HHsearch alignment for GI: 254780892 and conserved domain: cd02070
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.45 E-value=0.036 Score=33.33 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHCCCEEEE--ECCH-HHHHHHHHHCCCCCEEEECCCCCC----CCHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 89999999999988989999--9997-999999971799948997078998----7738999961434889739999638
Q gi|254780892|r 11 HIVRKVGRHLFNDFGFMVFE--ATSV-CEAREFCEKELLPNYLVIDESMEG----VLEFIAHVRQMPLGTDVFVYYLLME 83 (133)
Q Consensus 11 ~~~r~~l~~~L~~~g~~v~~--a~~g-~eAl~~~~~~~~pdlii~D~~mP~----~~~l~~~ir~~~~~~~~pii~lT~~ 83 (133)
T Consensus 96 ~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~-~~~divglS~~~~~~~~~~~~~i~~lr~~~~~~~v~i~vGG~a 174 (201)
T cd02070 96 DIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKE-HKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 899999999998789779977899997999999997-2989999962566889999999999997289889859998801
Q ss_pred CCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9989999999769988997698
Q gi|254780892|r 84 VDFEKMIAGARAGANSFLLKPF 105 (133)
Q Consensus 84 ~~~~~~~~a~~~Ga~~yl~KP~ 105 (133)
T Consensus 175 ~~~~---~a~~~GAD~~a~da~ 193 (201)
T cd02070 175 VNQE---FADEIGADGYAEDAA 193 (201)
T ss_pred CCHH---HHHHHCCCEECCCHH
T ss_conf 7999---999929887847999