HHsearch alignment for GI: 254780892 and conserved domain: COG2197

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].

Probab=99.80  E-value=6.4e-18  Score=127.17  Aligned_cols=115  Identities=33%  Similarity=0.416  Sum_probs=102.8

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEE
Q ss_conf             79997399899999999999889-8999-999979999999717999489970789987--7389999614348897399
Q gi|254780892|r    3 SLLLVDSSHIVRKVGRHLFNDFG-FMVF-EATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVY   78 (133)
Q Consensus         3 ~ILiVDD~~~~r~~l~~~L~~~g-~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii   78 (133)
T Consensus         2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~-~~pdvvl~Dl~mP~~~G~e~~~~l~--~~~p~~~vv   78 (211)
T COG2197           2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE-LKPDVVLLDLSMPGMDGLEALKQLR--ARGPDIKVV   78 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHH--HHCCCCEEE
T ss_conf             4999809777999999999868996699982788999998513-7998899837889987599999999--868997299


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Q ss_conf             996389989999999769988997698989999999999999
Q gi|254780892|r   79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQM  120 (133)
Q Consensus        79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~  120 (133)
T Consensus        79 vlt~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G  120 (211)
T COG2197          79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG  120 (211)
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             996778989999999779969986799999999999999758