HHsearch alignment for GI: 254780892 and conserved domain: COG3947
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=99.70 E-value=9.1e-17 Score=120.29 Aligned_cols=115 Identities=19% Similarity=0.310 Sum_probs=100.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~-~kpDLifldI~mp~~ngiefaeQvr~i--~~~v~iifI 78 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEV-FKPDLIFLDIVMPYMNGIEFAEQVRDI--ESAVPIIFI 78 (361)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHH--HCCCCEEEE
T ss_conf 27998463899999999998611021006887889999984-388779998523786087899999875--314868999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 638998999999976998899769898999999999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQK 122 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~ 122 (133)
T Consensus 79 ssh~eya--~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve 118 (361)
T COG3947 79 SSHAEYA--DDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVE 118 (361)
T ss_pred ECCHHHH--HHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 6305652--320355667541688888899999998740244