HHsearch alignment for GI: 254780892 and conserved domain: cd02068
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.54 E-value=1.4 Score=23.75 Aligned_cols=101 Identities=18% Similarity=0.082 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHCCCEEEEECC--HHHHHHHHHHCCCCCEEEECCCCCC---CCHHHHHHHHCCCCCCCEEEEEECCCCHH
Q ss_conf 999999999988989999999--7999999971799948997078998---77389999614348897399996389989
Q gi|254780892|r 13 VRKVGRHLFNDFGFMVFEATS--VCEAREFCEKELLPNYLVIDESMEG---VLEFIAHVRQMPLGTDVFVYYLLMEVDFE 87 (133)
Q Consensus 13 ~r~~l~~~L~~~g~~v~~a~~--g~eAl~~~~~~~~pdlii~D~~mP~---~~~l~~~ir~~~~~~~~pii~lT~~~~~~ 87 (133)
T Consensus 4 Gl~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~--~p~~~iv~GG~h~t~~ 81 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEV--LPNVIVVVGGPHATFF 81 (127)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCC
T ss_conf 99999999997899579985787620399998649969999997688999999999999997--8997899859874549
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99999976998899769898999999999
Q gi|254780892|r 88 KMIAGARAGANSFLLKPFNRETLRFAMRE 116 (133)
Q Consensus 88 ~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~ 116 (133)
T Consensus 82 -p~~~l~~~~~D~vv~GEGE~t~~~ll~~ 109 (127)
T cd02068 82 -PEEILEEPGVDFVVIGEGEETFLKLLEE 109 (127)
T ss_pred -HHHHHHCCCCCEEEECCHHHHHHHHHHH
T ss_conf -9999707587789968689999999999