HHsearch alignment for GI: 254780892 and conserved domain: pfam06490
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.53 E-value=1.8e-06 Score=58.94 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=81.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEC
Q ss_conf 79997399899999999999889899999997999999971799948997078998773899996143488973999963
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVLEFIAHVRQMPLGTDVFVYYLLM 82 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~~l~~~ir~~~~~~~~pii~lT~ 82 (133)
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~-~~~~~~~~a~~v~~~~~~~~~~~l~~l~~--~~p~~Pvlllg~ 77 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSA-ALLSSRWEALAVILGSVSGLADLLKALAK--WDPHLPVLLLGE 77 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHH--HCCCCCEEEECC
T ss_conf 989986888999979999986499649954889889-88637885299996785209999999996--488999999878
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 89989999999769988997698989999999999
Q gi|254780892|r 83 EVDFEKMIAGARAGANSFLLKPFNRETLRFAMREL 117 (133)
Q Consensus 83 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~ 117 (133)
T Consensus 78 ~~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 78 HDSAAE-----LANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCCHHH-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 875212-----055258707889879999999875