HHsearch alignment for GI: 254780892 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.87 E-value=6.9e-21 Score=144.83 Aligned_cols=120 Identities=25% Similarity=0.269 Sum_probs=106.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCH--HHHHHHHCCCCCCCEEEE
Q ss_conf 779997399899999999999889899999997999999971799948997078998773--899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLE--FIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~--l~~~ir~~~~~~~~pii~ 79 (133)
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~-~~~pGclllDvrMPg~sGlelq~~L~~--~~~~~PVIf 81 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP-LDRPGCLLLDVRMPGMSGLELQDRLAE--RGIRLPVIF 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHH--CCCCCCEEE
T ss_conf 76899768488999999999838953665047999983066-788976998557888850899999995--399988799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~ 124 (133)
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~ 126 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASR 126 (202)
T ss_pred EECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 827887289999997421567747885489999999999988888