HHsearch results for GI: 254780892 and protein with PDBid: 1s8n_A

>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.96  E-value=7.3e-28  Score=185.14  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=108.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHCCCCCCCEEE
Q ss_conf             7799973998999999999998898999-9999799999997179994899707899877--389999614348897399
Q gi|254780892|r    2 DSLLLVDSSHIVRKVGRHLFNDFGFMVF-EATSVCEAREFCEKELLPNYLVIDESMEGVL--EFIAHVRQMPLGTDVFVY   78 (133)
Q Consensus         2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~-~a~~g~eAl~~~~~~~~pdlii~D~~mP~~~--~l~~~ir~~~~~~~~pii   78 (133)
                      +|||||||++.+|..++++|+..||+|. +|.||++|++.+.++ .||+||+|++||||+  ++++++|+.   +.+|||
T Consensus        14 ~rILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~-~pDlillDi~MP~mdGle~~~~ir~~---~~~pii   89 (205)
T 1s8n_A           14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH-KPDLVIMDVKMPRRDGIDAASEIASK---RIAPIV   89 (205)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-CCSEEEEESSCSSSCHHHHHHHHHHT---TCSCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHC---CCCCEE
T ss_conf             88999829899999999999986997999989999999999837-99999996404586079999999856---999989


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99638998999999976998899769898999999999999999999
Q gi|254780892|r   79 YLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD  125 (133)
Q Consensus        79 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~  125 (133)
                      ++|++++.+...+|+++||++||.|||+.++|..+|++++...+...
T Consensus        90 ilTa~~~~~~~~~al~~Ga~dyl~KP~~~~~l~~~i~~~l~~~~~~~  136 (205)
T 1s8n_A           90 VLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREIT  136 (205)
T ss_dssp             EEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99567889999999982984214389999999999999998644310