HHsearch alignment for GI: 254780892 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.87  E-value=6.9e-21  Score=144.83  Aligned_cols=120  Identities=25%  Similarity=0.269  Sum_probs=106.5

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEEE
Q ss_conf             779997399899999999999889899999997999999971799948997078998773--899996143488973999
Q gi|254780892|r    2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYY   79 (133)
Q Consensus         2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii~   79 (133)
T Consensus         5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-~~~pGclllDvrMPg~sGlelq~~L~~--~~~~~PVIf   81 (202)
T COG4566           5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-LDRPGCLLLDVRMPGMSGLELQDRLAE--RGIRLPVIF   81 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHH--CCCCCCEEE
T ss_conf             76899768488999999999838953665047999983066-788976998557888850899999995--399988799


Q ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             963899899999997699889976989899999999999999999
Q gi|254780892|r   80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK  124 (133)
Q Consensus        80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~  124 (133)
T Consensus        82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~  126 (202)
T COG4566          82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASR  126 (202)
T ss_pred             EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             827887289999997421567747885489999999999988888