HHsearch alignment for GI: 254780892 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.44  E-value=7.6e-13  Score=96.92  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=91.3

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEEE
Q ss_conf             799973998999999999998898999999979999999717999489970789987--738999961434889739999
Q gi|254780892|r    3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYYL   80 (133)
Q Consensus         3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~l   80 (133)
T Consensus        19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~-~DCvv~dy~~~~~dGieLLe~vRe--~~p~lP~Il~   95 (674)
T PRK13558         19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPD-IDCVVAVHEPDGFDGVAFLEAVRQ--THAEFPVVVV   95 (674)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCC-CCEEEECCCCCCCCHHHHHHHHHH--CCCCCCEEEE
T ss_conf             9999468887775234566677421276323888986531589-876996565788867999999861--3899988999


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             6389989999999769988997698989999999999
Q gi|254780892|r   81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL  117 (133)
Q Consensus        81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~  117 (133)
T Consensus        96 t~~gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~  130 (674)
T PRK13558         96 PTAVDEDVARRAVDADATGLVPA--VSEDATAAIADR  130 (674)
T ss_pred             ECCCCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHH
T ss_conf             56785899999875163643344--717689999999