HHsearch alignment for GI: 254780892 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.44 E-value=7.6e-13 Score=96.92 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=91.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l 80 (133)
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~-~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~ 95 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPD-IDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVV 95 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCC-CCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEE
T ss_conf 9999468887775234566677421276323888986531589-876996565788867999999861--3899988999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 6389989999999769988997698989999999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
T Consensus 96 t~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~ 130 (674)
T PRK13558 96 PTAVDEDVARRAVDADATGLVPA--VSEDATAAIADR 130 (674)
T ss_pred ECCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHH
T ss_conf 56785899999875163643344--717689999999