: 406 VLNLCTNAAQAMPRGGRLSVRVE 428


>gi|115375212|ref|ZP_01462478.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310818911|ref|YP_003951269.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367774|gb|EAU66743.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309391983|gb|ADO69442.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 836

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 83/221 (37%), Gaps = 19/221 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
              AL  L + + H++ +P+G I N++  L   +  + +   L+ + +  +    + +  
Sbjct: 609 RFAALGELSAIVAHEVRNPLGVIFNAVASLRRLMPSKGDAAMLLDILAEESDRLNRIVGD 668

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSWTGEKIDLSRERAK 117
              YT   D ++   D+ +VI+D +   +            ++ V  +   + + R   +
Sbjct: 669 LLDYTRPRDPILHPEDLGRVIQDALEAARLQGGPGGQGVSVQIHVEPSIPPVPMDRRLIR 728

Query: 118 -ILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFP-EKFTQIVDGNVE 173
             L+N+ + A  ++P GG V ++ +       +   + +       P E   ++ +    
Sbjct: 729 QALVNIIVNAIHAMPHGGVVRVNARREPHAGRDFLRIDVTDQGMGIPAELLHRVFEPFFT 788

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +  E++  +  E         +  L 
Sbjct: 789 TKAQGTGLGLAVVKRILEEHRGEIAVEGAQGQGTTFTLRLP 829


>gi|159897381|ref|YP_001543628.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890420|gb|ABX03500.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1055

 Score = 34.5 bits (78), Expect = 9.2,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 27/229 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAI-HNSLELL--DEVGIEDEVMQLIRLSSMSAIIR 63
           ++S  L AL  L S + HD  + + +I  N+  LL  ++     + +Q+I  ++    + 
Sbjct: 683 INSEKLRALGQLASGVAHDFNNLLASILGNAQFLLIHEDDADRRDALQVIERAAKDGAVT 742

Query: 64  LK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110
           ++    F R         D ++ L D+  +  +F              ++ +S       
Sbjct: 743 VRRIQEFARA---SETIYDDIVDLRDVVNIALEFTRPSWRDKTQQRGIKLDISTHLAAAH 799

Query: 111 LSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +    A++    +NL + A   LP+GG +TIS   +   + F++  NG     PE  T+I
Sbjct: 800 VQGSAAELREVCVNLVVNAIDVLPQGGTITISTGTTGEWSYFTIADNGPGI-APEDRTRI 858

Query: 168 VDGNVESTIDSHDIQFYYVILLA--HENKIRLLPEIIDDHNVVLSALLE 214
            +    +            + L+    ++ +LL E +  H      LL 
Sbjct: 859 FEPFFSTKPIGEGTGMGLAVALSIVQRHRGKLLTEDVYPHGARFVVLLP 907


>gi|302340470|ref|YP_003805676.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301637655|gb|ADK83082.1| response regulator receiver sensor signal transduction histidine
           kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 365

 Score = 34.5 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 30/221 (13%)

Query: 20  SRICHDIISPIGAI-------HNSLELLDEVGIEDEVMQLIRLSSMSA----IIRLKFMR 68
           S I HD+ SP  A+        + ++ L       E++  I  +S +A       L++ R
Sbjct: 146 SIIAHDLRSPFTALLGVSQYLRDGIDEL-SPETAKELIGGIHTASKNAFDLLENLLQWSR 204

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKI---- 118
           +  G    V   +   ++   + D I         K + V     +   +   A++    
Sbjct: 205 VQTGTAVFVPEDV---ELASSVRDNIGLLGVNIAAKELSVENKVPENIRAYADARVVDTV 261

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVE 173
           + NL   A    PRGG+V +  +++  +    ++ +G      +           +    
Sbjct: 262 IRNLLSNAVKFTPRGGRVELIGEENGKDCRLIVRDSGVGMSEKQLASLFKIDSRQNTKGT 321

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +           +   L  E       V +  L 
Sbjct: 322 EQEEGSGLGLILSKEFLDRSNGYLSVESRPGEGSVFTVTLP 362


>gi|258592528|emb|CBE68837.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 781

 Score = 34.5 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 18/104 (17%)

Query: 43  VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRV 100
            G  +   QL       A   L F R         +  + L    + + D ++   DKR+
Sbjct: 449 EGAGERCAQL-------ANRLLGFAR----GGKHQEMPVDLHTAAREVVDLLSRTIDKRI 497

Query: 101 QVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGGKVTIS 139
            ++               +  +++LNL + A  ++P GG +   
Sbjct: 498 TITQRLCVEQAVALGDPSQIQQVILNLAVNARDAMPHGGNLHFE 541


>gi|283851427|ref|ZP_06368708.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573165|gb|EFC21144.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 591

 Score = 34.5 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 20/163 (12%)

Query: 19  CSRICHDIISPI---GAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            +R+ H+I +P+   G   + +   L   G +   + +I   +      L  +R    +T
Sbjct: 375 AARLSHEIKNPLMLMGGFASQVRRHLPPEGTDAGKLGIIEDEAKRLESLLNEVR---DFT 431

Query: 75  GSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLF 123
                 I   D+ +        + E F A    V+     +   +  + A+I   LLNL 
Sbjct: 432 RPQPPRIEPRDLNETVGESLALMAEAFKARGIVVEKRLDPDLPPVPHDEARIKQVLLNLL 491

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             A  ++  GG+++++   +      ++   G     PE    
Sbjct: 492 KNAAEAMDSGGRLSVATALADGRVTVAVADTGGG--IPEAVRA 532


>gi|253700882|ref|YP_003022071.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775732|gb|ACT18313.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 692

 Score = 34.5 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 13/146 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSAIIRLKFMRLAFG 72
           LL   + HD  + +  I    E+L         ++     I  +S  A    + + LAF 
Sbjct: 316 LLAGGVAHDFNNILTVIGGYCEMLKLDLAPGHPLRDKVLQISAASERASNLTRSL-LAFS 374

Query: 73  YTGSVDS-LIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDL-----SRERAKILLNLFM 124
             G V +    L  + + +E F+     + + +S    +  +     S +  ++L+NL  
Sbjct: 375 RKGEVKAVPTDLNLLLRGVEKFLQRIIGEDITLSTKVPESSIWAVVDSGQIDQVLMNLAA 434

Query: 125 VAHASLPRGGKVTISVQDSKNENIFS 150
            A  ++P+GG + + ++    +  F 
Sbjct: 435 NARDAMPKGGSLFVELERQDIDAGFV 460


>gi|196229659|ref|ZP_03128523.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196225985|gb|EDY20491.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1055

 Score = 34.5 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 15/133 (11%)

Query: 22  ICHDIISPIGAIH--NSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAF 71
           I HD  + + AI   ++L LL+    +    + IR   M+A  R        L F R   
Sbjct: 688 IAHDFNNLLSAIQMQSAL-LLETAPDDGVTREGIRD-IMTAADRATHLTRQLLTFSRRNV 745

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHA 128
                +D    +G + +++   +  D  ++  +      +        ++L+NL + A  
Sbjct: 746 KQARDLDLTEVVGAMNKLLLRMLGEDIVLESRFASPLPMVHADPGMVEQVLMNLAINARD 805

Query: 129 SLPRGGKVTISVQ 141
           ++P GG++ +++ 
Sbjct: 806 AMPTGGRLIVTLD 818


>gi|167814380|ref|ZP_02446060.1| sensor histidine kinase [Burkholderia pseudomallei 91]
          Length = 612

 Score = 34.5 bits (78), Expect = 9.3,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91
           +D   +  +++ LI  S   A+ R++        F R     +G   +   L    +   
Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442

Query: 92  DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     E   L        + +++ +NL + A  S+   G +TI      +
Sbjct: 443 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203
               S+   G      +   +I D    +            I   +   +  R+  E   
Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 561

Query: 204 DHNVVLSALLE 214
                L+  L 
Sbjct: 562 GRGSTLTVTLP 572


>gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 1062

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLS---SMSAIIRLKFMRL 69
           SR+ H++ +P+ A+    +LL             +   Q++R            L   RL
Sbjct: 695 SRMSHELRTPLNAMIGFAQLLGLDRDPPLAPHQREWSTQMLRAGWHLLAMINDTLDLARL 754

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLFM 124
             G        + L        + IA         V      E + +  +  ++   L  
Sbjct: 755 ETGAVQLDLRPLDLRSAVGASIEMIATAAERMGVTVDAELAPEALAVLADDTRLKQVLTN 814

Query: 125 VAHASLPR---GGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD-----GNVEST 175
           +   ++     GG V +      +E     ++  G     PE+   +       G  +ST
Sbjct: 815 LLSNAVKYNRPGGTVVVESLAPDDEHVQLRVRDTGLGM-TPEQVAGLFQPYNRLGREQST 873

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I+   I       LA      L  +       V +  L +
Sbjct: 874 IEGTGIGLVISRRLAELMGGTLDGDSTAGSGSVFTLTLPR 913


>gi|182413096|ref|YP_001818162.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840310|gb|ACB74562.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 248

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 20/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLSSMSAIIR-LKFMRLAFGY 73
           H++ +P+ ++   ++LL+E              E +++IR          L+F+ LA G 
Sbjct: 34  HEVRNPLSSLDVHVQLLEEDLHQLPGGTLPKAAERLEIIRTELKRLDNIVLQFLSLA-GP 92

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRER-AKILLNLFMV 125
           T      + +G++   +    A +   +       V      ++  R +  + L+NL + 
Sbjct: 93  TTVNRQPVQIGEVIDYVCRLFAPEAATRDIELSAHVDAGLPPLEADRAQLTQALVNLVIN 152

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-PEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++ R G+V +  + ++      +++  + A   P+    + +    +      +  +
Sbjct: 153 ALQAVERRGRVEVLARRNETPAALVVEVRDSGAGIDPQHAVAMFEPFYTTRDQGTGLGLW 212

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V  +   +  R+          V +  L 
Sbjct: 213 IVHQIVSAHGGRVQATNAPAGGAVFTLQLP 242


>gi|119714514|ref|YP_921479.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119535175|gb|ABL79792.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 628

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------- 65
           D  + L + + H++ +P+  I  +LELL ++ +++   Q  + +      R++       
Sbjct: 401 DYRSQLIATLSHELRTPLTVISGNLELLGDLSLDETA-QHYQEAMTRGTTRMQKVVDDLL 459

Query: 66  -FMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERA--- 116
              R++      V   + L  + +   D +     A    +++     +  +  +     
Sbjct: 460 LLARVSDPQHPLVQVPVDLNAVTRTTVDLLTAPALAKGLSLRLQHNPREHLVPGDPGELD 519

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ++L NL   A    P GG VT++V+   +  +  +  +G
Sbjct: 520 RLLTNLVSNAVKYTPAGGTVTVTVERRGDAAVLEVADDG 558


>gi|20257537|gb|AAM15931.1|AF494454_2 NtrB [Gluconacetobacter diazotrophicus]
          Length = 384

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 76/209 (36%), Gaps = 21/209 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQ-LIRLSSMSAIIRLKFMRLAFGYTG 75
           + + + H++ +P+  I  + +LL+    E +  +  LIR  +      ++  R+      
Sbjct: 140 MAAILAHEVKNPLSGIRGAAQLLESSVAEGDRELAVLIRDEADRIRDLVE--RMEMFSDK 197

Query: 76  SVDSL-----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAH 127
            ++         L  +  + E   A + R+   +      +   R    ++LLNL   A 
Sbjct: 198 PLERRPVNIHRVLERVRMLAEQGFAGNIRIVEDYDPSLPPVWGNRDQLVQVLLNLVKNAA 257

Query: 128 ASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDI 181
            ++    +GG++T+    +   +   L + G   R         +     +  +I  H  
Sbjct: 258 EAIASDGQGGEITL---GTSYRHGVRLAVPGMEHRVELPLVVSVRDTGPGIPDSIRPHLF 314

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           + +     +         + +DDH  V+ 
Sbjct: 315 EPFLTTKTSGSGLGLPGGQDLDDHGGVIE 343


>gi|17545050|ref|NP_518452.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17427340|emb|CAD13859.1| probable c4-dicarboxylate transport sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 665

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 67/184 (36%), Gaps = 36/184 (19%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLDEV--GIEDEVMQLIRLSSM-- 58
           + +  L AL  + + I H++  P+ A+     N+  LL+    G   + ++ I   +   
Sbjct: 425 VQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRAIADLTERM 484

Query: 59  -SAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110
                +LK        RLA      V   + L  +  ++   +A +    + W   +   
Sbjct: 485 GKITAQLKLFAGRSRRRLA-----DVQVRVALDHVLALLRPRLA-EVETALHWRLPEAAC 538

Query: 111 -LSRERAKI---LLNLFMVAHAS-----LPRGGKVTISVQDSKNENI---FSLKINGNLA 158
            +  +  K+   L+NL   A  +     LPR G++ I +  +          ++ NG   
Sbjct: 539 VVRADELKLEQVLINLIGNALDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGPGI 598

Query: 159 RFPE 162
               
Sbjct: 599 AADA 602


>gi|194336406|ref|YP_002018200.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308883|gb|ACF43583.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 680

 Score = 34.5 bits (78), Expect = 9.4,   Method: Composition-based stats.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 26/172 (15%)

Query: 13  DLVAL--LCSRICHDIISPIGAIH-----NSLELLDEVGIEDEVMQLIRLSSM-----SA 60
            L A+  L S + H+I +P+ AI       ++E       E+E  QL+R         +A
Sbjct: 461 KLSAMGELASGVAHEIRNPLNAIGILAQRLAIE-FSPTADEEEYRQLVRAVVSEVYRVNA 519

Query: 61  IIR--LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWT-GEKIDLS 112
           II+  LKF R     +  +     L +        +     A   R  ++   G  +++ 
Sbjct: 520 IIQRFLKFAR----PSKLIMIKSDLDEFMLSYRHLLQGEADAKGIRFSLNTDSGAMVNID 575

Query: 113 RERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            E+ +  LLNL   A  +   GG++T+S+   +N+ +  +   G      E+
Sbjct: 576 HEQMRQALLNLVQNAVEATEEGGEITVSLFCRENQALIEIVDTGRGIPEKER 627


>gi|315604747|ref|ZP_07879810.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313759|gb|EFU61813.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 480

 Score = 34.5 bits (78), Expect = 9.5,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 10/203 (4%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLK-FMRLAFGYTGSVD 78
           + H++ +PI  +   +ELLD     D  +   L+        I +K  + LA        
Sbjct: 266 VSHELRTPITVVRGHMELLDPSDHADVVDTRALVIDELDRMGILVKDLLELARASDAVAP 325

Query: 79  SLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GG 134
           + + L  +   + D   A+  R  V         S + A++      +A  ++     G 
Sbjct: 326 TPVDLAALTDAVVDKASALGDRDWVLDASAHASCSLDSARMTQAWLQLAQNAVQYSAKGT 385

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAH 191
           +V I  +   +     ++  G      +      + V G     +    +    V  +A 
Sbjct: 386 EVGIGSRVEGDVARMWVRDRGEGIAPQDIERVRGRFVRGVGAERVSGSGLGLSIVESIAR 445

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +  RL  E         + ++ 
Sbjct: 446 AHGGRLDIESTLGEGSTFTLVIP 468


>gi|262195304|ref|YP_003266513.1| response regulator receiver sensor hybrid histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262078651|gb|ACY14620.1| response regulator receiver sensor hybrid histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 572

 Score = 34.5 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 20/173 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--------AIIRL 64
           + +A+L     H++ +P+  I   +EL++   + D ++  I+ +               L
Sbjct: 198 EFIAMLA----HELRNPLAPIVIGIELMESQNLTDPLLVRIQETMKRQVEHLTRLVDDLL 253

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119
              R+  G       +  L  I +   D       A   R+ V    E I+L  + A+I+
Sbjct: 254 DVSRITSGKIELRREMTPLAPIVEQATDAARPALEAQAHRLFVEMPSEPIELYVDAARII 313

Query: 120 LNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +  + + ++     GG++ +      ++ +    I+      PE   +I D
Sbjct: 314 QVVANLLNNAVRYTEPGGEIRLRCAREDDDVVSISVIDNGQGIEPEFIERIFD 366


>gi|219852415|ref|YP_002466847.1| PAS/PAC sensor hybrid histidine kinase [Methanosphaerula palustris
           E1-9c]
 gi|219546674|gb|ACL17124.1| PAS/PAC sensor hybrid histidine kinase [Methanosphaerula palustris
           E1-9c]
          Length = 976

 Score = 34.5 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQ 141
           L +  +      +     +VS    ++ L R++  + L  L   A  ++PRGG +TI  +
Sbjct: 678 LHEAAENCNGRGSYQIEYRVSDDLPRVFLDRDQIVEALQQLITNAMEAMPRGGTITIVAE 737

Query: 142 -----DSKNENIFSLKINGNLARFP-EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195
                D + E    +++       P E   +I + N  +   +  +       +  ++  
Sbjct: 738 LCDRTDGEREPQLCIRVIDIGQGIPDENQKKIFELNFTTKDGAAGLGLPLARSVIQKHGG 797

Query: 196 RLLPEIIDDHNVVLSALLE 214
            +          +++ ++ 
Sbjct: 798 EIEVSSGPGGGTIVTFMIP 816


>gi|119475917|ref|ZP_01616269.1| sensor histidine kinase [marine gamma proteobacterium HTCC2143]
 gi|119450544|gb|EAW31778.1| sensor histidine kinase [marine gamma proteobacterium HTCC2143]
          Length = 445

 Score = 34.5 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 23/157 (14%)

Query: 24  HDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS----MSAIIRLKFMRLAFGYTGSVD 78
           H++ +P+ A+   L  L++E G + + +Q +         S    L F RL      S D
Sbjct: 225 HELRTPLAALKVGLHNLIEESGPKSDNLQELEKGVDRMGHSIEQILAFHRL------SPD 278

Query: 79  SLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEKI--DLSRERAKILLNLFMVAHAS 129
             +   +        +Q I D  +  +R  ++   E     +  +R  +   L  +   +
Sbjct: 279 RFLASPEVVDIKKIAQQTIVDLYSACERKNLNIAIEGTTVLVEGDRFALATLLKNLVDNA 338

Query: 130 L---PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   P  G + I++    +    +++ +G+  +  + 
Sbjct: 339 IKYTPVNGTIVIAIAAMGSVATIAVEDSGSGIKEADL 375


>gi|77458230|ref|YP_347735.1| periplasmic sensor Signal transduction histidine kinase
           [Pseudomonas fluorescens Pf0-1]
 gi|77382233|gb|ABA73746.1| putative sensor histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 497

 Score = 34.5 bits (78), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
           +S+   VAL  + S + H + +P+  I +S EL  E    G +  +  +I          
Sbjct: 265 ISNETFVALGEMSSAVAHSLRNPLATIRSSAELAQEIASPGAQRNIGDIISQ-VDRMSRW 323

Query: 64  LKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
           ++ + ++          + L   +E  +  F A+ +R  V       D         + L
Sbjct: 324 VRELLVSLRPMSDDGEAVDLLAAVEDTLGAFDALIRRNGVEVRFTPQDCP-PVVSQQVLL 382

Query: 123 FMVAHA-------SLPRGGKVTISVQDSK-NENIFSLKINGNLA 158
             + ++       ++PRGG +++ ++ ++  +   +L   G   
Sbjct: 383 TQILNSLFANALEAMPRGGVLSVEIETAQTGQVRMTLSDTGKGM 426


>gi|209528133|ref|ZP_03276607.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491421|gb|EDZ91802.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 665

 Score = 34.5 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 18  LCSRICHDI---ISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-KFMRLAFGY 73
           L S I HD+   ++PI A     +L  +   ++++++LI  ++      + + +  A G+
Sbjct: 298 LASGIAHDLNNILTPILASVQMFQLGLDQEKQNKMLKLIENNTKRGAHLIKQVLSFAKGF 357

Query: 74  TGSVDSLIGLG---DIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLNLFMV 125
            G ++         ++  +  +       V  +     WT        +  +IL+NL + 
Sbjct: 358 EGKLEIFQVRHLISEVADIARETFPKSINVSTNVSKELWTVYGD--PTQLHQILMNLCVN 415

Query: 126 AHASLPRGGKVTISVQD 142
           A  ++P GG +++S  +
Sbjct: 416 ARDAMPGGGNLSLSASN 432


>gi|188579428|ref|YP_001922873.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001]
 gi|179342926|gb|ACB78338.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001]
          Length = 1381

 Score = 34.5 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 67/227 (29%), Gaps = 38/227 (16%)

Query: 22   ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIR--------LKFMRLAF 71
            + HD  + +  I  SLELL     +  +  L R   ++  A  R        L F R   
Sbjct: 1016 LAHDFNNLLTGISGSLELLQTRMSQGRLTDLDRYINAAQGASKRAAALTHRLLAFSR--- 1072

Query: 72   GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDLSRERAKILLNLFM 124
                       +  +   +ED I       V             +    +    LLNL +
Sbjct: 1073 -RQTLDPKPTDVNALVHGMEDLIRRTVGPAVHIEVVGAAGLWPALVDPPQLENALLNLCI 1131

Query: 125  VAHASLPRGGKVTISVQDSKNENIFS--------------LKINGNLARFPEKFTQIVDG 170
             A  ++P GG++TI   +   ++  +              +   G     P+   +  D 
Sbjct: 1132 NARDAMPEGGRITIETANKWLDDRTARERELPPGQYLSLCVTDTGTGM-TPDVIARAFDP 1190

Query: 171  NVESTIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215
               +            ++   A ++  ++           +   L +
Sbjct: 1191 FFTTKPTGQGTGLGLSMIYGFARQSGGQVRIYSEVGQGTTMCIYLPR 1237


>gi|163852260|ref|YP_001640303.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|218531018|ref|YP_002421834.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|163663865|gb|ABY31232.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|218523321|gb|ACK83906.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 622

 Score = 34.5 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 72/224 (32%), Gaps = 38/224 (16%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------LKFMRLAFGY 73
           I HD  + + AI  SLEL+     +   ++ +  ++  A  R        L F R     
Sbjct: 269 IAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNATGAAQRGSALTKRLLSFSR----- 323

Query: 74  TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK------ILLNL 122
             S D+     D   +IE   A+        V V    E  D+             +LNL
Sbjct: 324 --SNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEP-DMPFALVDPDQLELAVLNL 380

Query: 123 FMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGNLARFPEKFTQIVDGNVE 173
            + A  ++P GG VTIS + ++                  +      PE   ++ +    
Sbjct: 381 CINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTGIPPEILERVCEPFFT 440

Query: 174 STIDSHDIQFYYVIL--LAHENKIRLLPEIIDDHNVVLSALLEK 215
           +            ++  LA +   RL           +   L +
Sbjct: 441 TKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|21231478|ref|NP_637395.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|21113153|gb|AAM41319.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 423

 Score = 34.5 bits (78), Expect = 9.7,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 24/195 (12%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQL---IRLSSMSAIIR----LKFMRLAFGYTGS 76
           HD+ SP+ +I  + E+L           L   IR S           L F R   G  G 
Sbjct: 187 HDLRSPLQSISMATEMLQLEPQSPRGASLLGHIRTSLTRIGGLVDDVLDFARGRLG--GG 244

Query: 77  VDSLIGLGDI-----EQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNLFMVAHASL 130
           +   + + D       +V+++  +   R  +        ++  +  ++      +   + 
Sbjct: 245 IPVTLRVEDALERRLLEVVQEVCSATGRTDLHADIHIGGEIVCDAPRLSQLFANLLSNAA 304

Query: 131 PRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF------ 183
             G   + ++++  +   I  L ++      PEK  ++         D+   Q       
Sbjct: 305 VHGTPSIPVTLRAWQAAGILHLSVHNGGVIAPEKRAKLFSPFSRDDDDAP--QPGLGLGL 362

Query: 184 YYVILLAHENKIRLL 198
           Y    +A  ++ RL 
Sbjct: 363 YIAAEIAKAHEGRLS 377


>gi|239813727|ref|YP_002942637.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
 gi|239800304|gb|ACS17371.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
          Length = 641

 Score = 34.5 bits (78), Expect = 9.8,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIR 63
            + +A+L     H++ +P+  I N+LELL     E   +        + +R  +      
Sbjct: 277 TNFLAMLG----HELRNPLAPISNALELLKREKAESAALVHTRDIIGRQLRQITRLVDDL 332

Query: 64  LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDF--IAVDKRVQVSWTGEKIDL-----SRER 115
           L   R+  G     +  + L D   + IE    +   K   +    +  D      S   
Sbjct: 333 LDVGRITSGKIQLENKPVRLRDAIAEAIEAVRPLIDGKSQTLHLQTQDADPWIAGDSARV 392

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +I+ NL   A      GG + +S+  +  +   S++ +G      + 
Sbjct: 393 VQIVSNLVHNAAKFTGNGGNIHVSLSRTAADADISVRDDGPGIPPQDL 440


>gi|312200514|ref|YP_004020575.1| histidine kinase [Frankia sp. EuI1c]
 gi|311231850|gb|ADP84705.1| histidine kinase [Frankia sp. EuI1c]
          Length = 486

 Score = 34.5 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 14/75 (18%)

Query: 77  VDSLIGLGDIEQVIEDFIA---------VDKRVQVS---WTGEKIDLSRERAKILLNLFM 124
             +L+G  D+  V+ + +A         +D R+++    W   + D +R   + ++NL M
Sbjct: 225 QPALVGPIDVNAVLRETVAMLRRPLGARIDLRIELDDALWRV-RADPARLE-QAIVNLAM 282

Query: 125 VAHASLPRGGKVTIS 139
            A  ++PRGG +T++
Sbjct: 283 NARDAMPRGGTLTVT 297


>gi|237727861|ref|ZP_04558342.1| sensory kinase in two component regulatory system with HydG
           [Citrobacter sp. 30_2]
 gi|226910418|gb|EEH96336.1| sensory kinase in two component regulatory system with HydG
           [Citrobacter sp. 30_2]
          Length = 493

 Score = 34.5 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 37/98 (37%)

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL++ A  ++ R G +T+   +S  E +  +  +       E+   I      +  
Sbjct: 389 QVLLNLYLNAIHAIGRQGTITVEANESSGERVKIVVTDSGKGIAAEQLEAIFTPYFTTKA 448

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V  +  ++   +    ++      +  L 
Sbjct: 449 DGTGLGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLP 486


>gi|198284060|ref|YP_002220381.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198248581|gb|ACH84174.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 431

 Score = 34.5 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 14/191 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +LL + I HD+ SP+  +  + ELL +   +     +++         L    LA G   
Sbjct: 228 SLLLTGISHDLRSPLARLRMAWELLPDNTPQHLREGMLQD-IERMDALLA-QSLALG--R 283

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPR 132
            + + +   D+  ++ +  A  +R    W      +     +R  +   L  +   +L  
Sbjct: 284 GMSAKVVDFDLMVLLAEVGADFEREGGHWQATLPRRYPFRGDREALRRLLSNLLDNALRY 343

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH------DIQFYYV 186
           GG   +  +  K +    L++       PE   + V        D+        +     
Sbjct: 344 GGG-RVRAEFQKTQGRTQLRLCDEGPGVPEADLETVFEPFIRLDDARGHGEGSGLGLAIA 402

Query: 187 ILLAHENKIRL 197
             LA    +RL
Sbjct: 403 RQLAEAQGMRL 413


>gi|171741318|ref|ZP_02917125.1| hypothetical protein BIFDEN_00397 [Bifidobacterium dentium ATCC
           27678]
 gi|283455322|ref|YP_003359886.1| phosphate regulon sensor protein phoR [Bifidobacterium dentium Bd1]
 gi|171276932|gb|EDT44593.1| hypothetical protein BIFDEN_00397 [Bifidobacterium dentium ATCC
           27678]
 gi|283101956|gb|ADB09062.1| Phosphate regulon sensor protein phoR [Bifidobacterium dentium Bd1]
          Length = 456

 Score = 34.5 bits (78), Expect = 9.9,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 57/238 (23%), Gaps = 47/238 (19%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------------------LIR-LSSMSAI 61
           + H++ +P GAI    E + +   + + ++                   LI    + SA 
Sbjct: 192 VSHELKTPAGAISLLAETIGDAADDPDAVRYFSGRISKESERLTELVHRLIDLQKAQSAA 251

Query: 62  I-----RLKFMRLAFGYTGSVDSLIGLGDI--------------EQVIEDFIAVDKRVQV 102
                 RL  +R+A    G          I                +  D  A       
Sbjct: 252 AMLNAERLSVLRIAREAIGENQVKAESKRIGLALSLNGRPVPLRAGMAGDATASSGGEAD 311

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +     +  +   K   NL   A    P    V + +     +    +   G     P 
Sbjct: 312 VFVDADHETIKTAVK---NLVENAVNYSPMNTTVAVGIGHEGGKVTIRVVDQGIGIPAPS 368

Query: 163 K---FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    D           +          +    +     +      +  L +
Sbjct: 369 LDRIFERFYRVDPARSRETGGTGLGLAITKHCVQDCGGTITVWSREGEGSTFTITLPE 426


>gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 523

 Score = 34.5 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 13/164 (7%)

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDLSRERA 116
           L F R+  G     +  I L +        I+   + Q       ++     +     R 
Sbjct: 344 LDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQAKAQNIALDYEIAADLPHLIADHRRI 403

Query: 117 K-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING-----NLARFPEKFTQIVDG 170
           + +LLNL   A    P GG+V I    +    +  +   G            +    +D 
Sbjct: 404 RQVLLNLLSNAVKFTPDGGEVHIGALVADGAMLLRVTDTGIGIAAENIPLALERFGQIDS 463

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++    +   +       L   +   L           ++    
Sbjct: 464 DLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELGRGTTVTVTFP 507


>gi|53718346|ref|YP_107332.1| putative two-component sensor histidine kinase [Burkholderia
           pseudomallei K96243]
 gi|53724710|ref|YP_102089.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
 gi|67639305|ref|ZP_00438177.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|76809692|ref|YP_332335.1| EAL/GGDEF domain-containing protein [Burkholderia pseudomallei
           1710b]
 gi|121601428|ref|YP_993986.1| sensor histidine kinase [Burkholderia mallei SAVP1]
 gi|124383665|ref|YP_001028349.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126450107|ref|YP_001081994.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|126454746|ref|YP_001065038.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|167004167|ref|ZP_02269937.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|167844431|ref|ZP_02469939.1| sensor histidine kinase [Burkholderia pseudomallei B7210]
 gi|167901423|ref|ZP_02488628.1| sensor histidine kinase [Burkholderia pseudomallei NCTC 13177]
 gi|167909663|ref|ZP_02496754.1| sensor histidine kinase [Burkholderia pseudomallei 112]
 gi|226196660|ref|ZP_03792240.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|237810948|ref|YP_002895399.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|242317400|ref|ZP_04816416.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|254176754|ref|ZP_04883411.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254181712|ref|ZP_04888309.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|254187641|ref|ZP_04894153.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|254203771|ref|ZP_04910131.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|254208748|ref|ZP_04915096.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|254259644|ref|ZP_04950698.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
 gi|254360200|ref|ZP_04976470.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|52208760|emb|CAH34696.1| putative two-component sensor histidine kinase [Burkholderia
           pseudomallei K96243]
 gi|52428133|gb|AAU48726.1| sensor histidine kinase [Burkholderia mallei ATCC 23344]
 gi|76579145|gb|ABA48620.1| EAL/GGDEF domain protein [Burkholderia pseudomallei 1710b]
 gi|121230238|gb|ABM52756.1| sensor histidine kinase [Burkholderia mallei SAVP1]
 gi|124291685|gb|ABN00954.1| sensor histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126228388|gb|ABN91928.1| sensor histidine kinase [Burkholderia pseudomallei 1106a]
 gi|126242977|gb|ABO06070.1| sensor histidine kinase [Burkholderia mallei NCTC 10247]
 gi|147745283|gb|EDK52363.1| sensor histidine kinase [Burkholderia mallei FMH]
 gi|147750624|gb|EDK57693.1| sensor histidine kinase [Burkholderia mallei JHU]
 gi|148029440|gb|EDK87345.1| sensor histidine kinase [Burkholderia mallei 2002721280]
 gi|157935321|gb|EDO90991.1| sensor histidine kinase [Burkholderia pseudomallei Pasteur 52237]
 gi|160697795|gb|EDP87765.1| sensor histidine kinase [Burkholderia mallei ATCC 10399]
 gi|184212250|gb|EDU09293.1| sensor histidine kinase [Burkholderia pseudomallei 1655]
 gi|225931191|gb|EEH27198.1| sensor histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|237505497|gb|ACQ97815.1| sensor histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|238519841|gb|EEP83307.1| sensor histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|242140639|gb|EES27041.1| sensor histidine kinase [Burkholderia pseudomallei 1106b]
 gi|243060436|gb|EES42622.1| sensor histidine kinase [Burkholderia mallei PRL-20]
 gi|254218333|gb|EET07717.1| sensor histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 627

 Score = 34.5 bits (78), Expect = 10.0,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 22/191 (11%)

Query: 40  LDEVGIEDEVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIE 91
           +D   +  +++ LI  S   A+ R++        F R     +G   +   L    +   
Sbjct: 388 IDLDYVRGDILALIDESIDGAM-RVRRIVCDLRDFSR----PSGDAWAFADLHASLESTL 442

Query: 92  DFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           + +  + + +     E   L        + +++ +NL + A  S+   G +TI      +
Sbjct: 443 NVVHNELKYKADIVREYGVLPLVECNAAQLSQVFMNLLVNAAQSIGTHGTITIRTTHDGD 502

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL--LAHENKIRLLPEIID 203
               S+   G      +   +I D    +            I   +   +  R+  E   
Sbjct: 503 TVSISIADTGAGI-PEDAIGRIFDPFFTTKPVGQGTGLGLSISHGIVEHHGGRIDVESHV 561

Query: 204 DHNVVLSALLE 214
                L+  L 
Sbjct: 562 GRGSTLTVTLP 572


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.150    0.427 

Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,816,518,191
Number of Sequences: 14124377
Number of extensions: 149520207
Number of successful extensions: 470560
Number of sequences better than 10.0: 3019
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 2901
Number of HSP's that attempted gapping in prelim test: 468412
Number of HSP's gapped (non-prelim): 3660
length of query: 215
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 82
effective length of database: 2,964,251,489
effective search space: 243068622098
effective search space used: 243068622098
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 79 (34.9 bits)