HHsearch alignment for GI: 254780892 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.94 E-value=3.2e-25 Score=170.70 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=108.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHH-CCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCC
Q ss_conf 97799973998999999999998-898999-99997999999971-7999489970789987--7389999614348897
Q gi|254780892|r 1 MDSLLLVDSSHIVRKVGRHLFND-FGFMVF-EATSVCEAREFCEK-ELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDV 75 (133)
Q Consensus 1 m~~ILiVDD~~~~r~~l~~~L~~-~g~~v~-~a~~g~eAl~~~~~-~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~ 75 (133)
T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~--~~~~ 78 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA--GCKS 78 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH--CCCC
T ss_conf 98799992989999999999851899089999899999999996579998589978999999789999999985--8998
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3999963899899999997699889976989899999999999999999
Q gi|254780892|r 76 FVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSK 124 (133)
Q Consensus 76 pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~ 124 (133)
T Consensus 79 ~VI~ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~~~~l 127 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKMAL 127 (239)
T ss_pred EEEEEEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1999972688999999998395030489999999999999999999985