HHsearch results for GI: 254780892 and protein with PDBid: 1s8n_A
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.96 E-value=7.3e-28 Score=185.14 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=108.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEE
Q ss_conf 7799973998999999999998898999-9999799999997179994899707899877--389999614348897399
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVY 78 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii 78 (133)
+|||||||++.+|..++++|+..||+|. +|.||++|++.+.++ .||+||+|++||||+ ++++++|+. +.+|||
T Consensus 14 ~rILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~-~pDlillDi~MP~mdGle~~~~ir~~---~~~pii 89 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH-KPDLVIMDVKMPRRDGIDAASEIASK---RIAPIV 89 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-CCSEEEEESSCSSSCHHHHHHHHHHT---TCSCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHC---CCCCEE
T ss_conf 88999829899999999999986997999989999999999837-99999996404586079999999856---999989
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99638998999999976998899769898999999999999999999
Q gi|254780892|r 79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125 (133)
Q Consensus 79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~ 125 (133)
++|++++.+...+|+++||++||.|||+.++|..+|++++...+...
T Consensus 90 ilTa~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~~~~ 136 (205)
T 1s8n_A 90 VLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREIT 136 (205)
T ss_dssp EEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99567889999999982984214389999999999999998644310