RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780891|ref|YP_003065304.1| hypothetical protein
CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>2vxt_I Interleukin-18; FAB, IL-18, secreted, cytokine,
           autoimmunity, glycoprotein, TH1/TH2 cells,
           immunoglobulin domain, immunoglobulin V region; 1.49A
           {Homo sapiens} PDB: 1j0s_A 3f62_B (I:)
          Length = 157

 Score = 34.0 bits (78), Expect = 0.017
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 12/71 (16%)

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYV 186
           S PRG  VTISV+  K   I +L     +  F E        N    I     DI F+  
Sbjct: 55  SQPRGMAVTISVKAEK---ISTLSAENKIISFKE-------MNPPDNIKDTKSDIIFFQR 104

Query: 187 ILLAHENKIRL 197
            +  H+NK++ 
Sbjct: 105 SVPGHDNKMQF 115


>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
           system; 3.12A {Homo sapiens} (A:1-122)
          Length = 122

 Score = 28.8 bits (65), Expect = 0.55
 Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
                 +  +K  N+  LKI  
Sbjct: 62  DNFQGDIDIAK--NLAVLKILA 81


>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG
           folds, immune system; 2.70A {Homo sapiens} (A:)
          Length = 126

 Score = 27.7 bits (62), Expect = 1.3
 Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
            + + S   ++  N   L I+ 
Sbjct: 66  PRFSGSKDVAR--NRGYLSISE 85


>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22
           protein, T cell receptor delta, immune system; HET: NAG
           MAN FUC; 3.40A {Mus musculus} (F:1-123)
          Length = 123

 Score = 27.2 bits (61), Expect = 1.6
 Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
            K+  S   S   +   L I  
Sbjct: 66  KKMEASKNPSA--STSILTIYS 85


>2or7_A T-cell immunoglobulin and mucin domain- containing protein
           2; beta barrel, immunoglobulin fold, IGV domain, TIM,
           immune system; 1.50A {Mus musculus} (A:)
          Length = 115

 Score = 27.3 bits (61), Expect = 1.6
 Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
            +  +    S+     SL I  
Sbjct: 61  SRYQLKGNISE--GNVSLTIEN 80


>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory
           receptor, two-domain structure, V-SET, C2-SET, IG-like
           domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo
           sapiens} PDB: 2zg3_A* 2zg2_A (A:1-124)
          Length = 124

 Score = 27.4 bits (61), Expect = 1.6
 Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
           G+  +     K     SL I  
Sbjct: 69  GRFRLLGDVQK--KNCSLSIGD 88


>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase,
           oxidoreductase; HET: FAD; 1.80A {Lechevalieria
           aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
           (A:63-149,A:208-299)
          Length = 179

 Score = 27.2 bits (60), Expect = 1.7
 Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 16/83 (19%)

Query: 36  SLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDS------- 79
           S+EL    G+  ++                +      +  + L    T +          
Sbjct: 12  SMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDA 71

Query: 80  LIGLGDIEQVIEDFIAVDKRVQV 102
           +     +  ++ + +    R QV
Sbjct: 72  ICPQHWLAPLLAEAVGPRHRTQV 94


>1smo_A Triggering receptor expressed on myeloid cells 1; structure,
           activating receptors, TREM-1, innate immune system
           receptor; HET: TLA; 1.47A {Homo sapiens} (A:)
          Length = 119

 Score = 26.9 bits (60), Expect = 2.1
 Identities = 1/22 (4%), Positives = 8/22 (36%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
           G++ +         +  +++  
Sbjct: 63  GRIILEDYHDH--GLLRVRMVN 82


>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
           system; 3.12A {Homo sapiens} (B:1-126)
          Length = 126

 Score = 26.9 bits (60), Expect = 2.4
 Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
           GK  +        +  +L I+ 
Sbjct: 67  GKFEVDRIPET--STSTLTIHN 86


>1j8h_D T-cell receptor alpha chain; protein-protein complex,
           immunoglobulin fold, immune system; HET: NAG NDG; 2.40A
           {Homo sapiens} (D:1-116)
          Length = 116

 Score = 26.8 bits (60), Expect = 2.5
 Identities = 3/23 (13%), Positives = 5/23 (21%), Gaps = 2/23 (8%)

Query: 133 GGKVTISVQDSKNENIFSLKING 155
                   + S+    F L    
Sbjct: 59  INGFEAEFKKSE--TSFHLTKPS 79


>3bik_B Programmed cell death protein 1; CO-stimulation,
           receptor-ligand complex, immunoglobulin- like
           beta-sandwich, T cell, B cell, programmed death; 2.65A
           {Mus musculus} (B:)
          Length = 134

 Score = 26.8 bits (60), Expect = 2.6
 Identities = 3/22 (13%), Positives = 8/22 (36%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
            +  I    ++  + F + I  
Sbjct: 70  ARFQIIQLPNR--HDFHMNILD 89


>1ktk_E TCR beta chain, T-cell receptor beta chain; streptococcus,
           immunity, immune system; 3.00A {Homo sapiens} (E:1-121)
          Length = 121

 Score = 26.5 bits (59), Expect = 2.6
 Identities = 2/22 (9%), Positives = 4/22 (18%), Gaps = 2/22 (9%)

Query: 133 GGKVTISVQDSKNENIFSLKIN 154
             K  I+              +
Sbjct: 64  KDKFLINHASLT--LSTLTVTS 83


>2io8_A Bifunctional glutathionylspermidine synthetase/amidase;
           ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli}
           (A:202-358,A:572-619)
          Length = 205

 Score = 26.4 bits (58), Expect = 2.9
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 33  IHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +     LL    I   +   +RLS       +   R+ F    
Sbjct: 80  VLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDE 122


>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
           metallopeptidase, peptidoglycan hydrolase; 1.40A
           {Escherichia coli} (A:)
          Length = 255

 Score = 26.4 bits (58), Expect = 3.0
 Identities = 5/28 (17%), Positives = 13/28 (46%)

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT 137
            LS + + + +   ++    +P GG+  
Sbjct: 61  RLSSQVSNLGMGTVLIGDMGMPAGGRFN 88


>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity
           receptor, immunoglobulin domain; 2.2A {Homo sapiens}
           (A:)
          Length = 122

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 3/22 (13%), Positives = 7/22 (31%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
            + TI          F++ +  
Sbjct: 71  SRFTIWDDPDAG--FFTVTMTD 90


>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit;
           ATP-grAsp, purine biosynthesis, antimicrobial,
           ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A
           {Escherichia coli} (A:158-355)
          Length = 198

 Score = 26.4 bits (57), Expect = 3.4
 Identities = 5/39 (12%), Positives = 10/39 (25%)

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD 142
             G       + +++   L  +     P      I  Q 
Sbjct: 157 KVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQS 195


>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin
           fold, diabody, immune system; 2.42A {Mus musculus} PDB:
           1bwm_A (A:1-115)
          Length = 115

 Score = 26.0 bits (58), Expect = 3.6
 Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 2/22 (9%)

Query: 133 GGKVTISVQDSKNENIFSLKIN 154
                 + + S+    FSL + 
Sbjct: 59  IPDGYKASRPSQ--ENFSLILE 78


>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
           costimulation, glycoprotein, immunoglobulin domain,
           membrane, transmembrane, receptor; 1.60A {Mus musculus}
           PDB: 3bp5_A 1npu_A (A:)
          Length = 117

 Score = 26.0 bits (58), Expect = 3.9
 Identities = 3/22 (13%), Positives = 9/22 (40%), Gaps = 2/22 (9%)

Query: 133 GGKVTISVQDSKNENIFSLKIN 154
             +  I    ++++  F + I 
Sbjct: 59  DARFQIIQLPNRHD--FHMNIL 78


>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like
           polypeptide 1; immunoglobulin domain, beta sheet,
           polymorphism, immune system; 2.00A {Homo sapiens} PDB:
           2h3n_A (1:)
          Length = 116

 Score = 26.0 bits (58), Expect = 4.0
 Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 2/22 (9%)

Query: 134 GKVTISVQDSKNENIFSLKING 155
            + + S   ++  N   L I+ 
Sbjct: 64  PRFSGSKDVAR--NRGYLSISE 83


>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain
           linked with A synthetic...; single-chain FV, monoclonal
           antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
           3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* (F:)
          Length = 250

 Score = 26.2 bits (58), Expect = 4.1
 Identities = 4/21 (19%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 134 GKVTISVQDSKNENIFSLKIN 154
           GK T++   S   +   ++++
Sbjct: 197 GKATLTADKSS--STAYMQLS 215


>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange
           factor, structural genomics, NPPSFA; NMR {Homo sapiens}
           (A:)
          Length = 73

 Score = 25.5 bits (56), Expect = 5.1
 Identities = 9/47 (19%), Positives = 18/47 (38%)

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           SL  G  V I  +   ++  +  + NG +  FP  + +        +
Sbjct: 25  SLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQSGPS 71


>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
           subfragment 2, heavy meromyosin, essential light chain,
           motor protein; HET: MLY; 20.00A {Gallus gallus}
           (S:84-471,S:604-714)
          Length = 499

 Score = 25.3 bits (54), Expect = 6.0
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
           L   + +R+   +        + L +LD    E+ + D V  L+  SS  
Sbjct: 354 LFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFLNDNVTSLLNQSSDK 403


>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken
           spring-8 center, oxygnase component, 4-
           hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus
           thermophilus HB8} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A*
           2yyj_A* (A:53-137,A:278-457)
          Length = 265

 Score = 25.5 bits (56), Expect = 6.6
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 21  RICHDII-SPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
            I   I  S +  + +  +    +G    + + ++ +++ A  R+   RLA+  T S
Sbjct: 182 EILEQIGASGLITLPSEKDFKGPLG--PFLEKFLQGAALEAKERVALFRLAWDMTLS 236


>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; HET: FLC; 1.90A {Thermotoga maritima}
           (A:213-313)
          Length = 101

 Score = 25.2 bits (55), Expect = 7.0
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 31  GAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI 90
           GA      +L+E+G ED V + ++       ++ K   + FG+            +++V+
Sbjct: 1   GASEKVPPMLEEIGSEDRVEEFVQ-----KCLKEKRKIMGFGHRVYKTYDPRAVFLKRVL 55

Query: 91  EDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
           ++     K  +++   E+  +S +   I  N+
Sbjct: 56  QEHFPDSKLFRIASKLEEYIVSNKIKNIYPNV 87


>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; 2.30A {Zea mays}
           (A:1-115,A:199-249)
          Length = 166

 Score = 25.2 bits (55), Expect = 7.1
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           G +D+++ LG      +        V  SW   +    R   +I
Sbjct: 106 GMMDTVLNLGFPSDPKKQLELAVLAVFNSWESPRAKKYRSINQI 149


>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
           genomics, structural genomics consortium, SGC,
           alternative initiation ATP-binding; 2.80A {Homo sapiens}
           (A:)
          Length = 175

 Score = 25.1 bits (54), Expect = 7.2
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           S +  ++I+ YYV+    ++K + L  I     
Sbjct: 1   SMLTLNNIRQYYVLCEHRKDKYQALCNIYGSIT 33


>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell
           WALL biogenesis/degradation, cell cycle, cell shape,
           cell division; HET: GPP; 1.8A {Mycobacterium
           tuberculosis} PDB: 2vg2_A* 2vg4_A (A:)
          Length = 284

 Score = 25.1 bits (54), Expect = 7.5
 Identities = 6/43 (13%), Positives = 13/43 (30%)

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            +    ++  G+  R        +    E T  +  I   Y +
Sbjct: 139 KKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCV 181


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.140    0.390 

Gapped
Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,564,713
Number of extensions: 68077
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 35
Length of query: 215
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 130
Effective length of database: 2,082,624
Effective search space: 270741120
Effective search space used: 270741120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.1 bits)