HHsearch results for GI: 254780892 and protein with PDBid: 2j48_A
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.90 E-value=1.5e-23 Score=159.35 Aligned_cols=113 Identities=18% Similarity=0.163 Sum_probs=103.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEEEE
Q ss_conf 7799973998999999999998898999999979999999717999489970789987--73899996143488973999
Q gi|254780892|r 2 DSLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFVYY 79 (133)
Q Consensus 2 ~~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pii~ 79 (133)
.||||||||+.+++.++..|+.+||+|..|.||.+|++.+.+. .||+|++|+.||++ .++++++|+.+..+.+|+|+
T Consensus 2 ~rILiVdd~~~~~~~~~~~L~~~g~~v~~a~~~~~al~~l~~~-~pdlvllD~~lp~~~G~~l~~~lr~~~~~~~~pii~ 80 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL-QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVL 80 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH-CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 9899997999999999999998899999989999999999817-999899963799999999999998288889864999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 963899899999997699889976989899999999999
Q gi|254780892|r 80 LLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 (133)
Q Consensus 80 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~ 118 (133)
+|++++. .+++++|+++|+.|||++++|..++++++
T Consensus 81 ~t~~~~~---~~~~~~ga~~~l~KP~~~~~L~~~v~~ll 116 (119)
T 2j48_A 81 FLGEPPV---DPLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EESSCCS---SHHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EECCHHH---HHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 9771889---99998799899989899999999999883