HHsearch results for GI: 254780892 and protein with PDBid: 1ny5_A
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=99.94 E-value=4.2e-25 Score=168.69 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=113.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEEEE
Q ss_conf 7999739989999999999988989999999799999997179994899707899877--38999961434889739999
Q gi|254780892|r 3 SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVYYL 80 (133)
Q Consensus 3 ~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii~l 80 (133)
|||||||++..+..++.+|+..||+|..|.||.+|++.+.++ .||+||+|+.||||. ++++++|.. .+++|||++
T Consensus 2 rILiVDDd~~~~~~l~~~L~~~G~~V~~a~s~~eAl~~l~~~-~~DlVllDl~mP~~dGlell~~lr~~--~p~~pVIvl 78 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK-HFNVVLLDLLLPDVNGLEILKWIKER--SPETEVIVI 78 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS-CCSEEEEESBCSSSBHHHHHHHHHHH--CTTSEEEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHC--CCCCCEEEE
T ss_conf 799994889999999999997799999989999999998618-99889995999999999999999844--999828995
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63899899999997699889976989899999999999999999999877
Q gi|254780892|r 81 LMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKDENQFL 130 (133)
Q Consensus 81 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~~l 130 (133)
|++++.+...+|++.||.||+.||++.+.|..++.+.....+.+..++.+
T Consensus 79 Tg~~~~~~a~~A~~~GA~dyl~KP~~~~~L~~~i~~a~~~~~~~~~~~~l 128 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENELL 128 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05541343544441476531258720256777887667788888778887