HHsearch alignment for GI: 254780892 and conserved domain: cd02071
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.19 E-value=1.5 Score=23.57 Aligned_cols=104 Identities=18% Similarity=0.062 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCEEEECCCCCCC----CHHHHHHHHCCCCCCCEEEEE
Q ss_conf 39989999999999988989999---99979999999717999489970789987----738999961434889739999
Q gi|254780892|r 8 DSSHIVRKVGRHLFNDFGFMVFE---ATSVCEAREFCEKELLPNYLVIDESMEGV----LEFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 8 DD~~~~r~~l~~~L~~~g~~v~~---a~~g~eAl~~~~~~~~pdlii~D~~mP~~----~~l~~~ir~~~~~~~~pii~l 80 (133)
T Consensus 10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~-ad~IglSsL~g~h~~~~~~l~~~L~e~-G~~di~v~-v 86 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED-VDVIGLSSLSGGHMTLFPEVIELLREL-GAGDILVV-G 86 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCCEEE-E
T ss_conf 62287799999999978976996799889999999999739-989999646554478999999999976-99984699-9
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 6389989999999769988997698989999999
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAM 114 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i 114 (133)
T Consensus 87 GG~Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i 120 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 4564989999999779988989588999999997