HHsearch results for GI: 254780892 and protein with PDBid: 3cu5_A
>3cu5_A Two component transcriptional regulator, ARAC family; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.94 E-value=2.5e-26 Score=176.00 Aligned_cols=118 Identities=21% Similarity=0.222 Sum_probs=106.1
Q ss_pred CC-EEEEECCCHHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHCCCCCC
Q ss_conf 97-799973998999999999998898---999999979999999717999489970789987--738999961434889
Q gi|254780892|r 1 MD-SLLLVDSSHIVRKVGRHLFNDFGF---MVFEATSVCEAREFCEKELLPNYLVIDESMEGV--LEFIAHVRQMPLGTD 74 (133)
Q Consensus 1 m~-~ILiVDD~~~~r~~l~~~L~~~g~---~v~~a~~g~eAl~~~~~~~~pdlii~D~~mP~~--~~l~~~ir~~~~~~~ 74 (133)
|+ |||||||++.+|..++..|+.+|+ .|.+|.||.+|++.+.+ ..||+||+|++||+| +++++++|+. .++
T Consensus 1 M~irILiVDD~~~~r~~l~~~L~~~~~~~~~v~~a~~g~eal~~~~~-~~pdlillDi~MP~~dG~el~~~i~~~--~p~ 77 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALK-HPPNVLLTDVRMPRMDGIELVDNILKL--YPD 77 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTT-SCCSEEEEESCCSSSCHHHHHHHHHHH--CTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH--CCC
T ss_conf 99749999099999999999999659984599897999999999986-799989973689999999999999975--879
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 73999963899899999997699889976989899999999999999
Q gi|254780892|r 75 VFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELPQMQ 121 (133)
Q Consensus 75 ~pii~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~~~~~ 121 (133)
+|||++|++++.+...+|+++||.+||.||+++++|..+++++++..
T Consensus 78 ~~iI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 124 (141)
T 3cu5_A 78 CSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp CEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 93999978799999999998699989979899999999999999999