HHsearch results for GI: 254780892 and protein with PDBid: 3cfy_A
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.95 E-value=6.3e-27 Score=179.56 Aligned_cols=122 Identities=19% Similarity=0.288 Sum_probs=111.5
Q ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCCCEE
Q ss_conf 97-799973998999999999998898999999979999999717999489970789987--738999961434889739
Q gi|254780892|r 1 MD-SLLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTDVFV 77 (133)
Q Consensus 1 m~-~ILiVDD~~~~r~~l~~~L~~~g~~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~~pi 77 (133)
|| ||||||||+.+|..++..|+.+||+|.+|.||++|++.+.++ .||+|++|++||++ .++++++|+. .+.+||
T Consensus 3 mk~rILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~-~pdlillD~~mp~~~G~~l~~~ir~~--~~~~pi 79 (137)
T 3cfy_A 3 LRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS-KPQLIILDLKLPDMSGEDVLDWINQN--DIPTSV 79 (137)
T ss_dssp CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH-CCSEEEECSBCSSSBHHHHHHHHHHT--TCCCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCE
T ss_conf 997699997999999999999998799999989999999999847-99999983899999889999999974--899848
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999638998999999976998899769898999999999999999999
Q gi|254780892|r 78 YYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQKSKD 125 (133)
Q Consensus 78 i~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~ 125 (133)
|++|++++.+...+++++||+||+.|||+.++|..++++++++.+..+
T Consensus 80 I~lt~~~~~~~~~~~~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~le~ 127 (137)
T 3cfy_A 80 IIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLED 127 (137)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999877999999999867986899898999999999999999988999